BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3889c
Length=276
Score E
Sequences producing significant alignments: (Bits) Value
gi|15611025|ref|NP_218406.1| hypothetical protein Rv3889c [Mycob... 541 4e-152
gi|254233375|ref|ZP_04926701.1| hypothetical protein TBCG_03816 ... 540 9e-152
gi|296167005|ref|ZP_06849418.1| conserved hypothetical protein [... 440 1e-121
gi|254821255|ref|ZP_05226256.1| hypothetical protein MintA_15057... 439 3e-121
gi|342860124|ref|ZP_08716776.1| hypothetical protein MCOL_14635 ... 438 3e-121
gi|240168369|ref|ZP_04747028.1| hypothetical protein MkanA1_0359... 433 1e-119
gi|41406260|ref|NP_959096.1| hypothetical protein MAP0162 [Mycob... 416 3e-114
gi|289572148|ref|ZP_06452375.1| hypothetical protein TBJG_04026 ... 339 3e-91
gi|333988692|ref|YP_004521306.1| hypothetical protein JDM601_005... 332 5e-89
gi|333989614|ref|YP_004522228.1| hypothetical protein JDM601_097... 244 7e-63
gi|31795062|ref|NP_857555.1| hypothetical protein Mb3918c [Mycob... 137 1e-30
gi|119855162|ref|YP_935767.1| hypothetical protein Mkms_5777 [My... 65.1 1e-08
gi|296164028|ref|ZP_06846651.1| conserved protein [Mycobacterium... 58.5 1e-06
gi|54022788|ref|YP_117030.1| hypothetical protein nfa8210 [Nocar... 51.2 2e-04
gi|296165450|ref|ZP_06847986.1| conserved hypothetical protein [... 49.3 7e-04
gi|118470815|ref|YP_885033.1| DNA-binding protein [Mycobacterium... 46.2 0.006
gi|15827810|ref|NP_302073.1| hypothetical protein ML1540 [Mycoba... 44.7 0.014
gi|336457558|gb|EGO36563.1| hypothetical protein MAPs_21140 [Myc... 43.5 0.032
gi|183985412|ref|YP_001853703.1| hypothetical protein MMAR_5441 ... 43.1 0.040
gi|308232596|ref|ZP_07416567.2| hypothetical protein TMAG_00613 ... 42.4 0.069
gi|294995553|ref|ZP_06801244.1| hypothetical protein Mtub2_13837... 42.4 0.069
gi|240168345|ref|ZP_04747004.1| hypothetical protein MkanA1_0347... 42.4 0.072
gi|340628838|ref|YP_004747290.1| hypothetical protein MCAN_38881... 42.4 0.082
gi|15608931|ref|NP_216310.1| hypothetical protein Rv1794 [Mycoba... 42.4 0.083
gi|15611002|ref|NP_218383.1| hypothetical protein Rv3866 [Mycoba... 42.4 0.085
gi|342861302|ref|ZP_08717950.1| hypothetical protein MCOL_20561 ... 41.6 0.14
gi|298527340|ref|ZP_07014749.1| conserved hypothetical protein [... 40.8 0.20
gi|254820295|ref|ZP_05225296.1| hypothetical protein MintA_10221... 40.4 0.26
gi|118472873|ref|YP_884475.1| hypothetical protein MSMEG_0057 [M... 40.4 0.29
gi|240170253|ref|ZP_04748912.1| hypothetical protein MkanA1_1314... 40.0 0.36
gi|296164782|ref|ZP_06847343.1| conserved hypothetical protein [... 40.0 0.38
gi|41407607|ref|NP_960443.1| hypothetical protein MAP1509 [Mycob... 40.0 0.40
gi|183982683|ref|YP_001850974.1| hypothetical protein MMAR_2676 ... 39.7 0.48
gi|169629313|ref|YP_001702962.1| hypothetical protein MAB_2227c ... 39.3 0.66
gi|118618464|ref|YP_906796.1| hypothetical protein MUL_3081 [Myc... 39.3 0.68
gi|169245927|gb|ACA50948.1| conserved protein [Mycobacterium mar... 38.9 0.77
gi|296138069|ref|YP_003645312.1| hypothetical protein Tpau_0330 ... 38.5 1.1
gi|240172854|ref|ZP_04751513.1| hypothetical protein MkanA1_2631... 38.5 1.2
gi|297160610|gb|ADI10322.1| hypothetical protein SBI_07202 [Stre... 37.0 3.4
gi|108797043|ref|YP_637240.1| hypothetical protein Mmcs_0062 [My... 37.0 3.4
gi|126432665|ref|YP_001068356.1| hypothetical protein Mjls_0052 ... 37.0 3.6
gi|291302865|ref|YP_003514143.1| lanthionine synthetase C family... 36.6 4.6
gi|222625651|gb|EEE59783.1| hypothetical protein OsJ_12294 [Oryz... 36.2 5.2
gi|297601549|ref|NP_001051039.2| Os03g0708700 [Oryza sativa Japo... 36.2 5.3
gi|218193615|gb|EEC76042.1| hypothetical protein OsI_13222 [Oryz... 36.2 5.8
gi|108797358|ref|YP_637555.1| putative DNA-binding protein [Myco... 35.8 6.5
gi|120401098|ref|YP_950927.1| hypothetical protein Mvan_0070 [My... 35.8 7.2
gi|240173074|ref|ZP_04751732.1| hypothetical protein MkanA1_2742... 35.4 9.4
>gi|15611025|ref|NP_218406.1| hypothetical protein Rv3889c [Mycobacterium tuberculosis H37Rv]
gi|15843520|ref|NP_338557.1| hypothetical protein MT4004 [Mycobacterium tuberculosis CDC1551]
gi|121639800|ref|YP_980024.1| hypothetical protein BCG_3945c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
73 more sequence titles
Length=276
Score = 541 bits (1394), Expect = 4e-152, Method: Compositional matrix adjust.
Identities = 276/276 (100%), Positives = 276/276 (100%), Gaps = 0/276 (0%)
Query 1 MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN 60
MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN
Sbjct 1 MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN 60
Query 61 ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA 120
ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA
Sbjct 61 ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA 120
Query 121 SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL 180
SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL
Sbjct 121 SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL 180
Query 181 QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR 240
QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR
Sbjct 181 QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR 240
Query 241 YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV 276
YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV
Sbjct 241 YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV 276
>gi|254233375|ref|ZP_04926701.1| hypothetical protein TBCG_03816 [Mycobacterium tuberculosis C]
gi|124603168|gb|EAY61443.1| hypothetical protein TBCG_03816 [Mycobacterium tuberculosis C]
Length=276
Score = 540 bits (1391), Expect = 9e-152, Method: Compositional matrix adjust.
Identities = 275/276 (99%), Positives = 276/276 (100%), Gaps = 0/276 (0%)
Query 1 MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN 60
MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN
Sbjct 1 MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN 60
Query 61 ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA 120
ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGN+VRLYPAGTA
Sbjct 61 ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNVVRLYPAGTA 120
Query 121 SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL 180
SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL
Sbjct 121 SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL 180
Query 181 QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR 240
QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR
Sbjct 181 QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR 240
Query 241 YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV 276
YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV
Sbjct 241 YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV 276
>gi|296167005|ref|ZP_06849418.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897635|gb|EFG77228.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=276
Score = 440 bits (1131), Expect = 1e-121, Method: Compositional matrix adjust.
Identities = 226/276 (82%), Positives = 254/276 (93%), Gaps = 0/276 (0%)
Query 1 MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN 60
MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDT ERALRHPV AEL A GALD+AGN
Sbjct 1 MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTPERALRHPVVAELKAAGALDEAGN 60
Query 61 ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA 120
DPM+REWLTVLLRRDLGLLVTI VPG E TRAAICRFA+WWVVLERHG+L+RLYPAGTA
Sbjct 61 VDPMIREWLTVLLRRDLGLLVTITVPGREATRAAICRFASWWVVLERHGDLIRLYPAGTA 120
Query 121 SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL 180
S+E+GA +LVVGQVERLCGVAE APL+PVT+D ++LL +VRDA +LR++LLSQ LDVDQL
Sbjct 121 SNESGASDLVVGQVERLCGVAEVAPLKPVTLDTEQLLASVRDAASLRTFLLSQNLDVDQL 180
Query 181 QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR 240
Q+V+MAADP RSAHA +V LQAGVGP++ ARI VGDSTV+I+DT AGR+CVE+V SGQRR
Sbjct 181 QIVSMAADPARSAHAAIVGLQAGVGPDEMARIAVGDSTVSIIDTPAGRVCVENVISGQRR 240
Query 241 YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV 276
YQ+LSPGSRSDI GAVQRLIRRLPAG++WYSYRRVV
Sbjct 241 YQILSPGSRSDISGAVQRLIRRLPAGEDWYSYRRVV 276
>gi|254821255|ref|ZP_05226256.1| hypothetical protein MintA_15057 [Mycobacterium intracellulare
ATCC 13950]
Length=276
Score = 439 bits (1128), Expect = 3e-121, Method: Compositional matrix adjust.
Identities = 218/276 (79%), Positives = 251/276 (91%), Gaps = 0/276 (0%)
Query 1 MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN 60
MLTTTVDGLWVLQA+TGVEQTCPELGLRP+LPRLDT ERAL HP AA+L+A GALD+AGN
Sbjct 1 MLTTTVDGLWVLQAITGVEQTCPELGLRPMLPRLDTPERALGHPAAADLIAAGALDEAGN 60
Query 61 ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA 120
DPM+REWLTVLLRRDLGL+V +GVPG EPTRA+I RFATWWVVLERHG +VRLYPAGTA
Sbjct 61 VDPMIREWLTVLLRRDLGLVVMMGVPGREPTRASINRFATWWVVLERHGEMVRLYPAGTA 120
Query 121 SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL 180
S+E+ A ELVVGQ+ERLCGVAEAAPLRP+T+D ++LL++VRD +LR++LL QRLD DQL
Sbjct 121 SNESSASELVVGQIERLCGVAEAAPLRPITLDTEQLLNSVRDTASLRAFLLEQRLDADQL 180
Query 181 QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR 240
Q+V AADP RSAHA +VALQAGVGP++ AR+ VGD+TV+IVDT GR+C+ESV SGQRR
Sbjct 181 QVVLTAADPARSAHANIVALQAGVGPDELARVAVGDATVSIVDTPGGRVCIESVISGQRR 240
Query 241 YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV 276
YQ+LSPGSRSDIGGAVQRLIRRLPAGDEW+SYRRVV
Sbjct 241 YQILSPGSRSDIGGAVQRLIRRLPAGDEWHSYRRVV 276
>gi|342860124|ref|ZP_08716776.1| hypothetical protein MCOL_14635 [Mycobacterium colombiense CECT
3035]
gi|342132502|gb|EGT85731.1| hypothetical protein MCOL_14635 [Mycobacterium colombiense CECT
3035]
Length=276
Score = 438 bits (1127), Expect = 3e-121, Method: Compositional matrix adjust.
Identities = 218/276 (79%), Positives = 250/276 (91%), Gaps = 0/276 (0%)
Query 1 MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN 60
MLTTTVDGLWVLQA+TGVEQTCPELGLRP+LPRLDT ERA HP AAEL+A GALD+AGN
Sbjct 1 MLTTTVDGLWVLQALTGVEQTCPELGLRPMLPRLDTPERAKGHPAAAELVAAGALDEAGN 60
Query 61 ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA 120
DPM+REWLTVLLRRD+ LL IGVPG EPTRA+ICRFATWWVVLERHG++VRLYPAGTA
Sbjct 61 VDPMIREWLTVLLRRDIALLAMIGVPGREPTRASICRFATWWVVLERHGDMVRLYPAGTA 120
Query 121 SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL 180
+EA A +L+VGQ+ERLCGVAEAAPL+PVT+D ++LL++VRD +LRS+LL QRLD DQL
Sbjct 121 GNEASASDLLVGQIERLCGVAEAAPLKPVTLDTEQLLNSVRDTASLRSFLLEQRLDADQL 180
Query 181 QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR 240
QMV AADP RSAHA +V LQAGVGP++ ARI VG+STV+IVDT AGRIC+ESVTSGQR+
Sbjct 181 QMVLTAADPARSAHANIVGLQAGVGPDEQARIAVGESTVSIVDTPAGRICIESVTSGQRQ 240
Query 241 YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV 276
YQ+LSPGSR+DIGGA+QRLIRRLPAGDEW+SYRRVV
Sbjct 241 YQILSPGSRTDIGGAIQRLIRRLPAGDEWHSYRRVV 276
>gi|240168369|ref|ZP_04747028.1| hypothetical protein MkanA1_03592 [Mycobacterium kansasii ATCC
12478]
Length=276
Score = 433 bits (1114), Expect = 1e-119, Method: Compositional matrix adjust.
Identities = 234/276 (85%), Positives = 256/276 (93%), Gaps = 0/276 (0%)
Query 1 MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN 60
MLTTTVDGLWVLQAVTGVEQ CPELGLRPLLPRLDTAERAL+HPVAA+L A GALD++GN
Sbjct 1 MLTTTVDGLWVLQAVTGVEQICPELGLRPLLPRLDTAERALQHPVAADLKAAGALDESGN 60
Query 61 ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA 120
ADPM+REWLTVLLRRDLGLL+ I VPGGEPTRAAICRFATWWVVLERHG LVRLYPAG A
Sbjct 61 ADPMIREWLTVLLRRDLGLLLLINVPGGEPTRAAICRFATWWVVLERHGELVRLYPAGMA 120
Query 121 SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL 180
S+E AGELVVGQ+E+LCGVAEAAPLRPVTVDA+ LL +VRD G+LRS+L+SQRLDVDQL
Sbjct 121 SNETVAGELVVGQIEQLCGVAEAAPLRPVTVDAEALLESVRDPGSLRSFLVSQRLDVDQL 180
Query 181 QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR 240
QM+TMAADP RSAHA +V LQAG+GPEK+AR+L+GD+ V I+DT AGRICVESV SGQRR
Sbjct 181 QMLTMAADPARSAHAAIVGLQAGIGPEKTARLLIGDTAVTIIDTQAGRICVESVMSGQRR 240
Query 241 YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV 276
YQVLSPGSR DIGGAVQRLIRRLPAGDEWYSYRRVV
Sbjct 241 YQVLSPGSRGDIGGAVQRLIRRLPAGDEWYSYRRVV 276
>gi|41406260|ref|NP_959096.1| hypothetical protein MAP0162 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118466894|ref|YP_879449.1| hypothetical protein MAV_0155 [Mycobacterium avium 104]
gi|254773211|ref|ZP_05214727.1| hypothetical protein MaviaA2_00816 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41394608|gb|AAS02479.1| hypothetical protein MAP_0162 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118168181|gb|ABK69078.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336457495|gb|EGO36502.1| hypothetical protein MAPs_22310 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=276
Score = 416 bits (1068), Expect = 3e-114, Method: Compositional matrix adjust.
Identities = 221/276 (81%), Positives = 246/276 (90%), Gaps = 0/276 (0%)
Query 1 MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN 60
MLTTTVDGLWVLQAVTG+EQTCPELGLRPLLPRLDT ERALRHP AAEL+A GALD+AGN
Sbjct 1 MLTTTVDGLWVLQAVTGIEQTCPELGLRPLLPRLDTPERALRHPAAAELVAAGALDEAGN 60
Query 61 ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA 120
DPM+REWLTVLLRRDLGLLV I VPG EP+RA+ICRFATWWVVLERH LVRLYPAGTA
Sbjct 61 VDPMIREWLTVLLRRDLGLLVMIAVPGREPSRASICRFATWWVVLERHDQLVRLYPAGTA 120
Query 121 SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL 180
S EA A E+VVGQ+ERLCGVAEAAPLRP+T+D ++LL +V D +LR++LL QRLD DQL
Sbjct 121 SSEAAASEIVVGQIERLCGVAEAAPLRPITLDTEQLLASVHDTASLRAFLLEQRLDADQL 180
Query 181 QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR 240
Q V AAD RSAHA +VALQAGVGP++ AR+ VGDS+V+IVDT GR+C+ESV SGQRR
Sbjct 181 QTVLTAADSARSAHANIVALQAGVGPDELARVAVGDSSVSIVDTPGGRVCIESVVSGQRR 240
Query 241 YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV 276
YQ+LSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV
Sbjct 241 YQILSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV 276
>gi|289572148|ref|ZP_06452375.1| hypothetical protein TBJG_04026 [Mycobacterium tuberculosis T17]
gi|289545903|gb|EFD49550.1| hypothetical protein TBJG_04026 [Mycobacterium tuberculosis T17]
Length=174
Score = 339 bits (869), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 173/174 (99%), Positives = 174/174 (100%), Gaps = 0/174 (0%)
Query 103 VVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRD 162
+VLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRD
Sbjct 1 MVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRD 60
Query 163 AGTLRSYLLSQRLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIV 222
AGTLRSYLLSQRLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIV
Sbjct 61 AGTLRSYLLSQRLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIV 120
Query 223 DTAAGRICVESVTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV 276
DTAAGRICVESVTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV
Sbjct 121 DTAAGRICVESVTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV 174
>gi|333988692|ref|YP_004521306.1| hypothetical protein JDM601_0052 [Mycobacterium sp. JDM601]
gi|333484660|gb|AEF34052.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=282
Score = 332 bits (850), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 181/282 (65%), Positives = 227/282 (81%), Gaps = 6/282 (2%)
Query 1 MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN 60
MLTTT+DGLWVLQAVTG+E CPELGLRPLLPRLDTA+RA++HP+A EL +GALD G
Sbjct 1 MLTTTLDGLWVLQAVTGIETLCPELGLRPLLPRLDTADRAVQHPIAEELTEIGALDGQGE 60
Query 61 ADPMVREWLTVLLRRDLGLLVTIGVPG---GEP---TRAAICRFATWWVVLERHGNLVRL 114
ADPM+REWLTV++RRD+ LL+ + PG G+P TR +I RFA+WWVVLERH +RL
Sbjct 61 ADPMIREWLTVIMRRDVALLLQLNFPGRPYGDPQHMTRVSINRFASWWVVLERHDQEIRL 120
Query 115 YPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQR 174
YPAGTA+D+A A +LVVGQ+ERLCGV EAAPLRPVT+D ELL VRD LR+YL +QR
Sbjct 121 YPAGTATDQAAAADLVVGQIERLCGVTEAAPLRPVTLDTKELLEQVRDRDGLRNYLAAQR 180
Query 175 LDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESV 234
LD+DQ Q + MA+DP S A +VALQ G GP++ AR+ +GD++V I DT AGR+CVE++
Sbjct 181 LDIDQQQTLLMASDPEVSGQANIVALQPGAGPDELARMAIGDTSVLISDTPAGRVCVENI 240
Query 235 TSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV 276
+G RRYQ++SPGSR+D+ A+ RLIRRLPAG +W+S+RRVV
Sbjct 241 DNGGRRYQIVSPGSRADVANAILRLIRRLPAGADWHSHRRVV 282
>gi|333989614|ref|YP_004522228.1| hypothetical protein JDM601_0974 [Mycobacterium sp. JDM601]
gi|333485582|gb|AEF34974.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=276
Score = 244 bits (624), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 131/276 (48%), Positives = 174/276 (64%), Gaps = 0/276 (0%)
Query 1 MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN 60
MLTTT+DGLWVLQ + GVE PELGLRP++PR++T + AL HPVA EL G +D AG
Sbjct 1 MLTTTIDGLWVLQVLAGVEVVAPELGLRPVMPRVETPQLALAHPVALELREHGVIDAAGA 60
Query 61 ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA 120
D V EWLTVL RRD+ LL+ + P +A + RFA WWVV ER G+ VR+ AGT+
Sbjct 61 VDRTVVEWLTVLARRDIALLLRVQDPRRVEAQAVLARFAQWWVVAERCGDGVRIGGAGTS 120
Query 121 SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL 180
E AG ++ Q+ERLCGV RPV V+ LL A ++++YL SQ +QL
Sbjct 121 VSEGEAGAVLQAQIERLCGVVPPVQFRPVDVETTALLAAAGSPESVQNYLTSQPFSAEQL 180
Query 181 QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR 240
Q++ A DPTRS ++ ALQAGV + R + V+I+D AGR+ VE S R+
Sbjct 181 QILLAATDPTRSTQTSIAALQAGVETGRPTRTHIHPGAVSIIDIPAGRVVVEHSVSAGRQ 240
Query 241 YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV 276
++ PG+ S+I AV +++RRLPA EW+S RR V
Sbjct 241 QMLVVPGTASNIAAAVNKMLRRLPAHHEWHSSRRQV 276
>gi|31795062|ref|NP_857555.1| hypothetical protein Mb3918c [Mycobacterium bovis AF2122/97]
gi|31620660|emb|CAD96104.1| HYPOTHETICAL PROTEIN Mb3918c [Mycobacterium bovis AF2122/97]
Length=72
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/68 (100%), Positives = 68/68 (100%), Gaps = 0/68 (0%)
Query 1 MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN 60
MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN
Sbjct 1 MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN 60
Query 61 ADPMVREW 68
ADPMVREW
Sbjct 61 ADPMVREW 68
>gi|119855162|ref|YP_935767.1| hypothetical protein Mkms_5777 [Mycobacterium sp. KMS]
gi|119697880|gb|ABL94952.1| hypothetical protein Mkms_5777 [Mycobacterium sp. KMS]
Length=288
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/284 (30%), Positives = 124/284 (44%), Gaps = 38/284 (13%)
Query 2 LTTTVDGLWVLQAVTGVEQTCPELGLRPLLP----RLDTAERALRHPVAA-----ELMAV 52
LTTTV G+WVLQA+ GVE L L+P +P L A P+A L+
Sbjct 3 LTTTVGGVWVLQALLGVESMPTALRLKPFIPSVHHELIVETTAGPVPIAETAEYLSLVQA 62
Query 53 GALDQAGNADPMVREWLTVLLRRDLGLLVTIGVPGGE-------PT----RAAICRFATW 101
GA+ +G D VR+W+TVL R D ++TI P G+ PT +CR+ W
Sbjct 63 GAISPSGAVDDPVRDWMTVLGRPDRQAVLTIRRPSGQAVHNGELPTVEERVVVVCRYRRW 122
Query 102 WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADEL---LH 158
+ R GN + + G D A +L+ + GVA A + V + AD + L
Sbjct 123 LAMAARDGNEMVVDAVGETDDPAVQADLMCQTLMPALGVAAPADIDGVNIPADLMQSTLE 182
Query 159 AVRDAGTLRSYLLSQRLDVDQLQMVTMAADPTR---SAHATLVALQAGVGPEKSARILVG 215
A G + RL + Q +AA TR SA A + + + R+
Sbjct 183 AAVPQGRDATIAAMSRLGLQPQQAEVLAA-ATRLDDSAMAVAMVIDHDIAQHVHPRV--- 238
Query 216 DSTVAIVDTAAGRICVESVTSGQ-RRYQVLSPGS----RSDIGG 254
V + DT GR+ + + TS +++ L P + R D+ G
Sbjct 239 ---VTVADTEFGRVSITTSTSADGKQWLSLWPATTDAVREDLHG 279
>gi|296164028|ref|ZP_06846651.1| conserved protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295900576|gb|EFG79959.1| conserved protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=313
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/313 (29%), Positives = 131/313 (42%), Gaps = 52/313 (16%)
Query 2 LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA 61
L+TT +GLW+ A+ GV Q P L +RP+ T HP E++ + Q G
Sbjct 12 LSTTSEGLWLTAALCGVAQLPPALKIRPIGAVQATIA---AHP-GMEVLENAGICQGGEV 67
Query 62 DPMVREWLTVLLRRDLGLLVTIGVPGGEPTR---------------AAICRFATWW---- 102
DP V W+ L R D+ + VTI P P R A A W+
Sbjct 68 DPSVASWVRALGRPDVEIDVTITRPEIRPERLEGPPAVFTAPEDAIEAAEALARWYAQRP 127
Query 103 ----VVLERHGN----LVRLY-PAGTASDEA-----GAGELVVGQVERLCGVAEAAPLRP 148
V L R N RL+ P SDE G E+ V+ + G A+ A
Sbjct 128 PQRVVTLCRRDNAWVAAARLWRPGQDTSDEVVVTPLGGTEIAHVVVDTI-GPADPAQFHG 186
Query 149 VTVDA---DELLHA--VRDAGTLRSYLLSQRLDVDQLQMVTMAADPTRSAHATLVALQAG 203
+ +A + +L A A + + L+ L V Q ++V AD + A + A +
Sbjct 187 INSEAAVLNTVLSAWQANPAIDIIAGLVEVGLSVPQARLVEAVAD-RGTTRAVIGAAEFS 245
Query 204 V-GPEKSARILVGDSTVAIVDTAAGRICV-ESVTSGQRRYQVLSPGSRSDIGGAVQRLIR 261
+ GP ++ V + DT GR+ V SV R++ L PG+ I AV L+
Sbjct 246 ISGPARAPM------AVTVADTLIGRVVVSNSVGPDGRQWTTLLPGADHAIHTAVVELLE 299
Query 262 RLPAGDEWYSYRR 274
LP+G W +++R
Sbjct 300 TLPSGRGWATHQR 312
>gi|54022788|ref|YP_117030.1| hypothetical protein nfa8210 [Nocardia farcinica IFM 10152]
gi|54014296|dbj|BAD55666.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=264
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/271 (28%), Positives = 116/271 (43%), Gaps = 17/271 (6%)
Query 1 MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN 60
M T T DG+ L G++ LG+ P D A R VA +L G +D G
Sbjct 1 MTTLTNDGVLALAERLGIQTMPLVLGIGPRQQTYDAWTAAQRRAVA-DLTGAGLIDGYGE 59
Query 61 ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA 120
DP + + + VL + D L+ + G PTR + + R G+ +R+ PA
Sbjct 60 VDPELADAMYVLAQPDRELVARVYPGDGAPTRLCLALRGERHALALRRGDDIRIEPAW-- 117
Query 121 SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADEL---LHAVRDAGTLRSYLLSQRLDV 177
SDE+G+ +V + R G AE A + P + A EL L A R + + + +
Sbjct 118 SDESGS--ALVAALLRALGPAEPADVAPFSAPAAELAERLSAARTSADFTDAVYALGVAE 175
Query 178 DQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIV-DTAAGRICV-ESVT 235
+A + R A+A +VA G + A+V +T GRI V +
Sbjct 176 RDAPRYGLAFESCR-AYAEIVAYAHVDG------VTTRPPCAAVVYETGRGRIVVAPGIA 228
Query 236 SGQRRYQVLSPGSRSDIGGAVQRLIRRLPAG 266
Q+ + ++PG+ + A+ LI LP G
Sbjct 229 PDQQVWSTVTPGTDHRVAQAISGLIETLPGG 259
>gi|296165450|ref|ZP_06847986.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899190|gb|EFG78660.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=286
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/258 (24%), Positives = 107/258 (42%), Gaps = 29/258 (11%)
Query 1 MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDT----AERALRHPVAA-----ELMA 51
+L +V+ +WVLQA+ GVE L L+P +P + A + P+ L+
Sbjct 3 VLNASVECVWVLQALLGVESMPISLRLKPYIPAAHSDFIVETDAGKVPLTGTAQYQSLVQ 62
Query 52 VGALDQAGNADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAA----------ICRFATW 101
G +D G D VR+W+TVL R + +++TI P T + +CR+ +
Sbjct 63 AGVIDANGRVDDAVRDWMTVLGRAEREVVLTIRRPDQPATHDSGATVHERVMVVCRYGRY 122
Query 102 WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR 161
+ R G + + G + EL+ + G A + + V D + A+
Sbjct 123 LAMAARDGEEMVIGGVGETDEPTRQVELMCQMLVPAFGDHPPADIEGINVPKDMMQMAID 182
Query 162 DAGTLRSYLLS--QRLDVD--QLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDS 217
AG + +RL + ++++V AA +SA A + + R+L
Sbjct 183 AAGHTPEGMAGALRRLGLGPWEVEVVQAAATLDQSAMAVVAVIDHCPDVRPHPRVLT--- 239
Query 218 TVAIVDTAAGRICVESVT 235
+ DT GR+ + T
Sbjct 240 ---VADTEYGRLSFTTTT 254
>gi|118470815|ref|YP_885033.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
gi|118172102|gb|ABK72998.1| putative DNA-binding protein [Mycobacterium smegmatis str. MC2
155]
Length=293
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 70/270 (26%), Positives = 102/270 (38%), Gaps = 17/270 (6%)
Query 5 TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAER-ALRHPVAAELMAVGALDQAGNADP 63
T D W L V G L + P P D ++R A +AEL +G ++ AG DP
Sbjct 9 TTDQAWCLADVLGAGSYPWVLAITP--PYSDHSQRSAFLAAQSAELTRMGVVNSAGAVDP 66
Query 64 MVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTASDE 123
V +W+T + R L + G+ R + R + VV R+ LV TA D
Sbjct 67 RVAQWITTVCRATQWLDLRFVSGPGDLLRGMVARRSEETVVALRNAQLVTF----TAMDI 122
Query 124 AGAGELVVGQVERLCG--VAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQLQ 181
LV L G A +R+ L L +
Sbjct 123 GHQHALVPVLTAGLSGRKPARFDDFALPAAAGARADEQIRNGAPLAEVLEFLGVPPSARP 182
Query 182 MVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRRY 241
+V D R + +VA G + + + V+I+DT GRI V + +
Sbjct 183 LVESVFD-GRRTYVEIVA-----GEHRDGHRVTTEVGVSIIDTPHGRILVHPTKAFDGEW 236
Query 242 -QVLSPGSRSDIGGAVQRLIRRLPAGDEWY 270
+PGS I AV+RL LP+G W+
Sbjct 237 ISTFTPGSADAIAMAVERLTASLPSG-SWF 265
>gi|15827810|ref|NP_302073.1| hypothetical protein ML1540 [Mycobacterium leprae TN]
gi|221230287|ref|YP_002503703.1| hypothetical protein MLBr_01540 [Mycobacterium leprae Br4923]
gi|4455687|emb|CAB36587.1| hypothetical protein MLCB596.31 [Mycobacterium leprae]
gi|13093362|emb|CAC30491.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933394|emb|CAR71635.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=300
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 73/307 (24%), Positives = 129/307 (43%), Gaps = 49/307 (15%)
Query 2 LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA 61
+T VDG W+LQA+ + PEL RP + D+ + HP A + G + GN
Sbjct 10 ITVNVDGFWLLQALLDIRHVAPELRCRPFV-STDSNDWLHEHPGMAVMREQGIVVN-GNV 67
Query 62 DPMVREWLTVLLRRDLGLLVTIG--------------------VPGGEPTRAAICRFATW 101
+ V + V DL ++ + +P E R + R +
Sbjct 68 NEHVATRMRVFAAPDLEVVALLSRGKLLYGAVNDENQPPGSRDIPENE-FRVVLVRRGSH 126
Query 102 WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR 161
W R GN + + A D A LV+ +E + A+ A + V V +E+L A +
Sbjct 127 WASAVRVGNDITIDDVAIA-DSASITSLVMDGLESIHH-ADPAAINAVNVPLEEMLEATK 184
Query 162 ---DAG-TLRSYLLSQRLDVDQLQMVTMA---ADPTRSAHATLVALQA---GVGPEKSAR 211
DAG + S +R+ + + + +DP +A A + A Q GP
Sbjct 185 SWQDAGFNVFSGRDLRRMGISAATVAALGQALSDP--AAEAAVYARQYRDDAKGPSA--- 239
Query 212 ILVGDSTVAIVDTAAGRICV--ESVTSG-QRRYQVLSPGSRSDIGGAVQRLIRRLPAGDE 268
S +++ D+++GRI + ++ T+G + + P + + ++ ++ LP GD
Sbjct 240 -----SVLSLKDSSSGRIAIYQQARTAGLGDAWLAICPATPQLVQLGLKTVLDTLPYGD- 293
Query 269 WYSYRRV 275
W ++ RV
Sbjct 294 WKTHSRV 300
>gi|336457558|gb|EGO36563.1| hypothetical protein MAPs_21140 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=300
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/180 (26%), Positives = 72/180 (40%), Gaps = 25/180 (13%)
Query 2 LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA 61
+T VDG W+LQA+ + PEL RP + D+ +R HP A + G + +
Sbjct 10 ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSNDRLNDHPGMAVMREQGIV-EGDQV 67
Query 62 DPMVREWLTVLLRRDLGLLVTIG--------------------VPGGEPTRAAICRFATW 101
+ V + VL DL ++ + +P E R + R
Sbjct 68 NEQVAARMRVLAAPDLEVIALLSRGKLAYGVIDDQNQPPGSRDIPDNE-FRVVLARRGQH 126
Query 102 WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR 161
WV R G + + A D A LV+ +E + AE A + V V +E+L A +
Sbjct 127 WVSAVRVGGEITVDDVAVA-DSASIASLVIDALESIHH-AEPAAINAVNVPLEEMLEATK 184
>gi|183985412|ref|YP_001853703.1| hypothetical protein MMAR_5441 [Mycobacterium marinum M]
gi|183178738|gb|ACC43848.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=279
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 69/264 (27%), Positives = 109/264 (42%), Gaps = 20/264 (7%)
Query 5 TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM 64
T+DG+ V+ + LG+RP +P+ D E + VA +L A G LD G P
Sbjct 22 TIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRE-IVWDQVARDLTAQGVLDHNGQPHPA 80
Query 65 VREWLTVLLRRDLGLLVTIGVP--GGEPTRAAICRFATWWVVLERHGNLVRLYPAGTASD 122
V + L R D L GG R +CR V+ R G+++ L +
Sbjct 81 VAAMVDTLSRADRTLEGRWWRRDVGGVMVRFVVCRKGERHVIAVRDGDMLVLQ---LVAP 137
Query 123 EAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQLQM 182
G + G V + G AE A + P+T A EL +A L Y L+ ++
Sbjct 138 RVG----LAGMVTAVLGTAEPANVEPLTGIASELGECT-NAAQLTRYGLTPTTARLYTEI 192
Query 183 VTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRRYQ 242
VT +P + +VA + G + + ++D+A GR+ G Y
Sbjct 193 VT---NP--KSWVEIVASERHPGGTTTHT----KAAAGVLDSAHGRLVSLPRQVGGELYG 243
Query 243 VLSPGSRSDIGGAVQRLIRRLPAG 266
PG+ ++ A+ L+ LP+G
Sbjct 244 SFLPGTEQNLQRALDSLLELLPSG 267
>gi|308232596|ref|ZP_07416567.2| hypothetical protein TMAG_00613 [Mycobacterium tuberculosis SUMu001]
gi|308369263|ref|ZP_07417096.2| hypothetical protein TMBG_02406 [Mycobacterium tuberculosis SUMu002]
gi|308371485|ref|ZP_07425109.2| hypothetical protein TMCG_01376 [Mycobacterium tuberculosis SUMu003]
21 more sequence titles
Length=285
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 69/279 (25%), Positives = 109/279 (40%), Gaps = 39/279 (13%)
Query 5 TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM 64
T+DG+ V+ + LG+RP +P+ D + V +L A G LD G P
Sbjct 24 TIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ-VQRDLTAQGVLDLHGEPQPT 82
Query 65 VREWLTVL-----------LRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVR 113
V E + L RRD+G G R +CR V+ R G+++
Sbjct 83 VAEMVETLGRPDRTLEGRWWRRDIG---------GVMVRFVVCRRGDRHVIAARDGDMLV 133
Query 114 LYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQ 173
L + + G + G V + G AE A + P+T A EL A L Y ++
Sbjct 134 LQ---LVAPQVG----LAGMVTAVLGPAEPANVEPLTGVATELAECTT-ASQLTQYGIAP 185
Query 174 RLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVES 233
+ +PT +VA Q G + D+ ++D+ GR+
Sbjct 186 ---ASARVYAEIVGNPT--GWVEIVASQRHPGGTTTQT----DAAAGVLDSKLGRLVSLP 236
Query 234 VTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY 272
G Y PG++ ++ A+ L+ LPAG W +
Sbjct 237 RRVGGDLYGSFLPGTQQNLERALDGLLELLPAG-AWLDH 274
>gi|294995553|ref|ZP_06801244.1| hypothetical protein Mtub2_13837 [Mycobacterium tuberculosis
210]
Length=268
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 69/279 (25%), Positives = 109/279 (40%), Gaps = 39/279 (13%)
Query 5 TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM 64
T+DG+ V+ + LG+RP +P+ D + V +L A G LD G P
Sbjct 7 TIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ-VQRDLTAQGVLDLHGEPQPT 65
Query 65 VREWLTVL-----------LRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVR 113
V E + L RRD+G G R +CR V+ R G+++
Sbjct 66 VAEMVETLGRPDRTLEGRWWRRDIG---------GVMVRFVVCRRGDRHVIAARDGDMLV 116
Query 114 LYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQ 173
L + + G + G V + G AE A + P+T A EL A L Y ++
Sbjct 117 LQ---LVAPQVG----LAGMVTAVLGPAEPANVEPLTGVATELAECTT-ASQLTQYGIAP 168
Query 174 RLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVES 233
+ +PT +VA Q G + D+ ++D+ GR+
Sbjct 169 ---ASARVYAEIVGNPT--GWVEIVASQRHPGGTTTQT----DAAAGVLDSKLGRLVSLP 219
Query 234 VTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY 272
G Y PG++ ++ A+ L+ LPAG W +
Sbjct 220 RRVGGDLYGSFLPGTQQNLERALDGLLELLPAG-AWLDH 257
>gi|240168345|ref|ZP_04747004.1| hypothetical protein MkanA1_03472 [Mycobacterium kansasii ATCC
12478]
Length=283
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 71/271 (27%), Positives = 112/271 (42%), Gaps = 23/271 (8%)
Query 5 TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM 64
T+DG+ VL + LG+RP +P+ D E V +L A G LD G P
Sbjct 22 TIDGMLVLADRLHLVDFPVALGIRPNIPQDDLREIVWDQ-VRRDLTAQGVLDHNGYPHPT 80
Query 65 VREWLTVLLRRDLGLLVTIG--VPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTASD 122
V + L R D L GG R +CR V+ R+G+L+ L +
Sbjct 81 VASMVDTLSRPDRTLEARWWRRDVGGVMVRFVVCRKDDRHVIAVRNGDLLVLQ---LVAP 137
Query 123 EAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQLQM 182
+ G + G V + G A+ A + P+T A EL A L Y L+ ++
Sbjct 138 QVG----LAGMVTAVLGTADPASVEPLTGIASELAECTT-AAQLTRYGLAPTAARIYTEI 192
Query 183 VTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGR-ICVESVTSGQRRY 241
V+ + +VA Q G + + ++D+A GR + + + SG+ Y
Sbjct 193 VS-----NPDSWVEIVASQRHPGGTTTHT----KAAAGVLDSAHGRVVSLPRIVSGE-LY 242
Query 242 QVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY 272
PG+ ++ A+ L+ LPAG W +
Sbjct 243 GSFLPGTPQNLQLALDALVELLPAG-SWLDH 272
>gi|340628838|ref|YP_004747290.1| hypothetical protein MCAN_38881 [Mycobacterium canettii CIPT
140010059]
gi|340007028|emb|CCC46219.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=283
Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 69/279 (25%), Positives = 109/279 (40%), Gaps = 39/279 (13%)
Query 5 TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM 64
T+DG+ V+ + LG+RP +P+ D + V +L A G LD G P
Sbjct 22 TIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ-VQRDLTAQGVLDVHGEPQPT 80
Query 65 VREWLTVL-----------LRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVR 113
V E + L RRD+G G R +CR V+ R G+++
Sbjct 81 VAEMVETLGRPDRTLEGRWWRRDIG---------GVMVRFVVCRRGDRHVIAARDGDMLV 131
Query 114 LYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQ 173
L + + G + G V + G AE A + P+T A EL A L Y ++
Sbjct 132 LQ---LVAPQVG----LAGMVTAVLGPAEPANVEPLTGVATELAECTT-ASQLTQYGIAP 183
Query 174 RLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVES 233
+ +PT +VA Q G + D+ ++D+ GR+
Sbjct 184 ---ASARVYAEIVGNPT--GWVEIVASQRHPGGTTTQT----DAAAGVLDSKLGRLVSLP 234
Query 234 VTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY 272
G Y PG++ ++ A+ L+ LPAG W +
Sbjct 235 RRVGGDLYGSFLPGTQQNLERALDGLLELLPAG-AWLDH 272
>gi|15608931|ref|NP_216310.1| hypothetical protein Rv1794 [Mycobacterium tuberculosis H37Rv]
gi|15841263|ref|NP_336300.1| hypothetical protein MT1843 [Mycobacterium tuberculosis CDC1551]
gi|31792982|ref|NP_855475.1| hypothetical protein Mb1822 [Mycobacterium bovis AF2122/97]
80 more sequence titles
Length=300
Score = 42.4 bits (98), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 48/181 (27%), Positives = 74/181 (41%), Gaps = 27/181 (14%)
Query 2 LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVG-ALDQAGN 60
+T VDG W+LQA+ + PEL RP + D+ + HP A + G ++ A N
Sbjct 10 ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSNDWLNEHPGMAVMREQGIVVNDAVN 68
Query 61 ADPMVREWLTVLLRRDLGLLVTIG--------------------VPGGEPTRAAICRFAT 100
R + VL DL ++ + +P E R + R
Sbjct 69 EQVAAR--MKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNE-FRVVLARRGQ 125
Query 101 WWVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAV 160
WV R GN + + T SD A LV+ +E + A+ A + V V +E+L A
Sbjct 126 HWVSAVRVGNDITVDDV-TVSDSASIAALVMDGLESIHH-ADPAAINAVNVPMEEMLEAT 183
Query 161 R 161
+
Sbjct 184 K 184
>gi|15611002|ref|NP_218383.1| hypothetical protein Rv3866 [Mycobacterium tuberculosis H37Rv]
gi|31795040|ref|NP_857533.1| hypothetical protein Mb3896 [Mycobacterium bovis AF2122/97]
gi|121639784|ref|YP_980008.1| hypothetical protein BCG_3929 [Mycobacterium bovis BCG str. Pasteur
1173P2]
50 more sequence titles
Length=283
Score = 42.4 bits (98), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 69/279 (25%), Positives = 109/279 (40%), Gaps = 39/279 (13%)
Query 5 TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM 64
T+DG+ V+ + LG+RP +P+ D + V +L A G LD G P
Sbjct 22 TIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ-VQRDLTAQGVLDLHGEPQPT 80
Query 65 VREWLTVL-----------LRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVR 113
V E + L RRD+G G R +CR V+ R G+++
Sbjct 81 VAEMVETLGRPDRTLEGRWWRRDIG---------GVMVRFVVCRRGDRHVIAARDGDMLV 131
Query 114 LYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQ 173
L + + G + G V + G AE A + P+T A EL A L Y ++
Sbjct 132 LQ---LVAPQVG----LAGMVTAVLGPAEPANVEPLTGVATELAECTT-ASQLTQYGIAP 183
Query 174 RLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVES 233
+ +PT +VA Q G + D+ ++D+ GR+
Sbjct 184 ---ASARVYAEIVGNPT--GWVEIVASQRHPGGTTTQT----DAAAGVLDSKLGRLVSLP 234
Query 234 VTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY 272
G Y PG++ ++ A+ L+ LPAG W +
Sbjct 235 RRVGGDLYGSFLPGTQQNLERALDGLLELLPAG-AWLDH 272
>gi|342861302|ref|ZP_08717950.1| hypothetical protein MCOL_20561 [Mycobacterium colombiense CECT
3035]
gi|342131202|gb|EGT84483.1| hypothetical protein MCOL_20561 [Mycobacterium colombiense CECT
3035]
Length=300
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/179 (27%), Positives = 71/179 (40%), Gaps = 23/179 (12%)
Query 2 LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA 61
+T VDG W+LQA+ + PEL RP + D+++ HP A + G ++
Sbjct 10 ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSSDWLNEHPGMAVMREQGIVEN-DQV 67
Query 62 DPMVREWLTVLLRRDL-------------GLLVTIGVPGG------EPTRAAICRFATWW 102
+ V + VL DL G+L P G R + R W
Sbjct 68 NEHVAARMKVLAAPDLEVVALLSRGKLAYGVLDDENQPPGSRDIPDNEFRVVLARRGQHW 127
Query 103 VVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR 161
V R G + + A D A LV+ +E + AE A + V V +E+L A +
Sbjct 128 VSAVRVGGEITVDDVAVA-DSASIASLVIDALESIHH-AEPAAINAVNVPLEEMLEATK 184
>gi|298527340|ref|ZP_07014749.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|298497134|gb|EFI32428.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=283
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 69/279 (25%), Positives = 108/279 (39%), Gaps = 39/279 (13%)
Query 5 TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM 64
T+DG+ V+ + LG+RP +P+ D + V +L A G LD G P
Sbjct 22 TIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ-VQRDLTAQGVLDLHGEPQPT 80
Query 65 VREWLTVL-----------LRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVR 113
V E + L RRD+G G R +CR V+ R G+++
Sbjct 81 VAEMVETLGRPDRTLEGRWWRRDIG---------GVMVRFVVCRRGDRHVIAARDGDMLV 131
Query 114 LYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQ 173
L + + G + G V + G AE A + P+T A EL A L Y ++
Sbjct 132 LQ---LVAPQVG----LAGMVTAVLGPAEPANVEPLTGVATELAECTT-ASQLTQYGIAP 183
Query 174 RLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVES 233
+ +PT VA Q G + D+ ++D+ GR+
Sbjct 184 ---ASARVYAEIVGNPT--GWVETVASQRHPGGTTTQT----DAAAGVLDSKLGRLVSLP 234
Query 234 VTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY 272
G Y PG++ ++ A+ L+ LPAG W +
Sbjct 235 RRVGGDLYGSFLPGTQQNLERALDGLLELLPAG-AWLDH 272
>gi|254820295|ref|ZP_05225296.1| hypothetical protein MintA_10221 [Mycobacterium intracellulare
ATCC 13950]
Length=300
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/179 (27%), Positives = 70/179 (40%), Gaps = 23/179 (12%)
Query 2 LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA 61
+T VDG W+LQA+ + PEL RP + D+ + HP A + G ++
Sbjct 10 ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSNDWLNEHPGMAVMREQGIVEN-DEV 67
Query 62 DPMVREWLTVLLRRDL-------------GLLVTIGVPGG------EPTRAAICRFATWW 102
+ V + VL DL G+L P G R + R W
Sbjct 68 NEHVAARMKVLAAPDLEVVALLSRGKLAYGVLDDENQPPGSRDIPDNEFRVVLARRGQHW 127
Query 103 VVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR 161
V R G + + A D A LV+ +E + AE A + V V +E+L A +
Sbjct 128 VSAVRVGGEITVDDVAVA-DSASIASLVIDALESIHH-AEPAAINAVNVPLEEMLEATK 184
>gi|118472873|ref|YP_884475.1| hypothetical protein MSMEG_0057 [Mycobacterium smegmatis str.
MC2 155]
gi|118174160|gb|ABK75056.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=282
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/145 (31%), Positives = 63/145 (44%), Gaps = 8/145 (5%)
Query 5 TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM 64
T+DG+ V+ G+ P +G+R +P+ D + + V +L A G LD GN P
Sbjct 23 TIDGMLVIADKLGLTDFPPSMGIRLNIPQPDL-RKVVWEQVERDLSAQGVLDVYGNPHPE 81
Query 65 VREWLTVLLRRDLGLLVTIG--VPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTASD 122
V + L R D L GG+ R +CR VV R +L+ L
Sbjct 82 VAAMVDTLARADRTLECRWWRRDAGGKMIRFVVCRKGGRHVVAARDNDLLVLQRVAPQIG 141
Query 123 EAGAGELVVGQ-----VERLCGVAE 142
AG V+G+ VE L GVA+
Sbjct 142 LAGMVMTVLGEGSPANVEPLTGVAD 166
>gi|240170253|ref|ZP_04748912.1| hypothetical protein MkanA1_13143 [Mycobacterium kansasii ATCC
12478]
Length=275
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 68/253 (27%), Positives = 98/253 (39%), Gaps = 31/253 (12%)
Query 25 LGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPMVREWLTVLLRRDLGLLVTIG 84
LG+RP +P+ + + + V +L A G LDQ G P V + L R D L
Sbjct 42 LGIRPNIPQKELPD-VVWDRVRRDLTAQGVLDQYGQPHPTVAAMVDTLSRPDRTLEGRWW 100
Query 85 --VPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTASDEAGAGELVVG-----QVERL 137
GG R +CR VV R G ++ L AG V+G VE L
Sbjct 101 RRYVGGAMARFVVCRKGDRHVVAARDGQMLVLQLVEPQVGLAGMITTVLGPALPANVEPL 160
Query 138 CGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQLQMVTMAADPTRSAHATL 197
GVA L T A H V A T R + + +P S+ +
Sbjct 161 AGVASE--LAECTTAAPPARHGV-PAATTRVF-------------TEIVNNP--SSWVEI 202
Query 198 VALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRRYQVLSPGSRSDIGGAVQ 257
VA Q G + D+ ++D+ GR+ G Y PG++ ++ A+
Sbjct 203 VASQRHSGGTTTQT----DAAAGVLDSTLGRLVSLPRCVGGELYGCFLPGTQQNLQRALD 258
Query 258 RLIRRLPAGDEWY 270
L+ LPAG W+
Sbjct 259 SLLELLPAG-AWF 270
>gi|296164782|ref|ZP_06847343.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899859|gb|EFG79304.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=300
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 25/180 (13%)
Query 2 LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA 61
+T VDG W+LQA+ + PEL RP + D+ + HP A + G ++
Sbjct 10 ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSNDWLNEHPGMAVMREQGIVEN-DQV 67
Query 62 DPMVREWLTVLLRRDLGLLVTIG--------------------VPGGEPTRAAICRFATW 101
+ V + VL DL ++ + +P E R + R
Sbjct 68 NEHVAARMRVLAAPDLEVIALLSRGKLLYGVVDDENQPPGSRDIPDNE-FRVVLARRGQH 126
Query 102 WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR 161
WV R G+ + + A D A LV+ +E + AE A + V V +E+L A +
Sbjct 127 WVSAVRVGSDITVDDVAIA-DSASIASLVLDALESIHH-AEPAAINAVNVPLEEMLEATK 184
>gi|41407607|ref|NP_960443.1| hypothetical protein MAP1509 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118462612|ref|YP_882106.1| hypothetical protein MAV_2920 [Mycobacterium avium 104]
gi|254775396|ref|ZP_05216912.1| hypothetical protein MaviaA2_12106 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41395960|gb|AAS03826.1| hypothetical protein MAP_1509 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118163899|gb|ABK64796.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=300
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 71/180 (40%), Gaps = 25/180 (13%)
Query 2 LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA 61
+T VDG W+LQA+ + PEL RP + D+ + HP A + G + +
Sbjct 10 ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSNDWLNDHPGMAVMREQGIV-EGDQV 67
Query 62 DPMVREWLTVLLRRDLGLLVTIG--------------------VPGGEPTRAAICRFATW 101
+ V + VL DL ++ + +P E R + R
Sbjct 68 NEQVAARMRVLAAPDLEVIALLSRGKLAYGVIDDQNQPPGSRDIPDNE-FRVVLARRGQH 126
Query 102 WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR 161
WV R G + + A D A LV+ +E + AE A + V V +E+L A +
Sbjct 127 WVSAVRVGGEITVDDVAVA-DSASIASLVIDALESIHH-AEPAAINAVNVPLEEMLEATK 184
>gi|183982683|ref|YP_001850974.1| hypothetical protein MMAR_2676 [Mycobacterium marinum M]
gi|183176009|gb|ACC41119.1| conserved protein [Mycobacterium marinum M]
Length=300
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 25/180 (13%)
Query 2 LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA 61
+T VDG W+LQA+ + PEL RP + D+ + HP A + G +
Sbjct 10 ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSNDWLNEHPGMAVMREQGIV-VGDTV 67
Query 62 DPMVREWLTVLLRRDLGLLVTIG--------------------VPGGEPTRAAICRFATW 101
+ V + VL DL ++ + +P E R + R
Sbjct 68 NEQVAARMRVLAAPDLEVVALLSRGKLLYGVVDNEDQPPGSRDIPDNE-FRVVLARRGQH 126
Query 102 WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR 161
WV R GN + + + SD A LV+ +E + A+ A + V V +E+L A +
Sbjct 127 WVSAVRVGNDITVDDV-SVSDSASIAALVIDGLESIHH-ADPAAINAVNVPLEEMLEATK 184
>gi|169629313|ref|YP_001702962.1| hypothetical protein MAB_2227c [Mycobacterium abscessus ATCC
19977]
gi|169241280|emb|CAM62308.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=287
Score = 39.3 bits (90), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 80/288 (28%), Positives = 115/288 (40%), Gaps = 36/288 (12%)
Query 5 TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERA-LRHPVAAELMAVGALDQAGNADP 63
TVD W L A T T P + L +P D A+RA EL G L+ G DP
Sbjct 14 TVDQAWFL-ADTLSAGTFPWV-LAVTVPFRDEAQRAGFNAQRVQELTRAGILEPDGTVDP 71
Query 64 MVREWLTVLLRRDLGL---LVTIGVPGGEPTRAAICRFAT----WWVVLERHGNLVRLYP 116
V W+ + R D L V G + R I R + VV R+ +L+
Sbjct 72 AVAGWIRTVCRPDRWLELRYVAAGSENPDVMRGIIARKQSQGRAQTVVSLRNAHLITF-- 129
Query 117 AGTASDEAGAGELVVGQVERLCGVAEAAPLR------PVTV--DADELLHAVRDAGTLRS 168
T D + LV V G+ AP R P V ADE L + +
Sbjct 130 --TVVDADDSSALVPSVV---AGLRWRAPARFPEFTLPTNVGAKADEQLRSGASLADVMG 184
Query 169 YLLSQRLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGR 228
YL Q V +A + +VA Q ++++ + +++VDT+AGR
Sbjct 185 YLGVP----PAAQNVVESAFVGNRNYVEVVAGQRDSTTQQTSEV-----GISVVDTSAGR 235
Query 229 ICVESVTSGQRRY-QVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRV 275
I V +G + +PG+ I AV++L+ LP G W+ RV
Sbjct 236 ILVSPHRAGDGTWLSTFAPGAPFAIAVAVEQLMATLPNG-HWFPDARV 282
>gi|118618464|ref|YP_906796.1| hypothetical protein MUL_3081 [Mycobacterium ulcerans Agy99]
gi|118570574|gb|ABL05325.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=300
Score = 39.3 bits (90), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 25/180 (13%)
Query 2 LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA 61
+T VDG W+LQA+ + PEL RP + D+ + HP A + G +
Sbjct 10 ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSNDWLNEHPGMAVMREQGIV-VGDTL 67
Query 62 DPMVREWLTVLLRRDLGLLVTIG--------------------VPGGEPTRAAICRFATW 101
+ V + VL DL ++ + +P E R + R
Sbjct 68 NEQVAARMRVLAAPDLEVVALLSRGKLLYGVVDNEDQPPGSRDIPDNE-FRVVLARRGQH 126
Query 102 WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR 161
WV R GN + + + SD A LV+ +E + A+ A + V V +E+L A +
Sbjct 127 WVSAVRVGNDITVDDV-SVSDSASIAALVIDGLESIHH-ADPAAINAVNVPLEEMLEATK 184
>gi|169245927|gb|ACA50948.1| conserved protein [Mycobacterium marinum DL240490]
Length=314
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 74/323 (23%), Positives = 120/323 (38%), Gaps = 71/323 (21%)
Query 2 LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA 61
L+TT +GLW+ A+ V + P L +RP+ + + + E + + G
Sbjct 12 LSTTSEGLWLTAALCNVAKLPPALKIRPI----GSVQATITDHPGIEALENAGICGGGVV 67
Query 62 DPMVREWLTVL-----------LRRDLGLLVTIGVPG---------------------GE 89
DP V W+T L RR++ G P
Sbjct 68 DPDVAAWVTTLGRPDIEVDVVATRREMPADRLAGPPAIFAAPDDAVAAAEALAQWHAQRP 127
Query 90 PTRA-AICRFATWWVVLERHGNLVRLYPAGTASDEAGAGELVVGQVER-------LCGVA 141
P R A+CR WV RL+ G G ++VV V + +
Sbjct 128 PQRVVALCRRDNTWVAA------ARLWSPG----HDGCDDVVVSPVNGDDIAQVVIDALG 177
Query 142 EAAPLRPVTVDADELL--------HAVRDAGTLRSYLLSQRLDVDQLQMVTMAADPTRSA 193
A P R ++++ A + + S + L V Q ++V +AD +
Sbjct 178 PADPARFHGINSEAAALATALTTWQANPNIDIVTSLVERVGLSVPQARVVEASAD-DGAT 236
Query 194 HATLVALQAGV-GPEKSARILVGDSTVAIVDTAAGRICVES-VTSGQRRYQVLSPGSRSD 251
A + A Q + GP + V + DT GR+ V + V R++ L PGS +
Sbjct 237 RAAITATQFSIDGPA------LAPHAVTVADTTLGRVVVSTTVGPDGRKWTTLLPGSEAA 290
Query 252 IGGAVQRLIRRLPAGDEWYSYRR 274
I A L+ LP+G W +++R
Sbjct 291 IRTAAIELLETLPSGLNWRTHQR 313
>gi|296138069|ref|YP_003645312.1| hypothetical protein Tpau_0330 [Tsukamurella paurometabola DSM
20162]
gi|296026203|gb|ADG76973.1| hypothetical protein Tpau_0330 [Tsukamurella paurometabola DSM
20162]
Length=287
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/153 (30%), Positives = 67/153 (44%), Gaps = 5/153 (3%)
Query 5 TVDGLWVLQAVTGVEQTCP-ELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADP 63
++D L +L + V + P L + P + R D + A+ V L+A G +D G DP
Sbjct 16 SIDELSLLMRLADVTELAPIVLAVHPNVYRPDD-QSAVDLAVLPGLIAAGLVDADGAIDP 74
Query 64 MVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTASDE 123
V WL L + + + G R AI R VV+ RH +L+ L G +D
Sbjct 75 EVARWLRALQAPAAEIALRV-FDGDSALRGAIVRHDDLVVVVFRHDDLLTL--QGYRTDG 131
Query 124 AGAGELVVGQVERLCGVAEAAPLRPVTVDADEL 156
VV V R+ G + A +T+ A EL
Sbjct 132 EDFDSTVVDPVWRVLGSCDPADFDSLTLGAAEL 164
>gi|240172854|ref|ZP_04751513.1| hypothetical protein MkanA1_26312 [Mycobacterium kansasii ATCC
12478]
Length=300
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/180 (25%), Positives = 71/180 (40%), Gaps = 25/180 (13%)
Query 2 LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA 61
+T VDG W+LQA+ + PEL RP + D + HP A + G +
Sbjct 10 ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDNNDWLNEHPGMAVMREQGIV-VGDTV 67
Query 62 DPMVREWLTVLLRRDLGLLVTIG--------------------VPGGEPTRAAICRFATW 101
+ V + VL DL ++ + +P E R + R
Sbjct 68 NEQVAARMRVLAAPDLEVVALLSRGKLLYGVVDDENQPPGSRDIPDNE-FRVVLARRGQH 126
Query 102 WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR 161
WV R GN + + + +D A LV+ +E + A+ A + V V +E+L A +
Sbjct 127 WVSAVRVGNDITVDDV-SVTDSASIAALVIDGLESIHH-ADPAAINAVNVPLEEMLEATK 184
>gi|297160610|gb|ADI10322.1| hypothetical protein SBI_07202 [Streptomyces bingchenggensis
BCW-1]
Length=519
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/162 (28%), Positives = 69/162 (43%), Gaps = 18/162 (11%)
Query 79 LLVTIGVPGG------EPTRAAICRFATWWVVLERHGNLVRL---YPAGTAS---DEAGA 126
LL G+ GG E T C +V+ + N + L Y A AS +E A
Sbjct 353 LLSKFGMEGGKYEADCEATDVGGCSE----IVVNKSANKLYLGTDYRASAASGPSNEIVA 408
Query 127 GELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQLQMVTMA 186
+L G+V AE PL PV++D D L A ++A TL R+D + +
Sbjct 409 IDLKTGKVTAKADGAEGGPLVPVSLDKDGSLIAYQEA-TLSQGSAVWRVDTKSYEKKKLM 467
Query 187 ADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGR 228
+P +A V+L V R+ +G+++ T +G+
Sbjct 468 QNPEETAFIESVSLHHQV-IYAGGRLYIGNTSATKPSTDSGK 508
>gi|108797043|ref|YP_637240.1| hypothetical protein Mmcs_0062 [Mycobacterium sp. MCS]
gi|119866128|ref|YP_936080.1| hypothetical protein Mkms_0071 [Mycobacterium sp. KMS]
gi|108767462|gb|ABG06184.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119692217|gb|ABL89290.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=282
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 69/286 (25%), Positives = 114/286 (40%), Gaps = 53/286 (18%)
Query 5 TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM 64
T+DG+ V+ P LG+R +P+ D + + VA +L G L+ G+ P
Sbjct 23 TIDGMLVIADRMSASDFPPSLGIRLNIPQPDL-RKIVWDQVARDLTEQGVLNFYGDPHPE 81
Query 65 VREWLTVL-----------LRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLV- 112
V + L RRDL GG+ R +CR VV R ++
Sbjct 82 VAAMVDTLSRSDRVLEGRWWRRDL---------GGKMVRFVVCRKGDRHVVAARDDEMLV 132
Query 113 --RLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSY- 169
R+ P + G +V + G A A + P+T A +L R A L++Y
Sbjct 133 LQRIAP------QIGLANMVT----TVLGTAPPADVEPLTGVAAKLAQC-RTANELQAYG 181
Query 170 --LLSQRLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAG 227
L S R D + ++P T G G + + + G ++D+ G
Sbjct 182 IALTSARAYAD------IISEPASWVELTATERHPG-GTQTTTDVAAG-----VLDSPHG 229
Query 228 RI-CVESVTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY 272
RI + SG+ Y PG++ ++ A+ L+ LP+ W+ +
Sbjct 230 RIVSIPRRVSGE-LYGSFLPGTQENLQRALDGLVDFLPS-KTWFDH 273
>gi|126432665|ref|YP_001068356.1| hypothetical protein Mjls_0052 [Mycobacterium sp. JLS]
gi|126232465|gb|ABN95865.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=282
Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 67/285 (24%), Positives = 110/285 (39%), Gaps = 51/285 (17%)
Query 5 TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM 64
T+DG+ V+ P LG+R +P+ D + + VA +L G L+ G+ P
Sbjct 23 TIDGMLVIADRMSASDFPPSLGIRLNIPQPDL-RKIVWDQVARDLTEQGVLNFYGDPHPE 81
Query 65 VREWLTVL-----------LRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLV- 112
V + L RRDL GG+ R +CR VV R ++
Sbjct 82 VAAMVDTLSRSDRVLEGRWWRRDL---------GGKMVRFVVCRKGDRHVVAARDDEMLV 132
Query 113 --RLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSY- 169
R+ P + G +V + G A A + P+T A +L R A L++Y
Sbjct 133 LQRIAP------QIGLANMVT----TVLGTAPPADVEPLTGVAAKLAQC-RTANELQAYG 181
Query 170 --LLSQRLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAG 227
L S R D + ++P T G G + + + G ++D+ G
Sbjct 182 IALTSARAYAD------IISEPASWVELTATERHPG-GTQTTTDVAAG-----VLDSPHG 229
Query 228 RICVESVTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY 272
RI Y PG++ ++ A+ L+ LP+ W+ +
Sbjct 230 RIVSIPRRVSGELYGSFLPGTQENLQRALDGLVDFLPS-KTWFDH 273
>gi|291302865|ref|YP_003514143.1| lanthionine synthetase C family protein [Stackebrandtia nassauensis
DSM 44728]
gi|290572085|gb|ADD45050.1| Lanthionine synthetase C family protein [Stackebrandtia nassauensis
DSM 44728]
Length=409
Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/82 (31%), Positives = 35/82 (43%), Gaps = 3/82 (3%)
Query 101 WWVVLERHGNLVRLYPAGTASD---EAGAGELVVGQVERLCGVAEAAPLRPVTVDADELL 157
WW+ E H NL R++P+G A+ AG L + + G + + AD LL
Sbjct 184 WWMPAENHPNLARIHPSGAATTGLAHGVAGPLALLATAHVAGWSVPGQAEGIDHAADWLL 243
Query 158 HAVRDAGTLRSYLLSQRLDVDQ 179
RD GT + LD Q
Sbjct 244 DWRRDDGTWPPSVTGDELDTAQ 265
>gi|222625651|gb|EEE59783.1| hypothetical protein OsJ_12294 [Oryza sativa Japonica Group]
Length=928
Score = 36.2 bits (82), Expect = 5.2, Method: Composition-based stats.
Identities = 23/83 (28%), Positives = 41/83 (50%), Gaps = 0/83 (0%)
Query 141 AEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQLQMVTMAADPTRSAHATLVAL 200
+E+AP P+ ++ + LH + D + S S L+ +L V SAH +L L
Sbjct 523 SESAPDTPIHIEDIDGLHELPDHKAMTSDTKSVDLESIELVSVDQLKSALASAHKSLSTL 582
Query 201 QAGVGPEKSARILVGDSTVAIVD 223
+ E+SA + D T+A+++
Sbjct 583 YTELENERSAAAIAADETMAMIN 605
>gi|297601549|ref|NP_001051039.2| Os03g0708700 [Oryza sativa Japonica Group]
gi|62733556|gb|AAX95673.1| Protein of unknown function, DUF593, putative [Oryza sativa Japonica
Group]
gi|108710692|gb|ABF98487.1| expressed protein [Oryza sativa Japonica Group]
gi|255674824|dbj|BAF12953.2| Os03g0708700 [Oryza sativa Japonica Group]
Length=957
Score = 36.2 bits (82), Expect = 5.3, Method: Composition-based stats.
Identities = 23/83 (28%), Positives = 41/83 (50%), Gaps = 0/83 (0%)
Query 141 AEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQLQMVTMAADPTRSAHATLVAL 200
+E+AP P+ ++ + LH + D + S S L+ +L V SAH +L L
Sbjct 552 SESAPDTPIHIEDIDGLHELPDHKAMTSDTKSVDLESIELVSVDQLKSALASAHKSLSTL 611
Query 201 QAGVGPEKSARILVGDSTVAIVD 223
+ E+SA + D T+A+++
Sbjct 612 YTELENERSAAAIAADETMAMIN 634
>gi|218193615|gb|EEC76042.1| hypothetical protein OsI_13222 [Oryza sativa Indica Group]
Length=963
Score = 36.2 bits (82), Expect = 5.8, Method: Composition-based stats.
Identities = 23/83 (28%), Positives = 41/83 (50%), Gaps = 0/83 (0%)
Query 141 AEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQLQMVTMAADPTRSAHATLVAL 200
+E+AP P+ ++ + LH + D + S S L+ +L V SAH +L L
Sbjct 558 SESAPDTPIHIEDIDGLHELPDHKAMTSDTKSVDLESIELVSVDQLKSALASAHKSLSTL 617
Query 201 QAGVGPEKSARILVGDSTVAIVD 223
+ E+SA + D T+A+++
Sbjct 618 YTELENERSAAAIAADETMAMIN 640
>gi|108797358|ref|YP_637555.1| putative DNA-binding protein [Mycobacterium sp. MCS]
gi|119866442|ref|YP_936394.1| putative DNA-binding protein [Mycobacterium sp. KMS]
gi|108767777|gb|ABG06499.1| putative DNA-binding protein [Mycobacterium sp. MCS]
gi|119692531|gb|ABL89604.1| putative DNA-binding protein [Mycobacterium sp. KMS]
Length=314
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 64/244 (27%), Positives = 97/244 (40%), Gaps = 24/244 (9%)
Query 37 AERALRHPVAAELMA----VGALDQAGNADPMVREWLTVLLRRDLGLLVTIGVPGGEPTR 92
++ A R P AE +A +G L G D V +W+ V+ R + L + G R
Sbjct 36 SQEADRAPFTAETVASLETLGVLSGDGVVDARVADWVRVVCRAEQWLDLRFVSGRGALLR 95
Query 93 AAICRFATWWVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLC-GVAEAAPLRPVTV 151
+ R A VV R +L+ A D A V LC G++ AP R
Sbjct 96 GVVARRADQTVVALRSRSLITF--TRMAIDHPHA------LVPVLCAGLSGRAPARFAEF 147
Query 152 DADELLHAVRDAGTLRSYLLSQRLDV----DQLQMVTMAADPTRSAHATLVALQAGVGPE 207
+ A D + L++ LD + V AA T + +VA G
Sbjct 148 TLPAAVGARADEQIRQGTPLAEVLDFLGIPPSARPVVEAAFDTSRTYVEIVA-----GEH 202
Query 208 KSARILVGDSTVAIVDTAAGRICVESVTSGQRRY-QVLSPGSRSDIGGAVQRLIRRLPAG 266
+ + V++VDT GR+ V V + + +PG+ I AV+RL LP+G
Sbjct 203 RDGHRVTTQVGVSVVDTTEGRVLVSPVRAFDGEWVSTFAPGTPFAIAAAVERLTGSLPSG 262
Query 267 DEWY 270
W+
Sbjct 263 -AWF 265
>gi|120401098|ref|YP_950927.1| hypothetical protein Mvan_0070 [Mycobacterium vanbaalenii PYR-1]
gi|119953916|gb|ABM10921.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=283
Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 71/288 (25%), Positives = 111/288 (39%), Gaps = 57/288 (19%)
Query 5 TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM 64
T+DG+ V+ + + LG+RP +P D + + V +L A G L G+ P
Sbjct 23 TIDGMLVIADLLHLVDFPLSLGIRPNIPYEDQ-RKIVWDQVTRDLTAQGILTAYGDPHPE 81
Query 65 VREWLTVL-----------LRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVR 113
V + L RRDLG G+ R +CR VV R +++
Sbjct 82 VAAMVDALSRPDRTLDCRWWRRDLG---------GKMVRFVVCRKGDRHVVAARDEDMLV 132
Query 114 LYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSY---L 170
L A +V+G A AA + P+T A +L A R A + +Y
Sbjct 133 LQRVAPQIGLAAMVGVVIGG-------APAADVEPLTGIATKLAEA-RTAEQIGAYGQPP 184
Query 171 LSQRL------DVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDT 224
LS ++ + D +T A H QAGVG ++D+
Sbjct 185 LSAKIYAEATANPDSWVEITAA-----ERHPGGTYSQAGVG-------------AGVLDS 226
Query 225 AAGRICVESVTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY 272
A GRI G Y PG++ ++ A+ L+ LP+ W+ +
Sbjct 227 AHGRIVSIPRQVGGELYGSFLPGTQENLQRALDGLVEFLPS-RAWFDH 273
>gi|240173074|ref|ZP_04751732.1| hypothetical protein MkanA1_27426 [Mycobacterium kansasii ATCC
12478]
gi|296165330|ref|ZP_06847872.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899346|gb|EFG78810.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=306
Score = 35.4 bits (80), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/66 (40%), Positives = 35/66 (54%), Gaps = 7/66 (10%)
Query 2 LTTTVDGLWVLQAVTGVEQTCPELGLRPL-LPRLDTAERALRHPVAAELMAVGALDQAGN 60
+T ++GLW+LQA+ G+ Q PEL RP PR + HP A L+ G D+
Sbjct 14 ITVNLEGLWLLQAMLGIPQLAPELRGRPYGQPR--NTDWLTAHPGLAVLVDQGIADE--- 68
Query 61 ADPMVR 66
D MVR
Sbjct 69 -DAMVR 73
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 435544382258
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40