BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3911
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
gi|15611047|ref|NP_218428.1| RNA polymerase sigma factor SigM [M... 441 3e-122
gi|339300308|gb|AEJ52418.1| RNA polymerase sigma factor SigM [My... 439 2e-121
gi|289764102|ref|ZP_06523480.1| alternative RNA polymerase sigma... 401 4e-110
gi|31795084|ref|NP_857577.1| RNA polymerase sigma factor SigM [M... 320 8e-86
gi|121635897|ref|YP_976120.1| RNA polymerase sigma factor SigM [... 320 1e-85
gi|15843544|ref|NP_338581.1| RNA polymerase sigma factor SigM [M... 319 2e-85
gi|340628881|ref|YP_004747333.1| putative alternative RNA polyme... 318 5e-85
gi|339296716|gb|AEJ48827.1| RNA polymerase sigma factor SigM [My... 296 2e-78
gi|342862339|ref|ZP_08718980.1| RNA polymerase sigma factor SigM... 257 7e-67
gi|254823061|ref|ZP_05228062.1| RNA polymerase sigma factor SigM... 256 1e-66
gi|41410435|ref|NP_963271.1| RNA polymerase sigma factor SigM [M... 253 2e-65
gi|254777648|ref|ZP_05219164.1| RNA polymerase sigma factor SigM... 252 3e-65
gi|296167156|ref|ZP_06849563.1| RNA polymerase sigma-70 factor [... 249 1e-64
gi|240168391|ref|ZP_04747050.1| RNA polymerase sigma factor SigM... 231 6e-59
gi|183985445|ref|YP_001853736.1| alternative RNA polymerase sigm... 229 2e-58
gi|118620066|ref|YP_908398.1| RNA polymerase sigma factor SigM [... 221 6e-56
gi|126438340|ref|YP_001074031.1| RNA polymerase sigma factor Sig... 202 3e-50
gi|108802360|ref|YP_642557.1| RNA polymerase sigma factor SigM [... 201 7e-50
gi|118469491|ref|YP_891124.1| RNA polymerase sigma-70 factor [My... 188 4e-46
gi|333992975|ref|YP_004525589.1| RNA polymerase sigma factor Sig... 186 2e-45
gi|169632011|ref|YP_001705660.1| alternative RNA polymerase sigm... 184 1e-44
gi|120406994|ref|YP_956823.1| Fis family transcriptional regulat... 180 2e-43
gi|145221435|ref|YP_001132113.1| Fis family transcriptional regu... 171 8e-41
gi|213863406|ref|ZP_03386661.1| RNA polymerase sigma factor SigM... 169 2e-40
gi|111020634|ref|YP_703606.1| RNA polymerase sigma factor SigM [... 156 2e-36
gi|226362877|ref|YP_002780657.1| RNA polymerase sigma factor Sig... 155 5e-36
gi|291005740|ref|ZP_06563713.1| putative RNA polymerase sigma fa... 154 1e-35
gi|312142010|ref|YP_004009346.1| sigma-70 factor [Rhodococcus eq... 153 1e-35
gi|330470816|ref|YP_004408559.1| ECF subfamily RNA polymerase si... 150 1e-34
gi|145597086|ref|YP_001161383.1| sigma-70 region 2 domain-contai... 149 3e-34
gi|159040575|ref|YP_001539828.1| ECF subfamily RNA polymerase si... 147 9e-34
gi|343928721|ref|ZP_08768166.1| RNA polymerase ECF-type sigma fa... 142 3e-32
gi|54027634|ref|YP_121876.1| RNA polymerase sigma factor SigM [N... 142 4e-32
gi|238061895|ref|ZP_04606604.1| sigma-70 region 2 domain-contain... 142 5e-32
gi|257057901|ref|YP_003135733.1| RNA polymerase, sigma subunit, ... 140 1e-31
gi|302870714|ref|YP_003839351.1| sigma-70 family RNA polymerase ... 140 1e-31
gi|302531342|ref|ZP_07283684.1| RNA polymerase sigma-W factor [S... 140 1e-31
gi|229491219|ref|ZP_04385047.1| RNA polymerase sigma factor SigM... 140 1e-31
gi|226309501|ref|YP_002769463.1| RNA polymerase ECF-type sigma f... 139 2e-31
gi|315506951|ref|YP_004085838.1| ECF subfamily RNA polymerase si... 139 4e-31
gi|317509437|ref|ZP_07967055.1| sigma-70 family RNA polymerase s... 135 6e-30
gi|333922223|ref|YP_004495804.1| RNA polymerase sigma-70 factor ... 134 1e-29
gi|271970539|ref|YP_003344735.1| ECF subfamily RNA polymerase si... 132 3e-29
gi|256398130|ref|YP_003119694.1| RNA polymerase, sigma-24 subuni... 132 4e-29
gi|296271525|ref|YP_003654157.1| ECF subfamily RNA polymerase si... 131 6e-29
gi|317126723|ref|YP_004100835.1| RNA polymerase, sigma subunit, ... 130 2e-28
gi|269129145|ref|YP_003302515.1| ECF subfamily RNA polymerase si... 129 3e-28
gi|152968440|ref|YP_001364224.1| ECF family RNA polymerase sigma... 129 3e-28
gi|291303864|ref|YP_003515142.1| ECF subfamily RNA polymerase si... 129 3e-28
gi|326905744|gb|EGE52677.1| alternative RNA polymerase sigma fac... 126 2e-27
>gi|15611047|ref|NP_218428.1| RNA polymerase sigma factor SigM [Mycobacterium tuberculosis
H37Rv]
gi|2808696|emb|CAA16224.1| POSSIBLE ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGM [Mycobacterium
tuberculosis H37Rv]
Length=222
Score = 441 bits (1134), Expect = 3e-122, Method: Compositional matrix adjust.
Identities = 222/222 (100%), Positives = 222/222 (100%), Gaps = 0/222 (0%)
Query 1 MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED 60
MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED
Sbjct 1 MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED 60
Query 61 ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD 120
ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD
Sbjct 61 ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD 120
Query 121 RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRGHRQEPLRPGAGP 180
RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRGHRQEPLRPGAGP
Sbjct 121 RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRGHRQEPLRPGAGP 180
Query 181 PSAAAGLSQHRGEHPALTPLPVRRSIDPRARRYPTSGYCHRA 222
PSAAAGLSQHRGEHPALTPLPVRRSIDPRARRYPTSGYCHRA
Sbjct 181 PSAAAGLSQHRGEHPALTPLPVRRSIDPRARRYPTSGYCHRA 222
>gi|339300308|gb|AEJ52418.1| RNA polymerase sigma factor SigM [Mycobacterium tuberculosis
CCDC5180]
Length=222
Score = 439 bits (1128), Expect = 2e-121, Method: Compositional matrix adjust.
Identities = 221/222 (99%), Positives = 221/222 (99%), Gaps = 0/222 (0%)
Query 1 MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED 60
MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED
Sbjct 1 MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED 60
Query 61 ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD 120
ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD
Sbjct 61 ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD 120
Query 121 RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRGHRQEPLRPGAGP 180
RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGR HRQEPLRPGAGP
Sbjct 121 RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGREHRQEPLRPGAGP 180
Query 181 PSAAAGLSQHRGEHPALTPLPVRRSIDPRARRYPTSGYCHRA 222
PSAAAGLSQHRGEHPALTPLPVRRSIDPRARRYPTSGYCHRA
Sbjct 181 PSAAAGLSQHRGEHPALTPLPVRRSIDPRARRYPTSGYCHRA 222
>gi|289764102|ref|ZP_06523480.1| alternative RNA polymerase sigma factor sigM [Mycobacterium tuberculosis
GM 1503]
gi|289711608|gb|EFD75624.1| alternative RNA polymerase sigma factor sigM [Mycobacterium tuberculosis
GM 1503]
Length=222
Score = 401 bits (1030), Expect = 4e-110, Method: Compositional matrix adjust.
Identities = 206/222 (93%), Positives = 206/222 (93%), Gaps = 0/222 (0%)
Query 1 MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED 60
MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED
Sbjct 1 MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED 60
Query 61 ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD 120
ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD
Sbjct 61 ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD 120
Query 121 RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRGHRQEPLRPGAGP 180
RTAQVETAIAVQRALMRLPVEQ G RPDAGRGRGHRQEPLRPGAGP
Sbjct 121 RTAQVETAIAVQRALMRLPVEQPGRGGRRGHAGLFDRRHRPDAGRGRGHRQEPLRPGAGP 180
Query 181 PSAAAGLSQHRGEHPALTPLPVRRSIDPRARRYPTSGYCHRA 222
PSAAAGLSQHRGEHPALTPLPVRRSIDPRARRYPTSGYCHRA
Sbjct 181 PSAAAGLSQHRGEHPALTPLPVRRSIDPRARRYPTSGYCHRA 222
>gi|31795084|ref|NP_857577.1| RNA polymerase sigma factor SigM [Mycobacterium bovis AF2122/97]
gi|31620682|emb|CAD96127.1| POSSIBLE ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGMa [FIRST
PART] [Mycobacterium bovis AF2122/97]
Length=196
Score = 320 bits (821), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 161/168 (96%), Positives = 161/168 (96%), Gaps = 0/168 (0%)
Query 1 MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED 60
MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED
Sbjct 1 MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED 60
Query 61 ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD 120
ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD
Sbjct 61 ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD 120
Query 121 RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRG 168
RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADT G G
Sbjct 121 RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTSRMLGVAEG 168
>gi|121635897|ref|YP_976120.1| RNA polymerase sigma factor SigM [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|121639822|ref|YP_980046.1| RNA polymerase sigma factor SigM [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148663778|ref|YP_001285301.1| RNA polymerase sigma factor SigM [Mycobacterium tuberculosis
H37Ra]
60 more sequence titles
Length=196
Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 159/159 (100%), Positives = 159/159 (100%), Gaps = 0/159 (0%)
Query 1 MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED 60
MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED
Sbjct 1 MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED 60
Query 61 ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD 120
ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD
Sbjct 61 ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD 120
Query 121 RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADT 159
RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADT
Sbjct 121 RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADT 159
>gi|15843544|ref|NP_338581.1| RNA polymerase sigma factor SigM [Mycobacterium tuberculosis
CDC1551]
gi|254233395|ref|ZP_04926721.1| alternative RNA polymerase sigma factor sigM [Mycobacterium tuberculosis
C]
gi|254366447|ref|ZP_04982491.1| alternative RNA polymerase sigma factor sigM [Mycobacterium tuberculosis
str. Haarlem]
gi|13883921|gb|AAK48395.1| RNA polymerase sigma-70 factor, ECF subfamily [Mycobacterium
tuberculosis CDC1551]
gi|124603188|gb|EAY61463.1| alternative RNA polymerase sigma factor sigM [Mycobacterium tuberculosis
C]
gi|134151959|gb|EBA44004.1| alternative RNA polymerase sigma factor sigM [Mycobacterium tuberculosis
str. Haarlem]
gi|323717327|gb|EGB26532.1| alternative RNA polymerase sigma factor sigM [Mycobacterium tuberculosis
CDC1551A]
Length=196
Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 158/159 (99%), Positives = 159/159 (100%), Gaps = 0/159 (0%)
Query 1 MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED 60
MPPPIGYCPAVGFGGRHERS+AELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED
Sbjct 1 MPPPIGYCPAVGFGGRHERSNAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED 60
Query 61 ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD 120
ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD
Sbjct 61 ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD 120
Query 121 RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADT 159
RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADT
Sbjct 121 RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADT 159
>gi|340628881|ref|YP_004747333.1| putative alternative RNA polymerase sigma factor SIGM [Mycobacterium
canettii CIPT 140010059]
gi|340007071|emb|CCC46262.1| putative alternative RNA polymerase sigma factor SIGM [Mycobacterium
canettii CIPT 140010059]
Length=196
Score = 318 bits (814), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 158/159 (99%), Positives = 158/159 (99%), Gaps = 0/159 (0%)
Query 1 MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED 60
MPPPIGYCPAVGFGGRHER DAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED
Sbjct 1 MPPPIGYCPAVGFGGRHERRDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSED 60
Query 61 ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD 120
ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD
Sbjct 61 ADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVAD 120
Query 121 RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADT 159
RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADT
Sbjct 121 RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADT 159
>gi|339296716|gb|AEJ48827.1| RNA polymerase sigma factor SigM [Mycobacterium tuberculosis
CCDC5079]
Length=186
Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 148/149 (99%), Positives = 149/149 (100%), Gaps = 0/149 (0%)
Query 11 VGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAML 70
+GFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAML
Sbjct 1 MGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAML 60
Query 71 SAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIA 130
SAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIA
Sbjct 61 SAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIA 120
Query 131 VQRALMRLPVEQRAAVVAVDMQGYSIADT 159
VQRALMRLPVEQRAAVVAVDMQGYSIADT
Sbjct 121 VQRALMRLPVEQRAAVVAVDMQGYSIADT 149
>gi|342862339|ref|ZP_08718980.1| RNA polymerase sigma factor SigM [Mycobacterium colombiense CECT
3035]
gi|342130196|gb|EGT83524.1| RNA polymerase sigma factor SigM [Mycobacterium colombiense CECT
3035]
Length=195
Score = 257 bits (657), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 127/151 (85%), Positives = 138/151 (92%), Gaps = 2/151 (1%)
Query 11 VGFG--GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDA 68
+GFG + ERSDAELLAAHVAGDRYAF +LF RH R LHRLARLT+RT EDA+DALQDA
Sbjct 1 MGFGRNAKQERSDAELLAAHVAGDRYAFSELFLRHQRHLHRLARLTTRTREDAEDALQDA 60
Query 69 MLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETA 128
MLSAHRGAG+FR+DAAV SWLHRIVVNACLDRLRR KAHPT PLED+YPVADRTAQVET
Sbjct 61 MLSAHRGAGAFRHDAAVGSWLHRIVVNACLDRLRRTKAHPTVPLEDIYPVADRTAQVETT 120
Query 129 IAVQRALMRLPVEQRAAVVAVDMQGYSIADT 159
+AVQRALMRLP+EQRAAVVAVDMQGYS+ADT
Sbjct 121 MAVQRALMRLPIEQRAAVVAVDMQGYSVADT 151
>gi|254823061|ref|ZP_05228062.1| RNA polymerase sigma factor SigM [Mycobacterium intracellulare
ATCC 13950]
Length=195
Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/177 (76%), Positives = 146/177 (83%), Gaps = 13/177 (7%)
Query 11 VGFGG--RHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDA 68
+GFGG + +RSDAELLAAHVAGDRYAF +LF RH R LHRLARLT+RT EDA+DALQDA
Sbjct 1 MGFGGDVKRDRSDAELLAAHVAGDRYAFSELFLRHQRHLHRLARLTTRTPEDAEDALQDA 60
Query 69 MLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETA 128
MLSAHRGAG+FR+DAAV SWLHRIVVNACLDRLRR KAHPT PLEDVYPVADRTAQVET
Sbjct 61 MLSAHRGAGAFRHDAAVGSWLHRIVVNACLDRLRRTKAHPTVPLEDVYPVADRTAQVETT 120
Query 129 IAVQRALMRLPVEQRAAVVAVDMQGYSIADT-----------RPDAGRGRGHRQEPL 174
+AVQRALMRLP+EQRAAVVAVDMQGYS+ADT + RGRG E L
Sbjct 121 MAVQRALMRLPLEQRAAVVAVDMQGYSVADTARLLGVAEGTIKSRCARGRGRLAELL 177
>gi|41410435|ref|NP_963271.1| RNA polymerase sigma factor SigM [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118463700|ref|YP_884409.1| RNA polymerase sigma factor SigM [Mycobacterium avium 104]
gi|41399269|gb|AAS06887.1| SigM [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118164987|gb|ABK65884.1| RNA polymerase sigma-70 factor [Mycobacterium avium 104]
gi|336459802|gb|EGO38716.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length=195
Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/151 (84%), Positives = 138/151 (92%), Gaps = 2/151 (1%)
Query 11 VGFG--GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDA 68
+GFG G +RSDAELLAAHVAGDRYAF +LF RH R LHRLARLT+R+ EDA+DALQDA
Sbjct 1 MGFGRNGNGDRSDAELLAAHVAGDRYAFGELFVRHQRHLHRLARLTTRSPEDAEDALQDA 60
Query 69 MLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETA 128
MLSAHRGAG+FR+DAAV SWLHRIVVNACLDRLRR KAHPT PLED+YPVADRTAQVET
Sbjct 61 MLSAHRGAGAFRHDAAVGSWLHRIVVNACLDRLRRTKAHPTVPLEDIYPVADRTAQVETT 120
Query 129 IAVQRALMRLPVEQRAAVVAVDMQGYSIADT 159
+AVQRALMRLPVEQRAA+VAVDMQGYS+ADT
Sbjct 121 LAVQRALMRLPVEQRAAIVAVDMQGYSVADT 151
>gi|254777648|ref|ZP_05219164.1| RNA polymerase sigma factor SigM [Mycobacterium avium subsp.
avium ATCC 25291]
Length=195
Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 126/151 (84%), Positives = 138/151 (92%), Gaps = 2/151 (1%)
Query 11 VGFG--GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDA 68
+GFG G +RSDAELLAAHVAGDRYAF +LF RH R LHRLARLT+R+ EDA+DALQDA
Sbjct 1 MGFGRDGNGDRSDAELLAAHVAGDRYAFGELFVRHQRHLHRLARLTTRSPEDAEDALQDA 60
Query 69 MLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETA 128
MLSAHRGAG+FR+DAAV SWLHRIVVNACLDRLRR KAHPT PLED+YPVADRTAQVET
Sbjct 61 MLSAHRGAGAFRHDAAVGSWLHRIVVNACLDRLRRTKAHPTVPLEDIYPVADRTAQVETT 120
Query 129 IAVQRALMRLPVEQRAAVVAVDMQGYSIADT 159
+AVQRALMRLPVEQRAA+VAVDMQGYS+ADT
Sbjct 121 LAVQRALMRLPVEQRAAIVAVDMQGYSVADT 151
>gi|296167156|ref|ZP_06849563.1| RNA polymerase sigma-70 factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897478|gb|EFG77077.1| RNA polymerase sigma-70 factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=203
Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 126/154 (82%), Positives = 136/154 (89%), Gaps = 0/154 (0%)
Query 15 GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHR 74
+ +RSDAELLAAHV GDR+AF +LF RH RQLHRLARLT+RT+EDA+DALQDAMLSAHR
Sbjct 7 NQRQRSDAELLAAHVDGDRHAFGELFLRHQRQLHRLARLTTRTAEDAEDALQDAMLSAHR 66
Query 75 GAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIAVQRA 134
AGSFR+DAAV SWLHRIVVNACLDRLRR KAHPT PLEDVYPVADRTAQVETA+ VQRA
Sbjct 67 AAGSFRHDAAVDSWLHRIVVNACLDRLRRTKAHPTVPLEDVYPVADRTAQVETAVVVQRA 126
Query 135 LMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRG 168
LMRLPVEQRAAVVAVDMQGYS+ADT G G
Sbjct 127 LMRLPVEQRAAVVAVDMQGYSVADTAALLGVAEG 160
>gi|240168391|ref|ZP_04747050.1| RNA polymerase sigma factor SigM [Mycobacterium kansasii ATCC
12478]
Length=188
Score = 231 bits (589), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 119/158 (76%), Positives = 135/158 (86%), Gaps = 0/158 (0%)
Query 11 VGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAML 70
+GFGG+ ERSDAELLAA V G+ AF+QLF RH R L+RLARLTSRT EDA+DALQ+AM+
Sbjct 1 MGFGGKRERSDAELLAAFVGGEHRAFEQLFLRHQRHLYRLARLTSRTPEDAEDALQEAMI 60
Query 71 SAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIA 130
SAHR A SFRYDAAVSSWLHRIVVNACLDRLR+A+A PTAPL+DV+PV D TA+VET I
Sbjct 61 SAHRCAASFRYDAAVSSWLHRIVVNACLDRLRQARARPTAPLDDVHPVPDATARVETEIL 120
Query 131 VQRALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRG 168
V+RAL++LPVEQRAAVVAVDMQGYSIADT G G
Sbjct 121 VRRALLQLPVEQRAAVVAVDMQGYSIADTARMLGVAEG 158
>gi|183985445|ref|YP_001853736.1| alternative RNA polymerase sigma factor SigM [Mycobacterium marinum
M]
gi|183178771|gb|ACC43881.1| alternative RNA polymerase sigma factor SigM [Mycobacterium marinum
M]
Length=195
Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/165 (72%), Positives = 136/165 (83%), Gaps = 7/165 (4%)
Query 11 VGFGGRHER-------SDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADD 63
+ FGG+ +R +DAELLAA VAG++ AF++LFRRHHRQL+ LARLTS+T EDA+D
Sbjct 1 MAFGGKRQRRDTARQRTDAELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAED 60
Query 64 ALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTA 123
ALQ+AM+S H AGSFR DAAV+SWLHRIVVNACLDRLRRAK+ PT PLEDVYPV D T
Sbjct 61 ALQEAMISVHNCAGSFRQDAAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATT 120
Query 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRG 168
+VETAI V+RALMRLPVEQRAAVVAVDMQGYSIADT G +G
Sbjct 121 RVETAILVRRALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQG 165
>gi|118620066|ref|YP_908398.1| RNA polymerase sigma factor SigM [Mycobacterium ulcerans Agy99]
gi|118572176|gb|ABL06927.1| alternative RNA polymerase sigma factor SigM [Mycobacterium ulcerans
Agy99]
Length=195
Score = 221 bits (563), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 114/165 (70%), Positives = 134/165 (82%), Gaps = 7/165 (4%)
Query 11 VGFGGRHER-------SDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADD 63
+ FGG+ +R +DAELLAA VAG++ AF++LFRRHHRQL+ LARLTS+T EDA+D
Sbjct 1 MAFGGKRQRRNTARQRTDAELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAED 60
Query 64 ALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTA 123
ALQ+AM+S H AGSFR DAAV+SWLHRIVVNACL+RLRRA++ PT PLEDVYPV D T
Sbjct 61 ALQEAMISVHNCAGSFRQDAAVTSWLHRIVVNACLERLRRAESRPTVPLEDVYPVPDATT 120
Query 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRG 168
+VETAI V+RALMRLPVEQRAAVVAVDMQ YSI DT G +G
Sbjct 121 RVETAILVRRALMRLPVEQRAAVVAVDMQRYSIPDTALLLGVAQG 165
>gi|126438340|ref|YP_001074031.1| RNA polymerase sigma factor SigM [Mycobacterium sp. JLS]
gi|126238140|gb|ABO01541.1| transcriptional regulator, Fis family [Mycobacterium sp. JLS]
Length=225
Score = 202 bits (514), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 116/194 (60%), Positives = 134/194 (70%), Gaps = 23/194 (11%)
Query 19 RSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGS 78
RSDA+LLA HVAGDRYAF +LF RH RQL RLAR+TS EDA DALQ+AMLSAHR A S
Sbjct 9 RSDAQLLADHVAGDRYAFAELFVRHQRQLERLARITSSNREDAADALQEAMLSAHRKAAS 68
Query 79 FRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPL-EDVYPVADRTAQVETAIAVQRALMR 137
FR+D+AVSSWL+RIVVNACLDRLR + H T+ L +DV D TA+V+TAI ++RAL+R
Sbjct 69 FRFDSAVSSWLYRIVVNACLDRLRTNRTHATSTLVDDVGSAGDPTARVDTAIVIERALLR 128
Query 138 LPVEQRAAVVAVDMQGYSIADT-----------RPDAGRGRGHRQEPLR-----PGAGPP 181
LPVEQRAAVVAVDMQGYS+A+T + RGR E LR A PP
Sbjct 129 LPVEQRAAVVAVDMQGYSVAETARMLGVAEGTVKSRCSRGRAKLAETLRGLDETETASPP 188
Query 182 SAAAGLSQHRGEHP 195
A RG HP
Sbjct 189 PAG------RGCHP 196
>gi|108802360|ref|YP_642557.1| RNA polymerase sigma factor SigM [Mycobacterium sp. MCS]
gi|119871513|ref|YP_941465.1| RNA polymerase sigma factor SigM [Mycobacterium sp. KMS]
gi|108772779|gb|ABG11501.1| RNA polymerase, sigma-24 subunit, RpoE [Mycobacterium sp. MCS]
gi|119697602|gb|ABL94675.1| transcriptional regulator, Fis family [Mycobacterium sp. KMS]
Length=225
Score = 201 bits (511), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 114/194 (59%), Positives = 134/194 (70%), Gaps = 23/194 (11%)
Query 19 RSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGS 78
RSDA+LLA HVAGDRYAF +LF RH RQL RLAR+TS EDA DALQ+AMLSAHR A S
Sbjct 9 RSDAQLLADHVAGDRYAFAELFVRHQRQLERLARITSSNREDAADALQEAMLSAHRKAAS 68
Query 79 FRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPL-EDVYPVADRTAQVETAIAVQRALMR 137
FR+D+AVSSWL+RIVVNACLDRLR + H T+ L +DV D T++V+TAI ++RAL+R
Sbjct 69 FRFDSAVSSWLYRIVVNACLDRLRTNRTHATSTLVDDVGSAGDPTSRVDTAIVIERALLR 128
Query 138 LPVEQRAAVVAVDMQGYSIADT-----------RPDAGRGRGHRQEPLR-----PGAGPP 181
LPVEQRAA+VAVDMQGYS+A+T + RGR E LR A PP
Sbjct 129 LPVEQRAAIVAVDMQGYSVAETARMLGVAEGTVKSRCSRGRAKLAETLRGLDETETASPP 188
Query 182 SAAAGLSQHRGEHP 195
A RG HP
Sbjct 189 PAG------RGCHP 196
>gi|118469491|ref|YP_891124.1| RNA polymerase sigma-70 factor [Mycobacterium smegmatis str.
MC2 155]
gi|118170778|gb|ABK71674.1| RNA polymerase sigma-70 factor [Mycobacterium smegmatis str.
MC2 155]
Length=208
Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 103/165 (63%), Positives = 121/165 (74%), Gaps = 12/165 (7%)
Query 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73
G H RSDAELLAAHVAGDRYAF++L RHHRQL RLA LTS +DADDA+Q+A+L AH
Sbjct 8 GAAHTRSDAELLAAHVAGDRYAFEELVLRHHRQLRRLAYLTSNHLDDADDAVQEALLKAH 67
Query 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123
R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD
Sbjct 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125
Query 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRG 168
+V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+T G G
Sbjct 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEG 170
>gi|333992975|ref|YP_004525589.1| RNA polymerase sigma factor SigM [Mycobacterium sp. JDM601]
gi|333488943|gb|AEF38335.1| alternative RNA polymerase sigma factor SigM [Mycobacterium sp.
JDM601]
Length=206
Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/154 (70%), Positives = 122/154 (80%), Gaps = 0/154 (0%)
Query 15 GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHR 74
G ERSDAELLAAHVAGDR+AF +L+ RH R+L RLARLT+ EDA+DALQ+AMLSAHR
Sbjct 2 GHPERSDAELLAAHVAGDRHAFQELYGRHQRRLRRLARLTTGCPEDAEDALQEAMLSAHR 61
Query 75 GAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIAVQRA 134
AGSFRY+AAV SWLHRIVVNAC DRLRR + HP+ PL + VADRTA+VETA+ V+ A
Sbjct 62 SAGSFRYNAAVGSWLHRIVVNACRDRLRRNRLHPSVPLAESPAVADRTAEVETALEVRAA 121
Query 135 LMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRG 168
L RLP EQRAAVV VDM GYSIAD G +G
Sbjct 122 LRRLPTEQRAAVVTVDMHGYSIADAARALGVAQG 155
>gi|169632011|ref|YP_001705660.1| alternative RNA polymerase sigma factor SigM [Mycobacterium abscessus
ATCC 19977]
gi|169243978|emb|CAM65006.1| Possible alternative RNA polymerase sigma factor SigM [Mycobacterium
abscessus]
Length=194
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/142 (73%), Positives = 121/142 (86%), Gaps = 1/142 (0%)
Query 18 ERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAG 77
+ SDAELLAAHVAGD AF+QLFRRHHR+L+RLAR TSRT EDA DALQ+AMLSAHRGA
Sbjct 10 QHSDAELLAAHVAGDPSAFEQLFRRHHRRLYRLARATSRTPEDAADALQEAMLSAHRGAA 69
Query 78 SFRYDAAVSSWLHRIVVNACLDRLRRAKAH-PTAPLEDVYPVADRTAQVETAIAVQRALM 136
+FR DAAV+SWL+RIVVNACLDR+RR KAH P EDVY + D + V+T+I +Q+AL+
Sbjct 70 NFRNDAAVTSWLYRIVVNACLDRMRRNKAHIPIELEEDVYTLEDPSTNVDTSIVIQKALL 129
Query 137 RLPVEQRAAVVAVDMQGYSIAD 158
RLP EQRAAV+AVDMQGYS+AD
Sbjct 130 RLPAEQRAAVIAVDMQGYSVAD 151
>gi|120406994|ref|YP_956823.1| Fis family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119959812|gb|ABM16817.1| transcriptional regulator, Fis family [Mycobacterium vanbaalenii
PYR-1]
Length=191
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/163 (67%), Positives = 129/163 (80%), Gaps = 7/163 (4%)
Query 13 FGGRHER------SDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQ 66
FGG H R +DAELLAAHVAGDRYAF++LF RHHRQL+RLA+LTSR +DA DALQ
Sbjct 4 FGGTHGRPEQQPRTDAELLAAHVAGDRYAFEELFHRHHRQLYRLAQLTSRDPDDAADALQ 63
Query 67 DAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLED-VYPVADRTAQV 125
DA+L+AHR A +FR+D+AVSSWL+RIVVNACLDRLRR ++ L+D PV D T +V
Sbjct 64 DALLAAHRTARTFRHDSAVSSWLYRIVVNACLDRLRRNRSRACEELDDQAGPVVDPTGRV 123
Query 126 ETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRG 168
+TAI V+RALMRLP+EQRAAVVAVDMQGYSIA+T G G
Sbjct 124 DTAIVVERALMRLPLEQRAAVVAVDMQGYSIAETARMLGVAEG 166
>gi|145221435|ref|YP_001132113.1| Fis family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|315446813|ref|YP_004079692.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp.
Spyr1]
gi|145213921|gb|ABP43325.1| transcriptional regulator, Fis family [Mycobacterium gilvum PYR-GCK]
gi|315265116|gb|ADU01858.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp.
Spyr1]
Length=189
Score = 171 bits (432), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 104/153 (68%), Positives = 120/153 (79%), Gaps = 6/153 (3%)
Query 13 FGGRHER-----SDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQD 67
FGG +R +DAELLAAHVAGDRYAF++LF RHHRQL+RLA LTSR +DA DALQD
Sbjct 4 FGGHPQRPPGPRTDAELLAAHVAGDRYAFEELFHRHHRQLYRLAHLTSRDPDDAADALQD 63
Query 68 AMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVA-DRTAQVE 126
AML+AHR A +FR D AVSSWL+RIVVNACLDRLRR K L+D A D T V+
Sbjct 64 AMLAAHRTARTFRQDCAVSSWLYRIVVNACLDRLRRNKTRAWDVLDDESAGAFDPTGHVD 123
Query 127 TAIAVQRALMRLPVEQRAAVVAVDMQGYSIADT 159
TAI V+RAL+ LPVEQRAAVVAVDMQG+S+A+T
Sbjct 124 TAIVVERALLCLPVEQRAAVVAVDMQGFSVAET 156
>gi|213863406|ref|ZP_03386661.1| RNA polymerase sigma factor SigM [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length=84
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)
Query 40 FRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLD 99
FRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLD
Sbjct 1 FRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLD 60
Query 100 RLRRAKAHPTAPLEDVYPVADRTA 123
RLRRAKAHPTAPLEDVYPVADRTA
Sbjct 61 RLRRAKAHPTAPLEDVYPVADRTA 84
>gi|111020634|ref|YP_703606.1| RNA polymerase sigma factor SigM [Rhodococcus jostii RHA1]
gi|110820164|gb|ABG95448.1| sigma factor, sigma 70 type, group 4 (ECF) [Rhodococcus jostii
RHA1]
Length=193
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/146 (59%), Positives = 107/146 (74%), Gaps = 5/146 (3%)
Query 18 ERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAG 77
E SD +LLAAHVAGDR+AF+ L RH+ L +A+ TS T+EDA DALQ+A+LSAHR AG
Sbjct 11 EPSDVDLLAAHVAGDRHAFETLLARHYDHLWHVAKRTSYTTEDAADALQEALLSAHRNAG 70
Query 78 SFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPL---EDVYP--VADRTAQVETAIAVQ 132
SFR DAAV SWLH IVVNACLDR+RR KA P L ED P D ++VE ++ V+
Sbjct 71 SFRRDAAVRSWLHTIVVNACLDRIRRNKARPAVSLSADEDDEPRDARDYVSEVELSLVVE 130
Query 133 RALMRLPVEQRAAVVAVDMQGYSIAD 158
RAL +LP +QR A+VAVD++G S ++
Sbjct 131 RALAQLPADQRTAIVAVDLEGRSTSE 156
>gi|226362877|ref|YP_002780657.1| RNA polymerase sigma factor SigM [Rhodococcus opacus B4]
gi|226241364|dbj|BAH51712.1| RNA polymerase ECF-type sigma factor SigM [Rhodococcus opacus
B4]
Length=193
Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/146 (59%), Positives = 107/146 (74%), Gaps = 5/146 (3%)
Query 18 ERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAG 77
E SD +LLAAHVAGDR+AF+ L RH+ L +A+ TS T+EDA DALQ+A+LSAHR AG
Sbjct 11 EPSDVDLLAAHVAGDRHAFETLLGRHYDHLWHVAKRTSYTTEDAADALQEALLSAHRNAG 70
Query 78 SFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPL---EDVYP--VADRTAQVETAIAVQ 132
SFR DAAV SWLH IVVNACLDR+RR KA P L ED P D ++VE ++ V+
Sbjct 71 SFRRDAAVRSWLHTIVVNACLDRIRRNKARPAVSLSADEDDEPRDTRDYVSEVELSLVVE 130
Query 133 RALMRLPVEQRAAVVAVDMQGYSIAD 158
RAL +LP +QR A+VAVD++G S ++
Sbjct 131 RALAQLPPDQRTAIVAVDLEGRSTSE 156
>gi|291005740|ref|ZP_06563713.1| putative RNA polymerase sigma factor [Saccharopolyspora erythraea
NRRL 2338]
Length=202
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/155 (54%), Positives = 108/155 (70%), Gaps = 5/155 (3%)
Query 19 RSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGS 78
RSDA+L+AAH +GD +AF +LFRRH +L +A T R E+A DALQDAM+SA R A S
Sbjct 6 RSDADLIAAHTSGDPHAFSELFRRHRDRLWAVALRTMRDHEEAADALQDAMISAFRNASS 65
Query 79 FRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVA-----DRTAQVETAIAVQR 133
FR ++ V++WLHRIVVNACLDR+RR +A PT PL D P D A+ +T +AVQ
Sbjct 66 FRAESQVTTWLHRIVVNACLDRIRRRQARPTVPLPDTGPAEPAVPRDAMAEQDTRMAVQD 125
Query 134 ALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRG 168
AL LP +QRAA+V VD++GYS+++T G G
Sbjct 126 ALAELPEDQRAAIVLVDVEGYSVSETSAMLGVAEG 160
>gi|312142010|ref|YP_004009346.1| sigma-70 factor [Rhodococcus equi 103S]
gi|325677542|ref|ZP_08157206.1| RNA polymerase sigma factor SigM [Rhodococcus equi ATCC 33707]
gi|311891349|emb|CBH50670.1| sigma-70 factor [Rhodococcus equi 103S]
gi|325551789|gb|EGD21487.1| RNA polymerase sigma factor SigM [Rhodococcus equi ATCC 33707]
Length=193
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/144 (60%), Positives = 104/144 (73%), Gaps = 5/144 (3%)
Query 20 SDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSF 79
SD+ELLAAH +GD AF +L RH+ L +AR TS T+EDA DALQ+A+LSAHR AGSF
Sbjct 13 SDSELLAAHASGDGDAFAELLNRHYDHLWHVARRTSYTAEDAADALQEALLSAHRTAGSF 72
Query 80 RYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPL-----EDVYPVADRTAQVETAIAVQRA 134
R DAAV SWLH IVVNACLDR+RR + T L ED DR ++ ET+I V +A
Sbjct 73 REDAAVRSWLHTIVVNACLDRIRRNRVRQTVSLSNDDAEDPGDDRDRISERETSILVDQA 132
Query 135 LMRLPVEQRAAVVAVDMQGYSIAD 158
L RL +QRAAVVAVDM+GYS+A+
Sbjct 133 LQRLSPDQRAAVVAVDMEGYSVAE 156
>gi|330470816|ref|YP_004408559.1| ECF subfamily RNA polymerase sigma-24 factor [Verrucosispora
maris AB-18-032]
gi|328813787|gb|AEB47959.1| ECF subfamily RNA polymerase sigma-24 factor [Verrucosispora
maris AB-18-032]
Length=228
Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/215 (48%), Positives = 125/215 (59%), Gaps = 23/215 (10%)
Query 20 SDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSF 79
SD +LL AHVAGDR+AF +LF+RH +L +A T E+A DALQDAMLSAHR A F
Sbjct 6 SDLDLLHAHVAGDRHAFGELFQRHRDRLWAVALRTLGDREEAADALQDAMLSAHRAAARF 65
Query 80 RYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLED----------------VYPVADRTA 123
R DAAV++WLHRIVVNACLDR+RR +AHPT PL D PV D
Sbjct 66 RGDAAVTTWLHRIVVNACLDRIRRRQAHPTVPLPDGVREPSDGHGTGGVEPAAPVRDH-- 123
Query 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRGHRQEPLRPGAGPPSA 183
+TA+ V+ AL LP+EQRAA+V VD+QGY +A+ G G + R G
Sbjct 124 --DTALVVREALATLPIEQRAALVLVDVQGYPVAEVARILGVAEGTVKS--RCARGRARL 179
Query 184 AAGLSQHR-GEHPALTPLPVRRSIDPRARRYPTSG 217
A L R G AL+ +P +P ARR SG
Sbjct 180 AVLLGHLRTGSDEALSEVPAVTPGNPGARRDVRSG 214
>gi|145597086|ref|YP_001161383.1| sigma-70 region 2 domain-containing protein [Salinispora tropica
CNB-440]
gi|145306423|gb|ABP57005.1| sigma-70 region 2 domain protein [Salinispora tropica CNB-440]
Length=244
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/150 (57%), Positives = 104/150 (70%), Gaps = 10/150 (6%)
Query 20 SDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSF 79
SD +LL AHVAGDR AF +L RH +L +A T E+A DALQDA+LSAHR AG F
Sbjct 23 SDLDLLRAHVAGDRDAFAELLHRHQDRLWAVALRTLGDREEAADALQDALLSAHRAAGRF 82
Query 80 RYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLED-VYPVADRTAQVE---------TAI 129
R D+AV++WLHRIVVNACLDR+RR +AHPT PL D V+ VA T E TA+
Sbjct 83 RGDSAVTTWLHRIVVNACLDRIRRRQAHPTVPLPDGVHDVAGATGGAEPAAPAPDHDTAL 142
Query 130 AVQRALMRLPVEQRAAVVAVDMQGYSIADT 159
V+ AL LPVEQRAA++ VD+QGY +A+
Sbjct 143 VVREALAALPVEQRAALILVDVQGYPVAEV 172
>gi|159040575|ref|YP_001539828.1| ECF subfamily RNA polymerase sigma-24 factor [Salinispora arenicola
CNS-205]
gi|157919410|gb|ABW00838.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Salinispora
arenicola CNS-205]
Length=246
Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 86/154 (56%), Positives = 103/154 (67%), Gaps = 18/154 (11%)
Query 20 SDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSF 79
SD +LL AHVAGDR AF LF RH +L +A T E+A DALQDA+LSAHR AG F
Sbjct 23 SDLDLLRAHVAGDRDAFAGLFHRHRDRLWAVALRTLGDREEAADALQDALLSAHRAAGRF 82
Query 80 RYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLED--------------VYPVADRTAQV 125
R D+AV++WLHRIVVNACLDR+RR +AHPT PL D PVAD
Sbjct 83 RGDSAVTTWLHRIVVNACLDRIRRRQAHPTVPLPDGVRDHTGATGGTEPAAPVADH---- 138
Query 126 ETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADT 159
+TA+ V+ AL LPVEQRAA+V VD+QGY +A+
Sbjct 139 DTALVVREALAALPVEQRAALVLVDVQGYPVAEV 172
>gi|343928721|ref|ZP_08768166.1| RNA polymerase ECF-type sigma factor SigM [Gordonia alkanivorans
NBRC 16433]
gi|343761470|dbj|GAA15092.1| RNA polymerase ECF-type sigma factor SigM [Gordonia alkanivorans
NBRC 16433]
Length=191
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/155 (53%), Positives = 102/155 (66%), Gaps = 5/155 (3%)
Query 19 RSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGS 78
R+D +LL AHVAGD AF L RH L +A TS++ EDA D LQDA+L+AHR A
Sbjct 11 RTDEQLLGAHVAGDPGAFSVLVNRHLDYLWSVAIRTSQSPEDAADGLQDALLAAHRTAAD 70
Query 79 FRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPL--EDVYPVADRT---AQVETAIAVQR 133
FR DA V+SWLHRIVVNACLDR+RR A T PL DV +AD T + V+ ++++ R
Sbjct 71 FRSDARVTSWLHRIVVNACLDRIRRNNARKTVPLPEWDVMSIADTTDDISAVDLSVSIGR 130
Query 134 ALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRG 168
AL LP QR A+VAVD++GYS+A+ G G
Sbjct 131 ALHTLPEGQRQAIVAVDLEGYSVAEAASLLGVAEG 165
>gi|54027634|ref|YP_121876.1| RNA polymerase sigma factor SigM [Nocardia farcinica IFM 10152]
gi|54019142|dbj|BAD60512.1| putative sigma factor [Nocardia farcinica IFM 10152]
Length=212
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/147 (56%), Positives = 101/147 (69%), Gaps = 5/147 (3%)
Query 17 HERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGA 76
HE SD ELL AH AG +AF +L RRH+ L + A TS T EDA D+LQDA+LSAHR A
Sbjct 29 HELSDVELLQAHAAGRGHAFAELLRRHNDHLWQTALRTSYTREDAADSLQDALLSAHRTA 88
Query 77 GSFRYDAAVSSWLHRIVVNACLDRLRRAK---AHPTAP--LEDVYPVADRTAQVETAIAV 131
G+FR +A V SWLH IVVNACLDR+RR K A AP L + D A++E ++ V
Sbjct 89 GTFRAEAEVRSWLHAIVVNACLDRIRRNKTRRAVSFAPESLPERTEERDAFAELEMSLVV 148
Query 132 QRALMRLPVEQRAAVVAVDMQGYSIAD 158
RAL LP +QR A+VAVD++GYS+AD
Sbjct 149 DRALFSLPPDQRTALVAVDLEGYSVAD 175
>gi|238061895|ref|ZP_04606604.1| sigma-70 region 2 domain-containing protein [Micromonospora sp.
ATCC 39149]
gi|237883706|gb|EEP72534.1| sigma-70 region 2 domain-containing protein [Micromonospora sp.
ATCC 39149]
Length=258
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/159 (53%), Positives = 104/159 (66%), Gaps = 18/159 (11%)
Query 15 GRHER-SDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73
G ER SD +LL AHVAGDR AF +LF RH +L +A T E+A DALQDA+LSAH
Sbjct 3 GHGERTSDVDLLRAHVAGDRDAFTELFHRHRDRLWAVALRTIGDREEAADALQDALLSAH 62
Query 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLED-------------VYPVAD 120
R A FR D+AV++WLHRIV+NACLDR+RR +AHPT PL D PV D
Sbjct 63 RAAARFRGDSAVTTWLHRIVMNACLDRIRRRQAHPTVPLPDGTHGGPFAGGPEPAAPVQD 122
Query 121 RTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADT 159
+TA+ V++AL LP EQRAA++ D+QGY +A+
Sbjct 123 H----DTALVVRQALAELPAEQRAALILFDVQGYPVAEV 157
>gi|257057901|ref|YP_003135733.1| RNA polymerase, sigma subunit, ECF family [Saccharomonospora
viridis DSM 43017]
gi|256587773|gb|ACU98906.1| RNA polymerase, sigma subunit, ECF family [Saccharomonospora
viridis DSM 43017]
Length=200
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/154 (50%), Positives = 105/154 (69%), Gaps = 5/154 (3%)
Query 20 SDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSF 79
+DA+L+AAH AGD +AF++L RRH ++ +A T R E+A DALQDA +SA R A +F
Sbjct 7 TDADLIAAHAAGDPHAFNELVRRHRDRMWAVALRTVRDPEEAADALQDAFISAFRAASNF 66
Query 80 RYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVY---PVA--DRTAQVETAIAVQRA 134
R ++ V++WLHRIVVNACLDR+RR +A PT PL D P D A+ ET + +++A
Sbjct 67 RAESQVTTWLHRIVVNACLDRVRRRQARPTVPLPDTSHQEPAVPRDSMAERETRLIIKQA 126
Query 135 LMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRG 168
L +LP EQR +V VD++GYS+A+T G G
Sbjct 127 LEQLPEEQRVPIVLVDVEGYSVAETAQLLGIAEG 160
>gi|302870714|ref|YP_003839351.1| sigma-70 family RNA polymerase [Micromonospora aurantiaca ATCC
27029]
gi|302573573|gb|ADL49775.1| RNA polymerase sigma factor, sigma-70 family [Micromonospora
aurantiaca ATCC 27029]
Length=234
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/163 (52%), Positives = 102/163 (63%), Gaps = 21/163 (12%)
Query 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73
G + RSD ELL AH AGDR AF +LFRRH +L +A T E+A DALQDAMLSAH
Sbjct 6 GAQPGRSDLELLRAHAAGDRDAFTELFRRHRDRLWAVALRTIGDREEAADALQDAMLSAH 65
Query 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLED-----------------VY 116
R A FR D+AV++WLHRIVVNACLDR+RR + H T PL D
Sbjct 66 RAAARFRGDSAVTTWLHRIVVNACLDRIRRRQTHATVPLPDGVHTDGEPGRHTGGPEPAA 125
Query 117 PVADRTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADT 159
P D +TA+ V++AL LP EQRAA+V VD+QGY +A+
Sbjct 126 PAHDH----DTALVVRQALAALPAEQRAALVLVDVQGYPVAEV 164
>gi|302531342|ref|ZP_07283684.1| RNA polymerase sigma-W factor [Streptomyces sp. AA4]
gi|302440237|gb|EFL12053.1| RNA polymerase sigma-W factor [Streptomyces sp. AA4]
Length=221
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/146 (52%), Positives = 104/146 (72%), Gaps = 6/146 (4%)
Query 20 SDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSF 79
+DA+L+AAH AGD +AF +L RRH ++ +A T R E+A DALQ+A +SA R AG F
Sbjct 7 TDADLIAAHAAGDPHAFSELVRRHRDRMWAVALRTLRDPEEAADALQEAFISAFRAAGKF 66
Query 80 RYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPL----EDVYPVA--DRTAQVETAIAVQR 133
R ++ V++WLHRIVVNACLDR+RR +A PT PL E P A D A+ ET++ V++
Sbjct 67 RAESQVTTWLHRIVVNACLDRIRRRQARPTVPLPETGEFNEPAAPGDSMAEKETSLLVRK 126
Query 134 ALMRLPVEQRAAVVAVDMQGYSIADT 159
AL LP +QRA ++ VD++GYS+A+T
Sbjct 127 ALDELPEDQRAPILLVDVEGYSVAET 152
>gi|229491219|ref|ZP_04385047.1| RNA polymerase sigma factor SigM [Rhodococcus erythropolis SK121]
gi|229321957|gb|EEN87750.1| RNA polymerase sigma factor SigM [Rhodococcus erythropolis SK121]
Length=208
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/146 (55%), Positives = 98/146 (68%), Gaps = 5/146 (3%)
Query 18 ERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAG 77
E +D ELL AHV GDR+AF +L RH L +AR TS + EDA DALQ+ +LSAHR A
Sbjct 26 EATDFELLTAHVEGDRHAFRELLTRHQDHLWHVARRTSYSDEDAADALQEGLLSAHRKAA 85
Query 78 SFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPL-----EDVYPVADRTAQVETAIAVQ 132
FR DAAV SWLH IVVNACLDR+RR K+ L E+ D A V+ ++ V+
Sbjct 86 KFRGDAAVRSWLHTIVVNACLDRIRRNKSRSAFSLSSENAEEPRDHRDYAATVDMSLTVE 145
Query 133 RALMRLPVEQRAAVVAVDMQGYSIAD 158
+AL LP EQRAAVVAVD++GY +A+
Sbjct 146 QALASLPPEQRAAVVAVDVEGYPVAE 171
>gi|226309501|ref|YP_002769463.1| RNA polymerase ECF-type sigma factor SigM [Rhodococcus erythropolis
PR4]
gi|226188620|dbj|BAH36724.1| putative RNA polymerase ECF-type sigma factor SigM [Rhodococcus
erythropolis PR4]
Length=208
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/146 (55%), Positives = 99/146 (68%), Gaps = 5/146 (3%)
Query 18 ERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAG 77
E +D ELL AHVAGDR+AF +L RH L +AR TS + EDA DALQ+ +LSAHR A
Sbjct 26 EPTDFELLTAHVAGDRHAFRELLVRHQDHLWHVARRTSYSDEDAADALQEGLLSAHRKAA 85
Query 78 SFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPL-----EDVYPVADRTAQVETAIAVQ 132
FR DAAV SWLH IVVNACLDR+RR K+ L E+ D A V+ ++ V+
Sbjct 86 KFRGDAAVRSWLHTIVVNACLDRIRRNKSRAAFSLSSENAEEPRDHRDYAAGVDMSLTVE 145
Query 133 RALMRLPVEQRAAVVAVDMQGYSIAD 158
+AL LP EQRAAVVAVD++GY +A+
Sbjct 146 QALASLPPEQRAAVVAVDVEGYPVAE 171
>gi|315506951|ref|YP_004085838.1| ECF subfamily RNA polymerase sigma-24 subunit [Micromonospora
sp. L5]
gi|315413570|gb|ADU11687.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Micromonospora
sp. L5]
Length=234
Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/163 (51%), Positives = 101/163 (62%), Gaps = 21/163 (12%)
Query 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73
G + RSD ELL AH AGDR AF +LFRRH +L +A T E+A DALQDAMLSAH
Sbjct 6 GAQPGRSDLELLRAHAAGDRDAFTELFRRHRDRLWAVALRTIGDREEAADALQDAMLSAH 65
Query 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLED-----------------VY 116
R A FR D+AV++WLHRIVVNACLDR+RR + H T PL D
Sbjct 66 RAAARFRGDSAVTTWLHRIVVNACLDRIRRRQTHATVPLPDGVHTDGEPGRHTGGPEPAA 125
Query 117 PVADRTAQVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADT 159
P D +TA+ V++AL LP EQRAA+V VD+QGY + +
Sbjct 126 PSHDH----DTALVVRQALAALPAEQRAALVLVDVQGYPVVEV 164
>gi|317509437|ref|ZP_07967055.1| sigma-70 family RNA polymerase sigma factor [Segniliparus rugosus
ATCC BAA-974]
gi|316252266|gb|EFV11718.1| sigma-70 family RNA polymerase sigma factor [Segniliparus rugosus
ATCC BAA-974]
Length=202
Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/148 (53%), Positives = 103/148 (70%), Gaps = 9/148 (6%)
Query 20 SDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSF 79
SD ELL AHVAGD+ AF QLF+RH+ ++ +A T +E+A +A+QDAMLSAH+ A SF
Sbjct 15 SDKELLEAHVAGDKRAFAQLFQRHYNRMWAVALRTCFNAEEAAEAIQDAMLSAHQAAPSF 74
Query 80 RYDAAVSSWLHRIVVNACLDRLRRAKAHPTA-PLEDVYPVADRTA-------QVETAIAV 131
R DAAVS+WLHRIVVNACLDR RR ++ +A PL + + DR+A + A+AV
Sbjct 75 RGDAAVSTWLHRIVVNACLDRARRQRSRVSAVPLPEEEEL-DRSALRQRPASDADLALAV 133
Query 132 QRALMRLPVEQRAAVVAVDMQGYSIADT 159
+ AL LP E R +VAVD++GYSI +
Sbjct 134 RDALATLPYEHRVVLVAVDVEGYSIEEV 161
>gi|333922223|ref|YP_004495804.1| RNA polymerase sigma-70 factor [Amycolicicoccus subflavus DQS3-9A1]
gi|333484444|gb|AEF43004.1| RNA polymerase sigma-70 factor [Amycolicicoccus subflavus DQS3-9A1]
Length=201
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/146 (58%), Positives = 106/146 (73%), Gaps = 5/146 (3%)
Query 18 ERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAG 77
E SD+ELLAAHV+GD AF +L +RH L R+A+ TS + +DA DALQDA+LSAHR AG
Sbjct 12 EMSDSELLAAHVSGDSRAFTELVQRHRNYLWRVAKRTSYSVDDAADALQDALLSAHRMAG 71
Query 78 SFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADR-----TAQVETAIAVQ 132
SFR DAAV SWLHRIVVNACLDR+RR + T PL++ R ++E + V+
Sbjct 72 SFRADAAVLSWLHRIVVNACLDRIRRNRVRATVPLDEELSAHIRRRDDPIGELEFTLDVE 131
Query 133 RALMRLPVEQRAAVVAVDMQGYSIAD 158
RAL +LP EQRAAVVAVD++G S+A+
Sbjct 132 RALFQLPREQRAAVVAVDVEGLSVAE 157
>gi|271970539|ref|YP_003344735.1| ECF subfamily RNA polymerase sigma-24 subunit [Streptosporangium
roseum DSM 43021]
gi|270513714|gb|ACZ91992.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Streptosporangium
roseum DSM 43021]
Length=201
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/145 (51%), Positives = 98/145 (68%), Gaps = 6/145 (4%)
Query 20 SDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSF 79
SDA+LL H+AGD +AF ++ +RH ++ +A T ++A DA+QDA +SA+R A SF
Sbjct 7 SDADLLTRHIAGDPHAFSEIVKRHRDRMWAVALRTLGDPDEAADAVQDAFVSAYRKADSF 66
Query 80 RYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDV------YPVADRTAQVETAIAVQR 133
R +AAV++WLHRIVVNACLDR+RR P A E V PV D+TA+ E ++ V
Sbjct 67 RGEAAVTTWLHRIVVNACLDRMRRKSVRPVADDELVEAAERDTPVLDQTAEREVSMEVSA 126
Query 134 ALMRLPVEQRAAVVAVDMQGYSIAD 158
AL LP +QRAA+V VDM GYS+ D
Sbjct 127 ALKLLPADQRAALVLVDMMGYSVED 151
>gi|256398130|ref|YP_003119694.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Catenulispora
acidiphila DSM 44928]
gi|256364356|gb|ACU77853.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Catenulispora
acidiphila DSM 44928]
Length=219
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/145 (54%), Positives = 96/145 (67%), Gaps = 6/145 (4%)
Query 21 DAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFR 80
D LLA HV GD AF +LFRRH +L +A T EDA DALQDAMLSA+R AGSFR
Sbjct 13 DRALLARHVEGDGEAFGELFRRHRDRLWAVALRTLSDPEDAADALQDAMLSAYRAAGSFR 72
Query 81 YDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVY------PVADRTAQVETAIAVQRA 134
D+AV++WLHR+VVNACLDR+RR + PT PL +V V D + +A+ A
Sbjct 73 GDSAVTTWLHRVVVNACLDRMRRRGSRPTVPLPEVETEYARPTVTDEITTTDLRLALASA 132
Query 135 LMRLPVEQRAAVVAVDMQGYSIADT 159
L LP EQR A+V VD++GYS+ +T
Sbjct 133 LATLPEEQRVALVMVDVEGYSVDET 157
>gi|296271525|ref|YP_003654157.1| ECF subfamily RNA polymerase sigma-24 [Thermobispora bispora
DSM 43833]
gi|296094312|gb|ADG90264.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Thermobispora
bispora DSM 43833]
Length=213
Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/145 (52%), Positives = 96/145 (67%), Gaps = 6/145 (4%)
Query 20 SDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSF 79
SDA+LL H+ GDRYAF +L RRH ++ +A T ++A DA+QDA +SA+R A SF
Sbjct 19 SDADLLNRHLNGDRYAFSELVRRHRDRMWAVALRTLGDPDEAADAVQDAFVSAYRKAHSF 78
Query 80 RYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDV------YPVADRTAQVETAIAVQR 133
R +AAV++WLHRIVVNACLDRLRR P E + PV D+ A+ + ++ V
Sbjct 79 RGEAAVTTWLHRIVVNACLDRLRRKTVRPVTDDELMEVAERESPVTDQAAERDISMEVTG 138
Query 134 ALMRLPVEQRAAVVAVDMQGYSIAD 158
AL LP EQRAA+V VDM GYS+ D
Sbjct 139 ALRLLPAEQRAALVLVDMLGYSVED 163
>gi|317126723|ref|YP_004100835.1| RNA polymerase, sigma subunit, ECF family [Intrasporangium calvum
DSM 43043]
gi|315590811|gb|ADU50108.1| RNA polymerase, sigma subunit, ECF family [Intrasporangium calvum
DSM 43043]
Length=196
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/151 (49%), Positives = 96/151 (64%), Gaps = 0/151 (0%)
Query 18 ERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAG 77
E SD++LLA HVAGD +AF +LFRRH ++ +A T R E A DA+QD +SA R AG
Sbjct 11 EASDSDLLARHVAGDDHAFGELFRRHKDRMWAVALRTCRDPEIAADAVQDGFISAFRRAG 70
Query 78 SFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIAVQRALMR 137
SFR ++AV++WLHRI+VNACLDRLRR + P D+ D A E + ++ A+ R
Sbjct 71 SFRGESAVTTWLHRIIVNACLDRLRRIRPTTQLPEYDLSDPRDHHASTEVRLDIEEAMAR 130
Query 138 LPVEQRAAVVAVDMQGYSIADTRPDAGRGRG 168
LP QRAA+V VDM G +A+ G G
Sbjct 131 LPDGQRAALVLVDMHGVPVAEAAAILGVAEG 161
>gi|269129145|ref|YP_003302515.1| ECF subfamily RNA polymerase sigma-24 subunit [Thermomonospora
curvata DSM 43183]
gi|268314103|gb|ACZ00478.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Thermomonospora
curvata DSM 43183]
Length=209
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 90/148 (61%), Gaps = 7/148 (4%)
Query 18 ERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAG 77
E SD EL++ H GD +AF QL RH ++ +A T E+A DALQDA LSA+R AG
Sbjct 11 ELSDKELMSRHAQGDPHAFGQLIVRHRERMWAVAMRTLGDQEEAADALQDAFLSAYRAAG 70
Query 78 SFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVA-------DRTAQVETAIA 130
+R DAAV++WLHRIVVNACLDRLRR P PL D + D T T +
Sbjct 71 RYRGDAAVTTWLHRIVVNACLDRLRRKSIRPATPLGDEAKIDALAPKLPDPTEGHGTLLE 130
Query 131 VQRALMRLPVEQRAAVVAVDMQGYSIAD 158
V AL LP EQRAA++ VDM GY + D
Sbjct 131 VTAALGELPFEQRAALILVDMLGYGVDD 158
>gi|152968440|ref|YP_001364224.1| ECF family RNA polymerase sigma-24 subunit [Kineococcus radiotolerans
SRS30216]
gi|151362957|gb|ABS05960.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Kineococcus
radiotolerans SRS30216]
Length=200
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/155 (52%), Positives = 98/155 (64%), Gaps = 15/155 (9%)
Query 19 RSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGS 78
RSDAELLAAHVAGD AF ++ RRH +L +A T+ E+A DALQDA++SA R AG
Sbjct 13 RSDAELLAAHVAGDPEAFGEVVRRHRDRLWAVALRTTGDREEAADALQDALVSALRAAGR 72
Query 79 FRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLED---------------VYPVADRTA 123
FR ++AV++WLHRIVVNACLDR RR PT PLE+ + D T
Sbjct 73 FRGESAVTTWLHRIVVNACLDRARRRAVRPTRPLEEEVGPGGEESARTGAALAVAEDATP 132
Query 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIAD 158
VETA+ V AL RLP QRAA+V VDM +A+
Sbjct 133 HVETALDVTSALARLPEAQRAALVLVDMYDVPVAE 167
>gi|291303864|ref|YP_003515142.1| ECF subfamily RNA polymerase sigma-24 subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290573084|gb|ADD46049.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Stackebrandtia
nassauensis DSM 44728]
Length=212
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/145 (52%), Positives = 94/145 (65%), Gaps = 7/145 (4%)
Query 21 DAELLAAH-VAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSF 79
D ELL H GDR AF +LFRRH +L +A T E+A DALQDAM++A+R A F
Sbjct 9 DKELLRRHATGGDRDAFGELFRRHRDRLWAVALRTLSDPEEAADALQDAMVNAYRAAARF 68
Query 80 RYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLED-----VYPVADRTAQVETAIAVQRA 134
R D+AV++WLHRIVVNACLDR+RR +A P P+ D P AD A +AV++A
Sbjct 69 RGDSAVTTWLHRIVVNACLDRVRRKQARPAVPMSDQLPEPAMPGAD-PADAAGVLAVRQA 127
Query 135 LMRLPVEQRAAVVAVDMQGYSIADT 159
L LP +QRA VV +DM GY +AD
Sbjct 128 LAELPFDQRAVVVYIDMLGYPVADV 152
>gi|326905744|gb|EGE52677.1| alternative RNA polymerase sigma factor sigM [Mycobacterium tuberculosis
W-148]
Length=215
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/63 (100%), Positives = 63/63 (100%), Gaps = 0/63 (0%)
Query 160 RPDAGRGRGHRQEPLRPGAGPPSAAAGLSQHRGEHPALTPLPVRRSIDPRARRYPTSGYC 219
RPDAGRGRGHRQEPLRPGAGPPSAAAGLSQHRGEHPALTPLPVRRSIDPRARRYPTSGYC
Sbjct 153 RPDAGRGRGHRQEPLRPGAGPPSAAAGLSQHRGEHPALTPLPVRRSIDPRARRYPTSGYC 212
Query 220 HRA 222
HRA
Sbjct 213 HRA 215
Lambda K H
0.322 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 279760868288
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40