BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3889c

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15611025|ref|NP_218406.1|  hypothetical protein Rv3889c [Mycob...   541    4e-152
gi|254233375|ref|ZP_04926701.1|  hypothetical protein TBCG_03816 ...   540    9e-152
gi|296167005|ref|ZP_06849418.1|  conserved hypothetical protein [...   440    1e-121
gi|254821255|ref|ZP_05226256.1|  hypothetical protein MintA_15057...   439    3e-121
gi|342860124|ref|ZP_08716776.1|  hypothetical protein MCOL_14635 ...   438    3e-121
gi|240168369|ref|ZP_04747028.1|  hypothetical protein MkanA1_0359...   433    1e-119
gi|41406260|ref|NP_959096.1|  hypothetical protein MAP0162 [Mycob...   416    3e-114
gi|289572148|ref|ZP_06452375.1|  hypothetical protein TBJG_04026 ...   339    3e-91 
gi|333988692|ref|YP_004521306.1|  hypothetical protein JDM601_005...   332    5e-89 
gi|333989614|ref|YP_004522228.1|  hypothetical protein JDM601_097...   244    7e-63 
gi|31795062|ref|NP_857555.1|  hypothetical protein Mb3918c [Mycob...   137    1e-30 
gi|119855162|ref|YP_935767.1|  hypothetical protein Mkms_5777 [My...  65.1    1e-08 
gi|296164028|ref|ZP_06846651.1|  conserved protein [Mycobacterium...  58.5    1e-06 
gi|54022788|ref|YP_117030.1|  hypothetical protein nfa8210 [Nocar...  51.2    2e-04 
gi|296165450|ref|ZP_06847986.1|  conserved hypothetical protein [...  49.3    7e-04 
gi|118470815|ref|YP_885033.1|  DNA-binding protein [Mycobacterium...  46.2    0.006 
gi|15827810|ref|NP_302073.1|  hypothetical protein ML1540 [Mycoba...  44.7    0.014 
gi|336457558|gb|EGO36563.1|  hypothetical protein MAPs_21140 [Myc...  43.5    0.032 
gi|183985412|ref|YP_001853703.1|  hypothetical protein MMAR_5441 ...  43.1    0.040 
gi|308232596|ref|ZP_07416567.2|  hypothetical protein TMAG_00613 ...  42.4    0.069 
gi|294995553|ref|ZP_06801244.1|  hypothetical protein Mtub2_13837...  42.4    0.069 
gi|240168345|ref|ZP_04747004.1|  hypothetical protein MkanA1_0347...  42.4    0.072 
gi|340628838|ref|YP_004747290.1|  hypothetical protein MCAN_38881...  42.4    0.082 
gi|15608931|ref|NP_216310.1|  hypothetical protein Rv1794 [Mycoba...  42.4    0.083 
gi|15611002|ref|NP_218383.1|  hypothetical protein Rv3866 [Mycoba...  42.4    0.085 
gi|342861302|ref|ZP_08717950.1|  hypothetical protein MCOL_20561 ...  41.6    0.14  
gi|298527340|ref|ZP_07014749.1|  conserved hypothetical protein [...  40.8    0.20  
gi|254820295|ref|ZP_05225296.1|  hypothetical protein MintA_10221...  40.4    0.26  
gi|118472873|ref|YP_884475.1|  hypothetical protein MSMEG_0057 [M...  40.4    0.29  
gi|240170253|ref|ZP_04748912.1|  hypothetical protein MkanA1_1314...  40.0    0.36  
gi|296164782|ref|ZP_06847343.1|  conserved hypothetical protein [...  40.0    0.38  
gi|41407607|ref|NP_960443.1|  hypothetical protein MAP1509 [Mycob...  40.0    0.40  
gi|183982683|ref|YP_001850974.1|  hypothetical protein MMAR_2676 ...  39.7    0.48  
gi|169629313|ref|YP_001702962.1|  hypothetical protein MAB_2227c ...  39.3    0.66  
gi|118618464|ref|YP_906796.1|  hypothetical protein MUL_3081 [Myc...  39.3    0.68  
gi|169245927|gb|ACA50948.1|  conserved protein [Mycobacterium mar...  38.9    0.77  
gi|296138069|ref|YP_003645312.1|  hypothetical protein Tpau_0330 ...  38.5    1.1   
gi|240172854|ref|ZP_04751513.1|  hypothetical protein MkanA1_2631...  38.5    1.2   
gi|297160610|gb|ADI10322.1|  hypothetical protein SBI_07202 [Stre...  37.0    3.4   
gi|108797043|ref|YP_637240.1|  hypothetical protein Mmcs_0062 [My...  37.0    3.4   
gi|126432665|ref|YP_001068356.1|  hypothetical protein Mjls_0052 ...  37.0    3.6   
gi|291302865|ref|YP_003514143.1|  lanthionine synthetase C family...  36.6    4.6   
gi|222625651|gb|EEE59783.1|  hypothetical protein OsJ_12294 [Oryz...  36.2    5.2   
gi|297601549|ref|NP_001051039.2|  Os03g0708700 [Oryza sativa Japo...  36.2    5.3   
gi|218193615|gb|EEC76042.1|  hypothetical protein OsI_13222 [Oryz...  36.2    5.8   
gi|108797358|ref|YP_637555.1|  putative DNA-binding protein [Myco...  35.8    6.5   
gi|120401098|ref|YP_950927.1|  hypothetical protein Mvan_0070 [My...  35.8    7.2   
gi|240173074|ref|ZP_04751732.1|  hypothetical protein MkanA1_2742...  35.4    9.4   


>gi|15611025|ref|NP_218406.1| hypothetical protein Rv3889c [Mycobacterium tuberculosis H37Rv]
 gi|15843520|ref|NP_338557.1| hypothetical protein MT4004 [Mycobacterium tuberculosis CDC1551]
 gi|121639800|ref|YP_980024.1| hypothetical protein BCG_3945c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 73 more sequence titles
 Length=276

 Score =  541 bits (1394),  Expect = 4e-152, Method: Compositional matrix adjust.
 Identities = 276/276 (100%), Positives = 276/276 (100%), Gaps = 0/276 (0%)

Query  1    MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN  60
            MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN
Sbjct  1    MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN  60

Query  61   ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA  120
            ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA
Sbjct  61   ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA  120

Query  121  SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL  180
            SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL
Sbjct  121  SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL  180

Query  181  QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR  240
            QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR
Sbjct  181  QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR  240

Query  241  YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV  276
            YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV
Sbjct  241  YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV  276


>gi|254233375|ref|ZP_04926701.1| hypothetical protein TBCG_03816 [Mycobacterium tuberculosis C]
 gi|124603168|gb|EAY61443.1| hypothetical protein TBCG_03816 [Mycobacterium tuberculosis C]
Length=276

 Score =  540 bits (1391),  Expect = 9e-152, Method: Compositional matrix adjust.
 Identities = 275/276 (99%), Positives = 276/276 (100%), Gaps = 0/276 (0%)

Query  1    MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN  60
            MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN
Sbjct  1    MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN  60

Query  61   ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA  120
            ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGN+VRLYPAGTA
Sbjct  61   ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNVVRLYPAGTA  120

Query  121  SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL  180
            SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL
Sbjct  121  SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL  180

Query  181  QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR  240
            QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR
Sbjct  181  QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR  240

Query  241  YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV  276
            YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV
Sbjct  241  YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV  276


>gi|296167005|ref|ZP_06849418.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897635|gb|EFG77228.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=276

 Score =  440 bits (1131),  Expect = 1e-121, Method: Compositional matrix adjust.
 Identities = 226/276 (82%), Positives = 254/276 (93%), Gaps = 0/276 (0%)

Query  1    MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN  60
            MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDT ERALRHPV AEL A GALD+AGN
Sbjct  1    MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTPERALRHPVVAELKAAGALDEAGN  60

Query  61   ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA  120
             DPM+REWLTVLLRRDLGLLVTI VPG E TRAAICRFA+WWVVLERHG+L+RLYPAGTA
Sbjct  61   VDPMIREWLTVLLRRDLGLLVTITVPGREATRAAICRFASWWVVLERHGDLIRLYPAGTA  120

Query  121  SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL  180
            S+E+GA +LVVGQVERLCGVAE APL+PVT+D ++LL +VRDA +LR++LLSQ LDVDQL
Sbjct  121  SNESGASDLVVGQVERLCGVAEVAPLKPVTLDTEQLLASVRDAASLRTFLLSQNLDVDQL  180

Query  181  QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR  240
            Q+V+MAADP RSAHA +V LQAGVGP++ ARI VGDSTV+I+DT AGR+CVE+V SGQRR
Sbjct  181  QIVSMAADPARSAHAAIVGLQAGVGPDEMARIAVGDSTVSIIDTPAGRVCVENVISGQRR  240

Query  241  YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV  276
            YQ+LSPGSRSDI GAVQRLIRRLPAG++WYSYRRVV
Sbjct  241  YQILSPGSRSDISGAVQRLIRRLPAGEDWYSYRRVV  276


>gi|254821255|ref|ZP_05226256.1| hypothetical protein MintA_15057 [Mycobacterium intracellulare 
ATCC 13950]
Length=276

 Score =  439 bits (1128),  Expect = 3e-121, Method: Compositional matrix adjust.
 Identities = 218/276 (79%), Positives = 251/276 (91%), Gaps = 0/276 (0%)

Query  1    MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN  60
            MLTTTVDGLWVLQA+TGVEQTCPELGLRP+LPRLDT ERAL HP AA+L+A GALD+AGN
Sbjct  1    MLTTTVDGLWVLQAITGVEQTCPELGLRPMLPRLDTPERALGHPAAADLIAAGALDEAGN  60

Query  61   ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA  120
             DPM+REWLTVLLRRDLGL+V +GVPG EPTRA+I RFATWWVVLERHG +VRLYPAGTA
Sbjct  61   VDPMIREWLTVLLRRDLGLVVMMGVPGREPTRASINRFATWWVVLERHGEMVRLYPAGTA  120

Query  121  SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL  180
            S+E+ A ELVVGQ+ERLCGVAEAAPLRP+T+D ++LL++VRD  +LR++LL QRLD DQL
Sbjct  121  SNESSASELVVGQIERLCGVAEAAPLRPITLDTEQLLNSVRDTASLRAFLLEQRLDADQL  180

Query  181  QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR  240
            Q+V  AADP RSAHA +VALQAGVGP++ AR+ VGD+TV+IVDT  GR+C+ESV SGQRR
Sbjct  181  QVVLTAADPARSAHANIVALQAGVGPDELARVAVGDATVSIVDTPGGRVCIESVISGQRR  240

Query  241  YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV  276
            YQ+LSPGSRSDIGGAVQRLIRRLPAGDEW+SYRRVV
Sbjct  241  YQILSPGSRSDIGGAVQRLIRRLPAGDEWHSYRRVV  276


>gi|342860124|ref|ZP_08716776.1| hypothetical protein MCOL_14635 [Mycobacterium colombiense CECT 
3035]
 gi|342132502|gb|EGT85731.1| hypothetical protein MCOL_14635 [Mycobacterium colombiense CECT 
3035]
Length=276

 Score =  438 bits (1127),  Expect = 3e-121, Method: Compositional matrix adjust.
 Identities = 218/276 (79%), Positives = 250/276 (91%), Gaps = 0/276 (0%)

Query  1    MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN  60
            MLTTTVDGLWVLQA+TGVEQTCPELGLRP+LPRLDT ERA  HP AAEL+A GALD+AGN
Sbjct  1    MLTTTVDGLWVLQALTGVEQTCPELGLRPMLPRLDTPERAKGHPAAAELVAAGALDEAGN  60

Query  61   ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA  120
             DPM+REWLTVLLRRD+ LL  IGVPG EPTRA+ICRFATWWVVLERHG++VRLYPAGTA
Sbjct  61   VDPMIREWLTVLLRRDIALLAMIGVPGREPTRASICRFATWWVVLERHGDMVRLYPAGTA  120

Query  121  SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL  180
             +EA A +L+VGQ+ERLCGVAEAAPL+PVT+D ++LL++VRD  +LRS+LL QRLD DQL
Sbjct  121  GNEASASDLLVGQIERLCGVAEAAPLKPVTLDTEQLLNSVRDTASLRSFLLEQRLDADQL  180

Query  181  QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR  240
            QMV  AADP RSAHA +V LQAGVGP++ ARI VG+STV+IVDT AGRIC+ESVTSGQR+
Sbjct  181  QMVLTAADPARSAHANIVGLQAGVGPDEQARIAVGESTVSIVDTPAGRICIESVTSGQRQ  240

Query  241  YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV  276
            YQ+LSPGSR+DIGGA+QRLIRRLPAGDEW+SYRRVV
Sbjct  241  YQILSPGSRTDIGGAIQRLIRRLPAGDEWHSYRRVV  276


>gi|240168369|ref|ZP_04747028.1| hypothetical protein MkanA1_03592 [Mycobacterium kansasii ATCC 
12478]
Length=276

 Score =  433 bits (1114),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 234/276 (85%), Positives = 256/276 (93%), Gaps = 0/276 (0%)

Query  1    MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN  60
            MLTTTVDGLWVLQAVTGVEQ CPELGLRPLLPRLDTAERAL+HPVAA+L A GALD++GN
Sbjct  1    MLTTTVDGLWVLQAVTGVEQICPELGLRPLLPRLDTAERALQHPVAADLKAAGALDESGN  60

Query  61   ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA  120
            ADPM+REWLTVLLRRDLGLL+ I VPGGEPTRAAICRFATWWVVLERHG LVRLYPAG A
Sbjct  61   ADPMIREWLTVLLRRDLGLLLLINVPGGEPTRAAICRFATWWVVLERHGELVRLYPAGMA  120

Query  121  SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL  180
            S+E  AGELVVGQ+E+LCGVAEAAPLRPVTVDA+ LL +VRD G+LRS+L+SQRLDVDQL
Sbjct  121  SNETVAGELVVGQIEQLCGVAEAAPLRPVTVDAEALLESVRDPGSLRSFLVSQRLDVDQL  180

Query  181  QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR  240
            QM+TMAADP RSAHA +V LQAG+GPEK+AR+L+GD+ V I+DT AGRICVESV SGQRR
Sbjct  181  QMLTMAADPARSAHAAIVGLQAGIGPEKTARLLIGDTAVTIIDTQAGRICVESVMSGQRR  240

Query  241  YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV  276
            YQVLSPGSR DIGGAVQRLIRRLPAGDEWYSYRRVV
Sbjct  241  YQVLSPGSRGDIGGAVQRLIRRLPAGDEWYSYRRVV  276


>gi|41406260|ref|NP_959096.1| hypothetical protein MAP0162 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118466894|ref|YP_879449.1| hypothetical protein MAV_0155 [Mycobacterium avium 104]
 gi|254773211|ref|ZP_05214727.1| hypothetical protein MaviaA2_00816 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41394608|gb|AAS02479.1| hypothetical protein MAP_0162 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118168181|gb|ABK69078.1| conserved hypothetical protein [Mycobacterium avium 104]
 gi|336457495|gb|EGO36502.1| hypothetical protein MAPs_22310 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=276

 Score =  416 bits (1068),  Expect = 3e-114, Method: Compositional matrix adjust.
 Identities = 221/276 (81%), Positives = 246/276 (90%), Gaps = 0/276 (0%)

Query  1    MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN  60
            MLTTTVDGLWVLQAVTG+EQTCPELGLRPLLPRLDT ERALRHP AAEL+A GALD+AGN
Sbjct  1    MLTTTVDGLWVLQAVTGIEQTCPELGLRPLLPRLDTPERALRHPAAAELVAAGALDEAGN  60

Query  61   ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA  120
             DPM+REWLTVLLRRDLGLLV I VPG EP+RA+ICRFATWWVVLERH  LVRLYPAGTA
Sbjct  61   VDPMIREWLTVLLRRDLGLLVMIAVPGREPSRASICRFATWWVVLERHDQLVRLYPAGTA  120

Query  121  SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL  180
            S EA A E+VVGQ+ERLCGVAEAAPLRP+T+D ++LL +V D  +LR++LL QRLD DQL
Sbjct  121  SSEAAASEIVVGQIERLCGVAEAAPLRPITLDTEQLLASVHDTASLRAFLLEQRLDADQL  180

Query  181  QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR  240
            Q V  AAD  RSAHA +VALQAGVGP++ AR+ VGDS+V+IVDT  GR+C+ESV SGQRR
Sbjct  181  QTVLTAADSARSAHANIVALQAGVGPDELARVAVGDSSVSIVDTPGGRVCIESVVSGQRR  240

Query  241  YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV  276
            YQ+LSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV
Sbjct  241  YQILSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV  276


>gi|289572148|ref|ZP_06452375.1| hypothetical protein TBJG_04026 [Mycobacterium tuberculosis T17]
 gi|289545903|gb|EFD49550.1| hypothetical protein TBJG_04026 [Mycobacterium tuberculosis T17]
Length=174

 Score =  339 bits (869),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 173/174 (99%), Positives = 174/174 (100%), Gaps = 0/174 (0%)

Query  103  VVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRD  162
            +VLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRD
Sbjct  1    MVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRD  60

Query  163  AGTLRSYLLSQRLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIV  222
            AGTLRSYLLSQRLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIV
Sbjct  61   AGTLRSYLLSQRLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIV  120

Query  223  DTAAGRICVESVTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV  276
            DTAAGRICVESVTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV
Sbjct  121  DTAAGRICVESVTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV  174


>gi|333988692|ref|YP_004521306.1| hypothetical protein JDM601_0052 [Mycobacterium sp. JDM601]
 gi|333484660|gb|AEF34052.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=282

 Score =  332 bits (850),  Expect = 5e-89, Method: Compositional matrix adjust.
 Identities = 181/282 (65%), Positives = 227/282 (81%), Gaps = 6/282 (2%)

Query  1    MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN  60
            MLTTT+DGLWVLQAVTG+E  CPELGLRPLLPRLDTA+RA++HP+A EL  +GALD  G 
Sbjct  1    MLTTTLDGLWVLQAVTGIETLCPELGLRPLLPRLDTADRAVQHPIAEELTEIGALDGQGE  60

Query  61   ADPMVREWLTVLLRRDLGLLVTIGVPG---GEP---TRAAICRFATWWVVLERHGNLVRL  114
            ADPM+REWLTV++RRD+ LL+ +  PG   G+P   TR +I RFA+WWVVLERH   +RL
Sbjct  61   ADPMIREWLTVIMRRDVALLLQLNFPGRPYGDPQHMTRVSINRFASWWVVLERHDQEIRL  120

Query  115  YPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQR  174
            YPAGTA+D+A A +LVVGQ+ERLCGV EAAPLRPVT+D  ELL  VRD   LR+YL +QR
Sbjct  121  YPAGTATDQAAAADLVVGQIERLCGVTEAAPLRPVTLDTKELLEQVRDRDGLRNYLAAQR  180

Query  175  LDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESV  234
            LD+DQ Q + MA+DP  S  A +VALQ G GP++ AR+ +GD++V I DT AGR+CVE++
Sbjct  181  LDIDQQQTLLMASDPEVSGQANIVALQPGAGPDELARMAIGDTSVLISDTPAGRVCVENI  240

Query  235  TSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV  276
             +G RRYQ++SPGSR+D+  A+ RLIRRLPAG +W+S+RRVV
Sbjct  241  DNGGRRYQIVSPGSRADVANAILRLIRRLPAGADWHSHRRVV  282


>gi|333989614|ref|YP_004522228.1| hypothetical protein JDM601_0974 [Mycobacterium sp. JDM601]
 gi|333485582|gb|AEF34974.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=276

 Score =  244 bits (624),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 131/276 (48%), Positives = 174/276 (64%), Gaps = 0/276 (0%)

Query  1    MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN  60
            MLTTT+DGLWVLQ + GVE   PELGLRP++PR++T + AL HPVA EL   G +D AG 
Sbjct  1    MLTTTIDGLWVLQVLAGVEVVAPELGLRPVMPRVETPQLALAHPVALELREHGVIDAAGA  60

Query  61   ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA  120
             D  V EWLTVL RRD+ LL+ +  P     +A + RFA WWVV ER G+ VR+  AGT+
Sbjct  61   VDRTVVEWLTVLARRDIALLLRVQDPRRVEAQAVLARFAQWWVVAERCGDGVRIGGAGTS  120

Query  121  SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQL  180
              E  AG ++  Q+ERLCGV      RPV V+   LL A     ++++YL SQ    +QL
Sbjct  121  VSEGEAGAVLQAQIERLCGVVPPVQFRPVDVETTALLAAAGSPESVQNYLTSQPFSAEQL  180

Query  181  QMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRR  240
            Q++  A DPTRS   ++ ALQAGV   +  R  +    V+I+D  AGR+ VE   S  R+
Sbjct  181  QILLAATDPTRSTQTSIAALQAGVETGRPTRTHIHPGAVSIIDIPAGRVVVEHSVSAGRQ  240

Query  241  YQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRVV  276
              ++ PG+ S+I  AV +++RRLPA  EW+S RR V
Sbjct  241  QMLVVPGTASNIAAAVNKMLRRLPAHHEWHSSRRQV  276


>gi|31795062|ref|NP_857555.1| hypothetical protein Mb3918c [Mycobacterium bovis AF2122/97]
 gi|31620660|emb|CAD96104.1| HYPOTHETICAL PROTEIN Mb3918c [Mycobacterium bovis AF2122/97]
Length=72

 Score =  137 bits (346),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 68/68 (100%), Positives = 68/68 (100%), Gaps = 0/68 (0%)

Query  1   MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN  60
           MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN
Sbjct  1   MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN  60

Query  61  ADPMVREW  68
           ADPMVREW
Sbjct  61  ADPMVREW  68


>gi|119855162|ref|YP_935767.1| hypothetical protein Mkms_5777 [Mycobacterium sp. KMS]
 gi|119697880|gb|ABL94952.1| hypothetical protein Mkms_5777 [Mycobacterium sp. KMS]
Length=288

 Score = 65.1 bits (157),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 84/284 (30%), Positives = 124/284 (44%), Gaps = 38/284 (13%)

Query  2    LTTTVDGLWVLQAVTGVEQTCPELGLRPLLP----RLDTAERALRHPVAA-----ELMAV  52
            LTTTV G+WVLQA+ GVE     L L+P +P     L     A   P+A       L+  
Sbjct  3    LTTTVGGVWVLQALLGVESMPTALRLKPFIPSVHHELIVETTAGPVPIAETAEYLSLVQA  62

Query  53   GALDQAGNADPMVREWLTVLLRRDLGLLVTIGVPGGE-------PT----RAAICRFATW  101
            GA+  +G  D  VR+W+TVL R D   ++TI  P G+       PT       +CR+  W
Sbjct  63   GAISPSGAVDDPVRDWMTVLGRPDRQAVLTIRRPSGQAVHNGELPTVEERVVVVCRYRRW  122

Query  102  WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADEL---LH  158
              +  R GN + +   G   D A   +L+   +    GVA  A +  V + AD +   L 
Sbjct  123  LAMAARDGNEMVVDAVGETDDPAVQADLMCQTLMPALGVAAPADIDGVNIPADLMQSTLE  182

Query  159  AVRDAGTLRSYLLSQRLDVDQLQMVTMAADPTR---SAHATLVALQAGVGPEKSARILVG  215
            A    G   +     RL +   Q   +AA  TR   SA A  + +   +      R+   
Sbjct  183  AAVPQGRDATIAAMSRLGLQPQQAEVLAA-ATRLDDSAMAVAMVIDHDIAQHVHPRV---  238

Query  216  DSTVAIVDTAAGRICVESVTSGQ-RRYQVLSPGS----RSDIGG  254
               V + DT  GR+ + + TS   +++  L P +    R D+ G
Sbjct  239  ---VTVADTEFGRVSITTSTSADGKQWLSLWPATTDAVREDLHG  279


>gi|296164028|ref|ZP_06846651.1| conserved protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900576|gb|EFG79959.1| conserved protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=313

 Score = 58.5 bits (140),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 88/313 (29%), Positives = 131/313 (42%), Gaps = 52/313 (16%)

Query  2    LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA  61
            L+TT +GLW+  A+ GV Q  P L +RP+     T      HP   E++    + Q G  
Sbjct  12   LSTTSEGLWLTAALCGVAQLPPALKIRPIGAVQATIA---AHP-GMEVLENAGICQGGEV  67

Query  62   DPMVREWLTVLLRRDLGLLVTIGVPGGEPTR---------------AAICRFATWW----  102
            DP V  W+  L R D+ + VTI  P   P R                A    A W+    
Sbjct  68   DPSVASWVRALGRPDVEIDVTITRPEIRPERLEGPPAVFTAPEDAIEAAEALARWYAQRP  127

Query  103  ----VVLERHGN----LVRLY-PAGTASDEA-----GAGELVVGQVERLCGVAEAAPLRP  148
                V L R  N      RL+ P    SDE      G  E+    V+ + G A+ A    
Sbjct  128  PQRVVTLCRRDNAWVAAARLWRPGQDTSDEVVVTPLGGTEIAHVVVDTI-GPADPAQFHG  186

Query  149  VTVDA---DELLHA--VRDAGTLRSYLLSQRLDVDQLQMVTMAADPTRSAHATLVALQAG  203
            +  +A   + +L A     A  + + L+   L V Q ++V   AD   +  A + A +  
Sbjct  187  INSEAAVLNTVLSAWQANPAIDIIAGLVEVGLSVPQARLVEAVAD-RGTTRAVIGAAEFS  245

Query  204  V-GPEKSARILVGDSTVAIVDTAAGRICV-ESVTSGQRRYQVLSPGSRSDIGGAVQRLIR  261
            + GP ++         V + DT  GR+ V  SV    R++  L PG+   I  AV  L+ 
Sbjct  246  ISGPARAPM------AVTVADTLIGRVVVSNSVGPDGRQWTTLLPGADHAIHTAVVELLE  299

Query  262  RLPAGDEWYSYRR  274
             LP+G  W +++R
Sbjct  300  TLPSGRGWATHQR  312


>gi|54022788|ref|YP_117030.1| hypothetical protein nfa8210 [Nocardia farcinica IFM 10152]
 gi|54014296|dbj|BAD55666.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=264

 Score = 51.2 bits (121),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 74/271 (28%), Positives = 116/271 (43%), Gaps = 17/271 (6%)

Query  1    MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGN  60
            M T T DG+  L    G++     LG+ P     D    A R  VA +L   G +D  G 
Sbjct  1    MTTLTNDGVLALAERLGIQTMPLVLGIGPRQQTYDAWTAAQRRAVA-DLTGAGLIDGYGE  59

Query  61   ADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTA  120
             DP + + + VL + D  L+  +    G PTR  +        +  R G+ +R+ PA   
Sbjct  60   VDPELADAMYVLAQPDRELVARVYPGDGAPTRLCLALRGERHALALRRGDDIRIEPAW--  117

Query  121  SDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADEL---LHAVRDAGTLRSYLLSQRLDV  177
            SDE+G+   +V  + R  G AE A + P +  A EL   L A R +      + +  +  
Sbjct  118  SDESGS--ALVAALLRALGPAEPADVAPFSAPAAELAERLSAARTSADFTDAVYALGVAE  175

Query  178  DQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIV-DTAAGRICV-ESVT  235
                   +A +  R A+A +VA     G      +       A+V +T  GRI V   + 
Sbjct  176  RDAPRYGLAFESCR-AYAEIVAYAHVDG------VTTRPPCAAVVYETGRGRIVVAPGIA  228

Query  236  SGQRRYQVLSPGSRSDIGGAVQRLIRRLPAG  266
              Q+ +  ++PG+   +  A+  LI  LP G
Sbjct  229  PDQQVWSTVTPGTDHRVAQAISGLIETLPGG  259


>gi|296165450|ref|ZP_06847986.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899190|gb|EFG78660.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=286

 Score = 49.3 bits (116),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 61/258 (24%), Positives = 107/258 (42%), Gaps = 29/258 (11%)

Query  1    MLTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDT----AERALRHPVAA-----ELMA  51
            +L  +V+ +WVLQA+ GVE     L L+P +P   +       A + P+        L+ 
Sbjct  3    VLNASVECVWVLQALLGVESMPISLRLKPYIPAAHSDFIVETDAGKVPLTGTAQYQSLVQ  62

Query  52   VGALDQAGNADPMVREWLTVLLRRDLGLLVTIGVPGGEPTRAA----------ICRFATW  101
             G +D  G  D  VR+W+TVL R +  +++TI  P    T  +          +CR+  +
Sbjct  63   AGVIDANGRVDDAVRDWMTVLGRAEREVVLTIRRPDQPATHDSGATVHERVMVVCRYGRY  122

Query  102  WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR  161
              +  R G  + +   G   +     EL+   +    G    A +  + V  D +  A+ 
Sbjct  123  LAMAARDGEEMVIGGVGETDEPTRQVELMCQMLVPAFGDHPPADIEGINVPKDMMQMAID  182

Query  162  DAGTLRSYLLS--QRLDVD--QLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDS  217
             AG     +    +RL +   ++++V  AA   +SA A +  +          R+L    
Sbjct  183  AAGHTPEGMAGALRRLGLGPWEVEVVQAAATLDQSAMAVVAVIDHCPDVRPHPRVLT---  239

Query  218  TVAIVDTAAGRICVESVT  235
               + DT  GR+   + T
Sbjct  240  ---VADTEYGRLSFTTTT  254


>gi|118470815|ref|YP_885033.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
 gi|118172102|gb|ABK72998.1| putative DNA-binding protein [Mycobacterium smegmatis str. MC2 
155]
Length=293

 Score = 46.2 bits (108),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 70/270 (26%), Positives = 102/270 (38%), Gaps = 17/270 (6%)

Query  5    TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAER-ALRHPVAAELMAVGALDQAGNADP  63
            T D  W L  V G       L + P  P  D ++R A     +AEL  +G ++ AG  DP
Sbjct  9    TTDQAWCLADVLGAGSYPWVLAITP--PYSDHSQRSAFLAAQSAELTRMGVVNSAGAVDP  66

Query  64   MVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTASDE  123
             V +W+T + R    L +      G+  R  + R +   VV  R+  LV      TA D 
Sbjct  67   RVAQWITTVCRATQWLDLRFVSGPGDLLRGMVARRSEETVVALRNAQLVTF----TAMDI  122

Query  124  AGAGELVVGQVERLCG--VAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQLQ  181
                 LV      L G   A                  +R+   L   L    +      
Sbjct  123  GHQHALVPVLTAGLSGRKPARFDDFALPAAAGARADEQIRNGAPLAEVLEFLGVPPSARP  182

Query  182  MVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRRY  241
            +V    D  R  +  +VA     G  +    +  +  V+I+DT  GRI V    +    +
Sbjct  183  LVESVFD-GRRTYVEIVA-----GEHRDGHRVTTEVGVSIIDTPHGRILVHPTKAFDGEW  236

Query  242  -QVLSPGSRSDIGGAVQRLIRRLPAGDEWY  270
                +PGS   I  AV+RL   LP+G  W+
Sbjct  237  ISTFTPGSADAIAMAVERLTASLPSG-SWF  265


>gi|15827810|ref|NP_302073.1| hypothetical protein ML1540 [Mycobacterium leprae TN]
 gi|221230287|ref|YP_002503703.1| hypothetical protein MLBr_01540 [Mycobacterium leprae Br4923]
 gi|4455687|emb|CAB36587.1| hypothetical protein MLCB596.31 [Mycobacterium leprae]
 gi|13093362|emb|CAC30491.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933394|emb|CAR71635.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=300

 Score = 44.7 bits (104),  Expect = 0.014, Method: Compositional matrix adjust.
 Identities = 73/307 (24%), Positives = 129/307 (43%), Gaps = 49/307 (15%)

Query  2    LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA  61
            +T  VDG W+LQA+  +    PEL  RP +   D+ +    HP  A +   G +   GN 
Sbjct  10   ITVNVDGFWLLQALLDIRHVAPELRCRPFV-STDSNDWLHEHPGMAVMREQGIVVN-GNV  67

Query  62   DPMVREWLTVLLRRDLGLLVTIG--------------------VPGGEPTRAAICRFATW  101
            +  V   + V    DL ++  +                     +P  E  R  + R  + 
Sbjct  68   NEHVATRMRVFAAPDLEVVALLSRGKLLYGAVNDENQPPGSRDIPENE-FRVVLVRRGSH  126

Query  102  WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR  161
            W    R GN + +     A D A    LV+  +E +   A+ A +  V V  +E+L A +
Sbjct  127  WASAVRVGNDITIDDVAIA-DSASITSLVMDGLESIHH-ADPAAINAVNVPLEEMLEATK  184

Query  162  ---DAG-TLRSYLLSQRLDVDQLQMVTMA---ADPTRSAHATLVALQA---GVGPEKSAR  211
               DAG  + S    +R+ +    +  +    +DP  +A A + A Q      GP     
Sbjct  185  SWQDAGFNVFSGRDLRRMGISAATVAALGQALSDP--AAEAAVYARQYRDDAKGPSA---  239

Query  212  ILVGDSTVAIVDTAAGRICV--ESVTSG-QRRYQVLSPGSRSDIGGAVQRLIRRLPAGDE  268
                 S +++ D+++GRI +  ++ T+G    +  + P +   +   ++ ++  LP GD 
Sbjct  240  -----SVLSLKDSSSGRIAIYQQARTAGLGDAWLAICPATPQLVQLGLKTVLDTLPYGD-  293

Query  269  WYSYRRV  275
            W ++ RV
Sbjct  294  WKTHSRV  300


>gi|336457558|gb|EGO36563.1| hypothetical protein MAPs_21140 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=300

 Score = 43.5 bits (101),  Expect = 0.032, Method: Compositional matrix adjust.
 Identities = 46/180 (26%), Positives = 72/180 (40%), Gaps = 25/180 (13%)

Query  2    LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA  61
            +T  VDG W+LQA+  +    PEL  RP +   D+ +R   HP  A +   G + +    
Sbjct  10   ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSNDRLNDHPGMAVMREQGIV-EGDQV  67

Query  62   DPMVREWLTVLLRRDLGLLVTIG--------------------VPGGEPTRAAICRFATW  101
            +  V   + VL   DL ++  +                     +P  E  R  + R    
Sbjct  68   NEQVAARMRVLAAPDLEVIALLSRGKLAYGVIDDQNQPPGSRDIPDNE-FRVVLARRGQH  126

Query  102  WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR  161
            WV   R G  + +     A D A    LV+  +E +   AE A +  V V  +E+L A +
Sbjct  127  WVSAVRVGGEITVDDVAVA-DSASIASLVIDALESIHH-AEPAAINAVNVPLEEMLEATK  184


>gi|183985412|ref|YP_001853703.1| hypothetical protein MMAR_5441 [Mycobacterium marinum M]
 gi|183178738|gb|ACC43848.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=279

 Score = 43.1 bits (100),  Expect = 0.040, Method: Compositional matrix adjust.
 Identities = 69/264 (27%), Positives = 109/264 (42%), Gaps = 20/264 (7%)

Query  5    TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM  64
            T+DG+ V+     +      LG+RP +P+ D  E  +   VA +L A G LD  G   P 
Sbjct  22   TIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRE-IVWDQVARDLTAQGVLDHNGQPHPA  80

Query  65   VREWLTVLLRRDLGLLVTIGVP--GGEPTRAAICRFATWWVVLERHGNLVRLYPAGTASD  122
            V   +  L R D  L         GG   R  +CR     V+  R G+++ L      + 
Sbjct  81   VAAMVDTLSRADRTLEGRWWRRDVGGVMVRFVVCRKGERHVIAVRDGDMLVLQ---LVAP  137

Query  123  EAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQLQM  182
              G    + G V  + G AE A + P+T  A EL     +A  L  Y L+        ++
Sbjct  138  RVG----LAGMVTAVLGTAEPANVEPLTGIASELGECT-NAAQLTRYGLTPTTARLYTEI  192

Query  183  VTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRRYQ  242
            VT   +P   +   +VA +   G   +       +   ++D+A GR+       G   Y 
Sbjct  193  VT---NP--KSWVEIVASERHPGGTTTHT----KAAAGVLDSAHGRLVSLPRQVGGELYG  243

Query  243  VLSPGSRSDIGGAVQRLIRRLPAG  266
               PG+  ++  A+  L+  LP+G
Sbjct  244  SFLPGTEQNLQRALDSLLELLPSG  267


>gi|308232596|ref|ZP_07416567.2| hypothetical protein TMAG_00613 [Mycobacterium tuberculosis SUMu001]
 gi|308369263|ref|ZP_07417096.2| hypothetical protein TMBG_02406 [Mycobacterium tuberculosis SUMu002]
 gi|308371485|ref|ZP_07425109.2| hypothetical protein TMCG_01376 [Mycobacterium tuberculosis SUMu003]
 21 more sequence titles
 Length=285

 Score = 42.4 bits (98),  Expect = 0.069, Method: Compositional matrix adjust.
 Identities = 69/279 (25%), Positives = 109/279 (40%), Gaps = 39/279 (13%)

Query  5    TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM  64
            T+DG+ V+     +      LG+RP +P+ D  +      V  +L A G LD  G   P 
Sbjct  24   TIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ-VQRDLTAQGVLDLHGEPQPT  82

Query  65   VREWLTVL-----------LRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVR  113
            V E +  L            RRD+G         G   R  +CR     V+  R G+++ 
Sbjct  83   VAEMVETLGRPDRTLEGRWWRRDIG---------GVMVRFVVCRRGDRHVIAARDGDMLV  133

Query  114  LYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQ  173
            L      + + G    + G V  + G AE A + P+T  A EL      A  L  Y ++ 
Sbjct  134  LQ---LVAPQVG----LAGMVTAVLGPAEPANVEPLTGVATELAECTT-ASQLTQYGIAP  185

Query  174  RLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVES  233
                       +  +PT      +VA Q   G   +      D+   ++D+  GR+    
Sbjct  186  ---ASARVYAEIVGNPT--GWVEIVASQRHPGGTTTQT----DAAAGVLDSKLGRLVSLP  236

Query  234  VTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY  272
               G   Y    PG++ ++  A+  L+  LPAG  W  +
Sbjct  237  RRVGGDLYGSFLPGTQQNLERALDGLLELLPAG-AWLDH  274


>gi|294995553|ref|ZP_06801244.1| hypothetical protein Mtub2_13837 [Mycobacterium tuberculosis 
210]
Length=268

 Score = 42.4 bits (98),  Expect = 0.069, Method: Compositional matrix adjust.
 Identities = 69/279 (25%), Positives = 109/279 (40%), Gaps = 39/279 (13%)

Query  5    TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM  64
            T+DG+ V+     +      LG+RP +P+ D  +      V  +L A G LD  G   P 
Sbjct  7    TIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ-VQRDLTAQGVLDLHGEPQPT  65

Query  65   VREWLTVL-----------LRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVR  113
            V E +  L            RRD+G         G   R  +CR     V+  R G+++ 
Sbjct  66   VAEMVETLGRPDRTLEGRWWRRDIG---------GVMVRFVVCRRGDRHVIAARDGDMLV  116

Query  114  LYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQ  173
            L      + + G    + G V  + G AE A + P+T  A EL      A  L  Y ++ 
Sbjct  117  LQ---LVAPQVG----LAGMVTAVLGPAEPANVEPLTGVATELAECTT-ASQLTQYGIAP  168

Query  174  RLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVES  233
                       +  +PT      +VA Q   G   +      D+   ++D+  GR+    
Sbjct  169  ---ASARVYAEIVGNPT--GWVEIVASQRHPGGTTTQT----DAAAGVLDSKLGRLVSLP  219

Query  234  VTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY  272
               G   Y    PG++ ++  A+  L+  LPAG  W  +
Sbjct  220  RRVGGDLYGSFLPGTQQNLERALDGLLELLPAG-AWLDH  257


>gi|240168345|ref|ZP_04747004.1| hypothetical protein MkanA1_03472 [Mycobacterium kansasii ATCC 
12478]
Length=283

 Score = 42.4 bits (98),  Expect = 0.072, Method: Compositional matrix adjust.
 Identities = 71/271 (27%), Positives = 112/271 (42%), Gaps = 23/271 (8%)

Query  5    TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM  64
            T+DG+ VL     +      LG+RP +P+ D  E      V  +L A G LD  G   P 
Sbjct  22   TIDGMLVLADRLHLVDFPVALGIRPNIPQDDLREIVWDQ-VRRDLTAQGVLDHNGYPHPT  80

Query  65   VREWLTVLLRRDLGLLVTIG--VPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTASD  122
            V   +  L R D  L         GG   R  +CR     V+  R+G+L+ L      + 
Sbjct  81   VASMVDTLSRPDRTLEARWWRRDVGGVMVRFVVCRKDDRHVIAVRNGDLLVLQ---LVAP  137

Query  123  EAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQLQM  182
            + G    + G V  + G A+ A + P+T  A EL      A  L  Y L+        ++
Sbjct  138  QVG----LAGMVTAVLGTADPASVEPLTGIASELAECTT-AAQLTRYGLAPTAARIYTEI  192

Query  183  VTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGR-ICVESVTSGQRRY  241
            V+        +   +VA Q   G   +       +   ++D+A GR + +  + SG+  Y
Sbjct  193  VS-----NPDSWVEIVASQRHPGGTTTHT----KAAAGVLDSAHGRVVSLPRIVSGE-LY  242

Query  242  QVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY  272
                PG+  ++  A+  L+  LPAG  W  +
Sbjct  243  GSFLPGTPQNLQLALDALVELLPAG-SWLDH  272


>gi|340628838|ref|YP_004747290.1| hypothetical protein MCAN_38881 [Mycobacterium canettii CIPT 
140010059]
 gi|340007028|emb|CCC46219.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=283

 Score = 42.4 bits (98),  Expect = 0.082, Method: Compositional matrix adjust.
 Identities = 69/279 (25%), Positives = 109/279 (40%), Gaps = 39/279 (13%)

Query  5    TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM  64
            T+DG+ V+     +      LG+RP +P+ D  +      V  +L A G LD  G   P 
Sbjct  22   TIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ-VQRDLTAQGVLDVHGEPQPT  80

Query  65   VREWLTVL-----------LRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVR  113
            V E +  L            RRD+G         G   R  +CR     V+  R G+++ 
Sbjct  81   VAEMVETLGRPDRTLEGRWWRRDIG---------GVMVRFVVCRRGDRHVIAARDGDMLV  131

Query  114  LYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQ  173
            L      + + G    + G V  + G AE A + P+T  A EL      A  L  Y ++ 
Sbjct  132  LQ---LVAPQVG----LAGMVTAVLGPAEPANVEPLTGVATELAECTT-ASQLTQYGIAP  183

Query  174  RLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVES  233
                       +  +PT      +VA Q   G   +      D+   ++D+  GR+    
Sbjct  184  ---ASARVYAEIVGNPT--GWVEIVASQRHPGGTTTQT----DAAAGVLDSKLGRLVSLP  234

Query  234  VTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY  272
               G   Y    PG++ ++  A+  L+  LPAG  W  +
Sbjct  235  RRVGGDLYGSFLPGTQQNLERALDGLLELLPAG-AWLDH  272


>gi|15608931|ref|NP_216310.1| hypothetical protein Rv1794 [Mycobacterium tuberculosis H37Rv]
 gi|15841263|ref|NP_336300.1| hypothetical protein MT1843 [Mycobacterium tuberculosis CDC1551]
 gi|31792982|ref|NP_855475.1| hypothetical protein Mb1822 [Mycobacterium bovis AF2122/97]
 80 more sequence titles
 Length=300

 Score = 42.4 bits (98),  Expect = 0.083, Method: Compositional matrix adjust.
 Identities = 48/181 (27%), Positives = 74/181 (41%), Gaps = 27/181 (14%)

Query  2    LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVG-ALDQAGN  60
            +T  VDG W+LQA+  +    PEL  RP +   D+ +    HP  A +   G  ++ A N
Sbjct  10   ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSNDWLNEHPGMAVMREQGIVVNDAVN  68

Query  61   ADPMVREWLTVLLRRDLGLLVTIG--------------------VPGGEPTRAAICRFAT  100
                 R  + VL   DL ++  +                     +P  E  R  + R   
Sbjct  69   EQVAAR--MKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNE-FRVVLARRGQ  125

Query  101  WWVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAV  160
             WV   R GN + +    T SD A    LV+  +E +   A+ A +  V V  +E+L A 
Sbjct  126  HWVSAVRVGNDITVDDV-TVSDSASIAALVMDGLESIHH-ADPAAINAVNVPMEEMLEAT  183

Query  161  R  161
            +
Sbjct  184  K  184


>gi|15611002|ref|NP_218383.1| hypothetical protein Rv3866 [Mycobacterium tuberculosis H37Rv]
 gi|31795040|ref|NP_857533.1| hypothetical protein Mb3896 [Mycobacterium bovis AF2122/97]
 gi|121639784|ref|YP_980008.1| hypothetical protein BCG_3929 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 50 more sequence titles
 Length=283

 Score = 42.4 bits (98),  Expect = 0.085, Method: Compositional matrix adjust.
 Identities = 69/279 (25%), Positives = 109/279 (40%), Gaps = 39/279 (13%)

Query  5    TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM  64
            T+DG+ V+     +      LG+RP +P+ D  +      V  +L A G LD  G   P 
Sbjct  22   TIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ-VQRDLTAQGVLDLHGEPQPT  80

Query  65   VREWLTVL-----------LRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVR  113
            V E +  L            RRD+G         G   R  +CR     V+  R G+++ 
Sbjct  81   VAEMVETLGRPDRTLEGRWWRRDIG---------GVMVRFVVCRRGDRHVIAARDGDMLV  131

Query  114  LYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQ  173
            L      + + G    + G V  + G AE A + P+T  A EL      A  L  Y ++ 
Sbjct  132  LQ---LVAPQVG----LAGMVTAVLGPAEPANVEPLTGVATELAECTT-ASQLTQYGIAP  183

Query  174  RLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVES  233
                       +  +PT      +VA Q   G   +      D+   ++D+  GR+    
Sbjct  184  ---ASARVYAEIVGNPT--GWVEIVASQRHPGGTTTQT----DAAAGVLDSKLGRLVSLP  234

Query  234  VTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY  272
               G   Y    PG++ ++  A+  L+  LPAG  W  +
Sbjct  235  RRVGGDLYGSFLPGTQQNLERALDGLLELLPAG-AWLDH  272


>gi|342861302|ref|ZP_08717950.1| hypothetical protein MCOL_20561 [Mycobacterium colombiense CECT 
3035]
 gi|342131202|gb|EGT84483.1| hypothetical protein MCOL_20561 [Mycobacterium colombiense CECT 
3035]
Length=300

 Score = 41.6 bits (96),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 47/179 (27%), Positives = 71/179 (40%), Gaps = 23/179 (12%)

Query  2    LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA  61
            +T  VDG W+LQA+  +    PEL  RP +   D+++    HP  A +   G ++     
Sbjct  10   ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSSDWLNEHPGMAVMREQGIVEN-DQV  67

Query  62   DPMVREWLTVLLRRDL-------------GLLVTIGVPGG------EPTRAAICRFATWW  102
            +  V   + VL   DL             G+L     P G         R  + R    W
Sbjct  68   NEHVAARMKVLAAPDLEVVALLSRGKLAYGVLDDENQPPGSRDIPDNEFRVVLARRGQHW  127

Query  103  VVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR  161
            V   R G  + +     A D A    LV+  +E +   AE A +  V V  +E+L A +
Sbjct  128  VSAVRVGGEITVDDVAVA-DSASIASLVIDALESIHH-AEPAAINAVNVPLEEMLEATK  184


>gi|298527340|ref|ZP_07014749.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298497134|gb|EFI32428.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=283

 Score = 40.8 bits (94),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 69/279 (25%), Positives = 108/279 (39%), Gaps = 39/279 (13%)

Query  5    TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM  64
            T+DG+ V+     +      LG+RP +P+ D  +      V  +L A G LD  G   P 
Sbjct  22   TIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ-VQRDLTAQGVLDLHGEPQPT  80

Query  65   VREWLTVL-----------LRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVR  113
            V E +  L            RRD+G         G   R  +CR     V+  R G+++ 
Sbjct  81   VAEMVETLGRPDRTLEGRWWRRDIG---------GVMVRFVVCRRGDRHVIAARDGDMLV  131

Query  114  LYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQ  173
            L      + + G    + G V  + G AE A + P+T  A EL      A  L  Y ++ 
Sbjct  132  LQ---LVAPQVG----LAGMVTAVLGPAEPANVEPLTGVATELAECTT-ASQLTQYGIAP  183

Query  174  RLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGRICVES  233
                       +  +PT       VA Q   G   +      D+   ++D+  GR+    
Sbjct  184  ---ASARVYAEIVGNPT--GWVETVASQRHPGGTTTQT----DAAAGVLDSKLGRLVSLP  234

Query  234  VTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY  272
               G   Y    PG++ ++  A+  L+  LPAG  W  +
Sbjct  235  RRVGGDLYGSFLPGTQQNLERALDGLLELLPAG-AWLDH  272


>gi|254820295|ref|ZP_05225296.1| hypothetical protein MintA_10221 [Mycobacterium intracellulare 
ATCC 13950]
Length=300

 Score = 40.4 bits (93),  Expect = 0.26, Method: Compositional matrix adjust.
 Identities = 47/179 (27%), Positives = 70/179 (40%), Gaps = 23/179 (12%)

Query  2    LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA  61
            +T  VDG W+LQA+  +    PEL  RP +   D+ +    HP  A +   G ++     
Sbjct  10   ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSNDWLNEHPGMAVMREQGIVEN-DEV  67

Query  62   DPMVREWLTVLLRRDL-------------GLLVTIGVPGG------EPTRAAICRFATWW  102
            +  V   + VL   DL             G+L     P G         R  + R    W
Sbjct  68   NEHVAARMKVLAAPDLEVVALLSRGKLAYGVLDDENQPPGSRDIPDNEFRVVLARRGQHW  127

Query  103  VVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR  161
            V   R G  + +     A D A    LV+  +E +   AE A +  V V  +E+L A +
Sbjct  128  VSAVRVGGEITVDDVAVA-DSASIASLVIDALESIHH-AEPAAINAVNVPLEEMLEATK  184


>gi|118472873|ref|YP_884475.1| hypothetical protein MSMEG_0057 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118174160|gb|ABK75056.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=282

 Score = 40.4 bits (93),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 44/145 (31%), Positives = 63/145 (44%), Gaps = 8/145 (5%)

Query  5    TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM  64
            T+DG+ V+    G+    P +G+R  +P+ D   + +   V  +L A G LD  GN  P 
Sbjct  23   TIDGMLVIADKLGLTDFPPSMGIRLNIPQPDL-RKVVWEQVERDLSAQGVLDVYGNPHPE  81

Query  65   VREWLTVLLRRDLGLLVTIG--VPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTASD  122
            V   +  L R D  L         GG+  R  +CR     VV  R  +L+ L        
Sbjct  82   VAAMVDTLARADRTLECRWWRRDAGGKMIRFVVCRKGGRHVVAARDNDLLVLQRVAPQIG  141

Query  123  EAGAGELVVGQ-----VERLCGVAE  142
             AG    V+G+     VE L GVA+
Sbjct  142  LAGMVMTVLGEGSPANVEPLTGVAD  166


>gi|240170253|ref|ZP_04748912.1| hypothetical protein MkanA1_13143 [Mycobacterium kansasii ATCC 
12478]
Length=275

 Score = 40.0 bits (92),  Expect = 0.36, Method: Compositional matrix adjust.
 Identities = 68/253 (27%), Positives = 98/253 (39%), Gaps = 31/253 (12%)

Query  25   LGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPMVREWLTVLLRRDLGLLVTIG  84
            LG+RP +P+ +  +  +   V  +L A G LDQ G   P V   +  L R D  L     
Sbjct  42   LGIRPNIPQKELPD-VVWDRVRRDLTAQGVLDQYGQPHPTVAAMVDTLSRPDRTLEGRWW  100

Query  85   --VPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTASDEAGAGELVVG-----QVERL  137
                GG   R  +CR     VV  R G ++ L         AG    V+G      VE L
Sbjct  101  RRYVGGAMARFVVCRKGDRHVVAARDGQMLVLQLVEPQVGLAGMITTVLGPALPANVEPL  160

Query  138  CGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQLQMVTMAADPTRSAHATL  197
             GVA    L   T  A    H V  A T R +               +  +P  S+   +
Sbjct  161  AGVASE--LAECTTAAPPARHGV-PAATTRVF-------------TEIVNNP--SSWVEI  202

Query  198  VALQAGVGPEKSARILVGDSTVAIVDTAAGRICVESVTSGQRRYQVLSPGSRSDIGGAVQ  257
            VA Q   G   +      D+   ++D+  GR+       G   Y    PG++ ++  A+ 
Sbjct  203  VASQRHSGGTTTQT----DAAAGVLDSTLGRLVSLPRCVGGELYGCFLPGTQQNLQRALD  258

Query  258  RLIRRLPAGDEWY  270
             L+  LPAG  W+
Sbjct  259  SLLELLPAG-AWF  270


>gi|296164782|ref|ZP_06847343.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899859|gb|EFG79304.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=300

 Score = 40.0 bits (92),  Expect = 0.38, Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 25/180 (13%)

Query  2    LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA  61
            +T  VDG W+LQA+  +    PEL  RP +   D+ +    HP  A +   G ++     
Sbjct  10   ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSNDWLNEHPGMAVMREQGIVEN-DQV  67

Query  62   DPMVREWLTVLLRRDLGLLVTIG--------------------VPGGEPTRAAICRFATW  101
            +  V   + VL   DL ++  +                     +P  E  R  + R    
Sbjct  68   NEHVAARMRVLAAPDLEVIALLSRGKLLYGVVDDENQPPGSRDIPDNE-FRVVLARRGQH  126

Query  102  WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR  161
            WV   R G+ + +     A D A    LV+  +E +   AE A +  V V  +E+L A +
Sbjct  127  WVSAVRVGSDITVDDVAIA-DSASIASLVLDALESIHH-AEPAAINAVNVPLEEMLEATK  184


>gi|41407607|ref|NP_960443.1| hypothetical protein MAP1509 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118462612|ref|YP_882106.1| hypothetical protein MAV_2920 [Mycobacterium avium 104]
 gi|254775396|ref|ZP_05216912.1| hypothetical protein MaviaA2_12106 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41395960|gb|AAS03826.1| hypothetical protein MAP_1509 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118163899|gb|ABK64796.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=300

 Score = 40.0 bits (92),  Expect = 0.40, Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 71/180 (40%), Gaps = 25/180 (13%)

Query  2    LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA  61
            +T  VDG W+LQA+  +    PEL  RP +   D+ +    HP  A +   G + +    
Sbjct  10   ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSNDWLNDHPGMAVMREQGIV-EGDQV  67

Query  62   DPMVREWLTVLLRRDLGLLVTIG--------------------VPGGEPTRAAICRFATW  101
            +  V   + VL   DL ++  +                     +P  E  R  + R    
Sbjct  68   NEQVAARMRVLAAPDLEVIALLSRGKLAYGVIDDQNQPPGSRDIPDNE-FRVVLARRGQH  126

Query  102  WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR  161
            WV   R G  + +     A D A    LV+  +E +   AE A +  V V  +E+L A +
Sbjct  127  WVSAVRVGGEITVDDVAVA-DSASIASLVIDALESIHH-AEPAAINAVNVPLEEMLEATK  184


>gi|183982683|ref|YP_001850974.1| hypothetical protein MMAR_2676 [Mycobacterium marinum M]
 gi|183176009|gb|ACC41119.1| conserved protein [Mycobacterium marinum M]
Length=300

 Score = 39.7 bits (91),  Expect = 0.48, Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 25/180 (13%)

Query  2    LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA  61
            +T  VDG W+LQA+  +    PEL  RP +   D+ +    HP  A +   G +      
Sbjct  10   ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSNDWLNEHPGMAVMREQGIV-VGDTV  67

Query  62   DPMVREWLTVLLRRDLGLLVTIG--------------------VPGGEPTRAAICRFATW  101
            +  V   + VL   DL ++  +                     +P  E  R  + R    
Sbjct  68   NEQVAARMRVLAAPDLEVVALLSRGKLLYGVVDNEDQPPGSRDIPDNE-FRVVLARRGQH  126

Query  102  WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR  161
            WV   R GN + +    + SD A    LV+  +E +   A+ A +  V V  +E+L A +
Sbjct  127  WVSAVRVGNDITVDDV-SVSDSASIAALVIDGLESIHH-ADPAAINAVNVPLEEMLEATK  184


>gi|169629313|ref|YP_001702962.1| hypothetical protein MAB_2227c [Mycobacterium abscessus ATCC 
19977]
 gi|169241280|emb|CAM62308.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=287

 Score = 39.3 bits (90),  Expect = 0.66, Method: Compositional matrix adjust.
 Identities = 80/288 (28%), Positives = 115/288 (40%), Gaps = 36/288 (12%)

Query  5    TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERA-LRHPVAAELMAVGALDQAGNADP  63
            TVD  W L A T    T P + L   +P  D A+RA        EL   G L+  G  DP
Sbjct  14   TVDQAWFL-ADTLSAGTFPWV-LAVTVPFRDEAQRAGFNAQRVQELTRAGILEPDGTVDP  71

Query  64   MVREWLTVLLRRDLGL---LVTIGVPGGEPTRAAICRFAT----WWVVLERHGNLVRLYP  116
             V  W+  + R D  L    V  G    +  R  I R  +      VV  R+ +L+    
Sbjct  72   AVAGWIRTVCRPDRWLELRYVAAGSENPDVMRGIIARKQSQGRAQTVVSLRNAHLITF--  129

Query  117  AGTASDEAGAGELVVGQVERLCGVAEAAPLR------PVTV--DADELLHAVRDAGTLRS  168
              T  D   +  LV   V    G+   AP R      P  V   ADE L +      +  
Sbjct  130  --TVVDADDSSALVPSVV---AGLRWRAPARFPEFTLPTNVGAKADEQLRSGASLADVMG  184

Query  169  YLLSQRLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGR  228
            YL          Q V  +A      +  +VA Q     ++++ +      +++VDT+AGR
Sbjct  185  YLGVP----PAAQNVVESAFVGNRNYVEVVAGQRDSTTQQTSEV-----GISVVDTSAGR  235

Query  229  ICVESVTSGQRRY-QVLSPGSRSDIGGAVQRLIRRLPAGDEWYSYRRV  275
            I V    +G   +    +PG+   I  AV++L+  LP G  W+   RV
Sbjct  236  ILVSPHRAGDGTWLSTFAPGAPFAIAVAVEQLMATLPNG-HWFPDARV  282


>gi|118618464|ref|YP_906796.1| hypothetical protein MUL_3081 [Mycobacterium ulcerans Agy99]
 gi|118570574|gb|ABL05325.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=300

 Score = 39.3 bits (90),  Expect = 0.68, Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 25/180 (13%)

Query  2    LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA  61
            +T  VDG W+LQA+  +    PEL  RP +   D+ +    HP  A +   G +      
Sbjct  10   ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDSNDWLNEHPGMAVMREQGIV-VGDTL  67

Query  62   DPMVREWLTVLLRRDLGLLVTIG--------------------VPGGEPTRAAICRFATW  101
            +  V   + VL   DL ++  +                     +P  E  R  + R    
Sbjct  68   NEQVAARMRVLAAPDLEVVALLSRGKLLYGVVDNEDQPPGSRDIPDNE-FRVVLARRGQH  126

Query  102  WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR  161
            WV   R GN + +    + SD A    LV+  +E +   A+ A +  V V  +E+L A +
Sbjct  127  WVSAVRVGNDITVDDV-SVSDSASIAALVIDGLESIHH-ADPAAINAVNVPLEEMLEATK  184


>gi|169245927|gb|ACA50948.1| conserved protein [Mycobacterium marinum DL240490]
Length=314

 Score = 38.9 bits (89),  Expect = 0.77, Method: Compositional matrix adjust.
 Identities = 74/323 (23%), Positives = 120/323 (38%), Gaps = 71/323 (21%)

Query  2    LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA  61
            L+TT +GLW+  A+  V +  P L +RP+     + +  +      E +    +   G  
Sbjct  12   LSTTSEGLWLTAALCNVAKLPPALKIRPI----GSVQATITDHPGIEALENAGICGGGVV  67

Query  62   DPMVREWLTVL-----------LRRDLGLLVTIGVPG---------------------GE  89
            DP V  W+T L            RR++      G P                        
Sbjct  68   DPDVAAWVTTLGRPDIEVDVVATRREMPADRLAGPPAIFAAPDDAVAAAEALAQWHAQRP  127

Query  90   PTRA-AICRFATWWVVLERHGNLVRLYPAGTASDEAGAGELVVGQVER-------LCGVA  141
            P R  A+CR    WV         RL+  G      G  ++VV  V         +  + 
Sbjct  128  PQRVVALCRRDNTWVAA------ARLWSPG----HDGCDDVVVSPVNGDDIAQVVIDALG  177

Query  142  EAAPLRPVTVDADELL--------HAVRDAGTLRSYLLSQRLDVDQLQMVTMAADPTRSA  193
             A P R   ++++            A  +   + S +    L V Q ++V  +AD   + 
Sbjct  178  PADPARFHGINSEAAALATALTTWQANPNIDIVTSLVERVGLSVPQARVVEASAD-DGAT  236

Query  194  HATLVALQAGV-GPEKSARILVGDSTVAIVDTAAGRICVES-VTSGQRRYQVLSPGSRSD  251
             A + A Q  + GP       +    V + DT  GR+ V + V    R++  L PGS + 
Sbjct  237  RAAITATQFSIDGPA------LAPHAVTVADTTLGRVVVSTTVGPDGRKWTTLLPGSEAA  290

Query  252  IGGAVQRLIRRLPAGDEWYSYRR  274
            I  A   L+  LP+G  W +++R
Sbjct  291  IRTAAIELLETLPSGLNWRTHQR  313


>gi|296138069|ref|YP_003645312.1| hypothetical protein Tpau_0330 [Tsukamurella paurometabola DSM 
20162]
 gi|296026203|gb|ADG76973.1| hypothetical protein Tpau_0330 [Tsukamurella paurometabola DSM 
20162]
Length=287

 Score = 38.5 bits (88),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 45/153 (30%), Positives = 67/153 (44%), Gaps = 5/153 (3%)

Query  5    TVDGLWVLQAVTGVEQTCP-ELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADP  63
            ++D L +L  +  V +  P  L + P + R D  + A+   V   L+A G +D  G  DP
Sbjct  16   SIDELSLLMRLADVTELAPIVLAVHPNVYRPDD-QSAVDLAVLPGLIAAGLVDADGAIDP  74

Query  64   MVREWLTVLLRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVRLYPAGTASDE  123
             V  WL  L      + + +   G    R AI R     VV+ RH +L+ L   G  +D 
Sbjct  75   EVARWLRALQAPAAEIALRV-FDGDSALRGAIVRHDDLVVVVFRHDDLLTL--QGYRTDG  131

Query  124  AGAGELVVGQVERLCGVAEAAPLRPVTVDADEL  156
                  VV  V R+ G  + A    +T+ A EL
Sbjct  132  EDFDSTVVDPVWRVLGSCDPADFDSLTLGAAEL  164


>gi|240172854|ref|ZP_04751513.1| hypothetical protein MkanA1_26312 [Mycobacterium kansasii ATCC 
12478]
Length=300

 Score = 38.5 bits (88),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 44/180 (25%), Positives = 71/180 (40%), Gaps = 25/180 (13%)

Query  2    LTTTVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNA  61
            +T  VDG W+LQA+  +    PEL  RP +   D  +    HP  A +   G +      
Sbjct  10   ITVNVDGFWMLQALLDIRHVAPELRCRPYV-STDNNDWLNEHPGMAVMREQGIV-VGDTV  67

Query  62   DPMVREWLTVLLRRDLGLLVTIG--------------------VPGGEPTRAAICRFATW  101
            +  V   + VL   DL ++  +                     +P  E  R  + R    
Sbjct  68   NEQVAARMRVLAAPDLEVVALLSRGKLLYGVVDDENQPPGSRDIPDNE-FRVVLARRGQH  126

Query  102  WVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVR  161
            WV   R GN + +    + +D A    LV+  +E +   A+ A +  V V  +E+L A +
Sbjct  127  WVSAVRVGNDITVDDV-SVTDSASIAALVIDGLESIHH-ADPAAINAVNVPLEEMLEATK  184


>gi|297160610|gb|ADI10322.1| hypothetical protein SBI_07202 [Streptomyces bingchenggensis 
BCW-1]
Length=519

 Score = 37.0 bits (84),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 44/162 (28%), Positives = 69/162 (43%), Gaps = 18/162 (11%)

Query  79   LLVTIGVPGG------EPTRAAICRFATWWVVLERHGNLVRL---YPAGTAS---DEAGA  126
            LL   G+ GG      E T    C      +V+ +  N + L   Y A  AS   +E  A
Sbjct  353  LLSKFGMEGGKYEADCEATDVGGCSE----IVVNKSANKLYLGTDYRASAASGPSNEIVA  408

Query  127  GELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQLQMVTMA  186
             +L  G+V      AE  PL PV++D D  L A ++A TL       R+D    +   + 
Sbjct  409  IDLKTGKVTAKADGAEGGPLVPVSLDKDGSLIAYQEA-TLSQGSAVWRVDTKSYEKKKLM  467

Query  187  ADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAGR  228
             +P  +A    V+L   V      R+ +G+++     T +G+
Sbjct  468  QNPEETAFIESVSLHHQV-IYAGGRLYIGNTSATKPSTDSGK  508


>gi|108797043|ref|YP_637240.1| hypothetical protein Mmcs_0062 [Mycobacterium sp. MCS]
 gi|119866128|ref|YP_936080.1| hypothetical protein Mkms_0071 [Mycobacterium sp. KMS]
 gi|108767462|gb|ABG06184.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119692217|gb|ABL89290.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=282

 Score = 37.0 bits (84),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 69/286 (25%), Positives = 114/286 (40%), Gaps = 53/286 (18%)

Query  5    TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM  64
            T+DG+ V+          P LG+R  +P+ D   + +   VA +L   G L+  G+  P 
Sbjct  23   TIDGMLVIADRMSASDFPPSLGIRLNIPQPDL-RKIVWDQVARDLTEQGVLNFYGDPHPE  81

Query  65   VREWLTVL-----------LRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLV-  112
            V   +  L            RRDL         GG+  R  +CR     VV  R   ++ 
Sbjct  82   VAAMVDTLSRSDRVLEGRWWRRDL---------GGKMVRFVVCRKGDRHVVAARDDEMLV  132

Query  113  --RLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSY-  169
              R+ P      + G   +V      + G A  A + P+T  A +L    R A  L++Y 
Sbjct  133  LQRIAP------QIGLANMVT----TVLGTAPPADVEPLTGVAAKLAQC-RTANELQAYG  181

Query  170  --LLSQRLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAG  227
              L S R   D      + ++P      T      G G + +  +  G     ++D+  G
Sbjct  182  IALTSARAYAD------IISEPASWVELTATERHPG-GTQTTTDVAAG-----VLDSPHG  229

Query  228  RI-CVESVTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY  272
            RI  +    SG+  Y    PG++ ++  A+  L+  LP+   W+ +
Sbjct  230  RIVSIPRRVSGE-LYGSFLPGTQENLQRALDGLVDFLPS-KTWFDH  273


>gi|126432665|ref|YP_001068356.1| hypothetical protein Mjls_0052 [Mycobacterium sp. JLS]
 gi|126232465|gb|ABN95865.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=282

 Score = 37.0 bits (84),  Expect = 3.6, Method: Compositional matrix adjust.
 Identities = 67/285 (24%), Positives = 110/285 (39%), Gaps = 51/285 (17%)

Query  5    TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM  64
            T+DG+ V+          P LG+R  +P+ D   + +   VA +L   G L+  G+  P 
Sbjct  23   TIDGMLVIADRMSASDFPPSLGIRLNIPQPDL-RKIVWDQVARDLTEQGVLNFYGDPHPE  81

Query  65   VREWLTVL-----------LRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLV-  112
            V   +  L            RRDL         GG+  R  +CR     VV  R   ++ 
Sbjct  82   VAAMVDTLSRSDRVLEGRWWRRDL---------GGKMVRFVVCRKGDRHVVAARDDEMLV  132

Query  113  --RLYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSY-  169
              R+ P      + G   +V      + G A  A + P+T  A +L    R A  L++Y 
Sbjct  133  LQRIAP------QIGLANMVT----TVLGTAPPADVEPLTGVAAKLAQC-RTANELQAYG  181

Query  170  --LLSQRLDVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDTAAG  227
              L S R   D      + ++P      T      G G + +  +  G     ++D+  G
Sbjct  182  IALTSARAYAD------IISEPASWVELTATERHPG-GTQTTTDVAAG-----VLDSPHG  229

Query  228  RICVESVTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY  272
            RI           Y    PG++ ++  A+  L+  LP+   W+ +
Sbjct  230  RIVSIPRRVSGELYGSFLPGTQENLQRALDGLVDFLPS-KTWFDH  273


>gi|291302865|ref|YP_003514143.1| lanthionine synthetase C family protein [Stackebrandtia nassauensis 
DSM 44728]
 gi|290572085|gb|ADD45050.1| Lanthionine synthetase C family protein [Stackebrandtia nassauensis 
DSM 44728]
Length=409

 Score = 36.6 bits (83),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 25/82 (31%), Positives = 35/82 (43%), Gaps = 3/82 (3%)

Query  101  WWVVLERHGNLVRLYPAGTASD---EAGAGELVVGQVERLCGVAEAAPLRPVTVDADELL  157
            WW+  E H NL R++P+G A+       AG L +     + G +       +   AD LL
Sbjct  184  WWMPAENHPNLARIHPSGAATTGLAHGVAGPLALLATAHVAGWSVPGQAEGIDHAADWLL  243

Query  158  HAVRDAGTLRSYLLSQRLDVDQ  179
               RD GT    +    LD  Q
Sbjct  244  DWRRDDGTWPPSVTGDELDTAQ  265


>gi|222625651|gb|EEE59783.1| hypothetical protein OsJ_12294 [Oryza sativa Japonica Group]
Length=928

 Score = 36.2 bits (82),  Expect = 5.2, Method: Composition-based stats.
 Identities = 23/83 (28%), Positives = 41/83 (50%), Gaps = 0/83 (0%)

Query  141  AEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQLQMVTMAADPTRSAHATLVAL  200
            +E+AP  P+ ++  + LH + D   + S   S  L+  +L  V        SAH +L  L
Sbjct  523  SESAPDTPIHIEDIDGLHELPDHKAMTSDTKSVDLESIELVSVDQLKSALASAHKSLSTL  582

Query  201  QAGVGPEKSARILVGDSTVAIVD  223
               +  E+SA  +  D T+A+++
Sbjct  583  YTELENERSAAAIAADETMAMIN  605


>gi|297601549|ref|NP_001051039.2| Os03g0708700 [Oryza sativa Japonica Group]
 gi|62733556|gb|AAX95673.1| Protein of unknown function, DUF593, putative [Oryza sativa Japonica 
Group]
 gi|108710692|gb|ABF98487.1| expressed protein [Oryza sativa Japonica Group]
 gi|255674824|dbj|BAF12953.2| Os03g0708700 [Oryza sativa Japonica Group]
Length=957

 Score = 36.2 bits (82),  Expect = 5.3, Method: Composition-based stats.
 Identities = 23/83 (28%), Positives = 41/83 (50%), Gaps = 0/83 (0%)

Query  141  AEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQLQMVTMAADPTRSAHATLVAL  200
            +E+AP  P+ ++  + LH + D   + S   S  L+  +L  V        SAH +L  L
Sbjct  552  SESAPDTPIHIEDIDGLHELPDHKAMTSDTKSVDLESIELVSVDQLKSALASAHKSLSTL  611

Query  201  QAGVGPEKSARILVGDSTVAIVD  223
               +  E+SA  +  D T+A+++
Sbjct  612  YTELENERSAAAIAADETMAMIN  634


>gi|218193615|gb|EEC76042.1| hypothetical protein OsI_13222 [Oryza sativa Indica Group]
Length=963

 Score = 36.2 bits (82),  Expect = 5.8, Method: Composition-based stats.
 Identities = 23/83 (28%), Positives = 41/83 (50%), Gaps = 0/83 (0%)

Query  141  AEAAPLRPVTVDADELLHAVRDAGTLRSYLLSQRLDVDQLQMVTMAADPTRSAHATLVAL  200
            +E+AP  P+ ++  + LH + D   + S   S  L+  +L  V        SAH +L  L
Sbjct  558  SESAPDTPIHIEDIDGLHELPDHKAMTSDTKSVDLESIELVSVDQLKSALASAHKSLSTL  617

Query  201  QAGVGPEKSARILVGDSTVAIVD  223
               +  E+SA  +  D T+A+++
Sbjct  618  YTELENERSAAAIAADETMAMIN  640


>gi|108797358|ref|YP_637555.1| putative DNA-binding protein [Mycobacterium sp. MCS]
 gi|119866442|ref|YP_936394.1| putative DNA-binding protein [Mycobacterium sp. KMS]
 gi|108767777|gb|ABG06499.1| putative DNA-binding protein [Mycobacterium sp. MCS]
 gi|119692531|gb|ABL89604.1| putative DNA-binding protein [Mycobacterium sp. KMS]
Length=314

 Score = 35.8 bits (81),  Expect = 6.5, Method: Compositional matrix adjust.
 Identities = 64/244 (27%), Positives = 97/244 (40%), Gaps = 24/244 (9%)

Query  37   AERALRHPVAAELMA----VGALDQAGNADPMVREWLTVLLRRDLGLLVTIGVPGGEPTR  92
            ++ A R P  AE +A    +G L   G  D  V +W+ V+ R +  L +      G   R
Sbjct  36   SQEADRAPFTAETVASLETLGVLSGDGVVDARVADWVRVVCRAEQWLDLRFVSGRGALLR  95

Query  93   AAICRFATWWVVLERHGNLVRLYPAGTASDEAGAGELVVGQVERLC-GVAEAAPLRPVTV  151
              + R A   VV  R  +L+       A D   A       V  LC G++  AP R    
Sbjct  96   GVVARRADQTVVALRSRSLITF--TRMAIDHPHA------LVPVLCAGLSGRAPARFAEF  147

Query  152  DADELLHAVRDAGTLRSYLLSQRLDV----DQLQMVTMAADPTRSAHATLVALQAGVGPE  207
                 + A  D    +   L++ LD        + V  AA  T   +  +VA     G  
Sbjct  148  TLPAAVGARADEQIRQGTPLAEVLDFLGIPPSARPVVEAAFDTSRTYVEIVA-----GEH  202

Query  208  KSARILVGDSTVAIVDTAAGRICVESVTSGQRRY-QVLSPGSRSDIGGAVQRLIRRLPAG  266
            +    +     V++VDT  GR+ V  V +    +    +PG+   I  AV+RL   LP+G
Sbjct  203  RDGHRVTTQVGVSVVDTTEGRVLVSPVRAFDGEWVSTFAPGTPFAIAAAVERLTGSLPSG  262

Query  267  DEWY  270
              W+
Sbjct  263  -AWF  265


>gi|120401098|ref|YP_950927.1| hypothetical protein Mvan_0070 [Mycobacterium vanbaalenii PYR-1]
 gi|119953916|gb|ABM10921.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=283

 Score = 35.8 bits (81),  Expect = 7.2, Method: Compositional matrix adjust.
 Identities = 71/288 (25%), Positives = 111/288 (39%), Gaps = 57/288 (19%)

Query  5    TVDGLWVLQAVTGVEQTCPELGLRPLLPRLDTAERALRHPVAAELMAVGALDQAGNADPM  64
            T+DG+ V+  +  +      LG+RP +P  D   + +   V  +L A G L   G+  P 
Sbjct  23   TIDGMLVIADLLHLVDFPLSLGIRPNIPYEDQ-RKIVWDQVTRDLTAQGILTAYGDPHPE  81

Query  65   VREWLTVL-----------LRRDLGLLVTIGVPGGEPTRAAICRFATWWVVLERHGNLVR  113
            V   +  L            RRDLG         G+  R  +CR     VV  R  +++ 
Sbjct  82   VAAMVDALSRPDRTLDCRWWRRDLG---------GKMVRFVVCRKGDRHVVAARDEDMLV  132

Query  114  LYPAGTASDEAGAGELVVGQVERLCGVAEAAPLRPVTVDADELLHAVRDAGTLRSY---L  170
            L         A    +V+G        A AA + P+T  A +L  A R A  + +Y    
Sbjct  133  LQRVAPQIGLAAMVGVVIGG-------APAADVEPLTGIATKLAEA-RTAEQIGAYGQPP  184

Query  171  LSQRL------DVDQLQMVTMAADPTRSAHATLVALQAGVGPEKSARILVGDSTVAIVDT  224
            LS ++      + D    +T A       H      QAGVG               ++D+
Sbjct  185  LSAKIYAEATANPDSWVEITAA-----ERHPGGTYSQAGVG-------------AGVLDS  226

Query  225  AAGRICVESVTSGQRRYQVLSPGSRSDIGGAVQRLIRRLPAGDEWYSY  272
            A GRI       G   Y    PG++ ++  A+  L+  LP+   W+ +
Sbjct  227  AHGRIVSIPRQVGGELYGSFLPGTQENLQRALDGLVEFLPS-RAWFDH  273


>gi|240173074|ref|ZP_04751732.1| hypothetical protein MkanA1_27426 [Mycobacterium kansasii ATCC 
12478]
 gi|296165330|ref|ZP_06847872.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899346|gb|EFG78810.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=306

 Score = 35.4 bits (80),  Expect = 9.4, Method: Compositional matrix adjust.
 Identities = 26/66 (40%), Positives = 35/66 (54%), Gaps = 7/66 (10%)

Query  2   LTTTVDGLWVLQAVTGVEQTCPELGLRPL-LPRLDTAERALRHPVAAELMAVGALDQAGN  60
           +T  ++GLW+LQA+ G+ Q  PEL  RP   PR    +    HP  A L+  G  D+   
Sbjct  14  ITVNLEGLWLLQAMLGIPQLAPELRGRPYGQPR--NTDWLTAHPGLAVLVDQGIADE---  68

Query  61  ADPMVR  66
            D MVR
Sbjct  69  -DAMVR  73



Lambda     K      H
   0.320    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 435544382258


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40