BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3905c
Length=103
Score E
Sequences producing significant alignments: (Bits) Value
gi|15611041|ref|NP_218422.1| hypothetical protein Rv3905c [Mycob... 197 3e-49
gi|240168383|ref|ZP_04747042.1| Esat-6 like protein esxF [Mycoba... 147 4e-34
gi|342858988|ref|ZP_08715642.1| hypothetical protein MCOL_08928 ... 135 3e-30
gi|183985436|ref|YP_001853727.1| EsaT-6 like protein EsxF [Mycob... 134 5e-30
gi|296168166|ref|ZP_06850187.1| conserved hypothetical protein [... 124 4e-27
gi|118620058|ref|YP_908390.1| EsaT-6 like protein EsxF [Mycobact... 114 3e-24
gi|31795078|ref|NP_857571.1| hypothetical protein Mb3935c [Mycob... 111 4e-23
gi|41410098|ref|NP_962934.1| hypothetical protein MAP4000c [Myco... 100 9e-20
gi|118462464|ref|YP_883771.1| hypothetical protein MAV_4642 [Myc... 100 1e-19
gi|118472978|ref|YP_886238.1| hypothetical protein MSMEG_1872 [M... 52.4 2e-05
gi|108798316|ref|YP_638513.1| hypothetical protein Mmcs_1345 [My... 51.6 4e-05
gi|126433981|ref|YP_001069672.1| hypothetical protein Mjls_1379 ... 47.8 6e-04
gi|305680103|ref|ZP_07402913.1| WXG100 family type VII secretion... 45.8 0.002
gi|239988429|ref|ZP_04709093.1| hypothetical protein SrosN1_1406... 45.4 0.003
gi|145294749|ref|YP_001137570.1| hypothetical protein cgR_0697 [... 45.4 0.003
gi|19551813|ref|NP_599815.1| hypothetical protein NCgl0554 [Cory... 45.1 0.004
gi|296393212|ref|YP_003658096.1| hypothetical protein Srot_0786 ... 44.3 0.007
gi|317507007|ref|ZP_07964774.1| hypothetical protein HMPREF9336_... 43.5 0.011
gi|256380551|ref|YP_003104211.1| hypothetical protein Amir_6566 ... 43.1 0.014
gi|337290069|ref|YP_004629090.1| hypothetical protein CULC22_004... 42.0 0.026
gi|120402133|ref|YP_951962.1| Fis family transcriptional regulat... 42.0 0.034
gi|325000966|ref|ZP_08122078.1| hypothetical protein PseP1_19472... 41.6 0.044
gi|54026240|ref|YP_120482.1| hypothetical protein nfa42690 [Noca... 41.2 0.058
gi|19551814|ref|NP_599816.1| hypothetical protein NCgl0555 [Cory... 40.4 0.097
gi|302864925|ref|YP_003833562.1| hypothetical protein Micau_0419... 40.0 0.11
gi|296393519|ref|YP_003658403.1| hypothetical protein Srot_1099 ... 39.7 0.15
gi|172040053|ref|YP_001799767.1| hypothetical protein cur_0373 [... 39.3 0.17
gi|297202748|ref|ZP_06920145.1| conserved hypothetical protein [... 39.3 0.18
gi|297192643|ref|ZP_06910041.1| conserved hypothetical protein [... 39.3 0.19
gi|315501210|ref|YP_004080097.1| hypothetical protein ML5_0394 [... 38.9 0.26
gi|159039954|ref|YP_001539207.1| hypothetical protein Sare_4442 ... 38.5 0.36
gi|328881110|emb|CCA54349.1| hypothetical protein SVEN_1062 [Str... 38.1 0.47
gi|169630194|ref|YP_001703843.1| hypothetical protein MAB_3112 [... 37.7 0.51
gi|54024017|ref|YP_118259.1| hypothetical protein nfa20490 [Noca... 37.7 0.52
gi|238062234|ref|ZP_04606943.1| hypothetical protein MCAG_03200 ... 37.4 0.67
gi|291297940|ref|YP_003509218.1| hypothetical protein Snas_0408 ... 37.4 0.69
gi|225020499|ref|ZP_03709691.1| hypothetical protein CORMATOL_00... 37.4 0.75
gi|300857818|ref|YP_003782801.1| hypothetical protein cpfrc_0040... 37.0 0.88
gi|311898690|dbj|BAJ31098.1| hypothetical protein KSE_53230 [Kit... 37.0 1.1
gi|330465226|ref|YP_004402969.1| hypothetical protein VAB18032_0... 36.6 1.4
gi|283456428|ref|YP_003360992.1| [protein-PII] uridylyltransfera... 36.6 1.4
gi|171742485|ref|ZP_02918292.1| hypothetical protein BIFDEN_0159... 36.2 1.4
gi|154508575|ref|ZP_02044217.1| hypothetical protein ACTODO_0107... 36.2 1.6
gi|145593044|ref|YP_001157341.1| hypothetical protein Strop_0478... 36.2 1.6
gi|134103211|ref|YP_001108872.1| hypothetical protein SACE_6782 ... 36.2 1.8
gi|163747876|ref|ZP_02155211.1| putative transcriptional regulat... 36.2 1.8
gi|336326387|ref|YP_004606353.1| hypothetical protein CRES_1836 ... 35.8 2.0
gi|334563184|ref|ZP_08516175.1| hypothetical protein CbovD2_0130... 35.8 2.0
gi|296394878|ref|YP_003659762.1| hypothetical protein Srot_2494 ... 35.8 2.1
gi|225351785|ref|ZP_03742808.1| hypothetical protein BIFPSEUDO_0... 35.8 2.3
>gi|15611041|ref|NP_218422.1| hypothetical protein Rv3905c [Mycobacterium tuberculosis H37Rv]
gi|15843537|ref|NP_338574.1| hypothetical protein MT4024 [Mycobacterium tuberculosis CDC1551]
gi|148663772|ref|YP_001285295.1| putative esat-6 like protein EsxF [Mycobacterium tuberculosis
H37Ra]
74 more sequence titles
Length=103
Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/103 (100%), Positives = 103/103 (100%), Gaps = 0/103 (0%)
Query 1 MGADDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWEL 60
MGADDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWEL
Sbjct 1 MGADDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWEL 60
Query 61 WHRGAGEVQLGLSMLAAAIAHAGAGYQHNETASAQVLREVGGG 103
WHRGAGEVQLGLSMLAAAIAHAGAGYQHNETASAQVLREVGGG
Sbjct 61 WHRGAGEVQLGLSMLAAAIAHAGAGYQHNETASAQVLREVGGG 103
>gi|240168383|ref|ZP_04747042.1| Esat-6 like protein esxF [Mycobacterium kansasii ATCC 12478]
Length=103
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 83/103 (81%), Positives = 91/103 (89%), Gaps = 0/103 (0%)
Query 1 MGADDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWEL 60
M A DTLRV+P VMQGFA SL GAAEHLA QLAELD+QVG+MLGGWRGASGS+YGSAWEL
Sbjct 1 MDAGDTLRVDPVVMQGFAESLRGAAEHLAAQLAELDSQVGEMLGGWRGASGSSYGSAWEL 60
Query 61 WHRGAGEVQLGLSMLAAAIAHAGAGYQHNETASAQVLREVGGG 103
WHRGAGEV LGL++LA AIA AGAGYQ E+ASAQ +REVGGG
Sbjct 61 WHRGAGEVHLGLTILAEAIAEAGAGYQQKESASAQAMREVGGG 103
>gi|342858988|ref|ZP_08715642.1| hypothetical protein MCOL_08928 [Mycobacterium colombiense CECT
3035]
gi|342133229|gb|EGT86432.1| hypothetical protein MCOL_08928 [Mycobacterium colombiense CECT
3035]
Length=102
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/101 (69%), Positives = 80/101 (80%), Gaps = 0/101 (0%)
Query 3 ADDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWH 62
AD+TLRV+P VMQG A SL GAAE L+ QL++LD QVGQMLGGW+GA+G+AYGSAWELWH
Sbjct 2 ADETLRVDPVVMQGAAVSLSGAAEQLSAQLSQLDDQVGQMLGGWQGAAGTAYGSAWELWH 61
Query 63 RGAGEVQLGLSMLAAAIAHAGAGYQHNETASAQVLREVGGG 103
+GA EV+LGLSMLA + AG YQ NE SAQ R V GG
Sbjct 62 KGAREVELGLSMLARLVGQAGGAYQSNEAGSAQAERSVRGG 102
>gi|183985436|ref|YP_001853727.1| EsaT-6 like protein EsxF [Mycobacterium marinum M]
gi|183178762|gb|ACC43872.1| EsaT-6 like protein EsxF [Mycobacterium marinum M]
Length=103
Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/103 (71%), Positives = 80/103 (78%), Gaps = 0/103 (0%)
Query 1 MGADDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWEL 60
M AD TL A M GFA SL GAAEHL +LAEL+ QVG MLGGWRGASGSA+ SAWEL
Sbjct 1 MDADGTLSANAAAMLGFAESLRGAAEHLQGELAELEGQVGDMLGGWRGASGSAFASAWEL 60
Query 61 WHRGAGEVQLGLSMLAAAIAHAGAGYQHNETASAQVLREVGGG 103
W RGAGEVQLGLSMLA ++ AGAGYQ NE ASA+ LRE+G G
Sbjct 61 WRRGAGEVQLGLSMLAESVGQAGAGYQANEAASARALRELGHG 103
>gi|296168166|ref|ZP_06850187.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896844|gb|EFG76473.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=102
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/101 (63%), Positives = 77/101 (77%), Gaps = 0/101 (0%)
Query 3 ADDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWH 62
AD+T+RV+P VM A S+ GAAEHL+ +L +LD Q+GQ+LGGW+GASGSAY SAWELWH
Sbjct 2 ADETVRVDPVVMHSHAVSIGGAAEHLSAELTQLDDQLGQLLGGWKGASGSAYASAWELWH 61
Query 63 RGAGEVQLGLSMLAAAIAHAGAGYQHNETASAQVLREVGGG 103
RGA EVQ+GLSMLA + AG G+Q NE SA+ R V G
Sbjct 62 RGAREVQVGLSMLARLVDQAGEGFQANEAGSARAERAVRDG 102
>gi|118620058|ref|YP_908390.1| EsaT-6 like protein EsxF [Mycobacterium ulcerans Agy99]
gi|118572168|gb|ABL06919.1| EsaT-6 like protein EsxF [Mycobacterium ulcerans Agy99]
Length=132
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/103 (69%), Positives = 79/103 (77%), Gaps = 0/103 (0%)
Query 1 MGADDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWEL 60
M AD TL A M GFA SL GAAEHL +LAEL+ QVG MLGGWRGA+GSA+ SAWEL
Sbjct 1 MDADGTLGANAAAMLGFAESLHGAAEHLQGELAELEGQVGDMLGGWRGAAGSAFASAWEL 60
Query 61 WHRGAGEVQLGLSMLAAAIAHAGAGYQHNETASAQVLREVGGG 103
W RGAGEVQ GLSMLA ++ AGAGYQ NE ASA+ LRE+G G
Sbjct 61 WRRGAGEVQFGLSMLAESVGQAGAGYQANEAASARALRELGHG 103
>gi|31795078|ref|NP_857571.1| hypothetical protein Mb3935c [Mycobacterium bovis AF2122/97]
gi|121639816|ref|YP_980040.1| putative ESAT-6 like protein 13 esxF [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|224992311|ref|YP_002647001.1| putative EsaT-6 like protein 13 [Mycobacterium bovis BCG str.
Tokyo 172]
gi|31620676|emb|CAD96121.1| PUTATIVE ESAT-6 LIKE PROTEIN 13 (HYPOTHETICAL ALANINE AND GLYCINE
RICH PROTEIN) [Mycobacterium bovis AF2122/97]
gi|121495464|emb|CAL73952.1| Putative ESAT-6 like protein 13 esxF [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|224775427|dbj|BAH28233.1| putative EsaT-6 like protein 13 [Mycobacterium bovis BCG str.
Tokyo 172]
gi|341603837|emb|CCC66519.1| putative ESAT-6 like protein 13 esxF [Mycobacterium bovis BCG
str. Moreau RDJ]
Length=57
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/57 (100%), Positives = 57/57 (100%), Gaps = 0/57 (0%)
Query 1 MGADDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSA 57
MGADDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSA
Sbjct 1 MGADDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSA 57
>gi|41410098|ref|NP_962934.1| hypothetical protein MAP4000c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398931|gb|AAS06550.1| hypothetical protein MAP_4000c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=113
Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/101 (68%), Positives = 79/101 (79%), Gaps = 0/101 (0%)
Query 3 ADDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWH 62
+D+T+RV+P VMQG AASL GAAEHL+ QL +LD QVGQMLGGW+GASGSAY +AWELWH
Sbjct 13 SDNTVRVDPVVMQGAAASLSGAAEHLSAQLGQLDDQVGQMLGGWQGASGSAYAAAWELWH 72
Query 63 RGAGEVQLGLSMLAAAIAHAGAGYQHNETASAQVLREVGGG 103
RGA EVQLGL+MLA + AG Y NE +AQ R V GG
Sbjct 73 RGAREVQLGLAMLARLVGQAGEAYASNEAGAAQAERAVRGG 113
>gi|118462464|ref|YP_883771.1| hypothetical protein MAV_4642 [Mycobacterium avium 104]
gi|254777079|ref|ZP_05218595.1| hypothetical protein MaviaA2_20769 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118163751|gb|ABK64648.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336460441|gb|EGO39337.1| WXG100 family type VII secretion target [Mycobacterium avium
subsp. paratuberculosis S397]
Length=102
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/101 (68%), Positives = 79/101 (79%), Gaps = 0/101 (0%)
Query 3 ADDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWH 62
+D+T+RV+P VMQG AASL GAAEHL+ QL +LD QVGQMLGGW+GASGSAY +AWELWH
Sbjct 2 SDNTVRVDPVVMQGAAASLSGAAEHLSAQLGQLDDQVGQMLGGWQGASGSAYAAAWELWH 61
Query 63 RGAGEVQLGLSMLAAAIAHAGAGYQHNETASAQVLREVGGG 103
RGA EVQLGL+MLA + AG Y NE +AQ R V GG
Sbjct 62 RGAREVQLGLAMLARLVGQAGEAYASNEAGAAQAERAVRGG 102
>gi|118472978|ref|YP_886238.1| hypothetical protein MSMEG_1872 [Mycobacterium smegmatis str.
MC2 155]
gi|118174265|gb|ABK75161.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=289
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (36%), Positives = 48/82 (59%), Gaps = 1/82 (1%)
Query 6 TLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLG-GWRGASGSAYGSAWELWHRG 64
+L V + ++ +A+L A + L L+ +D V Q+LG GW+G +GSAY W+ WH G
Sbjct 4 SLEVVTSELRSASAALADAGQRLQDGLSAVDLSVDQLLGSGWKGGAGSAYSEQWDKWHNG 63
Query 65 AGEVQLGLSMLAAAIAHAGAGY 86
AG+V GL ++ ++ + Y
Sbjct 64 AGQVIRGLQAMSESLKASADSY 85
>gi|108798316|ref|YP_638513.1| hypothetical protein Mmcs_1345 [Mycobacterium sp. MCS]
gi|119867413|ref|YP_937365.1| hypothetical protein Mkms_1363 [Mycobacterium sp. KMS]
gi|108768735|gb|ABG07457.1| protein of unknown function DUF909 [Mycobacterium sp. MCS]
gi|119693502|gb|ABL90575.1| protein of unknown function DUF909 [Mycobacterium sp. KMS]
Length=246
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/81 (39%), Positives = 46/81 (57%), Gaps = 1/81 (1%)
Query 18 AASLDGAAEHLAVQLAELDAQVGQMLG-GWRGASGSAYGSAWELWHRGAGEVQLGLSMLA 76
A L A + L L+ +D +VGQ+LG GW+G + SA+G+ WE WH GAG+V GL ++
Sbjct 16 ATRLADAGQRLQDGLSGVDLEVGQLLGSGWKGGAASAFGTEWEKWHSGAGQVVRGLQTMS 75
Query 77 AAIAHAGAGYQHNETASAQVL 97
+ A Y + +A L
Sbjct 76 QWLTVAAKEYAKTDEQAAGAL 96
>gi|126433981|ref|YP_001069672.1| hypothetical protein Mjls_1379 [Mycobacterium sp. JLS]
gi|126233781|gb|ABN97181.1| protein of unknown function DUF909 [Mycobacterium sp. JLS]
Length=250
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/67 (38%), Positives = 41/67 (62%), Gaps = 1/67 (1%)
Query 32 LAELDAQVGQMLG-GWRGASGSAYGSAWELWHRGAGEVQLGLSMLAAAIAHAGAGYQHNE 90
L+ +D +VGQ+LG GW+G + +A+G+ W+ WH GAG+V GL ++ + A Y +
Sbjct 30 LSGVDLEVGQLLGSGWKGGAATAFGTEWDKWHSGAGQVVRGLQTMSQWLTVAAKEYAKTD 89
Query 91 TASAQVL 97
+A L
Sbjct 90 EQAAGAL 96
>gi|305680103|ref|ZP_07402913.1| WXG100 family type VII secretion target [Corynebacterium matruchotii
ATCC 14266]
gi|305660723|gb|EFM50220.1| WXG100 family type VII secretion target [Corynebacterium matruchotii
ATCC 14266]
Length=104
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/99 (27%), Positives = 46/99 (47%), Gaps = 0/99 (0%)
Query 5 DTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRG 64
+T R E VM A +D + +L+ L V + G W G + +++ + W
Sbjct 3 NTFRTEADVMVTTAGQVDNTNSEVQSELSRLRGVVDGLRGAWSGQAQASFDELMQRWDTN 62
Query 65 AGEVQLGLSMLAAAIAHAGAGYQHNETASAQVLREVGGG 103
A ++ L+ + I +++ ET++AQ L VGGG
Sbjct 63 AKDLSDALTSIGENIRANARAFENVETSNAQSLNHVGGG 101
>gi|239988429|ref|ZP_04709093.1| hypothetical protein SrosN1_14065 [Streptomyces roseosporus NRRL
11379]
gi|291445413|ref|ZP_06584803.1| predicted protein [Streptomyces roseosporus NRRL 15998]
gi|291348360|gb|EFE75264.1| predicted protein [Streptomyces roseosporus NRRL 15998]
Length=133
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/98 (31%), Positives = 45/98 (46%), Gaps = 8/98 (8%)
Query 7 LRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAG 66
LRV+ + A LD HL Q+ +DA V + GWRG + AY + HRGA
Sbjct 10 LRVKGDRLTVLADDLDAMQTHLDKQIKRMDAVVDSIEAGWRGPAAKAYRA----LHRGAA 65
Query 67 E----VQLGLSMLAAAIAHAGAGYQHNETASAQVLREV 100
E +++ L L + + G+ E + LR+V
Sbjct 66 EDAVRIRMVLQRLEQGVRLSRDGFSEQELDIMERLRQV 103
>gi|145294749|ref|YP_001137570.1| hypothetical protein cgR_0697 [Corynebacterium glutamicum R]
gi|140844669|dbj|BAF53668.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045943|gb|EGV41612.1| hypothetical protein CgS9114_02348 [Corynebacterium glutamicum
S9114]
Length=108
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/97 (25%), Positives = 44/97 (46%), Gaps = 0/97 (0%)
Query 7 LRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAG 66
R E VM A +D + + +L+ L V + G W G + ++ S W+ A
Sbjct 5 FRTESDVMLATAGQVDDINDQVQSELSRLRGVVDSVRGSWAGQAQVSFDSLMNRWNSSAR 64
Query 67 EVQLGLSMLAAAIAHAGAGYQHNETASAQVLREVGGG 103
++Q L+ ++ I H +++ E ++Q VG G
Sbjct 65 QLQEALASISDNIRHNARSFENTEADNSQAFNAVGAG 101
>gi|19551813|ref|NP_599815.1| hypothetical protein NCgl0554 [Corynebacterium glutamicum ATCC
13032]
gi|62389468|ref|YP_224870.1| hypothetical protein cg0671 [Corynebacterium glutamicum ATCC
13032]
gi|21323344|dbj|BAB97972.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
gi|41324802|emb|CAF19284.1| conserved hypothetical protein [Corynebacterium glutamicum ATCC
13032]
Length=108
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/97 (25%), Positives = 45/97 (47%), Gaps = 0/97 (0%)
Query 7 LRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAG 66
R E VM A+ +D + + +L+ L V + G W G + ++ S W+ A
Sbjct 5 FRTESDVMLATASQVDDINDQVQGELSRLRGVVDSVRGSWAGQAQVSFDSLMNRWNSSAR 64
Query 67 EVQLGLSMLAAAIAHAGAGYQHNETASAQVLREVGGG 103
++Q L+ ++ I H +++ E ++Q VG G
Sbjct 65 QLQEALASISDNIRHNARSFENTEADNSQAFNAVGAG 101
>gi|296393212|ref|YP_003658096.1| hypothetical protein Srot_0786 [Segniliparus rotundus DSM 44985]
gi|296180359|gb|ADG97265.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=104
Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/96 (29%), Positives = 42/96 (44%), Gaps = 0/96 (0%)
Query 5 DTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRG 64
D+L VEPA M+ + G AE + + +L + ++ GW G S S + WE W G
Sbjct 3 DSLGVEPAEMRSVQQLIGGVAEEMRSEFGKLARRGDELAEGWAGTSASKFRPPWEEWKEG 62
Query 65 AGEVQLGLSMLAAAIAHAGAGYQHNETASAQVLREV 100
V L + + + Y E ++Q L V
Sbjct 63 CETVIAALEGESGLLGESADEYDQQEGENSQSLARV 98
>gi|317507007|ref|ZP_07964774.1| hypothetical protein HMPREF9336_01145 [Segniliparus rugosus ATCC
BAA-974]
gi|316254691|gb|EFV13994.1| hypothetical protein HMPREF9336_01145 [Segniliparus rugosus ATCC
BAA-974]
Length=104
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/90 (27%), Positives = 41/90 (46%), Gaps = 0/90 (0%)
Query 6 TLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGA 65
L+ + M+ A ++ E + + +L A+ ++ GW G SGS Y + WE W RG
Sbjct 4 PLKSDSEEMRAVAGLINSVVEEMRSEFEKLTARGDELAEGWVGVSGSKYRAPWEEWKRGG 63
Query 66 GEVQLGLSMLAAAIAHAGAGYQHNETASAQ 95
V L + + + A Y E+ + Q
Sbjct 64 KAVIDALEGESGLLDESAAEYDRQESENKQ 93
>gi|256380551|ref|YP_003104211.1| hypothetical protein Amir_6566 [Actinosynnema mirum DSM 43827]
gi|255924854|gb|ACU40365.1| protein of unknown function DUF909 [Actinosynnema mirum DSM 43827]
Length=96
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/87 (28%), Positives = 41/87 (48%), Gaps = 0/87 (0%)
Query 4 DDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHR 63
+D ++V+ + G A + G A + +L EL ++ ++ W G S Y A W
Sbjct 2 NDQIKVDFGQLSGAAGDISGHATKVQTELDELKQRIAPVVAQWDGVSSETYQEAQRKWDT 61
Query 64 GAGEVQLGLSMLAAAIAHAGAGYQHNE 90
A ++Q L+ + A+A A YQ E
Sbjct 62 AAADLQQVLASIGTAVAAATEAYQSAE 88
>gi|337290069|ref|YP_004629090.1| hypothetical protein CULC22_00453 [Corynebacterium ulcerans BR-AD22]
gi|334696192|gb|AEG80989.1| hypothetical protein CULC809_00449 [Corynebacterium ulcerans
809]
gi|334698375|gb|AEG83171.1| hypothetical protein CULC22_00453 [Corynebacterium ulcerans BR-AD22]
Length=105
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/95 (27%), Positives = 42/95 (45%), Gaps = 0/95 (0%)
Query 7 LRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAG 66
LR E VM A +D + +LA L V + G W GA+ ++ + + W AG
Sbjct 5 LRTEADVMMATAGRVDNTNAEVQSELARLRGIVDGIRGSWAGAAQVSFDNLMQRWDASAG 64
Query 67 EVQLGLSMLAAAIAHAGAGYQHNETASAQVLREVG 101
++++ L ++ I A + ET + VG
Sbjct 65 KLRMALQSISDNIRSNAASFDQTETDNKAAFASVG 99
>gi|120402133|ref|YP_951962.1| Fis family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119954951|gb|ABM11956.1| transcriptional regulator, Fis family [Mycobacterium vanbaalenii
PYR-1]
Length=103
Score = 42.0 bits (97), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/82 (35%), Positives = 37/82 (46%), Gaps = 0/82 (0%)
Query 5 DTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRG 64
D L+V+P V + S+ A L QL L + GW GA+ SAY W W G
Sbjct 2 DHLKVDPDVAFNTSRSVSNDAVELHEQLDSLQHDWDNLSRGWSGAASSAYSPLWAEWLDG 61
Query 65 AGEVQLGLSMLAAAIAHAGAGY 86
A + L L+ +A A A Y
Sbjct 62 ATTLVDTLEELSRKVAAAAAQY 83
>gi|325000966|ref|ZP_08122078.1| hypothetical protein PseP1_19472 [Pseudonocardia sp. P1]
Length=97
Score = 41.6 bits (96), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/89 (29%), Positives = 44/89 (50%), Gaps = 0/89 (0%)
Query 7 LRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAG 66
++V A ++ AA +DGA + QL +L + ++ GW G + + Y A W A
Sbjct 5 IKVTFAAIEQAAADIDGARARILGQLDDLRGYLAPVVSGWTGDAATRYDEAQRRWDGSAA 64
Query 67 EVQLGLSMLAAAIAHAGAGYQHNETASAQ 95
++ L + + AGAGY+ E +A+
Sbjct 65 DLTGTLQKIKVLVLDAGAGYRAVEADNAK 93
>gi|54026240|ref|YP_120482.1| hypothetical protein nfa42690 [Nocardia farcinica IFM 10152]
gi|54017748|dbj|BAD59118.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=104
Score = 41.2 bits (95), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/85 (29%), Positives = 44/85 (52%), Gaps = 2/85 (2%)
Query 5 DTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQML--GGWRGASGSAYGSAWELWH 62
D L+VE ++ A + A+ + ++ +LD +G+ L GW+G + SAY +W W
Sbjct 3 DELQVEVDRLREAARFVADKAQIIRERVTQLDTTIGKELLADGWQGKAASAYDESWVEWK 62
Query 63 RGAGEVQLGLSMLAAAIAHAGAGYQ 87
+GA ++ L A+ + A Y+
Sbjct 63 QGADDIVAALDSSASNLLDAANRYE 87
>gi|19551814|ref|NP_599816.1| hypothetical protein NCgl0555 [Corynebacterium glutamicum ATCC
13032]
gi|62389469|ref|YP_224871.1| hypothetical protein cg0672 [Corynebacterium glutamicum ATCC
13032]
gi|145294750|ref|YP_001137571.1| hypothetical protein cgR_0698 [Corynebacterium glutamicum R]
gi|21323345|dbj|BAB97973.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
gi|41324803|emb|CAF19285.1| conserved HYPOTHETICAL PROTEIN [Corynebacterium glutamicum ATCC
13032]
gi|140844670|dbj|BAF53669.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045944|gb|EGV41613.1| hypothetical protein CgS9114_02353 [Corynebacterium glutamicum
S9114]
Length=96
Score = 40.4 bits (93), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/77 (29%), Positives = 36/77 (47%), Gaps = 0/77 (0%)
Query 5 DTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRG 64
D +R E +QG A ++ + + L L +Q+ M+ W G S AY A W R
Sbjct 2 DMIRYEFGAIQGAATDINSTSGRINSLLDGLKSQLQPMVASWEGESSEAYSEAQLKWDRA 61
Query 65 AGEVQLGLSMLAAAIAH 81
A E+ L+ ++ +A
Sbjct 62 AAELNTILATISNTVAQ 78
>gi|302864925|ref|YP_003833562.1| hypothetical protein Micau_0419 [Micromonospora aurantiaca ATCC
27029]
gi|302567784|gb|ADL43986.1| hypothetical protein Micau_0419 [Micromonospora aurantiaca ATCC
27029]
Length=109
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/85 (32%), Positives = 41/85 (49%), Gaps = 0/85 (0%)
Query 10 EPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAGEVQ 69
E AVMQ AA + + L L+ L A++ + WRGA G ++ + W + +Q
Sbjct 11 EAAVMQQTAAKFEQVDQSLQTMLSGLMAELEVLQQAWRGAGGRSFAQVKQQWAQDQAALQ 70
Query 70 LGLSMLAAAIAHAGAGYQHNETASA 94
L A AI AG Y ++T +A
Sbjct 71 RALRETATAIRSAGRHYDVSDTEAA 95
>gi|296393519|ref|YP_003658403.1| hypothetical protein Srot_1099 [Segniliparus rotundus DSM 44985]
gi|296180666|gb|ADG97572.1| protein of unknown function DUF909 [Segniliparus rotundus DSM
44985]
Length=109
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/94 (30%), Positives = 44/94 (47%), Gaps = 1/94 (1%)
Query 11 PAVMQGFAASLDGAAEHLAVQLAELDAQVGQML-GGWRGASGSAYGSAWELWHRGAGEVQ 69
PA + A A A + L ++ L GGW G +G+++ A+ L+ +GA +VQ
Sbjct 10 PADIIDLAVRTSRLASQFAERRENLSNRMAAFLDGGWSGGAGTSFREAFALFDQGAKDVQ 69
Query 70 LGLSMLAAAIAHAGAGYQHNETASAQVLREVGGG 103
GL +L + YQ E A+ + L G G
Sbjct 70 QGLDLLGEKVGDGAREYQAQEQANQRGLTIQGAG 103
>gi|172040053|ref|YP_001799767.1| hypothetical protein cur_0373 [Corynebacterium urealyticum DSM
7109]
gi|171851357|emb|CAQ04333.1| hypothetical protein cu0373 [Corynebacterium urealyticum DSM
7109]
Length=94
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/93 (25%), Positives = 42/93 (46%), Gaps = 0/93 (0%)
Query 6 TLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGA 65
+ R + A M G A+++D + +L+ L V + G WRG + A+ + E W+ A
Sbjct 2 SFRTDVATMTGAASNVDQVNASIQGELSRLQGIVAETSGVWRGQAQGAFQNLMERWNTSA 61
Query 66 GEVQLGLSMLAAAIAHAGAGYQHNETASAQVLR 98
E+ L+ ++ I + E + Q R
Sbjct 62 RELSEALNSISENIRANARSFDDTELENMQAFR 94
>gi|297202748|ref|ZP_06920145.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197716736|gb|EDY60770.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=97
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/88 (28%), Positives = 42/88 (48%), Gaps = 0/88 (0%)
Query 9 VEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAGEV 68
V A + A + A + QL EL++ V ++ W G++ +Y + W + A +
Sbjct 7 VNFATISQAAQDVRSTAGKIRTQLDELESGVKRISASWEGSAQESYRAKQAEWDQRAASM 66
Query 69 QLGLSMLAAAIAHAGAGYQHNETASAQV 96
Q L +A A+ A YQ E+ +AQ+
Sbjct 67 QQTLEAIAKALDSAAQNYQATESKNAQI 94
>gi|297192643|ref|ZP_06910041.1| conserved hypothetical protein [Streptomyces pristinaespiralis
ATCC 25486]
gi|197723133|gb|EDY67041.1| conserved hypothetical protein [Streptomyces pristinaespiralis
ATCC 25486]
Length=129
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/101 (27%), Positives = 45/101 (45%), Gaps = 8/101 (7%)
Query 7 LRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAG 66
L V + A LD HL Q+ +DA V ++ GW+G + Y + H+GA
Sbjct 7 LDVSDDDLTRLAGDLDDMQRHLDNQVRRMDAVVDRIEAGWKGEAAKGYRA----LHQGAA 62
Query 67 E----VQLGLSMLAAAIAHAGAGYQHNETASAQVLREVGGG 103
E ++ L +L A+ + G+ E + + +RE G
Sbjct 63 EDAVRIREILKVLEEAMRMSRDGFTDQELDTLRRMREAGSS 103
>gi|315501210|ref|YP_004080097.1| hypothetical protein ML5_0394 [Micromonospora sp. L5]
gi|315407829|gb|ADU05946.1| hypothetical protein ML5_0394 [Micromonospora sp. L5]
Length=109
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/85 (32%), Positives = 40/85 (48%), Gaps = 0/85 (0%)
Query 10 EPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAGEVQ 69
E AVMQ AA + + L L+ L A++ + WRGA G ++ + W + +Q
Sbjct 11 EAAVMQQTAAKFEQVDQSLQTMLSGLMAELEVLQQAWRGAGGRSFAQVKQQWAQDQAALQ 70
Query 70 LGLSMLAAAIAHAGAGYQHNETASA 94
L A AI AG Y +T +A
Sbjct 71 RALRETATAIRSAGRHYDVADTEAA 95
>gi|159039954|ref|YP_001539207.1| hypothetical protein Sare_4442 [Salinispora arenicola CNS-205]
gi|157918789|gb|ABW00217.1| protein of unknown function DUF909 [Salinispora arenicola CNS-205]
Length=105
Score = 38.5 bits (88), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/77 (32%), Positives = 38/77 (50%), Gaps = 0/77 (0%)
Query 10 EPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAGEVQ 69
+ AVM+ AA + + L L+ L AQ+ + WRGA G ++ + W +Q
Sbjct 7 DTAVMEQTAARFEQVDQELHSMLSGLMAQLEVLRQAWRGAGGRSFEQVKQQWALDQRRLQ 66
Query 70 LGLSMLAAAIAHAGAGY 86
+ L AAA+ +G GY
Sbjct 67 VALRETAAAVRTSGQGY 83
>gi|328881110|emb|CCA54349.1| hypothetical protein SVEN_1062 [Streptomyces venezuelae ATCC
10712]
Length=141
Score = 38.1 bits (87), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/83 (27%), Positives = 37/83 (45%), Gaps = 0/83 (0%)
Query 17 FAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAGEVQLGLSMLA 76
A LD HL +Q+ +D V ++ W G +G AY + + A ++ GL +L
Sbjct 23 LADDLDAMQRHLNLQVQRMDGIVDRIQARWHGTTGDAYRTLHIEAAQDAVRIREGLRLLE 82
Query 77 AAIAHAGAGYQHNETASAQVLRE 99
A+ + G+ E LR+
Sbjct 83 EAVRLSRDGFTEQELEVLSRLRK 105
>gi|169630194|ref|YP_001703843.1| hypothetical protein MAB_3112 [Mycobacterium abscessus ATCC 19977]
gi|169242161|emb|CAM63189.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=105
Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/81 (31%), Positives = 39/81 (49%), Gaps = 3/81 (3%)
Query 10 EPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAGEVQ 69
E + FAASL A+ + + LD V + G WRG++ AY S W+ GA +V
Sbjct 15 EVGALSKFAASL---ADQMRAGSSSLDRDVQSLFGVWRGSAADAYRSGWDEMQDGATKVW 71
Query 70 LGLSMLAAAIAHAGAGYQHNE 90
L+ +A+ + A + E
Sbjct 72 NALTDIASTLGSNAAVFHAQE 92
>gi|54024017|ref|YP_118259.1| hypothetical protein nfa20490 [Nocardia farcinica IFM 10152]
gi|54015525|dbj|BAD56895.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=116
Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/53 (42%), Positives = 30/53 (57%), Gaps = 3/53 (5%)
Query 25 AEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAGEVQLGLSMLAA 77
AE L L LD +V +LG W+GA+ A+G W +GA +V L+ LAA
Sbjct 34 AESLINGLGTLDREVATVLGNWKGAAAEAFGDGWTETRKGAADV---LNALAA 83
>gi|238062234|ref|ZP_04606943.1| hypothetical protein MCAG_03200 [Micromonospora sp. ATCC 39149]
gi|237884045|gb|EEP72873.1| hypothetical protein MCAG_03200 [Micromonospora sp. ATCC 39149]
Length=105
Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/77 (33%), Positives = 35/77 (46%), Gaps = 0/77 (0%)
Query 10 EPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAGEVQ 69
E AVMQ AA + + L L L A++ + WRGA G ++ + W + +Q
Sbjct 7 EAAVMQQTAAKFEQVDQSLQSMLTGLLAELEVLQQAWRGAGGRSFEQVKQQWSQDQAALQ 66
Query 70 LGLSMLAAAIAHAGAGY 86
L A AI AG Y
Sbjct 67 RALRETATAIRTAGQQY 83
>gi|291297940|ref|YP_003509218.1| hypothetical protein Snas_0408 [Stackebrandtia nassauensis DSM
44728]
gi|290567160|gb|ADD40125.1| protein of unknown function DUF909 [Stackebrandtia nassauensis
DSM 44728]
Length=93
Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/93 (25%), Positives = 42/93 (46%), Gaps = 2/93 (2%)
Query 5 DTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRG 64
D ++V PA ++GF+ L +A L L L A++ M W G AY + W+
Sbjct 2 DVIKVSPAELEGFSGKLQSSASELDSILEGLRAKLDSM--QWAGGDKEAYEAQRTQWNTA 59
Query 65 AGEVQLGLSMLAAAIAHAGAGYQHNETASAQVL 97
++ + L+ + + A Y E +A++
Sbjct 60 VSDLNMLLNQIGRTVGTAKQDYVSTEGLNARMF 92
>gi|225020499|ref|ZP_03709691.1| hypothetical protein CORMATOL_00506 [Corynebacterium matruchotii
ATCC 33806]
gi|224946888|gb|EEG28097.1| hypothetical protein CORMATOL_00506 [Corynebacterium matruchotii
ATCC 33806]
Length=93
Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/90 (25%), Positives = 41/90 (46%), Gaps = 0/90 (0%)
Query 14 MQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAGEVQLGLS 73
M A +D + +L+ L V + G W G + +++ + W A ++ L+
Sbjct 1 MVTTAGQVDNTNSEVQSELSRLRGVVDGLRGAWSGQAQASFDELMQRWDTNAKDLSDALT 60
Query 74 MLAAAIAHAGAGYQHNETASAQVLREVGGG 103
+ I +++ ET++AQ L VGGG
Sbjct 61 SIGENIRANARAFENVETSNAQSLNHVGGG 90
>gi|300857818|ref|YP_003782801.1| hypothetical protein cpfrc_00401 [Corynebacterium pseudotuberculosis
FRC41]
gi|300685272|gb|ADK28194.1| hypothetical protein cpfrc_00401 [Corynebacterium pseudotuberculosis
FRC41]
gi|302330109|gb|ADL20303.1| WXG domain-containing protein [Corynebacterium pseudotuberculosis
1002]
gi|341824217|gb|AEK91738.1| WXG domain-containing protein [Corynebacterium pseudotuberculosis
PAT10]
Length=109
Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/95 (23%), Positives = 41/95 (44%), Gaps = 0/95 (0%)
Query 7 LRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAG 66
R E VM A+ +D + +LA L V + G W G++ +++ + + W AG
Sbjct 5 FRTEADVMVATASRVDNTNAEVQSELARLRGIVDGVRGSWAGSAQASFDNLMQRWDASAG 64
Query 67 EVQLGLSMLAAAIAHAGAGYQHNETASAQVLREVG 101
++++ L ++ I + E + VG
Sbjct 65 KLRMALQSISDNIRSNATSFDQTEADNKAAFASVG 99
>gi|311898690|dbj|BAJ31098.1| hypothetical protein KSE_53230 [Kitasatospora setae KM-6054]
Length=96
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/90 (25%), Positives = 43/90 (48%), Gaps = 0/90 (0%)
Query 7 LRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAG 66
++V +Q ++ + A + QL +L + V ++ W GA+ Y + W A
Sbjct 4 IKVNFQTIQSASSEVRQTAARIQSQLDDLKSGVQRIASSWEGAAQQGYQARQAQWDAKAA 63
Query 67 EVQLGLSMLAAAIAHAGAGYQHNETASAQV 96
++Q L +AAA+ +A YQ E ++ +
Sbjct 64 DLQQVLGRIAAALDNAAQSYQQTENQNSAI 93
>gi|330465226|ref|YP_004402969.1| hypothetical protein VAB18032_06225 [Verrucosispora maris AB-18-032]
gi|328808197|gb|AEB42369.1| hypothetical protein VAB18032_06225 [Verrucosispora maris AB-18-032]
Length=106
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/77 (33%), Positives = 36/77 (47%), Gaps = 0/77 (0%)
Query 10 EPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAGEVQ 69
+ AVMQ AA + A + L L+ L Q+ + WRGA G ++ + W + +Q
Sbjct 7 QAAVMQQTAAKFEQADQSLQSMLSGLLTQLEVLQQAWRGAGGRSFEQVKQQWSQDQAALQ 66
Query 70 LGLSMLAAAIAHAGAGY 86
L A AI AG Y
Sbjct 67 RALRETAGAIRTAGVHY 83
>gi|283456428|ref|YP_003360992.1| [protein-PII] uridylyltransferase [Bifidobacterium dentium Bd1]
gi|283103062|gb|ADB10168.1| glnD [protein-PII] uridylyltransferase [Bifidobacterium dentium
Bd1]
Length=94
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/89 (26%), Positives = 40/89 (45%), Gaps = 0/89 (0%)
Query 6 TLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGA 65
+ V P + +A + A+ +A +L LD QV ++ W GA+ AY A W+
Sbjct 3 SFSVRPEQVDVLSADIANDAKGIAQELDNLDTQVKSLIEQWDGAAREAYHQAQRDWNGKL 62
Query 66 GEVQLGLSMLAAAIAHAGAGYQHNETASA 94
E+ L ++ A + Y ++ SA
Sbjct 63 QEMNQILGQISQATSQIAQQYVESDARSA 91
>gi|171742485|ref|ZP_02918292.1| hypothetical protein BIFDEN_01597 [Bifidobacterium dentium ATCC
27678]
gi|306822396|ref|ZP_07455775.1| conserved hypothetical protein [Bifidobacterium dentium ATCC
27679]
gi|171278099|gb|EDT45760.1| hypothetical protein BIFDEN_01597 [Bifidobacterium dentium ATCC
27678]
gi|304554394|gb|EFM42302.1| conserved hypothetical protein [Bifidobacterium dentium ATCC
27679]
Length=95
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/89 (26%), Positives = 40/89 (45%), Gaps = 0/89 (0%)
Query 6 TLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGA 65
+ V P + +A + A+ +A +L LD QV ++ W GA+ AY A W+
Sbjct 4 SFSVRPEQVDVLSADIANDAKGIAQELDNLDTQVKSLIEQWDGAAREAYHQAQRDWNGKL 63
Query 66 GEVQLGLSMLAAAIAHAGAGYQHNETASA 94
E+ L ++ A + Y ++ SA
Sbjct 64 QEMNQILGQISQATSQIAQQYVESDARSA 92
>gi|154508575|ref|ZP_02044217.1| hypothetical protein ACTODO_01076 [Actinomyces odontolyticus
ATCC 17982]
gi|293191453|ref|ZP_06609195.1| putative low molecular weight protein antigen 7 [Actinomyces
odontolyticus F0309]
gi|153798209|gb|EDN80629.1| hypothetical protein ACTODO_01076 [Actinomyces odontolyticus
ATCC 17982]
gi|292820554|gb|EFF79530.1| putative low molecular weight protein antigen 7 [Actinomyces
odontolyticus F0309]
Length=93
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/88 (24%), Positives = 42/88 (48%), Gaps = 0/88 (0%)
Query 7 LRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAG 66
+V + AA ++ A +L L +L+ + Q+ W G + AY A W++G
Sbjct 3 FQVNYGALDAAAADINTGAANLQNCLDDLEQTLNQLRSSWEGQTQEAYDVAQRQWNQGLE 62
Query 67 EVQLGLSMLAAAIAHAGAGYQHNETASA 94
++ L ++A+ A + YQ + ++A
Sbjct 63 GLKDVLRRTSSAVDSARSNYQQTDQSNA 90
>gi|145593044|ref|YP_001157341.1| hypothetical protein Strop_0478 [Salinispora tropica CNB-440]
gi|145302381|gb|ABP52963.1| hypothetical protein Strop_0478 [Salinispora tropica CNB-440]
Length=109
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/81 (23%), Positives = 36/81 (45%), Gaps = 0/81 (0%)
Query 6 TLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGA 65
T+R + +M +D A+ L L +L Q+ + W+GA ++ + + +
Sbjct 2 TMRTDTGLMVKTEGDVDAVADRLTSNLNQLMDQLAPLYDQWKGAGAGSFQQVRQRFDQDM 61
Query 66 GEVQLGLSMLAAAIAHAGAGY 86
+ + L +A A+ AG Y
Sbjct 62 ARLNVALRAIAEAVGSAGKDY 82
>gi|134103211|ref|YP_001108872.1| hypothetical protein SACE_6782 [Saccharopolyspora erythraea NRRL
2338]
gi|291003845|ref|ZP_06561818.1| hypothetical protein SeryN2_04927 [Saccharopolyspora erythraea
NRRL 2338]
gi|133915834|emb|CAM05947.1| hypothetical protein SACE_6782 [Saccharopolyspora erythraea NRRL
2338]
Length=95
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/88 (27%), Positives = 42/88 (48%), Gaps = 0/88 (0%)
Query 7 LRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAG 66
++V+ + A L AA + +L EL+ + ++ W G + AY A E W + A
Sbjct 3 IKVDFGQLSQAADDLGQAATKIQGELDELEQMLKPLVSTWEGQAQEAYRQAQEEWDKAAA 62
Query 67 EVQLGLSMLAAAIAHAGAGYQHNETASA 94
+Q + + A++ A YQ E+ +A
Sbjct 63 NMQEIAAKMGMAVSTANEAYQQGESRNA 90
>gi|163747876|ref|ZP_02155211.1| putative transcriptional regulator [Oceanibulbus indolifex HEL-45]
gi|161378845|gb|EDQ03279.1| putative transcriptional regulator [Oceanibulbus indolifex HEL-45]
Length=197
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/102 (32%), Positives = 50/102 (50%), Gaps = 9/102 (8%)
Query 1 MGADDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWEL 60
+G DD RV V QG AS+D E L+V+L E ++ Q+ GGW + +AY SA L
Sbjct 41 VGRDDLARV---VGQG--ASVDLLVEDLSVELEERSFEIAQVAGGWMFRTRAAYASAIRL 95
Query 61 WHRGAGEVQLGLSMLAAAIAHAGAGYQHNETASAQVLREVGG 102
A ++ L+ L A A + + + L+++ G
Sbjct 96 ----AADIDDQLTDLNAFDVAVLAAVAYQQPITRDGLKDIFG 133
>gi|336326387|ref|YP_004606353.1| hypothetical protein CRES_1836 [Corynebacterium resistens DSM
45100]
gi|336102369|gb|AEI10189.1| hypothetical protein CRES_1836 [Corynebacterium resistens DSM
45100]
Length=94
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/93 (23%), Positives = 39/93 (42%), Gaps = 0/93 (0%)
Query 6 TLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGA 65
+ R + A M A+++DG + + +L L V + W+G + A+ + W A
Sbjct 2 SFRTDVATMHKAASNVDGTNDEVQSELKRLRGVVQETSSSWKGDAQGAFQNLMLRWDTNA 61
Query 66 GEVQLGLSMLAAAIAHAGAGYQHNETASAQVLR 98
E+ L +A I + + +A LR
Sbjct 62 RELSEALRSIADNIRRNAGSFSDTDGENADSLR 94
>gi|334563184|ref|ZP_08516175.1| hypothetical protein CbovD2_01306 [Corynebacterium bovis DSM
20582]
Length=95
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/93 (25%), Positives = 37/93 (40%), Gaps = 0/93 (0%)
Query 6 TLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGA 65
R VM A +D + +L L V + G W+G + +A+G W+ A
Sbjct 2 NFRTTTDVMHDAAGKVDTVNSEVQAELRRLQGTVDSVSGAWQGEAQAAFGQLMVRWNDSA 61
Query 66 GEVQLGLSMLAAAIAHAGAGYQHNETASAQVLR 98
E+ L+ +A I G+ E +A R
Sbjct 62 RELHQALTSIAENIRANARGFAQVEADNAAAFR 94
>gi|296394878|ref|YP_003659762.1| hypothetical protein Srot_2494 [Segniliparus rotundus DSM 44985]
gi|296182025|gb|ADG98931.1| protein of unknown function DUF909 [Segniliparus rotundus DSM
44985]
Length=96
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/86 (21%), Positives = 43/86 (50%), Gaps = 0/86 (0%)
Query 7 LRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGAG 66
+ + A +Q + + ++ + L EL ++V ++ GW G + + + W++ A
Sbjct 4 ISYDFAHIQELSTQIQSVSQQIESLLGELSSEVAKLAAGWEGEAQETWHALQTKWNQEAD 63
Query 67 EVQLGLSMLAAAIAHAGAGYQHNETA 92
+++ L L++ + AG QH E++
Sbjct 64 DLKTTLHDLSSKVGQAGESMQHAESS 89
>gi|225351785|ref|ZP_03742808.1| hypothetical protein BIFPSEUDO_03382 [Bifidobacterium pseudocatenulatum
DSM 20438]
gi|225158129|gb|EEG71412.1| hypothetical protein BIFPSEUDO_03382 [Bifidobacterium pseudocatenulatum
DSM 20438]
Length=95
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/89 (25%), Positives = 41/89 (47%), Gaps = 0/89 (0%)
Query 6 TLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLGGWRGASGSAYGSAWELWHRGA 65
+ V P + A+ + A+ +A +L L++QV ++G W G++ AY A W
Sbjct 4 SFSVRPEQVDVLASDIAADAKSIAQELENLNSQVSALIGQWDGSAREAYHQAQRNWDGKL 63
Query 66 GEVQLGLSMLAAAIAHAGAGYQHNETASA 94
E+ L ++ A + Y ++ SA
Sbjct 64 QEMNQILGQISQATSQIAQQYVESDARSA 92
Lambda K H
0.315 0.130 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127822873252
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40