BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3906c
Length=169
Score E
Sequences producing significant alignments: (Bits) Value
gi|15611042|ref|NP_218423.1| hypothetical protein Rv3906c [Mycob... 311 2e-83
gi|183985440|ref|YP_001853731.1| hypothetical protein MMAR_5470 ... 251 2e-65
gi|289748444|ref|ZP_06507822.1| LOW QUALITY PROTEIN: conserved h... 239 9e-62
gi|240168386|ref|ZP_04747045.1| hypothetical protein MkanA1_0368... 233 5e-60
gi|254823069|ref|ZP_05228070.1| hypothetical protein MintA_24285... 222 1e-56
gi|41410429|ref|NP_963265.1| hypothetical protein MAP4331c [Myco... 218 2e-55
gi|254777640|ref|ZP_05219156.1| hypothetical protein MaviaA2_236... 218 2e-55
gi|336459796|gb|EGO38710.1| hypothetical protein MAPs_46870 [Myc... 217 5e-55
gi|118465581|ref|YP_884404.1| hypothetical protein MAV_5293 [Myc... 216 1e-54
gi|342862332|ref|ZP_08718973.1| hypothetical protein MCOL_25698 ... 215 2e-54
gi|296167163|ref|ZP_06849570.1| conserved hypothetical protein [... 194 5e-48
gi|108802355|ref|YP_642552.1| hypothetical protein Mmcs_5396 [My... 178 2e-43
gi|333992970|ref|YP_004525584.1| hypothetical protein JDM601_433... 155 3e-36
gi|118471202|ref|YP_891119.1| hypothetical protein MSMEG_6925 [M... 142 2e-32
gi|169632005|ref|YP_001705654.1| hypothetical protein MAB_4932c ... 139 1e-31
gi|120406989|ref|YP_956818.1| hypothetical protein Mvan_6060 [My... 138 2e-31
gi|216781|dbj|BAA03283.1| AT9S [Mycobacterium tuberculosis] 122 1e-26
gi|315446808|ref|YP_004079687.1| hypothetical protein Mspyr1_532... 119 1e-25
gi|145221440|ref|YP_001132118.1| hypothetical protein Mflv_0846 ... 106 1e-21
gi|325677337|ref|ZP_08157002.1| hypothetical protein HMPREF0724_... 95.5 2e-18
gi|312142000|ref|YP_004009336.1| hypothetical protein REQ_47180 ... 89.0 2e-16
gi|343928705|ref|ZP_08768150.1| hypothetical protein GOALK_120_0... 78.6 3e-13
gi|326383883|ref|ZP_08205567.1| hypothetical protein SCNU_13158 ... 61.6 4e-08
gi|260579695|ref|ZP_05847555.1| conserved hypothetical protein [... 58.2 4e-07
gi|68535560|ref|YP_250265.1| hypothetical protein jk0490 [Coryne... 57.8 5e-07
gi|262204633|ref|YP_003275841.1| hypothetical protein Gbro_4835 ... 52.4 2e-05
gi|300780655|ref|ZP_07090510.1| conserved hypothetical protein [... 51.6 4e-05
gi|119486122|ref|ZP_01620182.1| hypothetical protein L8106_17302... 49.7 1e-04
gi|54027624|ref|YP_121866.1| hypothetical protein nfa56500 [Noca... 45.1 0.003
gi|225020985|ref|ZP_03710177.1| hypothetical protein CORMATOL_00... 44.7 0.004
gi|305680015|ref|ZP_07402825.1| thrombospondin type 3 repeat pro... 44.7 0.004
gi|291298550|ref|YP_003509828.1| hypothetical protein Snas_1025 ... 44.3 0.006
gi|262201137|ref|YP_003272345.1| hypothetical protein Gbro_1144 ... 42.7 0.019
gi|76155286|gb|AAX26546.2| SJCHGC03872 protein [Schistosoma japo... 41.6 0.040
gi|336324987|ref|YP_004604953.1| hypothetical protein CRES_0426 ... 41.2 0.058
gi|256092506|ref|XP_002581967.1| hypothetical protein [Schistoso... 40.0 0.10
gi|343925665|ref|ZP_08765182.1| hypothetical protein GOALK_048_0... 39.7 0.16
gi|271967241|ref|YP_003341437.1| hypothetical protein Sros_5959 ... 39.7 0.17
gi|336324959|ref|YP_004604925.1| hypothetical protein CRES_0398 ... 39.3 0.18
gi|340515055|gb|EGR45312.1| predicted protein [Trichoderma reese... 39.3 0.19
gi|296141885|ref|YP_003649128.1| hypothetical protein Tpau_4221 ... 39.3 0.19
gi|319936582|ref|ZP_08010996.1| hypothetical protein HMPREF9488_... 38.5 0.33
gi|340619611|ref|YP_004738064.1| hypothetical protein zobellia_3... 38.1 0.47
gi|291302586|ref|YP_003513864.1| hypothetical protein Snas_5136 ... 37.7 0.59
gi|195061623|ref|XP_001996032.1| GH14273 [Drosophila grimshawi] ... 37.4 0.66
gi|261252121|ref|ZP_05944694.1| thrombospondin type 3 repeat fam... 37.4 0.69
gi|300779788|ref|ZP_07089644.1| conserved hypothetical protein [... 37.4 0.70
gi|306811894|gb|ADN05991.1| conserved hypothetical protein [uncu... 36.6 1.2
gi|319951892|ref|YP_004163159.1| thrombospondin type 3 repeat-co... 36.6 1.3
gi|195399842|ref|XP_002058528.1| GJ14480 [Drosophila virilis] >g... 36.2 1.6
>gi|15611042|ref|NP_218423.1| hypothetical protein Rv3906c [Mycobacterium tuberculosis H37Rv]
gi|15843538|ref|NP_338575.1| hypothetical protein MT4025 [Mycobacterium tuberculosis CDC1551]
gi|31795079|ref|NP_857572.1| hypothetical protein Mb3936c [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=169
Score = 311 bits (797), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/169 (99%), Positives = 169/169 (100%), Gaps = 0/169 (0%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
+EYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF
Sbjct 1 MEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLD 120
DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLD
Sbjct 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLD 120
Query 121 TDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGASSL 169
TDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGASSL
Sbjct 121 TDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGASSL 169
>gi|183985440|ref|YP_001853731.1| hypothetical protein MMAR_5470 [Mycobacterium marinum M]
gi|183178766|gb|ACC43876.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=169
Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 129/169 (77%), Positives = 150/169 (89%), Gaps = 0/169 (0%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
++YCI G+DG+A IW RP D+DLDGDGRLDAIGLDLDGDG+RDDALADFDGD +ADH +F
Sbjct 1 MDYCIGGEDGTAAIWQRPPDLDLDGDGRLDAIGLDLDGDGMRDDALADFDGDGMADHGIF 60
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLD 120
D DNDGTPE+ F DDGSGTWAV +RGGQLRW+GLDGVEHTGGPLVDFDG G DD+L+D
Sbjct 61 DFDNDGTPEAVFTDDGSGTWAVGAERGGQLRWFGLDGVEHTGGPLVDFDGRGQADDQLID 120
Query 121 TDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGASSL 169
DG+G+ADR LC E+ +TGYVDTDGDG+WDVR+TD+DGDGTADGAS+L
Sbjct 121 ADGNGVADRALCPEEEGITGYVDTDGDGQWDVRITDSDGDGTADGASAL 169
>gi|289748444|ref|ZP_06507822.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T92]
gi|289689031|gb|EFD56460.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T92]
Length=164
Score = 239 bits (610), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 142/142 (100%), Positives = 142/142 (100%), Gaps = 0/142 (0%)
Query 28 RLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGSGTWAVAVDRG 87
RLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGSGTWAVAVDRG
Sbjct 23 RLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGSGTWAVAVDRG 82
Query 88 GQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRVLCAGEQRVTGYVDTDGD 147
GQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRVLCAGEQRVTGYVDTDGD
Sbjct 83 GQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRVLCAGEQRVTGYVDTDGD 142
Query 148 GRWDVRLTDTDGDGTADGASSL 169
GRWDVRLTDTDGDGTADGASSL
Sbjct 143 GRWDVRLTDTDGDGTADGASSL 164
>gi|240168386|ref|ZP_04747045.1| hypothetical protein MkanA1_03687 [Mycobacterium kansasii ATCC
12478]
Length=169
Score = 233 bits (595), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/154 (80%), Positives = 140/154 (91%), Gaps = 0/154 (0%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
++YC+ GDDG+A IW+R D+DLDGDGR DAIGLD+DGDG+ DDALADFDGD +ADHAV
Sbjct 1 MDYCLGGDDGTADIWSRAADLDLDGDGRFDAIGLDVDGDGMPDDALADFDGDGLADHAVL 60
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLD 120
DVDNDGT ESYF DDGSGTWAVA+DRGGQ+RW+GLDGVEHTGGPLVDFDG+G +DDRL+D
Sbjct 61 DVDNDGTAESYFTDDGSGTWAVALDRGGQVRWFGLDGVEHTGGPLVDFDGYGHVDDRLID 120
Query 121 TDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRL 154
+DGDGLADRVLCAG++ VT YVDTDGDG WDVRL
Sbjct 121 SDGDGLADRVLCAGDEGVTAYVDTDGDGHWDVRL 154
>gi|254823069|ref|ZP_05228070.1| hypothetical protein MintA_24285 [Mycobacterium intracellulare
ATCC 13950]
Length=169
Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/169 (76%), Positives = 148/169 (88%), Gaps = 0/169 (0%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
++YC+AGD+G+A IW+ D+DLDGDGR ++IG+D D DGLRDDALAD DGD + DHAV
Sbjct 1 MDYCLAGDNGAAAIWHGQPDLDLDGDGRFESIGMDFDHDGLRDDALADLDGDGLVDHAVL 60
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLD 120
DVDNDGTPE+YF DDGSGTWAVA+DRGGQLRW+GLDGVEHTGGPL+D DG G DDRLLD
Sbjct 61 DVDNDGTPEAYFTDDGSGTWAVAMDRGGQLRWFGLDGVEHTGGPLIDLDGHGRPDDRLLD 120
Query 121 TDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGASSL 169
TDGDGLADRVL + + VTGYVDTDGDG+W+VRLTD+DGDG ADGASSL
Sbjct 121 TDGDGLADRVLRSDDTGVTGYVDTDGDGKWNVRLTDSDGDGLADGASSL 169
>gi|41410429|ref|NP_963265.1| hypothetical protein MAP4331c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41399263|gb|AAS06881.1| hypothetical protein MAP_4331c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=169
Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/169 (76%), Positives = 145/169 (86%), Gaps = 0/169 (0%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
++YC+AGD G+A IW+ D+DLDGDGR ++IGLD D DGLRDDALAD DGD + DHAV
Sbjct 1 MDYCLAGDGGAAAIWHGQPDLDLDGDGRFESIGLDFDHDGLRDDALADLDGDGLVDHAVL 60
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLD 120
D+DNDGTPE+YF DDGSGTWAVAVDR GQLRW+GLDGVEHTGGP+VDFDG G D RL+D
Sbjct 61 DLDNDGTPEAYFTDDGSGTWAVAVDRNGQLRWFGLDGVEHTGGPMVDFDGHGRPDARLVD 120
Query 121 TDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGASSL 169
TDG+GLADRVL E VTGYVDTDGDG+W+VRLTDTDGDG ADGAS+L
Sbjct 121 TDGNGLADRVLRTDETGVTGYVDTDGDGKWNVRLTDTDGDGLADGASAL 169
>gi|254777640|ref|ZP_05219156.1| hypothetical protein MaviaA2_23626 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=169
Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/169 (76%), Positives = 145/169 (86%), Gaps = 0/169 (0%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
++YC+AGD G+A IW+ D+DLDGDGR ++IGLD D DGLRDDALAD DGD + DHAV
Sbjct 1 MDYCLAGDGGAAAIWHGQPDLDLDGDGRFESIGLDFDHDGLRDDALADLDGDGLVDHAVL 60
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLD 120
D+DNDGTPE+YF DDGSGTWAVAVDR GQLRW+GLDGVEHTGGP+VDFDG G D RL+D
Sbjct 61 DLDNDGTPEAYFTDDGSGTWAVAVDRTGQLRWFGLDGVEHTGGPMVDFDGHGRPDARLID 120
Query 121 TDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGASSL 169
TDG+GLADRVL E VTGYVDTDGDG+W+VRLTDTDGDG ADGAS+L
Sbjct 121 TDGNGLADRVLRTDETGVTGYVDTDGDGKWNVRLTDTDGDGLADGASAL 169
>gi|336459796|gb|EGO38710.1| hypothetical protein MAPs_46870 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=169
Score = 217 bits (552), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 126/169 (75%), Positives = 144/169 (86%), Gaps = 0/169 (0%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
++YC+AGD G+A IW+ D+DLDGDGR ++IGLD D DGLRDDALAD DGD + DHAV
Sbjct 1 MDYCLAGDGGAAAIWHGQPDLDLDGDGRFESIGLDFDHDGLRDDALADLDGDGLVDHAVL 60
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLD 120
D+DNDGTPE+YF DDGSGTWA AVDR GQLRW+GLDGVEHTGGP+VDFDG G D RL+D
Sbjct 61 DLDNDGTPEAYFTDDGSGTWAAAVDRNGQLRWFGLDGVEHTGGPMVDFDGHGRPDARLVD 120
Query 121 TDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGASSL 169
TDG+GLADRVL E VTGYVDTDGDG+W+VRLTDTDGDG ADGAS+L
Sbjct 121 TDGNGLADRVLRTDETGVTGYVDTDGDGKWNVRLTDTDGDGLADGASAL 169
>gi|118465581|ref|YP_884404.1| hypothetical protein MAV_5293 [Mycobacterium avium 104]
gi|118166868|gb|ABK67765.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=169
Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/169 (75%), Positives = 144/169 (86%), Gaps = 0/169 (0%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
++YC+AGD G+A IW+ D+DLDGDGR ++IGLD D DGLRDDALAD DGD + DHAV
Sbjct 1 MDYCLAGDGGAAAIWHGQPDLDLDGDGRFESIGLDFDHDGLRDDALADLDGDGLVDHAVL 60
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLD 120
D+DNDGTPE+YF DDGSGTWAVAVDR GQLRW+GLDGVEHTGGP+VDFDG G D RL+D
Sbjct 61 DLDNDGTPEAYFTDDGSGTWAVAVDRNGQLRWFGLDGVEHTGGPMVDFDGHGRPDARLVD 120
Query 121 TDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGASSL 169
TD +GLADRVL E VTGYVDTDGDG+W+VRLTDTDGDG ADGAS+L
Sbjct 121 TDDNGLADRVLRTDETGVTGYVDTDGDGKWNVRLTDTDGDGLADGASAL 169
>gi|342862332|ref|ZP_08718973.1| hypothetical protein MCOL_25698 [Mycobacterium colombiense CECT
3035]
gi|342130189|gb|EGT83517.1| hypothetical protein MCOL_25698 [Mycobacterium colombiense CECT
3035]
Length=169
Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/169 (73%), Positives = 145/169 (86%), Gaps = 0/169 (0%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
++YC+AGD G+A +W+ D+DLD DGR ++IGLD D DGLRDDALAD DGD + DHA+
Sbjct 1 MDYCLAGDSGAAALWHGQPDLDLDHDGRFESIGLDFDHDGLRDDALADLDGDGLVDHALL 60
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLD 120
D+DNDGTPE+YF DDGSGTWAVA+DRGGQLRW+GLDGVEHTGGP+VDFDG G D RL+D
Sbjct 61 DLDNDGTPEAYFTDDGSGTWAVAMDRGGQLRWFGLDGVEHTGGPMVDFDGHGRADARLVD 120
Query 121 TDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGASSL 169
TDG+GLADRVL + E VTGYVDTDGDG+W+VRLTD+DGDG ADGAS L
Sbjct 121 TDGNGLADRVLRSDETGVTGYVDTDGDGKWNVRLTDSDGDGLADGASPL 169
>gi|296167163|ref|ZP_06849570.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897485|gb|EFG77084.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=165
Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 127/165 (77%), Positives = 141/165 (86%), Gaps = 0/165 (0%)
Query 5 IAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDN 64
++GDDGSA IW+R D+DLDGDGRLDA GLD DGDGL DDA D DGD VADH V D+DN
Sbjct 1 MSGDDGSAEIWHRDLDLDLDGDGRLDAFGLDFDGDGLHDDAFVDLDGDGVADHVVLDLDN 60
Query 65 DGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGD 124
DGTPE+YF DDGSGTW VA D+G QLRW+GLDG EHTGGPLVDFDG G DDRL DTDGD
Sbjct 61 DGTPEAYFTDDGSGTWGVATDQGRQLRWFGLDGAEHTGGPLVDFDGQGRADDRLFDTDGD 120
Query 125 GLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGASSL 169
G+ADRVLCAG++ VTGYVDTDGDG+W+VRL+D DGDG ADGASSL
Sbjct 121 GVADRVLCAGDEGVTGYVDTDGDGKWNVRLSDGDGDGLADGASSL 165
>gi|108802355|ref|YP_642552.1| hypothetical protein Mmcs_5396 [Mycobacterium sp. MCS]
gi|119871508|ref|YP_941460.1| hypothetical protein Mkms_5485 [Mycobacterium sp. KMS]
gi|126438335|ref|YP_001074026.1| hypothetical protein Mjls_5772 [Mycobacterium sp. JLS]
gi|108772774|gb|ABG11496.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119697597|gb|ABL94670.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126238135|gb|ABO01536.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=165
Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/169 (60%), Positives = 124/169 (74%), Gaps = 4/169 (2%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
+EYC+ DGSA +W D D DGDG DA+ LDLDGDG DDALAD DGD +A+
Sbjct 1 MEYCLGDADGSATMWTAEPDADTDGDGVFDAVALDLDGDGRVDDALADRDGDGLAEVGAR 60
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLD 120
D+D+D E+Y DDG+GTW ++VDR GQ+RW+GLDGVEHTGGP+VD D G +DDRL+D
Sbjct 61 DLDDDDVAEAYVSDDGTGTWMLSVDRTGQVRWFGLDGVEHTGGPMVDLDADGQVDDRLVD 120
Query 121 TDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGASSL 169
+DG+GLADRV T +VDTDGDGRWDVRL+D DGDG AD A+ +
Sbjct 121 SDGNGLADRVFSGD----TAHVDTDGDGRWDVRLSDGDGDGRADAATGM 165
>gi|333992970|ref|YP_004525584.1| hypothetical protein JDM601_4330 [Mycobacterium sp. JDM601]
gi|333488938|gb|AEF38330.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=176
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/162 (62%), Positives = 119/162 (74%), Gaps = 9/162 (5%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
++YC+ DG+A +W+ P D+DLDGDG DAI LD DGDGL+DDAL D DGD VADH +
Sbjct 1 MDYCLGDGDGAATMWSGPPDLDLDGDGVADAIALDFDGDGLQDDALVDLDGDGVADHLML 60
Query 61 DVDNDGTPESYFIDDGSGTW-----AVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLD 115
D+D+DG PE+ F DDGSGTW A + DR G LRW GLD EH GGPLVDFDG G ++
Sbjct 61 DLDDDGAPEASFTDDGSGTWGHGVAAGSADRSGGLRWSGLDDAEHLGGPLVDFDGDGRIN 120
Query 116 DRLLDTDGDGLADRVLC---AGEQRVTGYVDTDGDGRWDVRL 154
DRLLD+DGDG ADRVL +G R YVDTDGDGRWD++L
Sbjct 121 DRLLDSDGDGRADRVLIGDGSGGYRAA-YVDTDGDGRWDIKL 161
>gi|118471202|ref|YP_891119.1| hypothetical protein MSMEG_6925 [Mycobacterium smegmatis str.
MC2 155]
gi|118172489|gb|ABK73385.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=165
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/171 (60%), Positives = 124/171 (73%), Gaps = 8/171 (4%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
++YC+ DG+A +W P +D DGDG D +GLD DGDG DD LAD D D VADH +
Sbjct 1 MDYCLGDPDGTATMWTAPPAIDTDGDGVPDGVGLDFDGDGRTDDVLADLDDDGVADHLLR 60
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTG--GPLVDFDGFGGLDDRL 118
D+D+DG ESY+ DDGSG WAV+VDR Q+RW+GLDGVE+T G LVDFD G +DDRL
Sbjct 61 DLDDDGHAESYYTDDGSGMWAVSVDR--QIRWFGLDGVENTSSTGVLVDFDADGAVDDRL 118
Query 119 LDTDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGASSL 169
+DTDGDGLAD+V G + +VDTD DGRWD+RL D+DGDG AD A+ L
Sbjct 119 VDTDGDGLADQVHSDG----SAHVDTDRDGRWDLRLVDSDGDGRADSAAPL 165
>gi|169632005|ref|YP_001705654.1| hypothetical protein MAB_4932c [Mycobacterium abscessus ATCC
19977]
gi|169243972|emb|CAM65000.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=182
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/169 (54%), Positives = 111/169 (66%), Gaps = 2/169 (1%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
++YC DG W+ P +VDLDGDG +DA+ LD DGDGL DD + D DGD ADH+V
Sbjct 1 MDYCFGAGDGVVTAWDAPPNVDLDGDGVMDAVRLDFDGDGLFDDMMWDADGDGSADHSVL 60
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLD 120
D+DNDG PE+YF DDG GTW V+R G + W+GLDG+EH GG D DG G D+L D
Sbjct 61 DIDNDGRPETYFTDDGLGTWRFHVERSGSISWFGLDGMEHPGG-TADIDG-DGKPDQLFD 118
Query 121 TDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGASSL 169
DGDG A+R + + Y DT GDGRWDV LTD DGDG A+ A +
Sbjct 119 VDGDGDAERAFSTTDSGNSVYADTTGDGRWDVVLTDGDGDGIAEAARPV 167
>gi|120406989|ref|YP_956818.1| hypothetical protein Mvan_6060 [Mycobacterium vanbaalenii PYR-1]
gi|119959807|gb|ABM16812.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=165
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/155 (61%), Positives = 108/155 (70%), Gaps = 6/155 (3%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
+EYC+ DGSA +W D DLDGDG DA+GLDLD DG+ DD LADFDGD ADHA
Sbjct 1 MEYCLGDADGSATMWTAGPDSDLDGDGVPDAVGLDLDDDGVIDDVLADFDGDGTADHAAR 60
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPL-VDFDGFGGLDDRLL 119
D+D DG PE+YF DDG+GTW VA DRG LRW+GLDGVEH D DG G +RL+
Sbjct 61 DLDGDGIPEAYFTDDGTGTWTVAADRGAALRWFGLDGVEHPAASAPADLDGDGD-QERLV 119
Query 120 DTDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRL 154
D DGDG+ADR G+ +VDTDGDGRWDVRL
Sbjct 120 DGDGDGVADRAFGTGQA----WVDTDGDGRWDVRL 150
>gi|216781|dbj|BAA03283.1| AT9S [Mycobacterium tuberculosis]
Length=155
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/103 (79%), Positives = 83/103 (81%), Gaps = 1/103 (0%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
VEYCIAGDDGSAGIWNRPFDV+LDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF
Sbjct 44 VEYCIAGDDGSAGIWNRPFDVNLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 103
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGG 103
DVDNDGTPESYFID GTW DG+E TG
Sbjct 104 DVDNDGTPESYFIDT-IGTWRSPSTAADNCAGMASDGLEQTGA 145
>gi|315446808|ref|YP_004079687.1| hypothetical protein Mspyr1_53280 [Mycobacterium sp. Spyr1]
gi|315265111|gb|ADU01853.1| hypothetical protein Mspyr1_53280 [Mycobacterium sp. Spyr1]
Length=167
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/156 (59%), Positives = 108/156 (70%), Gaps = 7/156 (4%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
+EYC++ DG+A +W D DLDGDG DA+ LDLD DG+ DDAL D D D ADHA
Sbjct 1 MEYCLSDLDGTATVWTAGPDTDLDGDGVFDAVALDLDDDGVIDDALLDLDDDGTADHAAR 60
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDR-GGQLRWYGLDGVEHTGGP-LVDFDGFGGLDDRL 118
D+D DGTPE+YF DDG+G W+V+ DR G LRW+GLDGVEH D DG G +RL
Sbjct 61 DLDGDGTPEAYFTDDGTGAWSVSADRIGAALRWFGLDGVEHPASADAADLDG-DGAPERL 119
Query 119 LDTDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRL 154
DT+GDGLADR AG+ +VDTDGDGRWDVRL
Sbjct 120 ADTNGDGLADRAFGAGQA----WVDTDGDGRWDVRL 151
>gi|145221440|ref|YP_001132118.1| hypothetical protein Mflv_0846 [Mycobacterium gilvum PYR-GCK]
gi|145213926|gb|ABP43330.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=154
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/143 (60%), Positives = 98/143 (69%), Gaps = 7/143 (4%)
Query 14 IWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFI 73
+W D DLDGDG DA+ LDLD DG+ DDAL D D D ADHA D+D DGTPE+YF
Sbjct 1 MWTAGPDTDLDGDGVFDAVALDLDDDGVIDDALLDLDDDGTADHAARDLDGDGTPEAYFT 60
Query 74 DDGSGTWAVAVDR-GGQLRWYGLDGVEHTGGP-LVDFDGFGGLDDRLLDTDGDGLADRVL 131
DDG+G W+V+ DR G LRW+GLDGVEH D DG G +RL DT+GDGLADR
Sbjct 61 DDGTGAWSVSADRIGAALRWFGLDGVEHPASADAADLDG-DGAPERLADTNGDGLADRAF 119
Query 132 CAGEQRVTGYVDTDGDGRWDVRL 154
AG+ +VDTDGDGRWDVRL
Sbjct 120 GAGQA----WVDTDGDGRWDVRL 138
>gi|325677337|ref|ZP_08157002.1| hypothetical protein HMPREF0724_14785 [Rhodococcus equi ATCC
33707]
gi|325551800|gb|EGD21497.1| hypothetical protein HMPREF0724_14785 [Rhodococcus equi ATCC
33707]
Length=179
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/173 (44%), Positives = 94/173 (55%), Gaps = 23/173 (13%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
+EY DG+ W P D+D+D DG LDA+ LD DGDGL DDA+ D DGD ADHAV
Sbjct 14 LEYWFGTGDGATTTWTSPADLDIDADGGLDAVRLDFDGDGLVDDAMWDSDGDGSADHAVL 73
Query 61 DVDNDGTPES-YFIDDG-SGTWAVAVDRGGQLRWYGLDGVEHTGGPL----VDFDGFGGL 114
DV G PE+ YF+D +G WA + + E +G P VDFDG G
Sbjct 74 DV---GAPEARYFVDPARNGLWARQIPQ-----------PEPSGPPQGWGRVDFDGDGER 119
Query 115 DDRLLDTDGDGLADRVLCA---GEQRVTGYVDTDGDGRWDVRLTDTDGDGTAD 164
DD +D DGDG D VL A + T +V + R +RL+D+DGDG D
Sbjct 120 DDASVDADGDGTPDYVLVATRDSSRYDTLFVAEEEPERMSMRLSDSDGDGRLD 172
>gi|312142000|ref|YP_004009336.1| hypothetical protein REQ_47180 [Rhodococcus equi 103S]
gi|311891339|emb|CBH50660.1| conserved hypothetical protein [Rhodococcus equi 103S]
Length=156
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/160 (45%), Positives = 88/160 (55%), Gaps = 23/160 (14%)
Query 14 IWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPES-YF 72
W P D+D+D DG LDA+ LD DGDGL DDA+ D DGD ADHAV DV G PE+ YF
Sbjct 4 TWTSPADLDIDADGGLDAVRLDFDGDGLVDDAMWDSDGDGSADHAVLDV---GAPEARYF 60
Query 73 IDDG-SGTWAVAVDRGGQLRWYGLDGVEHTGGPL----VDFDGFGGLDDRLLDTDGDGLA 127
+D +G WA + + E +G P VDFDG G DD +D DGDG
Sbjct 61 VDPARNGLWARQIPQ-----------PEPSGPPQGWGRVDFDGDGERDDASVDADGDGTP 109
Query 128 DRVLCA---GEQRVTGYVDTDGDGRWDVRLTDTDGDGTAD 164
D VL A + T +V + R +RL+D+DGDG D
Sbjct 110 DYVLVATRDSSRYDTLFVAEEEPERMSMRLSDSDGDGRLD 149
>gi|343928705|ref|ZP_08768150.1| hypothetical protein GOALK_120_01330 [Gordonia alkanivorans NBRC
16433]
gi|343761454|dbj|GAA15076.1| hypothetical protein GOALK_120_01330 [Gordonia alkanivorans NBRC
16433]
Length=185
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/172 (45%), Positives = 91/172 (53%), Gaps = 10/172 (5%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
+EY DGS W+ P D L GD DA+ LD DGDG RDDA+ D DGD +AD A
Sbjct 5 IEYFFGPGDGSTTRWSTPADTAL-GDSGPDAVRLDFDGDGRRDDAMWDTDGDGIADVAAL 63
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFG-GLDDRLL 119
D D DG P++++ D G+G W AVDR G + G G P D G G D L
Sbjct 64 DTDEDGEPDAFYRDSGAGLWDRAVDRVGVV---GESGSPEARSPEADGSGEPDGPRDLRL 120
Query 120 DTDGDGLADRVLCAGEQ--RVTG---YVDTDGDGRWDVRLTDTDGDGTADGA 166
D D DG D L E+ R+T YVD DGDG D L D +GDG AD A
Sbjct 121 DLDADGSTDLELVGAEKGGRLTAERLYVDADGDGVTDTVLVDLNGDGVADAA 172
>gi|326383883|ref|ZP_08205567.1| hypothetical protein SCNU_13158 [Gordonia neofelifaecis NRRL
B-59395]
gi|326197342|gb|EGD54532.1| hypothetical protein SCNU_13158 [Gordonia neofelifaecis NRRL
B-59395]
Length=145
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/144 (40%), Positives = 71/144 (50%), Gaps = 8/144 (5%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
+EY DG+ W D+DLDGDG +++ LD DGDGL DDA+ D D D VAD
Sbjct 5 IEYFFGTGDGTMSQWRSTADLDLDGDGVPESVALDFDGDGLIDDAMTDTDHDGVADLVAL 64
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPL-VDFDGFGGLDDRLL 119
D+D+DG PES + D G G W A V T + +D D G D L+
Sbjct 65 DLDDDGVPESRYTDSGRGLWDTA-------SAPDTPAVPPTPREVALDSDDDGTPDTVLI 117
Query 120 DTDGDGLADRVLCAGEQRVTGYVD 143
D DGDG AD G TG +
Sbjct 118 DADGDGFADSYREIGSGSRTGSAE 141
>gi|260579695|ref|ZP_05847555.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
43734]
gi|258602170|gb|EEW15487.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
43734]
Length=426
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/147 (37%), Positives = 70/147 (48%), Gaps = 25/147 (17%)
Query 22 DLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGSGTWA 81
D +GDG+ DA +D++GDG D + D DGD V D A D D DG ++ + D
Sbjct 52 DTNGDGKEDAFQVDINGDGRPDGTVYDKDGDKVTDRAEMDYDQDGIVDTVYED------- 104
Query 82 VAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRVLC----AGEQR 137
+DR G + +D G LD + D DGDG+ D V G
Sbjct 105 --IDRDGVIDHMSVDTTND-----------GKLDTKATDYDGDGVTDNVKIDSNGDGNHD 151
Query 138 VTGYVDTDGDGRWDVRLTDTDGDGTAD 164
VT Y D DGDG+ D DTDGDG +D
Sbjct 152 VTAY-DFDGDGKVDSVAYDTDGDGISD 177
Score = 41.6 bits (96), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 0/50 (0%)
Query 21 VDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPES 70
VD DGDG++D +D D DG D+AL D D D + D V D DNDG ES
Sbjct 343 VDTDGDGQVDERHVDTDADGFTDEALLDTDFDGIGDTKVHDYDNDGVYES 392
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/80 (42%), Positives = 38/80 (48%), Gaps = 3/80 (3%)
Query 90 LRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRV---LCAGEQRVTGYVDTDG 146
L+ G GG VD DG G D DT+ DG D + Q T +VDTDG
Sbjct 288 LQSAGAGNAAPNGGEYVDLDGDGLADGVAYDTNNDGQIDALEIDTTGDNQTDTVFVDTDG 347
Query 147 DGRWDVRLTDTDGDGTADGA 166
DG+ D R DTD DG D A
Sbjct 348 DGQVDERHVDTDADGFTDEA 367
Score = 38.1 bits (87), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/122 (32%), Positives = 51/122 (42%), Gaps = 30/122 (24%)
Query 48 DFDGDDVADHAVFDVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVD 107
D DGD +AD +D +NDG ++ ID G T VD
Sbjct 305 DLDGDGLADGVAYDTNNDGQIDALEID--------------------TTGDNQTDTVFVD 344
Query 108 FDGFGGLDDRLLDTDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGAS 167
DG G +D+R +DTD DG D L +DTD DG D ++ D D DG + +
Sbjct 345 TDGDGQVDERHVDTDADGFTDEAL----------LDTDFDGIGDTKVHDYDNDGVYESSE 394
Query 168 SL 169
Sbjct 395 ET 396
Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/46 (44%), Positives = 27/46 (59%), Gaps = 0/46 (0%)
Query 21 VDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDG 66
+D +GDG D D DGDG D D DGD ++D++ FD D +G
Sbjct 142 IDSNGDGNHDVTAYDFDGDGKVDSVAYDTDGDGISDYSEFDHDENG 187
>gi|68535560|ref|YP_250265.1| hypothetical protein jk0490 [Corynebacterium jeikeium K411]
gi|68263159|emb|CAI36647.1| hypothetical protein jk0490 [Corynebacterium jeikeium K411]
Length=421
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/147 (37%), Positives = 70/147 (48%), Gaps = 25/147 (17%)
Query 22 DLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGSGTWA 81
D +GDG+ DA +D++GDG D + D DGD V D A D D DG ++ + D
Sbjct 52 DTNGDGKEDAFQVDINGDGRPDGTVYDKDGDKVTDRAEMDYDQDGIVDTVYED------- 104
Query 82 VAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRVLC----AGEQR 137
+DR G + +D G LD + D DGDG+ D V G
Sbjct 105 --IDRDGVIDHMSVDTTND-----------GKLDTKATDYDGDGVTDNVKIDSNGDGNHD 151
Query 138 VTGYVDTDGDGRWDVRLTDTDGDGTAD 164
VT Y D DGDG+ D DTDGDG +D
Sbjct 152 VTAY-DFDGDGKVDSVAYDTDGDGISD 177
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 0/50 (0%)
Query 21 VDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPES 70
VD DGDG++D +D D DG D+AL D D D + D V D DNDG ES
Sbjct 338 VDTDGDGQVDERHVDTDADGFTDEALLDTDFDGIGDTKVHDYDNDGVYES 387
Score = 40.8 bits (94), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/80 (42%), Positives = 39/80 (49%), Gaps = 3/80 (3%)
Query 90 LRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRV---LCAGEQRVTGYVDTDG 146
L+ G GG VD DG G D DT+ DG D + +Q T +VDTDG
Sbjct 283 LQSAGAGNAAPNGGEYVDLDGDGLADGVAYDTNNDGQIDALEIDTTGNDQTDTVFVDTDG 342
Query 147 DGRWDVRLTDTDGDGTADGA 166
DG+ D R DTD DG D A
Sbjct 343 DGQVDERHVDTDADGFTDEA 362
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/122 (32%), Positives = 52/122 (43%), Gaps = 30/122 (24%)
Query 48 DFDGDDVADHAVFDVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVD 107
D DGD +AD +D +NDG ++ ID G + T VD
Sbjct 300 DLDGDGLADGVAYDTNNDGQIDALEID--------------------TTGNDQTDTVFVD 339
Query 108 FDGFGGLDDRLLDTDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGAS 167
DG G +D+R +DTD DG D L +DTD DG D ++ D D DG + +
Sbjct 340 TDGDGQVDERHVDTDADGFTDEAL----------LDTDFDGIGDTKVHDYDNDGVYESSE 389
Query 168 SL 169
Sbjct 390 ET 391
Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/46 (44%), Positives = 27/46 (59%), Gaps = 0/46 (0%)
Query 21 VDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDG 66
+D +GDG D D DGDG D D DGD ++D++ FD D +G
Sbjct 142 IDSNGDGNHDVTAYDFDGDGKVDSVAYDTDGDGISDYSEFDHDENG 187
>gi|262204633|ref|YP_003275841.1| hypothetical protein Gbro_4835 [Gordonia bronchialis DSM 43247]
gi|262087980|gb|ACY23948.1| hypothetical protein Gbro_4835 [Gordonia bronchialis DSM 43247]
Length=183
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/172 (44%), Positives = 87/172 (51%), Gaps = 9/172 (5%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
+EY DGS W D DL+ DG DA+ LD DGDG RDDA+ D DGD VAD +V
Sbjct 5 IEYLFGPGDGSTTTWTSVADADLNHDGIPDAVLLDFDGDGRRDDAMWDTDGDGVADVSVL 64
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGG-QLRWYGLDGVEHTGGPLVDFDGFGGLDDRLL 119
D+D+DG +++F D G G W V+R G G G D L
Sbjct 65 DLDDDGEYDAFFRDGGKGLWDSRVEREGLDTGPRQPPPRHPPPGQPPPSSPDTGAD---L 121
Query 120 DTDGDGLADRVL--CAGEQRVTG---YVDTDGDGRWDVRLTDTDGDGTADGA 166
D DGDG D L AG R+T YVD DGDG +D L D DGDG AD
Sbjct 122 DIDGDGQVDARLEGPAGSGRITPDRLYVDVDGDGHFDHVLVDLDGDGRADAC 173
>gi|300780655|ref|ZP_07090510.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
gi|300533641|gb|EFK54701.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
Length=407
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/150 (38%), Positives = 67/150 (45%), Gaps = 21/150 (14%)
Query 19 FDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDG-TPESYFIDDGS 77
F D+DGDG + D DGDG + DFDGD D+A D + DG T +F DG
Sbjct 64 FHADMDGDGVAETRIFDRDGDGNVERVEVDFDGDGAPDYAAQDTNRDGQTDVEHFDTDGD 123
Query 78 GTWAVAVDRGGQLRW-YGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRVLCAGEQ 136
G V + + + D VE D DG G +D R DTD DG D
Sbjct 124 GIMDTTV---RDVNYDHQADSVE------FDTDGDGEMDTRFSDTDKDGKLDSFA----- 169
Query 137 RVTGYVDTDGDGRWDVRLTDTDGDGTADGA 166
DTDGDG+ D R D DGDG D
Sbjct 170 -----FDTDGDGQMDYREYDFDGDGQIDST 194
Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 46/124 (38%), Positives = 59/124 (48%), Gaps = 30/124 (24%)
Query 46 LADFDGDDVADHAVFDVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPL 105
+ D DGD AD V+D +NDG ID A+ VD G DG+ T
Sbjct 290 VVDLDGDGYADAIVYDTNNDGE-----ID------AMEVDSDG-------DGITDT--LF 329
Query 106 VDFDGFGGLDDRLLDTDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADG 165
VD D G +D++ DTDGDG+ D + +D DGDG D LTDT GDG D
Sbjct 330 VDSDFDGKVDEQHSDTDGDGITDEAI----------IDVDGDGYGDSLLTDTTGDGYYDT 379
Query 166 ASSL 169
++
Sbjct 380 EEAI 383
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/56 (45%), Positives = 33/56 (59%), Gaps = 0/56 (0%)
Query 19 FDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFID 74
+VD DGDG D + +D D DG D+ +D DGD + D A+ DVD DG +S D
Sbjct 315 MEVDSDGDGITDTLFVDSDFDGKVDEQHSDTDGDGITDEAIIDVDGDGYGDSLLTD 370
>gi|119486122|ref|ZP_01620182.1| hypothetical protein L8106_17302 [Lyngbya sp. PCC 8106]
gi|119456613|gb|EAW37742.1| hypothetical protein L8106_17302 [Lyngbya sp. PCC 8106]
Length=2572
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/175 (37%), Positives = 78/175 (45%), Gaps = 33/175 (18%)
Query 21 VDLDGDGRLDAIGLDLDGDGLRDD----------ALADFDGDDVADHAVFDVDNDGTPES 70
D DGDG +D +D DGDGL D + D D D VAD D DNDG S
Sbjct 1435 TDTDGDGLIDGANIDTDGDGLADAVDPDNGGTAVTIPDIDNDGVADFRDLDSDNDGI--S 1492
Query 71 YFIDDGSGTWAVAVDRGGQLRWYGLDG------VEHTGG-------PLVDFDGFGGLDDR 117
I+ G V D G + DG ++ G PL D DG G D +
Sbjct 1493 DLIEGGQDPAVVDTDGNGIVDGSDSDGDGILDVIDENDGFSDANNDPLPDADGDGTPDYQ 1552
Query 118 LLDTDGDGLADRV---LCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGASSL 169
+D++ DG DRV L GE G D DGDG+ D TD+DGDG D +L
Sbjct 1553 EIDSNNDGTPDRVEAGLPTGE----GTPDVDGDGQID-DPTDSDGDGVPDSIDTL 1602
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/147 (35%), Positives = 65/147 (45%), Gaps = 16/147 (10%)
Query 22 DLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGT--PESYFIDDGSGT 79
D DGDG + + LD D DG+ D + D + D D DG P + F ++G
Sbjct 1753 DKDGDGIPNVLDLDSDNDGIPDLYESGLPLDQASQ---LDTDGDGVIDPTNDFGNNGFAD 1809
Query 80 WAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRVLCAGEQRVT 139
GQ+ + G DG T VD D D + LD+D DG+ D + G
Sbjct 1810 SIENPPESGQVDYNG-DGQPDTP---VDTDSDNTSDFQDLDSDNDGINDVIEAGG----- 1860
Query 140 GYVDTDGDGRWDVRLTDTDGDGTADGA 166
DTD DG D TDTDGDG AD
Sbjct 1861 --TDTDNDGLIDGANTDTDGDGLADSV 1885
>gi|54027624|ref|YP_121866.1| hypothetical protein nfa56500 [Nocardia farcinica IFM 10152]
gi|54019132|dbj|BAD60502.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=112
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/71 (40%), Positives = 37/71 (53%), Gaps = 7/71 (9%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
+ Y DG W+ P D+DL G G LDA+ LD DGDGL DDAL + G+ +
Sbjct 13 IGYSFGTGDGEVHHWSSPADLDLAGTGALDAVCLDFDGDGLADDALWETGGE-------Y 65
Query 61 DVDNDGTPESY 71
V G P+ +
Sbjct 66 PVPQAGPPDGF 76
>gi|225020985|ref|ZP_03710177.1| hypothetical protein CORMATOL_00996 [Corynebacterium matruchotii
ATCC 33806]
gi|224946262|gb|EEG27471.1| hypothetical protein CORMATOL_00996 [Corynebacterium matruchotii
ATCC 33806]
Length=385
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/153 (34%), Positives = 68/153 (45%), Gaps = 16/153 (10%)
Query 21 VDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGSGTW 80
VD D DG+ D +D DGDG D + D + D D +D D+DG ++ D+
Sbjct 34 VDSDADGKTDTYSVDTDGDGFADAQVVDSNEDGKIDSIDYDTDHDGVVNAHLQDN----- 88
Query 81 AVAVDRGGQLRWYGLDGVEHTGG---PLVDFDGFGGLDDRLLDTDGDGLAD-RVLCAGEQ 136
D G++ D H G + D D G +D + +DTDGDG D +
Sbjct 89 ----DNDGRIDEASFD-TNHDGKLDTTIEDQDRDGDMDVKQIDTDGDGQPDVEIRDTNND 143
Query 137 RVTGYV--DTDGDGRWDVRLTDTDGDGTADGAS 167
+T V DTDGDG D D D DG D S
Sbjct 144 GITDSVAYDTDGDGVSDYHEYDNDRDGVVDSTS 176
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 52/151 (35%), Positives = 65/151 (44%), Gaps = 30/151 (19%)
Query 18 PFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGS 77
FD+DLD DG DA+ D + DG D+ D + D + D D + DG +
Sbjct 228 AFDIDLDHDGFNDAVAADHNNDGHMDEVSVDLNHDGITDVTYTDTNFDGHADQ------- 280
Query 78 GTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRVLCAGEQR 137
VA D G DGV +FDG +D + DTDGDG D +L
Sbjct 281 ----VAYDTNG-------DGVADRINIDDNFDGR--VDVQHQDTDGDGHIDTIL------ 321
Query 138 VTGYVDTDGDGRWDVRLTDTDGDGTADGASS 168
VD D DG D TD DGDG D S+
Sbjct 322 ----VDQDHDGYADGMFTDADGDGMIDDFSA 348
>gi|305680015|ref|ZP_07402825.1| thrombospondin type 3 repeat protein [Corynebacterium matruchotii
ATCC 14266]
gi|305660635|gb|EFM50132.1| thrombospondin type 3 repeat protein [Corynebacterium matruchotii
ATCC 14266]
Length=385
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/153 (34%), Positives = 68/153 (45%), Gaps = 16/153 (10%)
Query 21 VDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGSGTW 80
VD D DG+ D +D DGDG D + D + D D +D D+DG ++ D+
Sbjct 34 VDSDADGKTDTYSVDTDGDGFADAQVVDSNEDGKIDSIDYDTDHDGVVNAHLQDN----- 88
Query 81 AVAVDRGGQLRWYGLDGVEHTGG---PLVDFDGFGGLDDRLLDTDGDGLAD-RVLCAGEQ 136
D G++ D H G + D D G +D + +DTDGDG D +
Sbjct 89 ----DNDGRIDEASFD-TNHDGKLDTTIEDQDRDGDMDVKQIDTDGDGQPDVEIRDTNND 143
Query 137 RVTGYV--DTDGDGRWDVRLTDTDGDGTADGAS 167
+T V DTDGDG D D D DG D S
Sbjct 144 GITDSVAYDTDGDGVSDYHEYDNDRDGVVDSTS 176
Score = 38.5 bits (88), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 52/151 (35%), Positives = 65/151 (44%), Gaps = 30/151 (19%)
Query 18 PFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGS 77
FD+DLD DG DA+ D + DG D+ D + D + D D + DG +
Sbjct 228 AFDIDLDHDGFNDAVAADHNNDGHMDEVSVDLNHDGITDVTYTDTNFDGHADQ------- 280
Query 78 GTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRVLCAGEQR 137
VA D G DGV +FDG +D + DTDGDG D +L
Sbjct 281 ----VAYDTNG-------DGVADRINIDDNFDGR--VDVQHQDTDGDGHIDTIL------ 321
Query 138 VTGYVDTDGDGRWDVRLTDTDGDGTADGASS 168
VD D DG D TD DGDG D S+
Sbjct 322 ----VDQDHDGYADGMFTDADGDGMIDDFSA 348
>gi|291298550|ref|YP_003509828.1| hypothetical protein Snas_1025 [Stackebrandtia nassauensis DSM
44728]
gi|290567770|gb|ADD40735.1| hypothetical protein Snas_1025 [Stackebrandtia nassauensis DSM
44728]
Length=197
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/55 (50%), Positives = 31/55 (57%), Gaps = 0/55 (0%)
Query 20 DVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFID 74
D D DGD +D + D DGDG D + D + D VAD D D DGTPES F D
Sbjct 115 DADGDGDNAIDTVQTDTDGDGTMDTTVQDTNLDGVADTTTIDADADGTPESTFTD 169
Score = 38.9 bits (89), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/136 (33%), Positives = 66/136 (49%), Gaps = 24/136 (17%)
Query 34 LDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWY 93
+D++GDG+ D+ + DG +D +NDG ++ DDGS + +D G
Sbjct 35 VDINGDGVYDEGMETDDG------TAYDTNNDGVADALVTDDGS----LLMDSDGN---- 80
Query 94 GLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRVLCA----GEQRV-TGYVDTDGDG 148
G+ T + D DG G D +D + DG+ D+V G+ + T DTDGDG
Sbjct 81 ---GIYDT--QMTDADGNGVYDTAEMDLNEDGVVDQVATDADGDGDNAIDTVQTDTDGDG 135
Query 149 RWDVRLTDTDGDGTAD 164
D + DT+ DG AD
Sbjct 136 TMDTTVQDTNLDGVAD 151
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/132 (33%), Positives = 61/132 (47%), Gaps = 30/132 (22%)
Query 34 LDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFID-DGSGTWAVAVDRGGQLRW 92
+D DG+G+ D + D DG+ V D A D++ DG + D DG G A+
Sbjct 75 MDSDGNGIYDTQMTDADGNGVYDTAEMDLNEDGVVDQVATDADGDGDNAI---------- 124
Query 93 YGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRVLCAGEQRVTGYVDTDGDGRWDV 152
D V+ D DG G +D + DT+ DG+AD T +D D DG +
Sbjct 125 ---DTVQ------TDTDGDGTMDTTVQDTNLDGVAD----------TTTIDADADGTPES 165
Query 153 RLTDTDGDGTAD 164
TD++ DG AD
Sbjct 166 TFTDSNADGVAD 177
>gi|262201137|ref|YP_003272345.1| hypothetical protein Gbro_1144 [Gordonia bronchialis DSM 43247]
gi|262084484|gb|ACY20452.1| hypothetical protein Gbro_1144 [Gordonia bronchialis DSM 43247]
Length=95
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/142 (35%), Positives = 60/142 (43%), Gaps = 58/142 (40%)
Query 21 VDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGSGTW 80
+D+DG+G +DAIG D DGDG D V DVD DG E +
Sbjct 6 IDIDGNGTIDAIGEDYDGDG-------------TIDGLVTDVDGDGLAEVSY-------- 44
Query 81 AVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRL-LDTDGDGLADRVLCAGEQRVT 139
D DG G DD + DTDGDG+AD
Sbjct 45 --------------------------DLDGDGEFDDGIAFDTDGDGVAD----------I 68
Query 140 GYVDTDGDGRWDVRLTDTDGDG 161
G DT+GDG +D ++TDTDGDG
Sbjct 69 GTFDTNGDGEYDTQVTDTDGDG 90
>gi|76155286|gb|AAX26546.2| SJCHGC03872 protein [Schistosoma japonicum]
Length=217
Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 55/159 (35%), Positives = 75/159 (48%), Gaps = 19/159 (11%)
Query 18 PFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGS 77
P +D DGDG D + D DGDG+ D L D DGD + D+ + D D DG P +++
Sbjct 29 PRQIDKDGDGIPDHLEGDSDGDGIP-DHLEDEDGDGIPDY-LEDDDGDGIPN--YLEKRH 84
Query 78 GTWAVAVDRGGQLRWYGLDGVEHTGG---------PLVDFDGFGGLDDRLLDTDGDGLAD 128
A + R G+ +H G L D DG G+ D L D DGDG+ +
Sbjct 85 DHRATKIPRHIDKDGDGI--PDHLEGDSDGDGIPDHLEDEDG-DGIPDYLEDDDGDGIPN 141
Query 129 RVLCAGEQRVTG---YVDTDGDGRWDVRLTDTDGDGTAD 164
+ + R T ++D DGDG D D+DGDG D
Sbjct 142 YLEKRHDHRATKIPRHIDKDGDGIPDHLEGDSDGDGIPD 180
>gi|336324987|ref|YP_004604953.1| hypothetical protein CRES_0426 [Corynebacterium resistens DSM
45100]
gi|336100969|gb|AEI08789.1| hypothetical protein CRES_0426 [Corynebacterium resistens DSM
45100]
Length=383
Score = 41.2 bits (95), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 48/149 (33%), Positives = 61/149 (41%), Gaps = 43/149 (28%)
Query 19 FDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGSG 78
F VDL+ DGR DA D D DG D D DGD V D + ++G
Sbjct 55 FQVDLNNDGRADATVYDKDEDGKVDRVEMDRDGDSVTDTVMTSTTDNGR----------- 103
Query 79 TWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRVLCAGEQRV 138
L+ VE D + G LD R DT+ DG D+V
Sbjct 104 ----------------LNQVE------KDTNNDGRLDTRGRDTNDDGKIDKVE------- 134
Query 139 TGYVDTDGDGRWDVRLTDTDGDGTADGAS 167
+DTDGDG+ DV++ D + DG D S
Sbjct 135 ---MDTDGDGKADVKVEDYNADGRVDHIS 160
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 59/212 (28%), Positives = 78/212 (37%), Gaps = 67/212 (31%)
Query 22 DLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFID------- 74
D + DG++D + +D DGDG D + D++ D DH +DVD DGT + D
Sbjct 123 DTNDDGKIDKVEMDTDGDGKADVKVEDYNADGRVDHISYDVDGDGTTDYREADTNYNGKV 182
Query 75 -----DGSGTWA--VAVDR--------GGQLRWYGLDGVEHTGGP--------------- 104
DG+ T A AVDR G Q + + P
Sbjct 183 DLTHGDGAPTAAQQAAVDRVTGTNPAQGSQDQAHPAPNAAQPEAPKQDDKAADKDDKTAA 242
Query 105 ---------------------------LVDFDGFGGLDDRLLDTDGDGLADRVL--CAGE 135
VD DG G D DT+ DG D + G+
Sbjct 243 QDDKAASHGQDQATQPAADHQTPQGGTKVDLDGDGLADGIAYDTNHDGRTDMLELDSNGD 302
Query 136 QRV-TGYVDTDGDGRWDVRLTDTDGDGTADGA 166
R T VD++ DGR D D DGDG +D A
Sbjct 303 HRTDTMLVDSNHDGRVDQVHVDLDGDGKSDRA 334
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/46 (46%), Positives = 30/46 (66%), Gaps = 0/46 (0%)
Query 21 VDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDG 66
VD + DGR+D + +DLDGDG D A+ D D D AD +D +++G
Sbjct 310 VDSNHDGRVDQVHVDLDGDGKSDRAMFDNDYDGYADQVQYDSNHNG 355
>gi|256092506|ref|XP_002581967.1| hypothetical protein [Schistosoma mansoni]
gi|238668349|emb|CAZ38207.1| hypothetical protein Smp_186850 [Schistosoma mansoni]
Length=214
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 54/156 (35%), Positives = 77/156 (50%), Gaps = 13/156 (8%)
Query 18 PFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGS 77
P +D DGDG D + D DGDG+ D D DGD + D+ + D D DG P +++
Sbjct 49 PKHIDRDGDGIPDHLEGDSDGDGIPD-HQEDEDGDGIPDY-LEDDDGDGIPN--YLETSH 104
Query 78 GTWAVA----VDRGGQLRWYGLDG-VEHTGGPLVDFDGFG-GLDDRLLDTDGDGLADRVL 131
A+ +DR G L+G + G P D G G+ D L D DGDG+ + +
Sbjct 105 HKRAIKLPKHIDRDGDGIPDHLEGDSDGDGIPDHQEDEDGDGIPDYLEDDDGDGIPNYLE 164
Query 132 CAGEQR---VTGYVDTDGDGRWDVRLTDTDGDGTAD 164
+ +R + ++D DGDG D D+DGDG D
Sbjct 165 TSHHKRAIKLPKHIDRDGDGIPDHLEGDSDGDGIPD 200
>gi|343925665|ref|ZP_08765182.1| hypothetical protein GOALK_048_00700 [Gordonia alkanivorans NBRC
16433]
gi|343764455|dbj|GAA12108.1| hypothetical protein GOALK_048_00700 [Gordonia alkanivorans NBRC
16433]
Length=107
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/63 (51%), Positives = 35/63 (56%), Gaps = 4/63 (6%)
Query 105 LVDFDGFGGLDDRLLDTDGDGLADRVLCA---GEQRVTGYVDTDGDGRWDVRLTDTDGDG 161
LVD DG G +D L D DGDG+ D VL G+ Y DTD DG DV DTDGDG
Sbjct 10 LVDTDGDGTIDAALTDVDGDGVTDAVLDTDGDGQADSIAY-DTDSDGEIDVIEADTDGDG 68
Query 162 TAD 164
D
Sbjct 69 YTD 71
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 43/85 (51%), Gaps = 15/85 (17%)
Query 21 VDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFID------ 74
VD DGDG +DA D+DGDG+ DA+ D DGD AD +D D+DG + D
Sbjct 11 VDTDGDGTIDAALTDVDGDGVT-DAVLDTDGDGQADSIAYDTDSDGEIDVIEADTDGDGY 69
Query 75 --------DGSGTWAVAVDRGGQLR 91
DG GT+ AVD G +
Sbjct 70 TDLAVADTDGDGTFDTAVDDEGNVE 94
>gi|271967241|ref|YP_003341437.1| hypothetical protein Sros_5959 [Streptosporangium roseum DSM
43021]
gi|270510416|gb|ACZ88694.1| hypothetical protein Sros_5959 [Streptosporangium roseum DSM
43021]
Length=84
Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/66 (46%), Positives = 37/66 (57%), Gaps = 10/66 (15%)
Query 101 TGGPLVDFDGFGGLDDRLLDTDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGD 160
T L+D+DG G D +L+D DGDG+AD E+R D DGDG D+ D DGD
Sbjct 7 TSTDLIDYDGDGSADAQLIDIDGDGIAD------EER----YDVDGDGVTDIVYLDIDGD 56
Query 161 GTADGA 166
G D A
Sbjct 57 GYVDEA 62
Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (64%), Gaps = 0/46 (0%)
Query 21 VDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDG 66
+D DGDG DA +D+DGDG+ D+ D DGD V D D+D DG
Sbjct 12 IDYDGDGSADAQLIDIDGDGIADEERYDVDGDGVTDIVYLDIDGDG 57
Score = 33.9 bits (76), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/37 (52%), Positives = 26/37 (71%), Gaps = 0/37 (0%)
Query 22 DLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHA 58
D+DGDG D + LD+DGDG D+A D +GD V+D+
Sbjct 39 DVDGDGVTDIVYLDIDGDGYVDEARVDVNGDGVSDYT 75
>gi|336324959|ref|YP_004604925.1| hypothetical protein CRES_0398 [Corynebacterium resistens DSM
45100]
gi|336100941|gb|AEI08761.1| hypothetical protein CRES_0398 [Corynebacterium resistens DSM
45100]
Length=246
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/59 (43%), Positives = 34/59 (58%), Gaps = 1/59 (1%)
Query 26 DGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFID-DGSGTWAVA 83
+G++ +D DGDG D L D D D D A+ D D DG P S +ID DG G++ +A
Sbjct 114 NGKVTETRIDSDGDGKTDTQLIDSDHDGAFDTAIVDSDQDGVPNSAYIDTDGDGSFDIA 172
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/143 (31%), Positives = 67/143 (47%), Gaps = 15/143 (10%)
Query 23 LDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGSGTWAV 82
LD G + +D DGDG+ + + D + + D D DG ++ + V
Sbjct 50 LDDQGEIVLTEIDTDGDGILETTVKALD--EKTNLVQQDKDKDGEMDTAKV--------V 99
Query 83 AVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRVLCAGEQ---RVT 139
G ++ L+ + T +D DG G D +L+D+D DG D + +Q +
Sbjct 100 DTKSGATIQQDTLENGKVTET-RIDSDGDGKTDTQLIDSDHDGAFDTAIVDSDQDGVPNS 158
Query 140 GYVDTDGDGRWDVRLTDTD-GDG 161
Y+DTDGDG +D+ TD D GDG
Sbjct 159 AYIDTDGDGSFDIAKTDADNGDG 181
>gi|340515055|gb|EGR45312.1| predicted protein [Trichoderma reesei QM6a]
Length=2770
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/166 (31%), Positives = 74/166 (45%), Gaps = 44/166 (26%)
Query 21 VDLDGDGRLDAI-----GLDLDGDG-----LRDDALADFDGDDVADHAVF-----DVDND 65
VD++GDG+ D G+DL+GDG +R D D + D + D V D++ D
Sbjct 1212 VDINGDGKADTSIGLGGGIDLNGDGQPDLIVRLDGGVDLNLDGIVDSHVLPGGGIDLNGD 1271
Query 66 GTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDG 125
G P+ + + G+ + GG + F G G +D +GDG
Sbjct 1272 GRPDITILRELVGSALTGTNNGGSPAG-------------LIFPGLG------VDLNGDG 1312
Query 126 LADRVLCAGEQRVTGYVDTDGDGRWDVRLT-----DTDGDGTADGA 166
AD + A G +DT+GDGR D+ +T D +GDG D A
Sbjct 1313 KADTAIGA-----DGGIDTNGDGRPDIYITANGTIDLNGDGRPDAA 1353
Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 51/167 (31%), Positives = 71/167 (43%), Gaps = 38/167 (22%)
Query 21 VDLDGDGRLDAI-----GLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDD 75
+D +GDG D + G+DL+GDG+ + FDG D++ DG+P++ +D
Sbjct 505 IDTNGDGVPDLVIGPLGGVDLNGDGIPE-IFIRFDG-------AVDLNGDGSPDA-MVDL 555
Query 76 GSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRVLCAGE 135
G R Y LD + GF L +DTDG+G D V+
Sbjct 556 DGGVDTDGDGRPNFKIMYVLDPQG------LGVLGFHSLAGSPVDTDGNGTPDAVISVSG 609
Query 136 QRV-------------TGYVDTDGDGRWDVRL-----TDTDGDGTAD 164
V G VD +GDGR D R+ D +GDGTAD
Sbjct 610 AIVLNDGRRLGPVIGLNGLVDLNGDGRPDTRILSRGGIDINGDGTAD 656
>gi|296141885|ref|YP_003649128.1| hypothetical protein Tpau_4221 [Tsukamurella paurometabola DSM
20162]
gi|296030019|gb|ADG80789.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=173
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 65/168 (39%), Positives = 71/168 (43%), Gaps = 17/168 (10%)
Query 1 VEYCIAGDDGSAGIWNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVF 60
+EY DG W P LDG A+ LD DGD DD L D D D AD A
Sbjct 7 IEYWFGLGDGQVSTWRSPA---LDG-----AVLLDFDGDARADDTLLDLDADGRADIAAL 58
Query 61 DVDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLD 120
D+D+DGT ES F DDGSG WA Q D
Sbjct 59 DLDDDGTAESRFRDDGSGLWA-------QREASAPSRCAAPEAATPAAPAPAPPQTPAHD 111
Query 121 TDGDGLADRVLCA--GEQRVTGYVDTDGDGRWDVRLTDTDGDGTADGA 166
DG + A G+ VD DGDG DV L DTDGDGTADGA
Sbjct 112 PDGPVQPVTPVPAEPGQAPRQAVVDEDGDGTPDVLLFDTDGDGTADGA 159
>gi|319936582|ref|ZP_08010996.1| hypothetical protein HMPREF9488_01829 [Coprobacillus sp. 29_1]
gi|319808380|gb|EFW04940.1| hypothetical protein HMPREF9488_01829 [Coprobacillus sp. 29_1]
Length=1243
Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/74 (42%), Positives = 43/74 (59%), Gaps = 3/74 (4%)
Query 15 WNRPFDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFID 74
+N ++D DGDG D I +D+DGDG+ D + D +GD+ D V DVD DG P+
Sbjct 845 YNPNINIDTDGDGTPD-INIDIDGDGVPDVNI-DTNGDNNPDVNV-DVDGDGIPDINIDT 901
Query 75 DGSGTWAVAVDRGG 88
DG G + +DR G
Sbjct 902 DGDGKPDINIDRNG 915
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/165 (29%), Positives = 71/165 (44%), Gaps = 26/165 (15%)
Query 13 GIWNRPFDVDLDGDGRLDA----IGLDLDGDGLRDD-------ALADFDGDDVADHAVFD 61
GIW ++D G G+ D +D D DG+ D+ ++ D + D + D
Sbjct 942 GIWKPDTNIDTKGSGKGDVDYYRPAIDKDRDGVDDNWKPNTNVSIEDLEYDTHNPNINID 1001
Query 62 VDNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFG-GLDDRLLD 120
+D D P+ DG G + +D G + P V+ D G D +D
Sbjct 1002 IDGDSKPDINIDTDGDGIPDINIDTNGDNK------------PDVNIDTNGDRKPDTNID 1049
Query 121 TDGDGLAD-RVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTAD 164
DGDG D + G + +DT+GDG+ D+ + D DGDG D
Sbjct 1050 IDGDGKPDINIDTNGNGKPDMNIDTNGDGKPDINI-DIDGDGKPD 1093
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/110 (32%), Positives = 53/110 (49%), Gaps = 23/110 (20%)
Query 19 FDVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGSG 78
++D +GDG+ D I +D+DGDG + D D +GD + D + D++ D P+ D +G
Sbjct 1070 MNIDTNGDGKPD-INIDIDGDG-KPDINIDTNGDGIPDINI-DINGDSHPDINIDTDNTG 1126
Query 79 TWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLAD 128
TW + + G DG+ D +DTDGDG AD
Sbjct 1127 TWKPSTEGGNS------DGIWKP--------------DTNIDTDGDGKAD 1156
>gi|340619611|ref|YP_004738064.1| hypothetical protein zobellia_3647 [Zobellia galactanivorans]
gi|339734408|emb|CAZ97785.1| Hypothetical protein zobellia_3647 [Zobellia galactanivorans]
Length=3855
Score = 38.1 bits (87), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 55/152 (37%), Positives = 63/152 (42%), Gaps = 34/152 (22%)
Query 20 DVDLDGDGRLDAIGLDLDGDGLRDDALA---DFDGDDVADHAVFDVDNDGTPESYFIDDG 76
+ D DGDG D+I LD D DG+ D A D DGD D+ TP G
Sbjct 2413 NCDTDGDGIPDSIDLDSDNDGIPDITEAGGTDTDGDGRVDYP--------TP-------G 2457
Query 77 SGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFG-GLDDRL-LDTDGDGLADRVLCAG 134
T V + G E PL D D G+ DRL LD+D DG+ D G
Sbjct 2458 DPTSMVDANNDGLAD-------EFETNPLPDEDSDNDGVKDRLDLDSDNDGIPDVTEAGG 2510
Query 135 EQRVTGYVDTDGDGRWDVRLTDTDGDGTADGA 166
D DGDG D TDTD DG AD
Sbjct 2511 S-------DADGDGVIDTHATDTDHDGLADSV 2535
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 48/136 (36%), Positives = 62/136 (46%), Gaps = 17/136 (12%)
Query 34 LDLDGDGLRDDALADFDGDDVADHAVFDVDNDG---TPESYFIDDGSGTWAVAVDRGGQL 90
D DGDG D++ DFDGD + + D DNDG T E+ + A+ G +
Sbjct 1748 FDTDGDGTTDNS-GDFDGDGIINAYDLDSDNDGILDTVEAQATSSFNAPGAIDPATGIPV 1806
Query 91 RWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRVLCAGEQRVTGYVDTDGDGRW 150
DG++ +D DG G D LD D DG+ D + G DTDGDG
Sbjct 1807 VGTDTDGIDP-----IDTDGDGNPDYLDLDADNDGVTDTLEAGG-------ADTDGDGAI 1854
Query 151 DVRLTDTDGDGTADGA 166
D TD DG+G AD
Sbjct 1855 D-GFTDADGNGVADSV 1869
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 58/164 (36%), Positives = 74/164 (46%), Gaps = 41/164 (25%)
Query 18 PFDVDLDGDGRLDAIGL---DLDGDGL-----RDDALADFDGDDVADHAVF-------DV 62
P ++D D DG D I + D DGDG+ D A+FDG D D A D+
Sbjct 1577 PLNLDNDNDGIPDVIEVYNGDADGDGVLDYEDPDFCAANFDGVDGWDCATMGLPDPDADL 1636
Query 63 DNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFG-GLDDRL-LD 120
D DGTP Y D + G + G ++FD G G+ + L LD
Sbjct 1637 DGDGTPNYYDTD------------------FPACGGLNANGVCINFDTDGDGVPNHLDLD 1678
Query 121 TDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGDGTAD 164
+D DG+ D ++ GE G D DGDG D LTD D DG AD
Sbjct 1679 SDNDGITD-IVELGE----GNKDADGDGVLD-NLTDVDNDGLAD 1716
>gi|291302586|ref|YP_003513864.1| hypothetical protein Snas_5136 [Stackebrandtia nassauensis DSM
44728]
gi|290571806|gb|ADD44771.1| hypothetical protein Snas_5136 [Stackebrandtia nassauensis DSM
44728]
Length=190
Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 48/157 (31%), Positives = 63/157 (41%), Gaps = 48/157 (30%)
Query 28 RLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFIDDGSGTWAVAVDRG 87
LD +DL+GDG+ D + DG V DV+NDGT + DDGS +
Sbjct 18 NLDYDDVDLNGDGIADHTMETDDGTSV------DVNNDGTVDGVITDDGSAYY------- 64
Query 88 GQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRV-----------LCAGEQ 136
D DG G D L+D++ DG D V + +
Sbjct 65 -------------------DSDGNGTFDQHLVDSNADGYVDVVESDLNEDGQVDQTSSDT 105
Query 137 RVTGYVD-----TDGDGRWDVRLTDTDGDGTADGASS 168
G+VD T GDG D DT+GDG AD +S
Sbjct 106 NYDGFVDQVDTDTTGDGVADTSTADTNGDGFADTTAS 142
>gi|195061623|ref|XP_001996032.1| GH14273 [Drosophila grimshawi]
gi|193891824|gb|EDV90690.1| GH14273 [Drosophila grimshawi]
Length=971
Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/46 (53%), Positives = 30/46 (66%), Gaps = 0/46 (0%)
Query 22 DLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGT 67
D+DGDG L+ DLDGDGL ++ D DGD A+H D+D DGT
Sbjct 251 DIDGDGTLNHEDSDLDGDGLPNEKDEDLDGDGKANHEDEDIDGDGT 296
>gi|261252121|ref|ZP_05944694.1| thrombospondin type 3 repeat family protein/Calx-beta domain
protein [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260935512|gb|EEX91501.1| thrombospondin type 3 repeat family protein/Calx-beta domain
protein [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342812397|gb|EGU47401.1| thrombospondin type 3 repeat family protein [Vibrio orientalis
CIP 102891 = ATCC 33934]
Length=1270
Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 50/162 (31%), Positives = 71/162 (44%), Gaps = 30/162 (18%)
Query 20 DVDLDGDGRLDAIGLD-------LDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYF 72
++D DGDG D + ++ + DG DD L D DG++V D+ D D DG +
Sbjct 432 ELDTDGDGIPDYLEIEVGLHPGRIQTDGATDDTLFDGDGNNVPDYMEVDSDGDGVEDYIE 491
Query 73 IDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRV-L 131
++ G+ + + V+ T +D DG G D D+DGDG+ D + +
Sbjct 492 LEFGTNP-------------FDPETVDGTPDSSIDSDGDGVPDVVGFDSDGDGIPDYIEI 538
Query 132 CAGEQRVTG---------YVDTDGDGRWDVRLTDTDGDGTAD 164
AG VD DGDG D DTDGDG D
Sbjct 539 QAGLNPALAQTDGVTNDMLVDADGDGILDYLEVDTDGDGVPD 580
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/163 (34%), Positives = 75/163 (47%), Gaps = 19/163 (11%)
Query 20 DVDLDGDGRLDAI----GLDLDG---DGLRDDALADFDGDDVADHAVFDVDNDGTPESYF 72
++D DG+G D I GL+ DG+ DD L D D + V D+ D D DG P+
Sbjct 327 EIDTDGEGIPDYIEDDVGLNPSTPTTDGVTDDKLVDADENGVPDYMEVDSDGDGVPDYAE 386
Query 73 ID-DGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTDGDGLADRV- 130
+D DG G ++ G L + + ++ T D +G G D LDTDGDG+ D +
Sbjct 387 LDTDGDGVLDF-LELGTGLDPFDPETIDGTPDLHADLNGNGIPDYAELDTDGDGIPDYLE 445
Query 131 ----LCAGEQRVTG-----YVDTDGDGRWDVRLTDTDGDGTAD 164
L G + G D DG+ D D+DGDG D
Sbjct 446 IEVGLHPGRIQTDGATDDTLFDGDGNNVPDYMEVDSDGDGVED 488
Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 57/178 (33%), Positives = 74/178 (42%), Gaps = 47/178 (26%)
Query 19 FDVDLDGDGRLDAI----GLDLD---GDGLRDDALADFDGDDVADHAVFDVDNDGTPESY 71
+D DGDG D I GLD + DG DD L D DG+++ D+ D D DG +
Sbjct 234 LKLDSDGDGIPDFIEIQAGLDPELPMTDGSTDDRLLDRDGNNIPDYMEVDSDGDGVADYI 293
Query 72 FIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDG--FGGLDDRLLDTDGDGLA-- 127
+ GS + D G P + FDG G D +DTDG+G+
Sbjct 294 EVQIGSDPF---------------DPETIDGTPDLKFDGNDNGLADIAEIDTDGEGIPDY 338
Query 128 -------------------DRVLCAGEQRVTGY--VDTDGDGRWDVRLTDTDGDGTAD 164
D+++ A E V Y VD+DGDG D DTDGDG D
Sbjct 339 IEDDVGLNPSTPTTDGVTDDKLVDADENGVPDYMEVDSDGDGVPDYAELDTDGDGVLD 396
>gi|300779788|ref|ZP_07089644.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
gi|300533898|gb|EFK54957.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
Length=169
Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/44 (53%), Positives = 26/44 (60%), Gaps = 0/44 (0%)
Query 21 VDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDN 64
VDLDGDG +D + LD DGDG + L D DGD D D DN
Sbjct 38 VDLDGDGTIDTVVLDSDGDGYANTVLVDVDGDGEFDEMFIDSDN 81
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/53 (48%), Positives = 31/53 (59%), Gaps = 0/53 (0%)
Query 22 DLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFID 74
D D DG +D +DLDGDG D + D DGD A+ + DVD DG + FID
Sbjct 26 DTDNDGTIDTALVDLDGDGTIDTVVLDSDGDGYANTVLVDVDGDGEFDEMFID 78
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/55 (46%), Positives = 31/55 (57%), Gaps = 10/55 (18%)
Query 105 LVDFDGFGGLDDRLLDTDGDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDG 159
LVD DG G +D +LD+DGDG A+ VL VD DGDG +D D+D
Sbjct 37 LVDLDGDGTIDTVVLDSDGDGYANTVL----------VDVDGDGEFDEMFIDSDN 81
>gi|306811894|gb|ADN05991.1| conserved hypothetical protein [uncultured Myxococcales bacterium]
Length=1670
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/158 (33%), Positives = 64/158 (41%), Gaps = 23/158 (14%)
Query 5 IAGDDGSAGIWNR-PFDVDLDGDGRLDAIGLDLDGDGLRDDALA-DFDGDDVADHAVFDV 62
D G+ GI + P +VD DGDG + + LD DGDGL D D DGD +AD
Sbjct 821 TCADAGTDGICDSLPTEVDADGDGLPNHLDLDADGDGLPDSTEGHDADGDGIADSVAV-- 878
Query 63 DNDGTPESYFIDDGSGTWAVAVDRGGQLRWYGLDGVEHTGGPLVDFDGFGGLDDRLLDTD 122
D A D G DG+ P+ D DG G D D+D
Sbjct 879 -------GNDDDGDGLDDAFDADCAGMPGTCAADGIV---APVADSDGDGAPDYLDADSD 928
Query 123 GDGLADRVLCAGEQRVTGYVDTDGDGRWDVRLTDTDGD 160
DGL DRV D DGDG+ + + D D
Sbjct 929 NDGLLDRVE---------AFDGDGDGQPETVPSGVDAD 957
>gi|319951892|ref|YP_004163159.1| thrombospondin type 3 repeat-containing protein [Cellulophaga
algicola DSM 14237]
gi|319420552|gb|ADV47661.1| Thrombospondin type 3 repeat-containing protein [Cellulophaga
algicola DSM 14237]
Length=4720
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/139 (36%), Positives = 61/139 (44%), Gaps = 18/139 (12%)
Query 38 GDGLRDDALADFDGDDVADHAVFDVDNDGTPESYFI------DDGSGTWAVAVDRGGQLR 91
G GL D DGD + D D DNDG P+S DG + +A D +
Sbjct 2457 GVGLFSSLCIDTDGDGIPDSIDLDSDNDGIPDSIEAGGTDTDGDGHIDYPIAGDP-TSMT 2515
Query 92 WYGLDGV--EHTGGPLVDFDGFG-GLDDRL-LDTDGDGLADRVLCAGEQRVTGYVDTDGD 147
DG+ E PL D D G G++DR+ LD+D DG+ D G D D D
Sbjct 2516 DINNDGLADEIADTPLPDEDSDGDGIEDRIDLDSDNDGIPDVTEAGGP-------DADND 2568
Query 148 GRWDVRLTDTDGDGTADGA 166
G D TDTD DG AD
Sbjct 2569 GVIDTFATDTDRDGLADSV 2587
>gi|195399842|ref|XP_002058528.1| GJ14480 [Drosophila virilis]
gi|194142088|gb|EDW58496.1| GJ14480 [Drosophila virilis]
Length=961
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/48 (53%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 20 DVDLDGDGRLDAIGLDLDGDGLRDDALADFDGDDVADHAVFDVDNDGT 67
D DLDGDG ++ DLDGDGL +D D DGD +H D+D DGT
Sbjct 234 DEDLDGDGLVNHEDNDLDGDGLPNDKDEDLDGDGKVNHEDEDIDGDGT 281
Lambda K H
0.317 0.146 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130209894640
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40