BLAST Search Results


BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3901c

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15611037|ref|NP_218418.1|  hypothetical protein Rv3901c [Mycob...   285    2e-75
gi|289572553|ref|ZP_06452780.1|  membrane protein [Mycobacterium ...   284    4e-75
gi|289445501|ref|ZP_06435245.1|  membrane protein [Mycobacterium ...   284    4e-75
gi|15843532|ref|NP_338569.1|  hypothetical protein MT4018 [Mycoba...   283    4e-75
gi|31795074|ref|NP_857567.1|  hypothetical protein Mb3931c [Mycob...   281    2e-74
gi|308371545|ref|ZP_07667199.1|  membrane protein [Mycobacterium ...   256    5e-67
gi|121639812|ref|YP_980036.1|  hypothetical protein BCG_3958c [My...   239    1e-61
gi|167969436|ref|ZP_02551713.1|  hypothetical membrane protein [M...   222    1e-56
gi|254233386|ref|ZP_04926712.1|  hypothetical protein TBCG_03828 ...   221    3e-56
gi|340628872|ref|YP_004747324.1|  hypothetical protein MCAN_39221...   198    3e-49
gi|340628871|ref|YP_004747323.1|  hypothetical protein MCAN_39211...   111    4e-23
gi|183983062|ref|YP_001851353.1|  hypothetical protein MMAR_3063 ...  97.4    6e-19
gi|289441342|ref|ZP_06431086.1|  possible membrane protein [Mycob...  87.8    5e-16
gi|118617823|ref|YP_906155.1|  hypothetical protein MUL_2309 [Myc...  84.3    5e-15
gi|183983064|ref|YP_001851355.1|  hypothetical protein MMAR_3065 ...  81.6    3e-14
gi|118617821|ref|YP_906153.1|  hypothetical protein MUL_2307 [Myc...  80.1    9e-14
gi|41410425|ref|NP_963261.1|  hypothetical protein MAP4327c [Myco...  79.0    2e-13
gi|240168380|ref|ZP_04747039.1|  hypothetical protein MkanA1_0365...  66.6    1e-09
gi|296167165|ref|ZP_06849572.1|  conserved hypothetical protein [...  66.2    1e-09
gi|296167166|ref|ZP_06849573.1|  conserved hypothetical protein [...  66.2    2e-09
gi|183983072|ref|YP_001851363.1|  hypothetical protein MMAR_3073 ...  57.0    1e-06
gi|118462437|ref|YP_884401.1|  hypothetical protein MAV_5290 [Myc...  55.8    2e-06
gi|41410426|ref|NP_963262.1|  hypothetical protein MAP4328c [Myco...  50.4    9e-05
gi|254551110|ref|ZP_05141557.1|  hypothetical protein Mtube_11711...  48.1    4e-04
gi|289447702|ref|ZP_06437446.1|  conserved hypothetical protein [...  46.2    0.002
gi|240173487|ref|ZP_04752145.1|  hypothetical protein MkanA1_2952...  46.2    0.002
gi|167967775|ref|ZP_02550052.1|  hypothetical protein MtubH3_0696...  38.1    0.45 
gi|306972853|ref|ZP_07485514.1|  alanine and proline rich membran...  35.0    3.3  
gi|254232608|ref|ZP_04925935.1|  hypothetical protein TBCG_02415 ...  33.9    8.3  
gi|15841999|ref|NP_337036.1|  hypothetical protein MT2548 [Mycoba...  33.9    8.3  
gi|339295361|gb|AEJ47472.1|  hypothetical alanine and proline ric...  33.9    9.2  
gi|15609610|ref|NP_216989.1|  alanine and proline rich membrane p...  33.9    9.2  


>gi|15611037|ref|NP_218418.1| hypothetical protein Rv3901c [Mycobacterium tuberculosis H37Rv]
 gi|148663768|ref|YP_001285291.1| hypothetical protein MRA_3940 [Mycobacterium tuberculosis H37Ra]
 gi|148825109|ref|YP_001289863.1| hypothetical protein TBFG_13936 [Mycobacterium tuberculosis F11]
 32 more sequence titles
 gi|253800951|ref|YP_003033953.1| hypothetical protein TBMG_03949 [Mycobacterium tuberculosis KZN 
1435]
 gi|289441344|ref|ZP_06431088.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289556169|ref|ZP_06445379.1| membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289567856|ref|ZP_06448083.1| membrane protein [Mycobacterium tuberculosis T17]
 gi|289747745|ref|ZP_06507123.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289748439|ref|ZP_06507817.1| membrane protein [Mycobacterium tuberculosis T92]
 gi|289756036|ref|ZP_06515414.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289760073|ref|ZP_06519451.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298527373|ref|ZP_07014782.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308232605|ref|ZP_07664129.1| membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308376275|ref|ZP_07668237.1| membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|308378512|ref|ZP_07668775.1| membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308379662|ref|ZP_07669016.1| membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|1944588|emb|CAB08100.1| POSSIBLE MEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148507920|gb|ABQ75729.1| putative membrane protein [Mycobacterium tuberculosis H37Ra]
 gi|148723636|gb|ABR08261.1| hypothetical membrane protein [Mycobacterium tuberculosis F11]
 gi|253322455|gb|ACT27058.1| membrane protein [Mycobacterium tuberculosis KZN 1435]
 gi|289414263|gb|EFD11503.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289440801|gb|EFD23294.1| membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289541609|gb|EFD45258.1| membrane protein [Mycobacterium tuberculosis T17]
 gi|289688273|gb|EFD55761.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289689026|gb|EFD56455.1| membrane protein [Mycobacterium tuberculosis T92]
 gi|289696623|gb|EFD64052.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289715637|gb|EFD79649.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298497167|gb|EFI32461.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308213415|gb|EFO72814.1| membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308351679|gb|EFP40530.1| membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|308352277|gb|EFP41128.1| membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308356279|gb|EFP45130.1| membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|326905734|gb|EGE52667.1| membrane protein [Mycobacterium tuberculosis W-148]
 gi|328460679|gb|AEB06102.1| membrane protein [Mycobacterium tuberculosis KZN 4207]
 gi|344221741|gb|AEN02372.1| hypothetical protein MTCTRI2_3980 [Mycobacterium tuberculosis 
CTRI-2]
Length=149

 Score =  285 bits (728),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 148/149 (99%), Positives = 149/149 (100%), Gaps = 0/149 (0%)

Query  1    VQAANRRSADTICGVTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPA  60
            +QAANRRSADTICGVTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPA
Sbjct  1    MQAANRRSADTICGVTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPA  60

Query  61   TTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP  120
            TTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP
Sbjct  61   TTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP  120

Query  121  ALDAKHRDAARASDRLPHNDRNGEWWHSS  149
            ALDAKHRDAARASDRLPHNDRNGEWWHSS
Sbjct  121  ALDAKHRDAARASDRLPHNDRNGEWWHSS  149


>gi|289572553|ref|ZP_06452780.1| membrane protein [Mycobacterium tuberculosis K85]
 gi|339633891|ref|YP_004725533.1| hypothetical protein MAF_39160 [Mycobacterium africanum GM041182]
 gi|289536984|gb|EFD41562.1| membrane protein [Mycobacterium tuberculosis K85]
 gi|339333247|emb|CCC28984.1| putative membrane protein [Mycobacterium africanum GM041182]
Length=149

 Score =  284 bits (726),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 147/149 (99%), Positives = 149/149 (100%), Gaps = 0/149 (0%)

Query  1    VQAANRRSADTICGVTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPA  60
            +QAANRRSADTICGVTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPA
Sbjct  1    MQAANRRSADTICGVTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPA  60

Query  61   TTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP  120
            TTS+PTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP
Sbjct  61   TTSMPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP  120

Query  121  ALDAKHRDAARASDRLPHNDRNGEWWHSS  149
            ALDAKHRDAARASDRLPHNDRNGEWWHSS
Sbjct  121  ALDAKHRDAARASDRLPHNDRNGEWWHSS  149


>gi|289445501|ref|ZP_06435245.1| membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289418459|gb|EFD15660.1| membrane protein [Mycobacterium tuberculosis CPHL_A]
Length=149

 Score =  284 bits (726),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 147/149 (99%), Positives = 149/149 (100%), Gaps = 0/149 (0%)

Query  1    VQAANRRSADTICGVTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPA  60
            +QAANRRSADTICGVTAPAPLP+PRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPA
Sbjct  1    MQAANRRSADTICGVTAPAPLPMPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPA  60

Query  61   TTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP  120
            TTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP
Sbjct  61   TTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP  120

Query  121  ALDAKHRDAARASDRLPHNDRNGEWWHSS  149
            ALDAKHRDAARASDRLPHNDRNGEWWHSS
Sbjct  121  ALDAKHRDAARASDRLPHNDRNGEWWHSS  149


>gi|15843532|ref|NP_338569.1| hypothetical protein MT4018 [Mycobacterium tuberculosis CDC1551]
 gi|254366440|ref|ZP_04982484.1| hypothetical membrane protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|13883908|gb|AAK48383.1| hypothetical protein MT4018 [Mycobacterium tuberculosis CDC1551]
 gi|134151952|gb|EBA43997.1| hypothetical membrane protein [Mycobacterium tuberculosis str. 
Haarlem]
Length=149

 Score =  283 bits (725),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 147/149 (99%), Positives = 148/149 (99%), Gaps = 0/149 (0%)

Query  1    VQAANRRSADTICGVTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPA  60
            +QAANRRSADTICGVTAPAPLPIPRTRSWPAIVVA IAAVVAVAALIVALTNARPAATPA
Sbjct  1    MQAANRRSADTICGVTAPAPLPIPRTRSWPAIVVATIAAVVAVAALIVALTNARPAATPA  60

Query  61   TTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP  120
            TTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP
Sbjct  61   TTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP  120

Query  121  ALDAKHRDAARASDRLPHNDRNGEWWHSS  149
            ALDAKHRDAARASDRLPHNDRNGEWWHSS
Sbjct  121  ALDAKHRDAARASDRLPHNDRNGEWWHSS  149


>gi|31795074|ref|NP_857567.1| hypothetical protein Mb3931c [Mycobacterium bovis AF2122/97]
 gi|31620672|emb|CAD96117.1| POSSIBLE MEMBRANE PROTEIN [Mycobacterium bovis AF2122/97]
Length=149

 Score =  281 bits (720),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 147/149 (99%), Positives = 148/149 (99%), Gaps = 0/149 (0%)

Query  1    VQAANRRSADTICGVTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPA  60
            +QAANRRSADTICGVTAPAP PIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPA
Sbjct  1    MQAANRRSADTICGVTAPAPWPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPA  60

Query  61   TTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP  120
            TTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP
Sbjct  61   TTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP  120

Query  121  ALDAKHRDAARASDRLPHNDRNGEWWHSS  149
            ALDAKHRDAARASDRLPHNDRNGEWWHSS
Sbjct  121  ALDAKHRDAARASDRLPHNDRNGEWWHSS  149


>gi|308371545|ref|ZP_07667199.1| membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|308336353|gb|EFP25204.1| membrane protein [Mycobacterium tuberculosis SUMu004]
Length=135

 Score =  256 bits (655),  Expect = 5e-67, Method: Compositional matrix adjust.
 Identities = 134/135 (99%), Positives = 135/135 (100%), Gaps = 0/135 (0%)

Query  15   VTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPATTSVPTYTAAQTAA  74
            +TAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPATTSVPTYTAAQTAA
Sbjct  1    MTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPATTSVPTYTAAQTAA  60

Query  75   AQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADPALDAKHRDAARASD  134
            AQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADPALDAKHRDAARASD
Sbjct  61   AQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADPALDAKHRDAARASD  120

Query  135  RLPHNDRNGEWWHSS  149
            RLPHNDRNGEWWHSS
Sbjct  121  RLPHNDRNGEWWHSS  135


>gi|121639812|ref|YP_980036.1| hypothetical protein BCG_3958c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224992307|ref|YP_002646997.1| hypothetical protein JTY_3960 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|121495460|emb|CAL73948.1| Possible membrane protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224775423|dbj|BAH28229.1| hypothetical protein JTY_3960 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341603833|emb|CCC66515.1| possible membrane protein [Mycobacterium bovis BCG str. Moreau 
RDJ]
Length=131

 Score =  239 bits (609),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 129/131 (99%), Positives = 130/131 (99%), Gaps = 0/131 (0%)

Query  1    VQAANRRSADTICGVTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPA  60
            +QAANRRSADTICGVTAPAP PIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPA
Sbjct  1    MQAANRRSADTICGVTAPAPWPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPA  60

Query  61   TTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP  120
            TTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP
Sbjct  61   TTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADP  120

Query  121  ALDAKHRDAAR  131
            ALDAKHRDAAR
Sbjct  121  ALDAKHRDAAR  131


>gi|167969436|ref|ZP_02551713.1| hypothetical membrane protein [Mycobacterium tuberculosis H37Ra]
 gi|254548904|ref|ZP_05139351.1| hypothetical protein Mtube_00305 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|294995584|ref|ZP_06801275.1| hypothetical protein Mtub2_14032 [Mycobacterium tuberculosis 
210]
 gi|297636587|ref|ZP_06954367.1| hypothetical protein MtubK4_20780 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297733582|ref|ZP_06962700.1| hypothetical protein MtubKR_20925 [Mycobacterium tuberculosis 
KZN R506]
 gi|313660913|ref|ZP_07817793.1| hypothetical protein MtubKV_20920 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339296707|gb|AEJ48818.1| membrane protein [Mycobacterium tuberculosis CCDC5079]
 gi|339300299|gb|AEJ52409.1| membrane protein [Mycobacterium tuberculosis CCDC5180]
Length=117

 Score =  222 bits (566),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 116/117 (99%), Positives = 117/117 (100%), Gaps = 0/117 (0%)

Query  33   VVAAIAAVVAVAALIVALTNARPAATPATTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPV  92
            +VAAIAAVVAVAALIVALTNARPAATPATTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPV
Sbjct  1    MVAAIAAVVAVAALIVALTNARPAATPATTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPV  60

Query  93   DTNGSDKALARITLTNAAAILDNAAADPALDAKHRDAARASDRLPHNDRNGEWWHSS  149
            DTNGSDKALARITLTNAAAILDNAAADPALDAKHRDAARASDRLPHNDRNGEWWHSS
Sbjct  61   DTNGSDKALARITLTNAAAILDNAAADPALDAKHRDAARASDRLPHNDRNGEWWHSS  117


>gi|254233386|ref|ZP_04926712.1| hypothetical protein TBCG_03828 [Mycobacterium tuberculosis C]
 gi|124603179|gb|EAY61454.1| hypothetical protein TBCG_03828 [Mycobacterium tuberculosis C]
 gi|323717317|gb|EGB26522.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
Length=117

 Score =  221 bits (563),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 115/117 (99%), Positives = 116/117 (99%), Gaps = 0/117 (0%)

Query  33   VVAAIAAVVAVAALIVALTNARPAATPATTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPV  92
            +VA IAAVVAVAALIVALTNARPAATPATTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPV
Sbjct  1    MVATIAAVVAVAALIVALTNARPAATPATTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPV  60

Query  93   DTNGSDKALARITLTNAAAILDNAAADPALDAKHRDAARASDRLPHNDRNGEWWHSS  149
            DTNGSDKALARITLTNAAAILDNAAADPALDAKHRDAARASDRLPHNDRNGEWWHSS
Sbjct  61   DTNGSDKALARITLTNAAAILDNAAADPALDAKHRDAARASDRLPHNDRNGEWWHSS  117


>gi|340628872|ref|YP_004747324.1| hypothetical protein MCAN_39221 [Mycobacterium canettii CIPT 
140010059]
 gi|340007062|emb|CCC46253.1| hypothetical membrane protein [Mycobacterium canettii CIPT 140010059]
Length=160

 Score =  198 bits (503),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 130/139 (94%), Positives = 134/139 (97%), Gaps = 0/139 (0%)

Query  11   TICGVTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPATTSVPTYTAA  70
            TIC VTAPAPLP+PRTRSWPAI VA+IAAVVAVAALIVALTN+RPAATPATTS PTYTAA
Sbjct  16   TICDVTAPAPLPMPRTRSWPAITVASIAAVVAVAALIVALTNSRPAATPATTSPPTYTAA  75

Query  71   QTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADPALDAKHRDAA  130
            + AAAQRQLCDTYKLVAHAV VDTNGSDKALARITLTNAAAILDNAAADPALDAKHRDAA
Sbjct  76   EIAAAQRQLCDTYKLVAHAVQVDTNGSDKALARITLTNAAAILDNAAADPALDAKHRDAA  135

Query  131  RASDRLPHNDRNGEWWHSS  149
            RASDRLPHNDRNGEWWHSS
Sbjct  136  RASDRLPHNDRNGEWWHSS  154


>gi|340628871|ref|YP_004747323.1| hypothetical protein MCAN_39211 [Mycobacterium canettii CIPT 
140010059]
 gi|340007061|emb|CCC46252.1| hypothetical membrane protein [Mycobacterium canettii CIPT 140010059]
Length=169

 Score =  111 bits (277),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 98/121 (81%), Positives = 109/121 (91%), Gaps = 0/121 (0%)

Query  11   TICGVTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPATTSVPTYTAA  70
            TIC VTAPAP P+PRTRSWPAI VA+IAAVVAVAALIVALTN+RPAATPATTSVPTYTAA
Sbjct  5    TICDVTAPAPAPMPRTRSWPAITVASIAAVVAVAALIVALTNSRPAATPATTSVPTYTAA  64

Query  71   QTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADPALDAKHRDAA  130
            +TAAAQRQLCDTY+L A AV VDTNG+D AL RI  +NAAA+LD+AAAD ALDA+H+ AA
Sbjct  65   ETAAAQRQLCDTYRLAARAVQVDTNGNDLALGRIATSNAAAMLDDAAADQALDAEHQGAA  124

Query  131  R  131
            R
Sbjct  125  R  125


>gi|183983062|ref|YP_001851353.1| hypothetical protein MMAR_3063 [Mycobacterium marinum M]
 gi|183176388|gb|ACC41498.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=180

 Score = 97.4 bits (241),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 59/120 (50%), Positives = 76/120 (64%), Gaps = 7/120 (5%)

Query  20   PLPIPRTRSWPAI---VVAAIAAVVAVAALIVALT---NARPAATPATTSVPTYTAAQTA  73
            P P+   R+WP +   ++A +  V+  AAL+VALT   NA  AA P TT+ PTYTA + A
Sbjct  17   PQPVASPRTWPLVALAIIAIVGVVLGAAALVVALTHPGNAGSAAAPTTTASPTYTAEEIA  76

Query  74   AAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAA-ADPALDAKHRDAARA  132
            AA ++LCD YKL A +V +DTNG D ALAR+T  N A +L+ A    PAL    RDAA A
Sbjct  77   AAHQKLCDVYKLAARSVQIDTNGGDPALARVTGVNGAVMLEQALRTAPALAPDERDAAFA  136


>gi|289441342|ref|ZP_06431086.1| possible membrane protein [Mycobacterium tuberculosis T46]
 gi|289414261|gb|EFD11501.1| possible membrane protein [Mycobacterium tuberculosis T46]
Length=141

 Score = 87.8 bits (216),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 56/74 (76%), Positives = 61/74 (83%), Gaps = 3/74 (4%)

Query  51   TNARPAATPATTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAA  110
            TNARPAATP   SVPTYTAA+TAAAQRQLCDTYKLVA AV  DTNG++ A ARI LTNAA
Sbjct  19   TNARPAATP---SVPTYTAAETAAAQRQLCDTYKLVARAVHFDTNGNNPAFARIALTNAA  75

Query  111  AILDNAAADPALDA  124
            A+LD+   DPALD 
Sbjct  76   AMLDSVETDPALDG  89


>gi|118617823|ref|YP_906155.1| hypothetical protein MUL_2309 [Mycobacterium ulcerans Agy99]
 gi|118569933|gb|ABL04684.1| conserved hypothetical membrane protein [Mycobacterium ulcerans 
Agy99]
Length=169

 Score = 84.3 bits (207),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 51/119 (43%), Positives = 73/119 (62%), Gaps = 7/119 (5%)

Query  16   TAPAPLPIPRTRSWPAI---VVAAIAAVVAVAALIVALT---NARPAATPATTSVPTYTA  69
            T  +P P+   R+WP +   ++A +  V+  AAL+VALT   NA  AA P TT+ PTYTA
Sbjct  3    TELSPQPVASPRTWPLVALAIIAIVGVVLGAAALVVALTRPGNAGSAAAPTTTASPTYTA  62

Query  70   AQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAA-ADPALDAKHR  127
             + AAA ++LC+ YKL A  V + T+G+++ALA   + N A +L  A  A PAL +  R
Sbjct  63   EEIAAAHQKLCEVYKLAAREVQIQTHGNNQALAVAAVVNGALMLQQAVDASPALTSSDR  121


>gi|183983064|ref|YP_001851355.1| hypothetical protein MMAR_3065 [Mycobacterium marinum M]
 gi|183176390|gb|ACC41500.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=179

 Score = 81.6 bits (200),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 54/116 (47%), Positives = 68/116 (59%), Gaps = 7/116 (6%)

Query  24   PRTRSWPAI---VVAAIAAVVAVAALIVAL---TNARPAATPATTSVPTYTAAQTAAAQR  77
            PR  +WP +   + A +  V+   ALIVAL   TN+  A+T  TT+ P+YTA QTAAA R
Sbjct  21   PRPSAWPLVALAITAIVGVVLGTTALIVALKDPTNSGSASTSPTTAAPSYTATQTAAAHR  80

Query  78   QLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILD-NAAADPALDAKHRDAARA  132
            +LCDTYKL A AV + TNG   ALA +   N A +L     A PAL +  R  A A
Sbjct  81   KLCDTYKLAARAVQIQTNGDSPALAGVAAVNGAIMLQATVNATPALASADRKTALA  136


>gi|118617821|ref|YP_906153.1| hypothetical protein MUL_2307 [Mycobacterium ulcerans Agy99]
 gi|118569931|gb|ABL04682.1| conserved hypothetical membrane protein [Mycobacterium ulcerans 
Agy99]
Length=170

 Score = 80.1 bits (196),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 53/121 (44%), Positives = 70/121 (58%), Gaps = 7/121 (5%)

Query  19   APLPIPRTRSWPAIVVAAIAAVVAVAALIVALT------NARPAATPATTSVPTYTAAQT  72
            +P P+   R+WP + +A IA V  V   +  +       NA  AA P TT+ PTYTA + 
Sbjct  6    SPQPVASPRTWPLVALAIIAIVGVVLGAVALVVALTRPGNAGSAAAPTTTASPTYTAEEI  65

Query  73   AAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAA-ADPALDAKHRDAAR  131
            AAA ++LC+ YKL A +V +DTNG D ALA +T  N A +L+ A    PAL    RDAA 
Sbjct  66   AAAHQKLCEVYKLAARSVQIDTNGGDAALAGVTGVNGAVMLEQALRTAPALAPDERDAAF  125

Query  132  A  132
            A
Sbjct  126  A  126


>gi|41410425|ref|NP_963261.1| hypothetical protein MAP4327c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41399259|gb|AAS06877.1| hypothetical protein MAP_4327c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=181

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 44/76 (58%), Positives = 55/76 (73%), Gaps = 1/76 (1%)

Query  54   RPAA-TPATTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAI  112
            RPA   PA T++P YT ++TAAAQ+ LCDTY+LVA AV  DTN +D+ALARI  TN A +
Sbjct  59   RPATRLPAATTLPKYTLSETAAAQKHLCDTYRLVAQAVATDTNANDRALARIADTNGALL  118

Query  113  LDNAAADPALDAKHRD  128
            L+  A + ALDA  RD
Sbjct  119  LNMPADNLALDADRRD  134


>gi|240168380|ref|ZP_04747039.1| hypothetical protein MkanA1_03657 [Mycobacterium kansasii ATCC 
12478]
Length=114

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 34/45 (76%), Positives = 37/45 (83%), Gaps = 0/45 (0%)

Query  79   LCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADPALD  123
            LCDTYKL A AV VDTNG++ ALARI LTNAAA+LDNA  D ALD
Sbjct  16   LCDTYKLAARAVGVDTNGNNPALARIALTNAAAMLDNADGDLALD  60


>gi|296167165|ref|ZP_06849572.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897487|gb|EFG77086.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=195

 Score = 66.2 bits (160),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 51/119 (43%), Positives = 74/119 (63%), Gaps = 11/119 (9%)

Query  23   IPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPATTS--VPTYTAA------QTAA  74
            + R R+WPAI ++AIAA++AV A+++A+T  RP + P+ +S  +P  T        QTAA
Sbjct  35   VGRPRTWPAIALSAIAALLAVGAMVIAMT--RPTSGPSGSSGALPATTTTVAYTAEQTAA  92

Query  75   AQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAA-ADPALDAKHRDAARA  132
            A ++LCD YKL   AV ++TNG +   A I   N A +L+ A  A+PA+ A  R AA A
Sbjct  93   AHQKLCDAYKLAGRAVQIETNGKNSERAGIATVNGAVMLEEAVNANPAMGAGDRAAALA  151


>gi|296167166|ref|ZP_06849573.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897488|gb|EFG77087.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=94

 Score = 66.2 bits (160),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 39/50 (78%), Gaps = 0/50 (0%)

Query  83   YKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAADPALDAKHRDAARA  132
            Y+L A AV VDT G+DKALARI  TN A +LD AA++PALD KHRDAA A
Sbjct  2    YQLAAKAVQVDTAGTDKALARIATTNGALMLDRAASNPALDCKHRDAAGA  51


>gi|183983072|ref|YP_001851363.1| hypothetical protein MMAR_3073 [Mycobacterium marinum M]
 gi|183176398|gb|ACC41508.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=187

 Score = 57.0 bits (136),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 44/96 (46%), Positives = 66/96 (69%), Gaps = 2/96 (2%)

Query  23   IPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPATTSVPTYTAAQTAAAQRQLCDT  82
            +PR ++WPA+ +AAIA  +A AALIV+L +  P  T +  + PTYT+A++ AA + LC+T
Sbjct  36   VPRPQNWPALTLAAIAVGLAAAALIVSLRH--PTITASAPTPPTYTSAESIAAHQALCET  93

Query  83   YKLVAHAVPVDTNGSDKALARITLTNAAAILDNAAA  118
            YKL A +V ++TNG++ ALA     N A +L+ A A
Sbjct  94   YKLAARSVQIETNGTNPALASAAAANGALMLEQAVA  129


>gi|118462437|ref|YP_884401.1| hypothetical protein MAV_5290 [Mycobacterium avium 104]
 gi|118163724|gb|ABK64621.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=217

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 27/48 (57%), Positives = 35/48 (73%), Gaps = 0/48 (0%)

Query  69   AAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNA  116
            A QTAAA ++LCD+YKL + AV +DTNG + A A I+  NAA IL+ A
Sbjct  110  AEQTAAAHQKLCDSYKLASRAVQIDTNGDNPAFAGISTVNAAVILEQA  157


>gi|41410426|ref|NP_963262.1| hypothetical protein MAP4328c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41399260|gb|AAS06878.1| hypothetical protein MAP_4328c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=188

 Score = 50.4 bits (119),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 29/63 (47%), Positives = 40/63 (64%), Gaps = 1/63 (1%)

Query  71   QTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNAA-ADPALDAKHRDA  129
            QTAAA ++LCDTY+L A AV ++TNG +   A +   N A +L+ A  A+PA+    R A
Sbjct  82   QTAAAHQKLCDTYRLAARAVQIETNGKNSDRANLATVNGAVMLEEAVNANPAIAPGDRAA  141

Query  130  ARA  132
            A A
Sbjct  142  ALA  144


>gi|254551110|ref|ZP_05141557.1| hypothetical protein Mtube_11711 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|294997023|ref|ZP_06802714.1| hypothetical protein Mtub2_21593 [Mycobacterium tuberculosis 
210]
 gi|297731648|ref|ZP_06960766.1| hypothetical protein MtubKR_11191 [Mycobacterium tuberculosis 
KZN R506]
 gi|313658983|ref|ZP_07815863.1| hypothetical protein MtubKV_11206 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339295003|gb|AEJ47114.1| hypothetical protein CCDC5079_1924 [Mycobacterium tuberculosis 
CCDC5079]
Length=147

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 37/71 (53%), Positives = 46/71 (65%), Gaps = 3/71 (4%)

Query  47   IVALT---NARPAATPATTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALAR  103
            IVALT   N+ PA    TT+ PTYTAA+TAAA ++LC+ YKL A AV + TNG + A A 
Sbjct  17   IVALTRPTNSGPATAAGTTAEPTYTAAETAAAHQKLCEVYKLAARAVQIATNGDNPAFAN  76

Query  104  ITLTNAAAILD  114
            I   N A +L 
Sbjct  77   IATVNGAVMLQ  87


>gi|289447702|ref|ZP_06437446.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289420660|gb|EFD17861.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=147

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 36/69 (53%), Positives = 45/69 (66%), Gaps = 3/69 (4%)

Query  47   IVALT---NARPAATPATTSVPTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALAR  103
            IVALT   N+ PA    TT+ PTYTAA+TAAA ++LC+ YKL A AV + TNG + A A 
Sbjct  17   IVALTRPTNSGPATAAGTTAEPTYTAAETAAAHQKLCEVYKLAARAVQIATNGDNPAFAN  76

Query  104  ITLTNAAAI  112
            I   N A +
Sbjct  77   IATVNGAVM  85


>gi|240173487|ref|ZP_04752145.1| hypothetical protein MkanA1_29521 [Mycobacterium kansasii ATCC 
12478]
Length=116

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 29/52 (56%), Positives = 37/52 (72%), Gaps = 0/52 (0%)

Query  65   PTYTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKALARITLTNAAAILDNA  116
            PTYTAA+T AA ++LCD YKL A AV ++TNG D A+A I+  N A +L  A
Sbjct  4    PTYTAAETTAAHQKLCDVYKLAARAVQIETNGDDPAMANISTVNGAQMLQQA  55


>gi|167967775|ref|ZP_02550052.1| hypothetical protein MtubH3_06967 [Mycobacterium tuberculosis 
H37Ra]
 gi|297634660|ref|ZP_06952440.1| hypothetical protein MtubK4_11086 [Mycobacterium tuberculosis 
KZN 4207]
 gi|306789217|ref|ZP_07427539.1| hypothetical protein TMDG_00561 [Mycobacterium tuberculosis SUMu004]
 25 more sequence titles
 gi|306808386|ref|ZP_07445054.1| hypothetical protein TMGG_00637 [Mycobacterium tuberculosis SUMu007]
 gi|308232023|ref|ZP_07663971.1| hypothetical protein TMAG_02265 [Mycobacterium tuberculosis SUMu001]
 gi|308369616|ref|ZP_07418444.2| hypothetical protein TMBG_00629 [Mycobacterium tuberculosis SUMu002]
 gi|308370909|ref|ZP_07667041.1| hypothetical protein TMCG_00178 [Mycobacterium tuberculosis SUMu003]
 gi|308373320|ref|ZP_07431851.2| hypothetical protein TMEG_02447 [Mycobacterium tuberculosis SUMu005]
 gi|308374487|ref|ZP_07667794.1| hypothetical protein TMFG_01039 [Mycobacterium tuberculosis SUMu006]
 gi|308376905|ref|ZP_07668374.1| hypothetical protein TMHG_01269 [Mycobacterium tuberculosis SUMu008]
 gi|308377911|ref|ZP_07668618.1| hypothetical protein TMIG_00747 [Mycobacterium tuberculosis SUMu009]
 gi|308379114|ref|ZP_07668897.1| hypothetical protein TMJG_00340 [Mycobacterium tuberculosis SUMu010]
 gi|308380265|ref|ZP_07489313.2| hypothetical protein TMKG_00341 [Mycobacterium tuberculosis SUMu011]
 gi|308403487|ref|ZP_07669428.1| hypothetical protein TMLG_03574 [Mycobacterium tuberculosis SUMu012]
 gi|308215275|gb|EFO74674.1| hypothetical protein TMAG_02265 [Mycobacterium tuberculosis SUMu001]
 gi|308327013|gb|EFP15864.1| hypothetical protein TMBG_00629 [Mycobacterium tuberculosis SUMu002]
 gi|308330448|gb|EFP19299.1| hypothetical protein TMCG_00178 [Mycobacterium tuberculosis SUMu003]
 gi|308334281|gb|EFP23132.1| hypothetical protein TMDG_00561 [Mycobacterium tuberculosis SUMu004]
 gi|308338082|gb|EFP26933.1| hypothetical protein TMEG_02447 [Mycobacterium tuberculosis SUMu005]
 gi|308341775|gb|EFP30626.1| hypothetical protein TMFG_01039 [Mycobacterium tuberculosis SUMu006]
 gi|308345259|gb|EFP34110.1| hypothetical protein TMGG_00637 [Mycobacterium tuberculosis SUMu007]
 gi|308349560|gb|EFP38411.1| hypothetical protein TMHG_01269 [Mycobacterium tuberculosis SUMu008]
 gi|308354190|gb|EFP43041.1| hypothetical protein TMIG_00747 [Mycobacterium tuberculosis SUMu009]
 gi|308358143|gb|EFP46994.1| hypothetical protein TMJG_00340 [Mycobacterium tuberculosis SUMu010]
 gi|308362070|gb|EFP50921.1| hypothetical protein TMKG_00341 [Mycobacterium tuberculosis SUMu011]
 gi|308365708|gb|EFP54559.1| hypothetical protein TMLG_03574 [Mycobacterium tuberculosis SUMu012]
 gi|326903696|gb|EGE50629.1| hypothetical protein TBPG_01576 [Mycobacterium tuberculosis W-148]
 gi|339298627|gb|AEJ50737.1| hypothetical protein CCDC5180_1900 [Mycobacterium tuberculosis 
CCDC5180]
Length=150

 Score = 38.1 bits (87),  Expect = 0.45, Method: Compositional matrix adjust.
 Identities = 36/73 (50%), Positives = 45/73 (62%), Gaps = 7/73 (9%)

Query  47   IVALTNARPA-ATPATTSVPT----YTAAQTAAAQRQLCDTYKLVAHAVPVDTNGSDKAL  101
            IVALT  RP  + PAT +  T    YTAA+TAAA ++LC+ YKL A AV + TNG + A 
Sbjct  20   IVALT--RPTNSGPATAAGTTAEPTYTAAETAAAHQKLCEVYKLAARAVQIATNGDNPAF  77

Query  102  ARITLTNAAAILD  114
            A I   N A +L 
Sbjct  78   ANIATVNGAVMLQ  90


>gi|306972853|ref|ZP_07485514.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu010]
 gi|307080559|ref|ZP_07489729.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu011]
 gi|308232144|ref|ZP_07415080.2| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu001]
 23 more sequence titles
 gi|308369729|ref|ZP_07418853.2| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu002]
 gi|308371026|ref|ZP_07423590.2| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu003]
 gi|308372244|ref|ZP_07427949.2| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu004]
 gi|308373423|ref|ZP_07432256.2| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu005]
 gi|308374590|ref|ZP_07436650.2| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu006]
 gi|308375901|ref|ZP_07445462.2| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu007]
 gi|308377021|ref|ZP_07440892.2| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu008]
 gi|308378025|ref|ZP_07481287.2| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu009]
 gi|308405124|ref|ZP_07494269.2| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu012]
 gi|313659406|ref|ZP_07816286.1| hypothetical protein MtubKV_13339 [Mycobacterium tuberculosis 
KZN V2475]
 gi|308214904|gb|EFO74303.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu001]
 gi|308326664|gb|EFP15515.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu002]
 gi|308330091|gb|EFP18942.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu003]
 gi|308333931|gb|EFP22782.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu004]
 gi|308337734|gb|EFP26585.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu005]
 gi|308341415|gb|EFP30266.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu006]
 gi|308344900|gb|EFP33751.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu007]
 gi|308349211|gb|EFP38062.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu008]
 gi|308353833|gb|EFP42684.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu009]
 gi|308357782|gb|EFP46633.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu010]
 gi|308361727|gb|EFP50578.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu011]
 gi|308365336|gb|EFP54187.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
SUMu012]
 gi|323718979|gb|EGB28129.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
CDC1551A]
Length=154

 Score = 35.0 bits (79),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 34/114 (30%), Positives = 59/114 (52%), Gaps = 15/114 (13%)

Query  34   VAAIA-AVVAVAALIVALTNARPAATPATT-SVPTYTAAQTAAAQRQLCDTYKLVAHAVP  91
            +AA+A AVV++   IV   + +P   P+   S PT+T+ Q + A+  +C  +++V  A  
Sbjct  1    MAALALAVVSLGVGIVGWFHRQPHDKPSPAPSAPTFTSQQISDAKENVCAAHRIVRQAAV  60

Query  92   VDTNGSDK------------ALARITLTNAA-AILDNAAADPALDAKHRDAARA  132
            ++TN ++             A AR+ L +    +L    A+PA  A+ RDA R+
Sbjct  61   LNTNQANPVPGDPTGDLAVAANARLALYSGGDYLLRRLTAEPATPAELRDAVRS  114


>gi|254232608|ref|ZP_04925935.1| hypothetical protein TBCG_02415 [Mycobacterium tuberculosis C]
 gi|124601667|gb|EAY60677.1| hypothetical protein TBCG_02415 [Mycobacterium tuberculosis C]
Length=215

 Score = 33.9 bits (76),  Expect = 8.3, Method: Compositional matrix adjust.
 Identities = 39/133 (30%), Positives = 66/133 (50%), Gaps = 14/133 (10%)

Query  14   GVTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPATT-SVPTYTAAQT  72
            G + PAP   PR+    ++V A   AVV++   IV   + +P   P+   S PT+T+ Q 
Sbjct  43   GSSRPAPSTTPRSPGRWSLVAALALAVVSLGVGIVGWFHRQPHDKPSPAPSAPTFTSQQI  102

Query  73   AAAQRQLCDTYKLVAHAVPVDTNGSDK------------ALARITLTNAA-AILDNAAAD  119
            + A+  +C  +++V  A  ++TN ++             A AR+ L +    +L    A+
Sbjct  103  SDAKENVCAAHRIVRQAAVLNTNQANPVPGDPTGDLAVAANARLALYSGGDYLLRRLTAE  162

Query  120  PALDAKHRDAARA  132
            PA  A+ RDA R+
Sbjct  163  PATPAELRDAVRS  175


>gi|15841999|ref|NP_337036.1| hypothetical protein MT2548 [Mycobacterium tuberculosis CDC1551]
 gi|13882274|gb|AAK46850.1| hypothetical protein MT2548 [Mycobacterium tuberculosis CDC1551]
Length=225

 Score = 33.9 bits (76),  Expect = 8.3, Method: Compositional matrix adjust.
 Identities = 39/133 (30%), Positives = 66/133 (50%), Gaps = 14/133 (10%)

Query  14   GVTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPATT-SVPTYTAAQT  72
            G + PAP   PR+    ++V A   AVV++   IV   + +P   P+   S PT+T+ Q 
Sbjct  53   GSSRPAPSTTPRSPGRWSLVAALALAVVSLGVGIVGWFHRQPHDKPSPAPSAPTFTSQQI  112

Query  73   AAAQRQLCDTYKLVAHAVPVDTNGSDK------------ALARITLTNAA-AILDNAAAD  119
            + A+  +C  +++V  A  ++TN ++             A AR+ L +    +L    A+
Sbjct  113  SDAKENVCAAHRIVRQAAVLNTNQANPVPGDPTGDLAVAANARLALYSGGDYLLRRLTAE  172

Query  120  PALDAKHRDAARA  132
            PA  A+ RDA R+
Sbjct  173  PATPAELRDAVRS  185


>gi|339295361|gb|AEJ47472.1| hypothetical alanine and proline rich membrane protein [Mycobacterium 
tuberculosis CCDC5079]
Length=254

 Score = 33.9 bits (76),  Expect = 9.2, Method: Compositional matrix adjust.
 Identities = 39/133 (30%), Positives = 66/133 (50%), Gaps = 14/133 (10%)

Query  14   GVTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPATT-SVPTYTAAQT  72
            G + PAP   PR+    ++V A   AVV++   IV   + +P   P+   S PT+T+ Q 
Sbjct  82   GSSRPAPSTTPRSPGRWSLVAALALAVVSLGVGIVGWFHRQPHDKPSPAPSAPTFTSQQI  141

Query  73   AAAQRQLCDTYKLVAHAVPVDTNGSDK------------ALARITLTNAA-AILDNAAAD  119
            + A+  +C  +++V  A  ++TN ++             A AR+ L +    +L    A+
Sbjct  142  SDAKENVCAAHRIVRQAAVLNTNQANPVPGDPTGDLAVAANARLALYSGGDYLLRRLTAE  201

Query  120  PALDAKHRDAARA  132
            PA  A+ RDA R+
Sbjct  202  PATPAELRDAVRS  214


>gi|15609610|ref|NP_216989.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
H37Rv]
 gi|31793654|ref|NP_856147.1| alanine and proline rich membrane protein [Mycobacterium bovis 
AF2122/97]
 gi|121638356|ref|YP_978580.1| putative alanine and proline rich membrane protein [Mycobacterium 
bovis BCG str. Pasteur 1173P2]
 45 more sequence titles
 gi|148662308|ref|YP_001283831.1| hypothetical protein MRA_2499 [Mycobacterium tuberculosis H37Ra]
 gi|148823672|ref|YP_001288426.1| hypothetical protein TBFG_12497 [Mycobacterium tuberculosis F11]
 gi|167969799|ref|ZP_02552076.1| hypothetical alanine and proline rich membrane protein [Mycobacterium 
tuberculosis H37Ra]
 gi|224990850|ref|YP_002645537.1| putative alanine and proline rich membrane protein [Mycobacterium 
bovis BCG str. Tokyo 172]
 gi|253798448|ref|YP_003031449.1| hypothetical protein TBMG_01500 [Mycobacterium tuberculosis KZN 
1435]
 gi|254551521|ref|ZP_05141968.1| hypothetical protein Mtube_13844 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289443999|ref|ZP_06433743.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
T46]
 gi|289448116|ref|ZP_06437860.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
CPHL_A]
 gi|289553736|ref|ZP_06442946.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
KZN 605]
 gi|289570628|ref|ZP_06450855.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
T17]
 gi|289575167|ref|ZP_06455394.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
K85]
 gi|289746255|ref|ZP_06505633.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
02_1987]
 gi|289751079|ref|ZP_06510457.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
T92]
 gi|289754582|ref|ZP_06513960.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
EAS054]
 gi|289758604|ref|ZP_06517982.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
T85]
 gi|289762642|ref|ZP_06522020.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|294994419|ref|ZP_06800110.1| hypothetical protein Mtub2_07857 [Mycobacterium tuberculosis 
210]
 gi|297635079|ref|ZP_06952859.1| hypothetical protein MtubK4_13199 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297732070|ref|ZP_06961188.1| hypothetical protein MtubKR_13319 [Mycobacterium tuberculosis 
KZN R506]
 gi|298525950|ref|ZP_07013359.1| hypothetical alanine and proline rich membrane protein [Mycobacterium 
tuberculosis 94_M4241A]
 gi|339632501|ref|YP_004724143.1| hypothetical protein MAF_24900 [Mycobacterium africanum GM041182]
 gi|340627487|ref|YP_004745939.1| putative alanine and proline rich membrane protein [Mycobacterium 
canettii CIPT 140010059]
 gi|2791513|emb|CAA16050.1| POSSIBLE ALANINE AND PROLINE RICH MEMBRANE PROTEIN [Mycobacterium 
tuberculosis H37Rv]
 gi|31619247|emb|CAD97361.1| POSSIBLE ALANINE AND PROLINE RICH MEMBRANE PROTEIN [Mycobacterium 
bovis AF2122/97]
 gi|121494004|emb|CAL72481.1| Possible alanine and proline rich membrane protein [Mycobacterium 
bovis BCG str. Pasteur 1173P2]
 gi|148506460|gb|ABQ74269.1| hypothetical protein MRA_2499 [Mycobacterium tuberculosis H37Ra]
 gi|148722199|gb|ABR06824.1| hypothetical alanine and proline rich membrane protein [Mycobacterium 
tuberculosis F11]
 gi|224773963|dbj|BAH26769.1| putative alanine and proline rich membrane protein [Mycobacterium 
bovis BCG str. Tokyo 172]
 gi|253319951|gb|ACT24554.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
KZN 1435]
 gi|289416918|gb|EFD14158.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
T46]
 gi|289421074|gb|EFD18275.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
CPHL_A]
 gi|289438368|gb|EFD20861.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
KZN 605]
 gi|289539598|gb|EFD44176.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
K85]
 gi|289544382|gb|EFD48030.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
T17]
 gi|289686783|gb|EFD54271.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
02_1987]
 gi|289691666|gb|EFD59095.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
T92]
 gi|289695169|gb|EFD62598.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
EAS054]
 gi|289710148|gb|EFD74164.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289714168|gb|EFD78180.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
T85]
 gi|298495744|gb|EFI31038.1| hypothetical alanine and proline rich membrane protein [Mycobacterium 
tuberculosis 94_M4241A]
 gi|326904087|gb|EGE51020.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
W-148]
 gi|328458216|gb|AEB03639.1| alanine and proline rich membrane protein [Mycobacterium tuberculosis 
KZN 4207]
 gi|339331857|emb|CCC27560.1| putative alanine and proline rich membrane protein [Mycobacterium 
africanum GM041182]
 gi|340005677|emb|CCC44843.1| putative alanine and proline rich membrane protein [Mycobacterium 
canettii CIPT 140010059]
 gi|341602394|emb|CCC65070.1| possible alanine and proline rich membrane protein [Mycobacterium 
bovis BCG str. Moreau RDJ]
Length=238

 Score = 33.9 bits (76),  Expect = 9.2, Method: Compositional matrix adjust.
 Identities = 39/133 (30%), Positives = 66/133 (50%), Gaps = 14/133 (10%)

Query  14   GVTAPAPLPIPRTRSWPAIVVAAIAAVVAVAALIVALTNARPAATPATT-SVPTYTAAQT  72
            G + PAP   PR+    ++V A   AVV++   IV   + +P   P+   S PT+T+ Q 
Sbjct  66   GSSRPAPSTTPRSPGRWSLVAALALAVVSLGVGIVGWFHRQPHDKPSPAPSAPTFTSQQI  125

Query  73   AAAQRQLCDTYKLVAHAVPVDTNGSDK------------ALARITLTNAA-AILDNAAAD  119
            + A+  +C  +++V  A  ++TN ++             A AR+ L +    +L    A+
Sbjct  126  SDAKENVCAAHRIVRQAAVLNTNQANPVPGDPTGDLAVAANARLALYSGGDYLLRRLTAE  185

Query  120  PALDAKHRDAARA  132
            PA  A+ RDA R+
Sbjct  186  PATPAELRDAVRS  198



Lambda     K      H
   0.316    0.123    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130023393564


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40