BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3880c Length=115 Score E Sequences producing significant alignments: (Bits) Value gi|15611016|ref|NP_218397.1| hypothetical protein Rv3880c [Mycob... 228 2e-58 gi|15843512|ref|NP_338549.1| hypothetical protein MT3995 [Mycoba... 226 8e-58 gi|254233367|ref|ZP_04926693.1| conserved hypothetical protein [... 221 2e-56 gi|306970130|ref|ZP_07482791.1| hypothetical protein TMIG_00237 ... 189 8e-47 gi|240168360|ref|ZP_04747019.1| hypothetical protein MkanA1_0354... 180 8e-44 gi|183985427|ref|YP_001853718.1| hypothetical protein MMAR_5456 ... 172 1e-41 gi|240170255|ref|ZP_04748914.1| hypothetical protein MkanA1_1315... 136 9e-31 gi|183984319|ref|YP_001852610.1| hypothetical protein MMAR_4348 ... 131 3e-29 gi|15826896|ref|NP_301159.1| hypothetical protein ML0044 [Mycoba... 128 3e-28 gi|118619680|ref|YP_908012.1| hypothetical protein MUL_4590 [Myc... 122 1e-26 gi|183985405|ref|YP_001853696.1| hypothetical protein MMAR_5434 ... 115 2e-24 gi|118618030|ref|YP_906362.1| hypothetical protein MUL_2549 [Myc... 107 4e-22 gi|183981353|ref|YP_001849644.1| hypothetical protein MMAR_1330 ... 107 5e-22 gi|183985390|ref|YP_001853681.1| hypothetical protein MMAR_5419 ... 107 5e-22 gi|120401117|ref|YP_950946.1| hypothetical protein Mvan_0089 [My... 105 2e-21 gi|118468461|ref|YP_884497.1| hypothetical protein MSMEG_0081 [M... 95.9 2e-18 gi|145221353|ref|YP_001132031.1| hypothetical protein Mflv_0758 ... 91.3 4e-17 gi|108797056|ref|YP_637253.1| hypothetical protein Mmcs_0075 [My... 90.9 5e-17 gi|126432678|ref|YP_001068369.1| hypothetical protein Mjls_0065 ... 89.4 1e-16 gi|315441763|ref|YP_004074642.1| hypothetical protein Mspyr1_007... 88.6 3e-16 gi|74483044|gb|ABA10329.1| 57 kDa surface antigen protein [Mycob... 80.1 9e-14 gi|240171368|ref|ZP_04750027.1| hypothetical protein MkanA1_1879... 49.7 1e-04 gi|262170778|ref|ZP_06038456.1| membrane-associated zinc metallo... 39.3 0.21 gi|258627357|ref|ZP_05722141.1| Putative zinc metalloprotease [V... 39.3 0.21 gi|258621003|ref|ZP_05716037.1| Putative zinc metalloprotease [V... 39.3 0.21 gi|262166330|ref|ZP_06034067.1| membrane-associated zinc metallo... 38.1 0.39 gi|294883766|ref|XP_002771064.1| hypothetical protein Pmar_PMAR0... 37.7 0.65 gi|159480638|ref|XP_001698389.1| predicted protein [Chlamydomona... 36.2 1.7 gi|302831828|ref|XP_002947479.1| hypothetical protein VOLCADRAFT... 35.0 3.3 gi|153956410|ref|YP_001397175.1| hypothetical protein CKL_3826 [... 33.9 8.5 gi|219856722|ref|YP_002473844.1| hypothetical protein CKR_3379 [... 33.9 8.9 >gi|15611016|ref|NP_218397.1| hypothetical protein Rv3880c [Mycobacterium tuberculosis H37Rv] gi|31795054|ref|NP_857547.1| hypothetical protein Mb3910c [Mycobacterium bovis AF2122/97] gi|121639790|ref|YP_980014.1| hypothetical protein BCG_3935c [Mycobacterium bovis BCG str. Pasteur 1173P2] 67 more sequence titles Length=115 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 114/115 (99%), Positives = 115/115 (100%), Gaps = 0/115 (0%) Query 1 VSMDELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRI 60 +SMDELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRI Sbjct 1 MSMDELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRI 60 Query 61 EDGLLKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGMA 115 EDGLLKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGMA Sbjct 61 EDGLLKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGMA 115 >gi|15843512|ref|NP_338549.1| hypothetical protein MT3995 [Mycobacterium tuberculosis CDC1551] gi|289556149|ref|ZP_06445359.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|308375021|ref|ZP_07442401.2| hypothetical protein TMGG_01427 [Mycobacterium tuberculosis SUMu007] gi|13883887|gb|AAK48363.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|289440781|gb|EFD23274.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|308347632|gb|EFP36483.1| hypothetical protein TMGG_01427 [Mycobacterium tuberculosis SUMu007] gi|339296688|gb|AEJ48799.1| hypothetical protein CCDC5079_3610 [Mycobacterium tuberculosis CCDC5079] gi|339300281|gb|AEJ52391.1| hypothetical protein CCDC5180_3554 [Mycobacterium tuberculosis CCDC5180] Length=113 Score = 226 bits (576), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 113/113 (100%), Positives = 113/113 (100%), Gaps = 0/113 (0%) Query 3 MDELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIED 62 MDELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIED Sbjct 1 MDELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIED 60 Query 63 GLLKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGMA 115 GLLKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGMA Sbjct 61 GLLKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGMA 113 >gi|254233367|ref|ZP_04926693.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|124603160|gb|EAY61435.1| conserved hypothetical protein [Mycobacterium tuberculosis C] Length=113 Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 111/113 (99%), Positives = 112/113 (99%), Gaps = 0/113 (0%) Query 3 MDELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIED 62 M ELDPHVA+ALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIED Sbjct 1 MAELDPHVAQALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIED 60 Query 63 GLLKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGMA 115 GLLKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGMA Sbjct 61 GLLKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGMA 113 >gi|306970130|ref|ZP_07482791.1| hypothetical protein TMIG_00237 [Mycobacterium tuberculosis SUMu009] gi|308352257|gb|EFP41108.1| hypothetical protein TMIG_00237 [Mycobacterium tuberculosis SUMu009] Length=114 Score = 189 bits (481), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 109/115 (95%), Positives = 111/115 (97%), Gaps = 1/115 (0%) Query 1 VSMDELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRI 60 +SMDELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVT+ G LTGLRI Sbjct 1 MSMDELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTM-GTSGLTGLRI 59 Query 61 EDGLLKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGMA 115 EDGLLKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGMA Sbjct 60 EDGLLKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGMA 114 >gi|240168360|ref|ZP_04747019.1| hypothetical protein MkanA1_03547 [Mycobacterium kansasii ATCC 12478] Length=115 Score = 180 bits (456), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 85/110 (78%), Positives = 97/110 (89%), Gaps = 0/110 (0%) Query 5 ELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGL 64 E+DPHVA+ L LAARFQ+ALDGTLNQMN GSFR TDE ETVEVTINGHQWLTG+RIE+GL Sbjct 5 EMDPHVAQTLALAARFQTALDGTLNQMNTGSFRGTDETETVEVTINGHQWLTGVRIEEGL 64 Query 65 LKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGM 114 LK++GAE V RVNEAL NAQ+AA+AYNDAAGEQL A LSA+S MN+G+ Sbjct 65 LKQVGAEVVGARVNEALMNAQSAATAYNDAAGEQLVAVLSALSDTMNKGL 114 >gi|183985427|ref|YP_001853718.1| hypothetical protein MMAR_5456 [Mycobacterium marinum M] gi|183178753|gb|ACC43863.1| conserved hypothetical protein [Mycobacterium marinum M] Length=115 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 81/110 (74%), Positives = 94/110 (86%), Gaps = 0/110 (0%) Query 5 ELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGL 64 E+DP VA+ L LAARFQSALDGTLNQMN G+FR D+ ETVEVTINGHQWLT +RI+DGL Sbjct 5 EMDPQVAQVLALAARFQSALDGTLNQMNTGNFRGKDDTETVEVTINGHQWLTAVRIDDGL 64 Query 65 LKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGM 114 LK++G E V+ RVN+AL NAQAAAS YNDAAGE+LTA LS+MS+ MN GM Sbjct 65 LKEVGPEVVSARVNQALKNAQAAASKYNDAAGEKLTAVLSSMSQTMNNGM 114 >gi|240170255|ref|ZP_04748914.1| hypothetical protein MkanA1_13153 [Mycobacterium kansasii ATCC 12478] Length=112 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 64/111 (58%), Positives = 88/111 (80%), Gaps = 0/111 (0%) Query 5 ELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGL 64 +LDP ARAL L ++FQSAL G L+QMNNG F+A+DE ++V VT+NG+QWLTG+RIE+GL Sbjct 2 KLDPTAARALALMSQFQSALQGRLHQMNNGIFKASDETKSVHVTLNGYQWLTGIRIENGL 61 Query 65 LKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGMA 115 LKK+GA+ VA+RVNEAL NAQ A S +++ +G+ L L+ +S A+N+ A Sbjct 62 LKKVGAQGVAERVNEALQNAQRAVSVFDEQSGQTLAETLATISGAINQPPA 112 >gi|183984319|ref|YP_001852610.1| hypothetical protein MMAR_4348 [Mycobacterium marinum M] gi|183177645|gb|ACC42755.1| conserved hypothetical protein [Mycobacterium marinum M] Length=112 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 60/111 (55%), Positives = 87/111 (79%), Gaps = 0/111 (0%) Query 5 ELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGL 64 +LDP ARALTL ++FQS L G + MNNG F+A+DE ++V+VT+NG+QWLTG+RIE+GL Sbjct 2 KLDPTAARALTLMSQFQSTLQGRFHHMNNGVFKASDETKSVQVTLNGYQWLTGIRIENGL 61 Query 65 LKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGMA 115 LK++GA+ VA+RVNEAL NAQ A S +++ +G+ L L+ +S A+++ A Sbjct 62 LKEVGAQGVAERVNEALQNAQRAVSVFDEQSGQTLVDTLATISAAISQPPA 112 >gi|15826896|ref|NP_301159.1| hypothetical protein ML0044 [Mycobacterium leprae TN] gi|221229374|ref|YP_002502790.1| hypothetical protein MLBr_00044 [Mycobacterium leprae Br4923] gi|2370276|emb|CAA75197.1| hypothetical protein [Mycobacterium leprae] gi|13092443|emb|CAC29552.1| ML0044 [Mycobacterium leprae] gi|219932481|emb|CAR70137.1| unnamed protein product [Mycobacterium leprae Br4923] Length=113 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 60/108 (56%), Positives = 81/108 (75%), Gaps = 0/108 (0%) Query 5 ELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGL 64 +LDP A+ + L +FQSALD N+M +G F+A+D+ +TVEVTING+QWLTG+RIE G Sbjct 2 DLDPTQAQTMALLGQFQSALDEQCNRMTDGVFKASDQEKTVEVTINGYQWLTGIRIESGA 61 Query 65 LKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNE 112 L++ G VA R+NEAL NAQ A+AYN+ +GEQL A LSA+S ++ E Sbjct 62 LREFGHAVVADRINEALQNAQGVATAYNEVSGEQLAARLSALSCSIGE 109 >gi|118619680|ref|YP_908012.1| hypothetical protein MUL_4590 [Mycobacterium ulcerans Agy99] gi|118571790|gb|ABL06541.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=95 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 54/92 (59%), Positives = 75/92 (82%), Gaps = 0/92 (0%) Query 5 ELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGL 64 +LDP ARALTL ++FQS L G + MNNG F+A+DE ++V+VT+NG+QWL G+RIE+GL Sbjct 4 KLDPTAARALTLMSQFQSTLQGRFHHMNNGVFKASDETKSVQVTLNGYQWLNGIRIENGL 63 Query 65 LKKLGAEAVAQRVNEALHNAQAAASAYNDAAG 96 LK++GA+ VA+RVNEAL NAQ A S +++ +G Sbjct 64 LKEVGAQGVAERVNEALQNAQRAVSVFDEQSG 95 >gi|183985405|ref|YP_001853696.1| hypothetical protein MMAR_5434 [Mycobacterium marinum M] gi|183178731|gb|ACC43841.1| conserved hypothetical protein [Mycobacterium marinum M] Length=112 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 54/108 (50%), Positives = 76/108 (71%), Gaps = 0/108 (0%) Query 5 ELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGL 64 LDP A L +F +AL +QMN G+F+A+D TV+VT+NG+ WLTG+RI+DGL Sbjct 2 NLDPTAAHLLAGLTQFHTALQNRFHQMNAGNFKASDNTHTVQVTLNGYNWLTGIRIQDGL 61 Query 65 LKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNE 112 LK+LG++ VA RVN+ALHNA+ A AY++AA L L+ +S A+N+ Sbjct 62 LKQLGSQGVAHRVNQALHNAKQAVHAYDNAANHALATTLATLSAAINQ 109 >gi|118618030|ref|YP_906362.1| hypothetical protein MUL_2549 [Mycobacterium ulcerans Agy99] gi|118570140|gb|ABL04891.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=115 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 56/110 (51%), Positives = 79/110 (72%), Gaps = 1/110 (0%) Query 5 ELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGL 64 ++ P VA AL A +FQSA + +++ N+GSF TDEA+TV+VT+NG QWLT L IE+GL Sbjct 4 QMHPQVAEALRQAQQFQSAFEDQMHRTNSGSFAGTDEAKTVDVTLNGRQWLTDLHIEEGL 63 Query 65 LKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGM 114 L +LGAEAV QR+NEAL +A A ASA +A +Q +L+ +S + +G+ Sbjct 64 L-RLGAEAVEQRINEALQDADAVASAGIEARQQQFLESLAGISSELQKGL 112 >gi|183981353|ref|YP_001849644.1| hypothetical protein MMAR_1330 [Mycobacterium marinum M] gi|183174679|gb|ACC39789.1| conserved hypothetical protein [Mycobacterium marinum M] Length=115 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 56/110 (51%), Positives = 79/110 (72%), Gaps = 1/110 (0%) Query 5 ELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGL 64 ++ P VA AL A +FQSA + +++ N+GSF TDEA+TV+VT+NG QWLT L IE+GL Sbjct 4 QMHPQVAEALRQAQQFQSAFEDQMHRTNSGSFVGTDEAKTVDVTLNGRQWLTDLHIEEGL 63 Query 65 LKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEGM 114 L +LGAEAV QR+NEAL +A A ASA +A +Q +L+ +S + +G+ Sbjct 64 L-RLGAEAVEQRINEALQDADAVASAGIEARQQQFLESLAGISSELQKGL 112 >gi|183985390|ref|YP_001853681.1| hypothetical protein MMAR_5419 [Mycobacterium marinum M] gi|183178716|gb|ACC43826.1| conserved hypothetical protein [Mycobacterium marinum M] Length=112 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 49/93 (53%), Positives = 67/93 (73%), Gaps = 0/93 (0%) Query 5 ELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGL 64 LDP A L +F +AL +QMN G+F+A+D TV+VT+NG+ WLTG+RI+DGL Sbjct 2 NLDPTAAHLLAGLTQFHTALQNRFHQMNAGNFKASDNTHTVQVTLNGYNWLTGIRIQDGL 61 Query 65 LKKLGAEAVAQRVNEALHNAQAAASAYNDAAGE 97 LK+LG++ VA RVN+ALHNA+ A AY++AA Sbjct 62 LKQLGSQGVAHRVNQALHNAKQAVHAYDNAANH 94 >gi|120401117|ref|YP_950946.1| hypothetical protein Mvan_0089 [Mycobacterium vanbaalenii PYR-1] gi|119953935|gb|ABM10940.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=114 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/104 (54%), Positives = 72/104 (70%), Gaps = 1/104 (0%) Query 4 DELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDG 63 D++ P VA L A R QS +D L++M SF ATDE +TVEVT+NGHQWL + I+DG Sbjct 3 DDMHPEVAAVLRQARRLQSLMDEQLDKMATESFTATDENDTVEVTLNGHQWLKDVYIQDG 62 Query 64 LLKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMS 107 LL +LGAE V QRVNEALH A A ASA DA E++ A ++ ++ Sbjct 63 LL-RLGAEEVEQRVNEALHKASAEASASIDADRERIDAVVAEIT 105 >gi|118468461|ref|YP_884497.1| hypothetical protein MSMEG_0081 [Mycobacterium smegmatis str. MC2 155] gi|118169748|gb|ABK70644.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=110 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/107 (50%), Positives = 72/107 (68%), Gaps = 1/107 (0%) Query 1 VSMDELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRI 60 +S D++ P VA L A R QS +D L++MN +F A DE +TVEVT+NGH LT + I Sbjct 1 MSDDDIHPQVAAVLRQAQRLQSVMDDQLHKMNTETFTAADETDTVEVTLNGHHHLTSVYI 60 Query 61 EDGLLKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMS 107 EDGLL +LGAE V R+NEAL A AAA+A +A E+L A ++ ++ Sbjct 61 EDGLL-RLGAETVEHRLNEALQKATAAATASIEADRERLDALVADIT 106 >gi|145221353|ref|YP_001132031.1| hypothetical protein Mflv_0758 [Mycobacterium gilvum PYR-GCK] gi|145213839|gb|ABP43243.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=114 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/104 (48%), Positives = 66/104 (64%), Gaps = 1/104 (0%) Query 4 DELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDG 63 D++ P VA L A R Q +D L +M GSF A DE +TVEVT+NGH WL + I+DG Sbjct 3 DDMHPEVAAVLKQARRLQELMDEQLEKMATGSFTAADETDTVEVTLNGHHWLKDVYIQDG 62 Query 64 LLKKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMS 107 LL +LG+E V RVNEAL A A A+ +A E+L A ++ ++ Sbjct 63 LL-RLGSETVEDRVNEALQKANAEATEAINADRERLDAVVAEIT 105 >gi|108797056|ref|YP_637253.1| hypothetical protein Mmcs_0075 [Mycobacterium sp. MCS] gi|119866141|ref|YP_936093.1| hypothetical protein Mkms_0084 [Mycobacterium sp. KMS] gi|108767475|gb|ABG06197.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119692230|gb|ABL89303.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=106 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/104 (48%), Positives = 71/104 (69%), Gaps = 1/104 (0%) Query 6 LDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGLL 65 + P VA L A + QS +D L++M + +F A+DE ETVEVT++GHQ LT + IEDGLL Sbjct 1 MHPQVAAVLAQAQQLQSIMDEQLHKMKHQTFTASDETETVEVTLDGHQQLTSVHIEDGLL 60 Query 66 KKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRA 109 ++ GA V QR+NEAL NA AASA +A E++ A ++ ++ + Sbjct 61 RQ-GAHVVEQRLNEALQNATEAASAAIEADRERIDARVAELTES 103 >gi|126432678|ref|YP_001068369.1| hypothetical protein Mjls_0065 [Mycobacterium sp. JLS] gi|126232478|gb|ABN95878.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=106 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/104 (47%), Positives = 71/104 (69%), Gaps = 1/104 (0%) Query 6 LDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGLL 65 + P VA L A + QS +D L++M + +F A+D+ ETVEVT++GHQ LT + IEDGLL Sbjct 1 MHPQVAAVLAQAQQLQSIMDEQLHKMKHQTFTASDQTETVEVTLDGHQQLTSVHIEDGLL 60 Query 66 KKLGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMSRA 109 ++ GA V QR+NEAL NA AASA +A E++ A ++ ++ + Sbjct 61 RQ-GAHVVEQRLNEALQNATEAASAAIEADRERIDARVAELTES 103 >gi|315441763|ref|YP_004074642.1| hypothetical protein Mspyr1_00730 [Mycobacterium sp. Spyr1] gi|315260066|gb|ADT96807.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1] Length=110 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/100 (48%), Positives = 63/100 (63%), Gaps = 1/100 (1%) Query 8 PHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGLLKK 67 P VA L A R Q +D L +M GSF A DE +TVEVT+NGH WL + I+DGLL + Sbjct 3 PEVAAVLKQARRLQELMDEQLEKMATGSFTAADETDTVEVTLNGHHWLKDVYIQDGLL-R 61 Query 68 LGAEAVAQRVNEALHNAQAAASAYNDAAGEQLTAALSAMS 107 LG+E V RVNEAL A A A+ +A E+L A ++ ++ Sbjct 62 LGSETVEDRVNEALQKANAEATEAINADRERLDAVVAEIT 101 >gi|74483044|gb|ABA10329.1| 57 kDa surface antigen protein [Mycobacterium tuberculosis] Length=524 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 35/35 (100%), Positives = 35/35 (100%), Gaps = 0/35 (0%) Query 24 LDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGL 58 LDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGL Sbjct 483 LDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGL 517 >gi|240171368|ref|ZP_04750027.1| hypothetical protein MkanA1_18796 [Mycobacterium kansasii ATCC 12478] Length=104 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/70 (42%), Positives = 44/70 (63%), Gaps = 5/70 (7%) Query 22 SALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGLLKKLGAEAVAQRVNEAL 81 S LD +++M+ +F AT + VEVT+NGH+ L GL I G+L +GA VA+ +NE + Sbjct 10 SLLDQQVHRMDAEAFTATHQTGAVEVTVNGHRRLIGLSINPGIL-GMGAHDVARMINETI 68 Query 82 HNAQAAASAY 91 +AA+ Y Sbjct 69 ----SAATDY 74 >gi|262170778|ref|ZP_06038456.1| membrane-associated zinc metalloprotease [Vibrio mimicus MB-451] gi|261891854|gb|EEY37840.1| membrane-associated zinc metalloprotease [Vibrio mimicus MB-451] Length=452 Score = 39.3 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 29/96 (31%), Positives = 41/96 (43%), Gaps = 2/96 (2%) Query 20 FQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGLLKKLGA--EAVAQRV 77 F + + + F T E V VT G L GL++ D LLK G E Q V Sbjct 203 FDPETESAMGALGFKPFTPTISTELVNVTPQGAGELAGLQVGDTLLKINGQAIEGWQQVV 262 Query 78 NEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEG 113 N N + + AGEQ+ L+ SR +++G Sbjct 263 NAIQSNPNVPITVLVERAGEQVELTLTPDSRELSQG 298 >gi|258627357|ref|ZP_05722141.1| Putative zinc metalloprotease [Vibrio mimicus VM603] gi|258580395|gb|EEW05360.1| Putative zinc metalloprotease [Vibrio mimicus VM603] Length=452 Score = 39.3 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 29/96 (31%), Positives = 41/96 (43%), Gaps = 2/96 (2%) Query 20 FQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGLLKKLGA--EAVAQRV 77 F + + + F T E V VT G L GL++ D LLK G E Q V Sbjct 203 FDPETESAMGALGFKPFTPTISTELVNVTPQGAGELAGLQVGDTLLKINGQAIEGWQQVV 262 Query 78 NEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEG 113 N N + + AGEQ+ L+ SR +++G Sbjct 263 NAIQSNPNVPITVLVERAGEQVELTLTPDSRELSQG 298 >gi|258621003|ref|ZP_05716037.1| Putative zinc metalloprotease [Vibrio mimicus VM573] gi|258586391|gb|EEW11106.1| Putative zinc metalloprotease [Vibrio mimicus VM573] gi|342325407|gb|EGU21187.1| hypothetical protein SX4_0542 [Vibrio mimicus SX-4] Length=452 Score = 39.3 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 29/96 (31%), Positives = 41/96 (43%), Gaps = 2/96 (2%) Query 20 FQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGLLKKLGA--EAVAQRV 77 F + + + F T E V VT G L GL++ D LLK G E Q V Sbjct 203 FDPETESAMGALGFKPFTPTISTELVNVTPQGAGELAGLQVGDTLLKINGQAIEGWQQVV 262 Query 78 NEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEG 113 N N + + AGEQ+ L+ SR +++G Sbjct 263 NAIQSNPNVPITVLVERAGEQVELTLTPDSRELSQG 298 >gi|262166330|ref|ZP_06034067.1| membrane-associated zinc metalloprotease [Vibrio mimicus VM223] gi|262026046|gb|EEY44714.1| membrane-associated zinc metalloprotease [Vibrio mimicus VM223] Length=452 Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 29/96 (31%), Positives = 40/96 (42%), Gaps = 2/96 (2%) Query 20 FQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGLLKKLGA--EAVAQRV 77 F + + + F T E V VT G L GL++ D LLK G E Q V Sbjct 203 FDPETESAMGALGFKPFTPTISTELVNVTPQGAGELAGLQVGDTLLKINGQAIEGWQQVV 262 Query 78 NEALHNAQAAASAYNDAAGEQLTAALSAMSRAMNEG 113 N N + AGEQ+ L+ SR +++G Sbjct 263 NAIQSNPNVPIRVLVERAGEQVELTLTPDSRELSQG 298 >gi|294883766|ref|XP_002771064.1| hypothetical protein Pmar_PMAR026039 [Perkinsus marinus ATCC 50983] gi|239874270|gb|EER02880.1| hypothetical protein Pmar_PMAR026039 [Perkinsus marinus ATCC 50983] Length=199 Score = 37.7 bits (86), Expect = 0.65, Method: Compositional matrix adjust. Identities = 22/79 (28%), Positives = 36/79 (46%), Gaps = 1/79 (1%) Query 3 MDELDPHVARALTLAARFQSALDGTLNQMNNGSFRATDEAETVEVTI-NGHQWLTGLRIE 61 +DE+ + + L AR+Q LD L N G ++ D+ TV T+ + H+W Sbjct 56 LDEIKALLNQHLANDARYQRELDFRLRIANIGPYKLDDDLRTVRCTVCDTHKWSIPRNER 115 Query 62 DGLLKKLGAEAVAQRVNEA 80 G +LG +V + A Sbjct 116 PGFFDRLGVFSVGDPIPSA 134 >gi|159480638|ref|XP_001698389.1| predicted protein [Chlamydomonas reinhardtii] gi|28207763|gb|AAO32624.1| CR084 protein [Chlamydomonas reinhardtii] gi|158282129|gb|EDP07882.1| predicted protein [Chlamydomonas reinhardtii] Length=157 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/70 (36%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query 15 TLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGLLKKLGAEAVA 74 T AR Q+ L T F DE ETV V ++G+Q G+ I L LGAE + Sbjct 67 TETARVQAELAAT-------EFEGYDEEETVRVIMSGNQEPKGVEITQAAL-DLGAEECS 118 Query 75 QRVNEALHNA 84 +R +A+ +A Sbjct 119 KRTTDAMRDA 128 >gi|302831828|ref|XP_002947479.1| hypothetical protein VOLCADRAFT_73224 [Volvox carteri f. nagariensis] gi|300267343|gb|EFJ51527.1| hypothetical protein VOLCADRAFT_73224 [Volvox carteri f. nagariensis] Length=159 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 27/77 (36%), Positives = 39/77 (51%), Gaps = 10/77 (12%) Query 15 TLAARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRI-EDGLLKKLGAEAV 73 T AR QS L N F DE ETV VT++G+Q + I ++ L+ GAE Sbjct 69 TETARVQSELA-------NTEFEGYDEEETVRVTMSGNQEPRSVEITQEALVA--GAEEC 119 Query 74 AQRVNEALHNAQAAASA 90 ++R EA+ +A + A Sbjct 120 SRRTTEAMRDAHKKSVA 136 >gi|153956410|ref|YP_001397175.1| hypothetical protein CKL_3826 [Clostridium kluyveri DSM 555] gi|189040307|sp|A5N3V8.1|Y3826_CLOK5 RecName: Full=UPF0133 protein CKL_3826 gi|146349268|gb|EDK35804.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] Length=114 Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust. Identities = 24/90 (27%), Positives = 44/90 (49%), Gaps = 4/90 (4%) Query 17 AARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGLLKKLGAEAVAQR 76 A +FQ ++ +++ N F AT E + V +NG + + ++I+ ++ E + Sbjct 22 AQKFQKQMEDMQSELENKEFSATAGGEAITVVVNGKKQIVSIKIKPEVVDPEDVEMLEDL 81 Query 77 VNEALHNAQAAASAYNDAAGE--QLTAALS 104 V A + QA SA + A E +LT L+ Sbjct 82 VLTACN--QALKSAEDQTASEMKKLTGGLN 109 >gi|219856722|ref|YP_002473844.1| hypothetical protein CKR_3379 [Clostridium kluyveri NBRC 12016] gi|219570446|dbj|BAH08430.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length=120 Score = 33.9 bits (76), Expect = 8.9, Method: Compositional matrix adjust. Identities = 24/90 (27%), Positives = 44/90 (49%), Gaps = 4/90 (4%) Query 17 AARFQSALDGTLNQMNNGSFRATDEAETVEVTINGHQWLTGLRIEDGLLKKLGAEAVAQR 76 A +FQ ++ +++ N F AT E + V +NG + + ++I+ ++ E + Sbjct 28 AQKFQKQMEDMQSELENKEFSATAGGEAITVVVNGKKQIVSIKIKPEVVDPEDVEMLEDL 87 Query 77 VNEALHNAQAAASAYNDAAGE--QLTAALS 104 V A + QA SA + A E +LT L+ Sbjct 88 VLTACN--QALKSAEDQTASEMKKLTGGLN 115 Lambda K H 0.312 0.123 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131043835296 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40