BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3902c
Length=176
Score E
Sequences producing significant alignments: (Bits) Value
gi|15611038|ref|NP_218419.1| hypothetical protein Rv3902c [Mycob... 358 2e-97
gi|289445502|ref|ZP_06435246.1| conserved hypothetical protein [... 355 2e-96
gi|339296708|gb|AEJ48819.1| hypothetical protein CCDC5079_3630 [... 350 4e-95
gi|41407919|ref|NP_960755.1| hypothetical protein MAP1821c [Myco... 124 5e-27
gi|296395222|ref|YP_003660106.1| hypothetical protein Srot_2844 ... 100 7e-20
gi|296395221|ref|YP_003660105.1| hypothetical protein Srot_2843 ... 82.4 3e-14
gi|118465648|ref|YP_881617.1| hypothetical protein MAV_2421 [Myc... 78.2 4e-13
gi|336462059|gb|EGO40905.1| hypothetical protein MAPs_24710 [Myc... 75.5 3e-12
gi|317507986|ref|ZP_07965678.1| hypothetical protein HMPREF9336_... 65.1 4e-09
gi|108802427|ref|YP_642623.1| hypothetical protein Mmcs_5467 [My... 53.9 1e-05
gi|296393019|ref|YP_003657903.1| hypothetical protein Srot_0590 ... 52.0 3e-05
gi|269794792|ref|YP_003314247.1| hypothetical protein Sked_14770... 38.1 0.56
gi|116787167|gb|ABK24396.1| unknown [Picea sitchensis] 36.2 1.9
gi|254431614|ref|ZP_05045317.1| hypothetical protein CPCC7001_15... 35.4 3.2
gi|145494478|ref|XP_001433233.1| hypothetical protein [Parameciu... 34.7 4.9
gi|323358289|ref|YP_004224685.1| hypothetical protein MTES_1841 ... 34.3 6.4
gi|183219576|ref|YP_001837572.1| putative potassium ion transpor... 34.3 8.1
>gi|15611038|ref|NP_218419.1| hypothetical protein Rv3902c [Mycobacterium tuberculosis H37Rv]
gi|15843534|ref|NP_338571.1| hypothetical protein MT4020 [Mycobacterium tuberculosis CDC1551]
gi|31795075|ref|NP_857568.1| hypothetical protein Mb3932c [Mycobacterium bovis AF2122/97]
72 more sequence titles
Length=176
Score = 358 bits (918), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 175/176 (99%), Positives = 176/176 (100%), Gaps = 0/176 (0%)
Query 1 VTIGVDLSTDLQDWIRLSGMNMIQGSETNDGRTILWNKGGEVRYFIDRLAGWYVITSSDR 60
+TIGVDLSTDLQDWIRLSGMNMIQGSETNDGRTILWNKGGEVRYFIDRLAGWYVITSSDR
Sbjct 1 MTIGVDLSTDLQDWIRLSGMNMIQGSETNDGRTILWNKGGEVRYFIDRLAGWYVITSSDR 60
Query 61 MSREGYEFAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIGTMTFAGR 120
MSREGYEFAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIGTMTFAGR
Sbjct 61 MSREGYEFAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIGTMTFAGR 120
Query 121 QRDTLIDSSGTVVAITAADRLVELSHYLDVSVNVIKDSFLDSEGKPLFTLWKDYKG 176
QRDTLIDSSGTVVAITAADRLVELSHYLDVSVNVIKDSFLDSEGKPLFTLWKDYKG
Sbjct 121 QRDTLIDSSGTVVAITAADRLVELSHYLDVSVNVIKDSFLDSEGKPLFTLWKDYKG 176
>gi|289445502|ref|ZP_06435246.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289418460|gb|EFD15661.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=176
Score = 355 bits (911), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 174/176 (99%), Positives = 175/176 (99%), Gaps = 0/176 (0%)
Query 1 VTIGVDLSTDLQDWIRLSGMNMIQGSETNDGRTILWNKGGEVRYFIDRLAGWYVITSSDR 60
+TIGVDLSTDLQDWIRLSGMNMIQGSETNDGRTILWNKGGEVRYFIDRLAGWYVITSSDR
Sbjct 1 MTIGVDLSTDLQDWIRLSGMNMIQGSETNDGRTILWNKGGEVRYFIDRLAGWYVITSSDR 60
Query 61 MSREGYEFAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIGTMTFAGR 120
MSREGYEFAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIGTMTFAGR
Sbjct 61 MSREGYEFAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIGTMTFAGR 120
Query 121 QRDTLIDSSGTVVAITAADRLVELSHYLDVSVNVIKDSFLDSEGKPLFTLWKDYKG 176
QRDTLIDSSGTVVAITAADRLVELSHYLDVSVNVIKD FLDSEGKPLFTLWKDYKG
Sbjct 121 QRDTLIDSSGTVVAITAADRLVELSHYLDVSVNVIKDFFLDSEGKPLFTLWKDYKG 176
>gi|339296708|gb|AEJ48819.1| hypothetical protein CCDC5079_3630 [Mycobacterium tuberculosis
CCDC5079]
gi|339300300|gb|AEJ52410.1| hypothetical protein CCDC5180_3573 [Mycobacterium tuberculosis
CCDC5180]
Length=172
Score = 350 bits (899), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 171/172 (99%), Positives = 172/172 (100%), Gaps = 0/172 (0%)
Query 5 VDLSTDLQDWIRLSGMNMIQGSETNDGRTILWNKGGEVRYFIDRLAGWYVITSSDRMSRE 64
+DLSTDLQDWIRLSGMNMIQGSETNDGRTILWNKGGEVRYFIDRLAGWYVITSSDRMSRE
Sbjct 1 MDLSTDLQDWIRLSGMNMIQGSETNDGRTILWNKGGEVRYFIDRLAGWYVITSSDRMSRE 60
Query 65 GYEFAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIGTMTFAGRQRDT 124
GYEFAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIGTMTFAGRQRDT
Sbjct 61 GYEFAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIGTMTFAGRQRDT 120
Query 125 LIDSSGTVVAITAADRLVELSHYLDVSVNVIKDSFLDSEGKPLFTLWKDYKG 176
LIDSSGTVVAITAADRLVELSHYLDVSVNVIKDSFLDSEGKPLFTLWKDYKG
Sbjct 121 LIDSSGTVVAITAADRLVELSHYLDVSVNVIKDSFLDSEGKPLFTLWKDYKG 172
>gi|41407919|ref|NP_960755.1| hypothetical protein MAP1821c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396273|gb|AAS04138.1| hypothetical protein MAP_1821c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=178
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/175 (39%), Positives = 101/175 (58%), Gaps = 7/175 (4%)
Query 1 VTIGVDLSTDLQDWIRLSGMNMIQGSETNDGRTILWNKGGEVRYFIDRLA-GWYVITSSD 59
+T G+ LS L++W +L+ + S T DGR I W+ GE R F+ + GW VIT SD
Sbjct 1 MTSGIQLSQRLEEWAKLADYTLTPSSSTRDGRPIFWSGLGESRLFVGKKPDGWLVITDSD 60
Query 60 RMSREGYEFAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIGTMTFAG 119
RM E + AA S+ IEKYL+G FG +R R LP I P + +++I T + G
Sbjct 61 RMESEWFVLAAPSIDTIEKYLFGKFGMYIRGTRNLPRIGVPVSAGDQHSDFNIETREYEG 120
Query 120 RQRDTLIDSSGTVVAITAADR------LVELSHYLDVSVNVIKDSFLDSEGKPLF 168
+R L+ G+ +A+ +AD+ L +L+ YL+ +++ I+ S LD +GKPLF
Sbjct 121 VERFALVAPDGSAIAVGSADKITATADLKKLALYLNATIDQIEASMLDPDGKPLF 175
>gi|296395222|ref|YP_003660106.1| hypothetical protein Srot_2844 [Segniliparus rotundus DSM 44985]
gi|296182369|gb|ADG99275.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=173
Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/173 (33%), Positives = 99/173 (58%), Gaps = 11/173 (6%)
Query 5 VDLSTDLQDWIRLSGMNMIQGSETNDGRTILWNKGGEVRYFID-RLAGWYVITSSDRMSR 63
+++S +L +W +L ++ +++ G I WN GGE+R +I R GW ++ +DR
Sbjct 4 LEISAELTEWAKLGNWSLTPCNDS--GEAIFWNTGGEIRLYIKAREDGWVFLSRADRAEH 61
Query 64 E-GYEFAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIGTMTFAGRQR 122
E + ++ASM V+E+YL+G+F +R R+L ++ PF+ E++ P Y + + +
Sbjct 62 ERQFLISSASMQVLERYLWGFFAIDIRGVRDLGDLKLPFKLEDIAPGYKL--IEGDSPEE 119
Query 123 DTLIDSSGTVVAITAAD-----RLVELSHYLDVSVNVIKDSFLDSEGKPLFTL 170
L+D +A T D +LV++S YL V + ++ SFL +GKPLF+L
Sbjct 120 RILLDPQQNPIAKTGDDITDIGKLVKVSRYLSVPLEALQASFLSPDGKPLFSL 172
>gi|296395221|ref|YP_003660105.1| hypothetical protein Srot_2843 [Segniliparus rotundus DSM 44985]
gi|296182368|gb|ADG99274.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=173
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/168 (31%), Positives = 81/168 (49%), Gaps = 11/168 (6%)
Query 10 DLQDWIRLSGMNMIQGSETNDGRTILWN-KGGEVRYFIDRLA-GWYVITSSDRMSREGYE 67
DL +W R + + G + W+ GE RY I GW+ + + R E
Sbjct 9 DLIEWARRTSWDFTPSD--GSGEAVFWSVPEGETRYGIKTAPHGWFEVAKTSRDGERHVE 66
Query 68 FAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIG----TMTFAGRQRD 123
F AA+ + +Y +G FG VR++ ELP + P +++ P YS+ + G ++
Sbjct 67 FLAAATDTVARYFWGEFGKDVRNKAELPRLSFPKNEQDISPGYSLSRRGEALELIGPHQN 126
Query 124 TLIDSSGTVVAITAADRLVELSHYLDVSVNVIKDSFLDSEGKPLFTLW 171
L ++ + R V+LSH L+ SV IK SFL+ +G PLF L+
Sbjct 127 ILARGEAGILDVM---RFVQLSHLLNSSVQEIKASFLNPQGGPLFELY 171
>gi|118465648|ref|YP_881617.1| hypothetical protein MAV_2421 [Mycobacterium avium 104]
gi|118166935|gb|ABK67832.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=117
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/114 (39%), Positives = 66/114 (58%), Gaps = 6/114 (5%)
Query 61 MSREGYEFAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIGTMTFAGR 120
M E + AA S+ IEKYL+G FG +RS R LP I P E+ + +I T + G
Sbjct 1 MESERFVLAAPSIDTIEKYLFGKFGMYIRSARNLPRIGVPVSAEDEHSDVNIETREYEGV 60
Query 121 QRDTLIDSSGTVVAITAADR------LVELSHYLDVSVNVIKDSFLDSEGKPLF 168
+R L+ G+ VA+ +AD+ L +L+ YL+ +++ I+ S LD +GKPLF
Sbjct 61 ERFALVAPDGSAVAVGSADKITGTADLKKLALYLNATIDQIEVSVLDPDGKPLF 114
>gi|336462059|gb|EGO40905.1| hypothetical protein MAPs_24710 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=117
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/114 (36%), Positives = 65/114 (58%), Gaps = 6/114 (5%)
Query 61 MSREGYEFAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIGTMTFAGR 120
M E + AA S+ IEKYL+G FG +R R LP I P + +++I T + G
Sbjct 1 MESEWFVLAAPSIDTIEKYLFGKFGMYIRGTRNLPRIGVPVSAGDQHSDFNIETREYEGV 60
Query 121 QRDTLIDSSGTVVAITAADR------LVELSHYLDVSVNVIKDSFLDSEGKPLF 168
+R L+ G+ +A+ +AD+ L +L+ YL+ +++ I+ S LD +GKPLF
Sbjct 61 ERFALVAPDGSAIAVGSADKITATADLKKLALYLNATIDQIEASMLDPDGKPLF 114
>gi|317507986|ref|ZP_07965678.1| hypothetical protein HMPREF9336_02050 [Segniliparus rugosus ATCC
BAA-974]
gi|316253720|gb|EFV13098.1| hypothetical protein HMPREF9336_02050 [Segniliparus rugosus ATCC
BAA-974]
Length=165
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/143 (32%), Positives = 67/143 (47%), Gaps = 20/143 (13%)
Query 33 TILWNKGGEVR-----YFIDRLAGWYVITSSDRMSREGYEFAAASMSVIEKYLYGYFGGS 87
+W + E R F R GW+ + +D +R FA + +E+Y +G+
Sbjct 36 CAIWKEDAEGRTLTSFLFHAREDGWFEV--ADGNARRDL-FATGELEALERYFWGFLAEE 92
Query 88 VRSERELPAIRAPFQPEELMPEYSIGTMTFAGRQRDTLIDSSGTVVAITAADRLVELSHY 147
+R + LP + AP +P P Y I D L+ SG VVA LV LSHY
Sbjct 93 IRKKSGLPELVAPTEP---APGYRI---------EDGLLAPSGAVVARGDGQCLVALSHY 140
Query 148 LDVSVNVIKDSFLDSEGKPLFTL 170
L +++ ++ S L EGKPLF +
Sbjct 141 LAPTLDELEASLLHPEGKPLFAV 163
>gi|108802427|ref|YP_642623.1| hypothetical protein Mmcs_5467 [Mycobacterium sp. MCS]
gi|119855252|ref|YP_935855.1| hypothetical protein Mkms_5866 [Mycobacterium sp. KMS]
gi|108772846|gb|ABG11567.1| hypothetical protein Mmcs_5467 [Mycobacterium sp. MCS]
gi|119697969|gb|ABL95040.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=177
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/172 (27%), Positives = 75/172 (44%), Gaps = 19/172 (11%)
Query 7 LSTDLQDWIRLSGMNMIQGSETNDGRTILWNKGGEVRYFI-----DRLAGWYVITSSDRM 61
LS D+ W R + + + + + + G RY+I DRL +T +
Sbjct 7 LSADVLGWARTA--HYVTAIADDGDIQLRSDAGAPTRYYIRRRGPDRLE----LTQTADG 60
Query 62 SREGYEFAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSI-----GTMT 116
E A + V+E YL G F +R + +LP + P+ E+L Y++ G T
Sbjct 61 DAEQPVLFVARIDVLEHYLVGLFADDIREDLDLPFLDLPYGTEDLADGYALSEVTRGYRT 120
Query 117 FAGRQRDTLIDSSGTVVAITAADRLVELSHYLDVSVNVIKDSFLDSEGKPLF 168
+G R + + +++ LV LSHYL V +K +FL+ G PL
Sbjct 121 LSGAGRGPIAAAPDPTLSLLT---LVPLSHYLGWPVPELKRAFLNPAGAPLI 169
>gi|296393019|ref|YP_003657903.1| hypothetical protein Srot_0590 [Segniliparus rotundus DSM 44985]
gi|296180166|gb|ADG97072.1| hypothetical protein Srot_0590 [Segniliparus rotundus DSM 44985]
Length=189
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/152 (31%), Positives = 69/152 (46%), Gaps = 21/152 (13%)
Query 25 GSETNDGRTILW--NKGGEV--RYFIDRLA--GWYVITSSDRMSREGYEFAAASMSVIEK 78
GS G +W ++GG V Y + R GW + + S E FAA+ ++ +E+
Sbjct 31 GSFDEQGDCSIWEEDQGGRVLTAYLLHRRESDGWVEVA---KGSAERLVFAASGLAAVER 87
Query 79 YLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIGTMTFAGRQRDTLIDSSGTVVAITAA 138
Y +G +VR L EL I + R D L D++G +VA
Sbjct 88 YFWGLLADAVRERLGL---------RELQARTDIASGY---RIEDGLRDAAGRLVAKGEQ 135
Query 139 DRLVELSHYLDVSVNVIKDSFLDSEGKPLFTL 170
LV LS L +++ ++ S LD EGKPLF +
Sbjct 136 QSLVALSRSLAPTLDQLETSLLDPEGKPLFAV 167
>gi|269794792|ref|YP_003314247.1| hypothetical protein Sked_14770 [Sanguibacter keddieii DSM 10542]
gi|269096977|gb|ACZ21413.1| hypothetical protein Sked_14770 [Sanguibacter keddieii DSM 10542]
Length=458
Score = 38.1 bits (87), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/151 (22%), Positives = 61/151 (41%), Gaps = 21/151 (13%)
Query 35 LWNKGGEVRYFIDRLAGWYVITSSDRMSREGYEFAAASMSVIEKYLYGYFGGSVRSEREL 94
+W+ GGE R+ + + + R E A+S+ +E+YL G S
Sbjct 33 VWSTGGEERHRVRASDSGLAVAGASRSGSYATELQASSIEDVERYLTFLIGNS------- 85
Query 95 PAIRAPFQPEELMPEYSIGTMTFAGRQRDTLIDSSGTVVAITAADRLV-----------E 143
A+R P + S T AG + T + + + +++ R V
Sbjct 86 -AVRGPRG--HTLLSTSTQTPLAAGIESATDAEGNAHLWSVSDPRRTVTFLRGVPWEPRT 142
Query 144 LSHYLDVSVNVIKDSFLDSEGKPLFTLWKDY 174
SH + V V +++ + LD G P+F + + +
Sbjct 143 FSHLMGVPVGLLRRALLDEHGSPVFDVGQPH 173
Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 54/140 (39%), Gaps = 17/140 (12%)
Query 41 EVRYFIDRLAGWYVITSSDRMSREGYEFAAASMSVIEKYLYGYFGGSVRSEREL--PAIR 98
E Y + GW+ + R R A +E+YL G + R L P +
Sbjct 216 EAGYEVSDTDGWWCVHRYSRGLRHA-TLRARRAEDVERYLLLRLGPAARHSPHLRLPLLV 274
Query 99 APFQP---------EELMPEYSIGTMTFAGRQRDTLIDSSGTVVAITAADRLVELSHYLD 149
P P E L P + + G +R I +G + A A D L+H L
Sbjct 275 EPAPPVEIADGLRFEPLEPGW-VSVREADGSERGIEIADAGIIAARDARD----LTHLLR 329
Query 150 VSVNVIKDSFLDSEGKPLFT 169
+ I++S+LD+ G P +
Sbjct 330 STPQTIRESYLDAAGSPALS 349
>gi|116787167|gb|ABK24396.1| unknown [Picea sitchensis]
Length=137
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/71 (31%), Positives = 36/71 (51%), Gaps = 2/71 (2%)
Query 102 QPEELMPEYSIGTMTFAGRQRDTLIDSSGTVVAITAADRLVELSHYLDVSVNVIKDSFLD 161
QP+ + E+ + ++F +++D SG V TAAD L EL Y ++ N++ S
Sbjct 68 QPQSITNEHGVPGLSFMSSH--SVMDGSGLFVHKTAADALEELRSYREMKDNLLSQSGTQ 125
Query 162 SEGKPLFTLWK 172
+ G P T K
Sbjct 126 AVGTPANTHVK 136
>gi|254431614|ref|ZP_05045317.1| hypothetical protein CPCC7001_1505 [Cyanobium sp. PCC 7001]
gi|197626067|gb|EDY38626.1| hypothetical protein CPCC7001_1505 [Cyanobium sp. PCC 7001]
Length=517
Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (49%), Gaps = 3/76 (3%)
Query 54 VITSSDRMSREGYEFAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIG 113
+ + R+ R+G F +S + ++ GG + ++ A++ PF P +L+ + G
Sbjct 341 ALIGAPRLQRDGLGFHEVLVSKVTRWQVEREGGGMEVQQ---AVQEPFNPNDLIARSADG 397
Query 114 TMTFAGRQRDTLIDSS 129
+ F GR D + SS
Sbjct 398 ALIFGGRSNDVFLFSS 413
>gi|145494478|ref|XP_001433233.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400350|emb|CAK65836.1| unnamed protein product [Paramecium tetraurelia]
Length=462
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/101 (27%), Positives = 44/101 (44%), Gaps = 4/101 (3%)
Query 63 REGYEFAAASMSVIEKYLYGYFGGSVRSERELPAIRAPFQPEELMPEYSIGTMTFAGRQR 122
+EG ++ I Y F G +R ++ + I +Q E + E ++ + F R+
Sbjct 81 KEGKTLPKITLENIWIYTDNGFSGEIRPQKSMKIIFLNYQDENVSIEENLNQLQFINRKI 140
Query 123 DTLIDSSGTVVAITAADRLVELSHYLDVSVNVIKDSFLDSE 163
T+ + T I A D + SH + NVI D F D E
Sbjct 141 KTI--CAKTEFKIRAIDG--KNSHLIQQITNVIDDMFYDIE 177
>gi|323358289|ref|YP_004224685.1| hypothetical protein MTES_1841 [Microbacterium testaceum StLB037]
gi|323274660|dbj|BAJ74805.1| hypothetical protein MTES_1841 [Microbacterium testaceum StLB037]
Length=174
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (47%), Gaps = 4/136 (2%)
Query 35 LWNKGGEVRYFIDRLAGWYVITSSDRMSREGYEFAAASMSVIEKYLYGYFGGSVRSEREL 94
L + GGE+RY I + Y++T ++R AA++ +E L ++ R L
Sbjct 31 LADAGGEIRYTIAAVPDGYLLTRAERAEEPEELMWAATLGYVEIMLVELMSPAI-EHRRL 89
Query 95 PAIRAPFQPEELMPEYSI--GTMTFAGRQRDTLIDSSGTVVAITAADRLVELSHYLDVSV 152
P I+ P+ +E ++ +AG +RD ++ +V +++ SH L S+
Sbjct 90 PRIKLPYGWDEAADGFAPFRADGRWAGLRRDG-VELPVRLVDGGILHPVIQYSHLLAGSL 148
Query 153 NVIKDSFLDSEGKPLF 168
+ +SF +G PL
Sbjct 149 RELINSFSSPDGTPLL 164
>gi|183219576|ref|YP_001837572.1| putative potassium ion transport TrkA-like protein [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
gi|189909717|ref|YP_001961272.1| potassium uptake system NAD-binding protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167774393|gb|ABZ92694.1| Potassium uptake system, NAD-binding component [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167777998|gb|ABZ96296.1| Putative cation transporter, putative potassium ion transport
TrkA-like protein [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length=231
Score = 34.3 bits (77), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (43%), Gaps = 7/80 (8%)
Query 93 ELPAIRAPFQPEELMPEYSIGTMTFAGRQRDTLIDSSGTVVAITAADRLV-------ELS 145
EL IR F PEE +F G + L+ +VV +T R + +L
Sbjct 111 ELLGIRDLFNPEEKAARSMAEIFSFVGMRSSFLLSDEYSVVEVTVPKRYINKTIAEADLR 170
Query 146 HYLDVSVNVIKDSFLDSEGK 165
H +++V IK F D E K
Sbjct 171 HKYNINVITIKRPFTDKETK 190
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 149040830208
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40