BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3920c
Length=187
Score E
Sequences producing significant alignments: (Bits) Value
gi|15611056|ref|NP_218437.1| hypothetical protein Rv3920c [Mycob... 356 9e-97
gi|340628890|ref|YP_004747342.1| hypothetical protein MCAN_39401... 355 2e-96
gi|289748458|ref|ZP_06507836.1| hypothetical protein TBDG_00346 ... 354 3e-96
gi|306778284|ref|ZP_07416621.1| hypothetical protein TMAG_00667 ... 353 5e-96
gi|31795093|ref|NP_857586.1| hypothetical protein Mb3951c [Mycob... 353 6e-96
gi|183985454|ref|YP_001853745.1| hypothetical protein MMAR_5484 ... 239 2e-61
gi|118620075|ref|YP_908407.1| hypothetical protein MUL_5073 [Myc... 235 2e-60
gi|226309515|ref|YP_002769477.1| hypothetical protein RER_60300 ... 233 8e-60
gi|312142023|ref|YP_004009359.1| hypothetical protein REQ_47420 ... 232 2e-59
gi|336459811|gb|EGO38725.1| putative RNA-binding protein [Mycoba... 232 2e-59
gi|111020650|ref|YP_703622.1| RNA-binding protein Jag [Rhodococc... 232 2e-59
gi|118467028|ref|YP_884419.1| R3H domain-containing protein [Myc... 230 6e-59
gi|226362890|ref|YP_002780670.1| hypothetical protein ROP_34780 ... 229 2e-58
gi|333922233|ref|YP_004495814.1| hypothetical protein AS9A_4582 ... 228 3e-58
gi|254818674|ref|ZP_05223675.1| R3H domain-containing protein [M... 227 6e-58
gi|54027643|ref|YP_121885.1| hypothetical protein nfa56690 [Noca... 227 7e-58
gi|296167147|ref|ZP_06849554.1| R3H domain protein [Mycobacteriu... 223 7e-57
gi|315446822|ref|YP_004079701.1| RNA-binding protein [Mycobacter... 223 1e-56
gi|145221426|ref|YP_001132104.1| single-stranded nucleic acid bi... 223 1e-56
gi|240168404|ref|ZP_04747063.1| hypothetical protein MkanA1_0377... 223 1e-56
gi|296141903|ref|YP_003649146.1| single-stranded nucleic acid bi... 219 1e-55
gi|15828467|ref|NP_302730.1| hypothetical protein ML2709 [Mycoba... 218 3e-55
gi|326383904|ref|ZP_08205588.1| single-stranded nucleic acid bin... 216 1e-54
gi|120407003|ref|YP_956832.1| single-stranded nucleic acid bindi... 216 1e-54
gi|342862348|ref|ZP_08718989.1| R3H domain-containing protein [M... 214 4e-54
gi|257057912|ref|YP_003135744.1| putative RNA-binding protein [S... 211 4e-53
gi|333992983|ref|YP_004525597.1| hypothetical protein JDM601_434... 208 3e-52
gi|343928730|ref|ZP_08768175.1| hypothetical protein GOALK_120_0... 207 7e-52
gi|41410444|ref|NP_963280.1| hypothetical protein MAP4346c [Myco... 205 2e-51
gi|108802368|ref|YP_642565.1| single-stranded nucleic acid bindi... 205 3e-51
gi|169632025|ref|YP_001705674.1| hypothetical protein MAB_4952c ... 203 1e-50
gi|118471352|ref|YP_891134.1| R3H domain-containing protein [Myc... 199 2e-49
gi|324999877|ref|ZP_08120989.1| predicted RNA-binding protein [P... 192 3e-47
gi|284993435|ref|YP_003411990.1| single-stranded nucleic acid bi... 189 2e-46
gi|262204658|ref|YP_003275866.1| single-stranded nucleic acid-bi... 188 3e-46
gi|319949436|ref|ZP_08023497.1| RNA-binding protein Jag [Dietzia... 188 3e-46
gi|111226213|ref|YP_717007.1| hypothetical protein FRAAL6880 [Fr... 184 4e-45
gi|158319054|ref|YP_001511562.1| single-stranded nucleic acid bi... 184 7e-45
gi|288916714|ref|ZP_06411089.1| single-stranded nucleic acid bin... 183 8e-45
gi|302535578|ref|ZP_07287920.1| R3H domain-containing protein [S... 183 9e-45
gi|258655507|ref|YP_003204663.1| single-stranded nucleic acid bi... 182 2e-44
gi|119718913|ref|YP_925878.1| single-stranded nucleic acid bindi... 181 6e-44
gi|297158786|gb|ADI08498.1| Jag-like protein [Streptomyces bingc... 181 7e-44
gi|337767116|emb|CCB75827.1| R3H domain-containing protein [Stre... 179 1e-43
gi|29830854|ref|NP_825488.1| Jag-like protein [Streptomyces aver... 179 2e-43
gi|297193300|ref|ZP_06910698.1| R3H domain-containing protein [S... 179 2e-43
gi|328883707|emb|CCA56946.1| RNA-binding protein Jag [Streptomyc... 179 2e-43
gi|297200934|ref|ZP_06918331.1| R3H domain-containing protein [S... 178 3e-43
gi|294630333|ref|ZP_06708893.1| R3H domain-containing protein [S... 178 3e-43
gi|302543970|ref|ZP_07296312.1| R3H domain-containing protein [S... 178 4e-43
>gi|15611056|ref|NP_218437.1| hypothetical protein Rv3920c [Mycobacterium tuberculosis H37Rv]
gi|15843554|ref|NP_338591.1| R3H domain-containing protein [Mycobacterium tuberculosis CDC1551]
gi|148663787|ref|YP_001285310.1| putative Jag protein [Mycobacterium tuberculosis H37Ra]
59 more sequence titles
Length=187
Score = 356 bits (913), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 187/187 (100%), Positives = 187/187 (100%), Gaps = 0/187 (0%)
Query 1 MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG 60
MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG
Sbjct 1 MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG 60
Query 61 DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW 120
DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW
Sbjct 61 DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW 120
Query 121 RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER 180
RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER
Sbjct 121 RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER 180
Query 181 RVVVLRD 187
RVVVLRD
Sbjct 181 RVVVLRD 187
>gi|340628890|ref|YP_004747342.1| hypothetical protein MCAN_39401 [Mycobacterium canettii CIPT
140010059]
gi|340007080|emb|CCC46271.1| hypothetical protein similar to JAG protein [Mycobacterium canettii
CIPT 140010059]
Length=187
Score = 355 bits (910), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 186/187 (99%), Positives = 187/187 (100%), Gaps = 0/187 (0%)
Query 1 MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG 60
MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLD+LDFDG
Sbjct 1 MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDLLDFDG 60
Query 61 DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW 120
DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW
Sbjct 61 DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW 120
Query 121 RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER 180
RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER
Sbjct 121 RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER 180
Query 181 RVVVLRD 187
RVVVLRD
Sbjct 181 RVVVLRD 187
>gi|289748458|ref|ZP_06507836.1| hypothetical protein TBDG_00346 [Mycobacterium tuberculosis T92]
gi|289689045|gb|EFD56474.1| hypothetical protein TBDG_00346 [Mycobacterium tuberculosis T92]
Length=187
Score = 354 bits (909), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 186/187 (99%), Positives = 186/187 (99%), Gaps = 0/187 (0%)
Query 1 MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG 60
MADADTTDFDVD EAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG
Sbjct 1 MADADTTDFDVDVEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG 60
Query 61 DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW 120
DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW
Sbjct 61 DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW 120
Query 121 RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER 180
RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER
Sbjct 121 RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER 180
Query 181 RVVVLRD 187
RVVVLRD
Sbjct 181 RVVVLRD 187
>gi|306778284|ref|ZP_07416621.1| hypothetical protein TMAG_00667 [Mycobacterium tuberculosis SUMu001]
gi|306974403|ref|ZP_07487064.1| hypothetical protein TMJG_01176 [Mycobacterium tuberculosis SUMu010]
gi|307082111|ref|ZP_07491281.1| hypothetical protein TMKG_01175 [Mycobacterium tuberculosis SUMu011]
gi|308213434|gb|EFO72833.1| hypothetical protein TMAG_00667 [Mycobacterium tuberculosis SUMu001]
gi|308356298|gb|EFP45149.1| hypothetical protein TMJG_01176 [Mycobacterium tuberculosis SUMu010]
gi|308360185|gb|EFP49036.1| hypothetical protein TMKG_01175 [Mycobacterium tuberculosis SUMu011]
Length=187
Score = 353 bits (907), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 186/187 (99%), Positives = 187/187 (100%), Gaps = 0/187 (0%)
Query 1 MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG 60
MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG
Sbjct 1 MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG 60
Query 61 DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW 120
DIDLDVEGNRAVVSIDGSDDL+KLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW
Sbjct 61 DIDLDVEGNRAVVSIDGSDDLDKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW 120
Query 121 RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER 180
RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER
Sbjct 121 RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER 180
Query 181 RVVVLRD 187
RVVVLRD
Sbjct 181 RVVVLRD 187
>gi|31795093|ref|NP_857586.1| hypothetical protein Mb3951c [Mycobacterium bovis AF2122/97]
gi|121635906|ref|YP_976129.1| hypothetical protein BCG_0026c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|121639831|ref|YP_980055.1| hypothetical protein BCG_3978c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
10 more sequence titles
Length=187
Score = 353 bits (906), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 186/187 (99%), Positives = 186/187 (99%), Gaps = 0/187 (0%)
Query 1 MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG 60
MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG
Sbjct 1 MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG 60
Query 61 DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW 120
DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGV SRLMLDIARW
Sbjct 61 DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVWSRLMLDIARW 120
Query 121 RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER 180
RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER
Sbjct 121 RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER 180
Query 181 RVVVLRD 187
RVVVLRD
Sbjct 181 RVVVLRD 187
>gi|183985454|ref|YP_001853745.1| hypothetical protein MMAR_5484 [Mycobacterium marinum M]
gi|183178780|gb|ACC43890.1| conserved protein [Mycobacterium marinum M]
Length=182
Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/189 (81%), Positives = 164/189 (87%), Gaps = 9/189 (4%)
Query 1 MADADTTDF--DVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDF 58
M +AD T+ DV +AP A A E DD EERLVAEGEIAGDYLEELLD+LDF
Sbjct 1 MTEADITELESDVAEKAP-------PADGAAEGDDLEERLVAEGEIAGDYLEELLDLLDF 53
Query 59 DGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIA 118
DGDIDLDVEG+RAVVSIDG +DLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIA
Sbjct 54 DGDIDLDVEGSRAVVSIDGGNDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIA 113
Query 119 RWRRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEP 178
WRR+RREELAAL D+VARRVA++G+REEL PMTPFERKIVHDAVAAVPGVHSESEGVEP
Sbjct 114 SWRRKRREELAALGDKVARRVADSGEREELSPMTPFERKIVHDAVAAVPGVHSESEGVEP 173
Query 179 ERRVVVLRD 187
RRVVVLRD
Sbjct 174 ARRVVVLRD 182
>gi|118620075|ref|YP_908407.1| hypothetical protein MUL_5073 [Mycobacterium ulcerans Agy99]
gi|118572185|gb|ABL06936.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=182
Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 152/189 (81%), Positives = 163/189 (87%), Gaps = 9/189 (4%)
Query 1 MADADTTDFDVDAEAPGGGVREDT--ATDADEADDQEERLVAEGEIAGDYLEELLDVLDF 58
M +AD T+ + D V E T A A E DD EERLVAEGEIAGDYLEELLD+LDF
Sbjct 1 MTEADITELESD-------VAEKTPPADGAAEGDDLEERLVAEGEIAGDYLEELLDLLDF 53
Query 59 DGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIA 118
DGDIDLDVEG+RAVVSIDG +DLNKLVGRGGEVLDALQELT LAVHQKTGVRSRLMLDIA
Sbjct 54 DGDIDLDVEGSRAVVSIDGGNDLNKLVGRGGEVLDALQELTWLAVHQKTGVRSRLMLDIA 113
Query 119 RWRRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEP 178
WRR+RREELAAL D+VARRVA++G+REEL PMTPFERKIVHDAVAAVPGVHSESEGVEP
Sbjct 114 SWRRKRREELAALGDKVARRVADSGEREELSPMTPFERKIVHDAVAAVPGVHSESEGVEP 173
Query 179 ERRVVVLRD 187
RRVVVLRD
Sbjct 174 ARRVVVLRD 182
>gi|226309515|ref|YP_002769477.1| hypothetical protein RER_60300 [Rhodococcus erythropolis PR4]
gi|229491167|ref|ZP_04384995.1| r3H domain-containing protein [Rhodococcus erythropolis SK121]
gi|226188634|dbj|BAH36738.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
gi|229321905|gb|EEN87698.1| r3H domain-containing protein [Rhodococcus erythropolis SK121]
Length=187
Score = 233 bits (595), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 121/150 (81%), Positives = 129/150 (86%), Gaps = 0/150 (0%)
Query 38 LVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQE 97
L+ EGEIAGDYLE+LLDVLDFDGDIDLDVEG+RA+VSIDG DDL KLVGR GEVLDALQE
Sbjct 38 LIEEGEIAGDYLEQLLDVLDFDGDIDLDVEGDRAIVSIDGGDDLTKLVGRKGEVLDALQE 97
Query 98 LTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMTPFERK 157
LTRLAV Q TG RSRLMLDIA WR RRE L+AL E A+RV ETG+REEL PMTPFERK
Sbjct 98 LTRLAVQQSTGERSRLMLDIAGWRAGRREALSALGAEAAQRVLETGEREELAPMTPFERK 157
Query 158 IVHDAVAAVPGVHSESEGVEPERRVVVLRD 187
IVHDAVA V GV SESEG EP RRVVVL+D
Sbjct 158 IVHDAVAKVAGVSSESEGAEPSRRVVVLKD 187
>gi|312142023|ref|YP_004009359.1| hypothetical protein REQ_47420 [Rhodococcus equi 103S]
gi|325677526|ref|ZP_08157190.1| SpoIIIJ-associated protein Jag [Rhodococcus equi ATCC 33707]
gi|311891362|emb|CBH50683.1| conserved hypothetical protein [Rhodococcus equi 103S]
gi|325551773|gb|EGD21471.1| SpoIIIJ-associated protein Jag [Rhodococcus equi ATCC 33707]
Length=183
Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/159 (77%), Positives = 133/159 (84%), Gaps = 0/159 (0%)
Query 29 DEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRG 88
D A D E+ L+ EGEIAGDYLE+LLDVLD+DGDIDLDVEG+RAVVSIDG DDL KLVGR
Sbjct 25 DVATDGEDDLIEEGEIAGDYLEQLLDVLDYDGDIDLDVEGDRAVVSIDGGDDLAKLVGRK 84
Query 89 GEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREEL 148
GEVLDALQELTRLAV Q TGVRSRLMLD+A WR RR EL+AL E A RV E+G+RE L
Sbjct 85 GEVLDALQELTRLAVQQSTGVRSRLMLDVAGWRAGRRAELSALGKEAAERVLESGERESL 144
Query 149 VPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVVLRD 187
PMTPFERKIVHDAVA V GV SESEG EP RRVVV++D
Sbjct 145 APMTPFERKIVHDAVAKVAGVSSESEGAEPNRRVVVIKD 183
>gi|336459811|gb|EGO38725.1| putative RNA-binding protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=183
Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 160/187 (86%), Positives = 167/187 (90%), Gaps = 4/187 (2%)
Query 1 MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG 60
MADADTT+ ++D AP E D DEADD EERLVAEGEIAGDYLEELLD+LDFDG
Sbjct 1 MADADTTERELDTAAPA----EPEPADGDEADDLEERLVAEGEIAGDYLEELLDLLDFDG 56
Query 61 DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW 120
DIDLDVEG+RAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIA W
Sbjct 57 DIDLDVEGSRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIASW 116
Query 121 RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER 180
RRRRREELAAL D+VARRV E+G REELVPMTPFERKIVHDAVAAVPGVHSESEGVEP R
Sbjct 117 RRRRREELAALGDKVARRVLESGQREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPSR 176
Query 181 RVVVLRD 187
RVVVL D
Sbjct 177 RVVVLHD 183
>gi|111020650|ref|YP_703622.1| RNA-binding protein Jag [Rhodococcus jostii RHA1]
gi|110820180|gb|ABG95464.1| probable RNA-binding protein Jag [Rhodococcus jostii RHA1]
Length=184
Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/185 (70%), Positives = 138/185 (75%), Gaps = 10/185 (5%)
Query 3 DADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDI 62
D D TD + P DT D+D D L+ EGEIAGDYLE+LLDVLDFDGDI
Sbjct 10 DGDETDVTATTQNP------DTEVDSDSDD----YLIEEGEIAGDYLEQLLDVLDFDGDI 59
Query 63 DLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRR 122
DLDVEG+RAVVSIDG DDL KLVGR GEVLDALQELTRLAV Q TG RSRLMLDIA WR
Sbjct 60 DLDVEGDRAVVSIDGGDDLTKLVGRKGEVLDALQELTRLAVQQATGERSRLMLDIAGWRA 119
Query 123 RRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRV 182
RR EL L ARRV E+G+REEL PMTPFERKIVHDAVA V GV SESEG EP RRV
Sbjct 120 GRRAELTELGSSAARRVLESGEREELAPMTPFERKIVHDAVAKVDGVSSESEGAEPSRRV 179
Query 183 VVLRD 187
VV++D
Sbjct 180 VVIKD 184
>gi|118467028|ref|YP_884419.1| R3H domain-containing protein [Mycobacterium avium 104]
gi|254777658|ref|ZP_05219174.1| R3H domain-containing protein [Mycobacterium avium subsp. avium
ATCC 25291]
gi|6969270|gb|AAF33691.1| unknown [Mycobacterium avium subsp. paratuberculosis]
gi|118168315|gb|ABK69212.1| R3H domain-containing protein [Mycobacterium avium 104]
Length=183
Score = 230 bits (587), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 159/187 (86%), Positives = 166/187 (89%), Gaps = 4/187 (2%)
Query 1 MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG 60
MADADTT+ ++D AP E D DEADD EERLVAEGEIAGDYLEELLD+LDFDG
Sbjct 1 MADADTTERELDTAAPA----EPEPADGDEADDLEERLVAEGEIAGDYLEELLDLLDFDG 56
Query 61 DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW 120
DIDLDVEG+RAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIA W
Sbjct 57 DIDLDVEGSRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIASW 116
Query 121 RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER 180
RRRRREELAAL D+VARRV E+G REEL PMTPFERKIVHDAVAAVPGVHSESEGVEP R
Sbjct 117 RRRRREELAALGDKVARRVLESGQREELAPMTPFERKIVHDAVAAVPGVHSESEGVEPSR 176
Query 181 RVVVLRD 187
RVVVL D
Sbjct 177 RVVVLHD 183
>gi|226362890|ref|YP_002780670.1| hypothetical protein ROP_34780 [Rhodococcus opacus B4]
gi|226241377|dbj|BAH51725.1| hypothetical protein [Rhodococcus opacus B4]
Length=169
Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/155 (78%), Positives = 129/155 (84%), Gaps = 0/155 (0%)
Query 33 DQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVL 92
D ++ L+ EGEIAGDYLE+LLDVLDFDGDIDLDVEG+RAVVSIDG DDL KLVGR GEVL
Sbjct 15 DSDDYLIEEGEIAGDYLEQLLDVLDFDGDIDLDVEGDRAVVSIDGGDDLTKLVGRKGEVL 74
Query 93 DALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMT 152
DALQELTRLAV Q TG RSRLMLDIA WR RR EL L ARRV E+G+REEL PMT
Sbjct 75 DALQELTRLAVQQATGERSRLMLDIAGWRAGRRAELTELGSSAARRVLESGEREELAPMT 134
Query 153 PFERKIVHDAVAAVPGVHSESEGVEPERRVVVLRD 187
PFERKIVHDAVA V GV SESEG EP RRVVV++D
Sbjct 135 PFERKIVHDAVAKVDGVSSESEGAEPSRRVVVIKD 169
>gi|333922233|ref|YP_004495814.1| hypothetical protein AS9A_4582 [Amycolicicoccus subflavus DQS3-9A1]
gi|333484454|gb|AEF43014.1| hypothetical protein AS9A_4582 [Amycolicicoccus subflavus DQS3-9A1]
Length=169
Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 121/165 (74%), Positives = 137/165 (84%), Gaps = 1/165 (0%)
Query 22 EDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDL 81
E T T +D DD EERLV EGE+AGDYLE+LLD+LD+DGDIDLDVEG+RA+V+IDGS+DL
Sbjct 5 ESTVT-SDAGDDLEERLVEEGELAGDYLEQLLDILDYDGDIDLDVEGDRAIVAIDGSEDL 63
Query 82 NKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAE 141
KLVGR GEVLDALQELTRLAV Q TGVRSRLMLD+A WR +RR +LAA VA+RV
Sbjct 64 TKLVGRHGEVLDALQELTRLAVQQGTGVRSRLMLDVAGWRAQRRNDLAAHGATVAQRVLN 123
Query 142 TGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVVLR 186
TG +E L PMTPFERKIVHDAVA V GV SESEG EP RRVVV++
Sbjct 124 TGVQESLKPMTPFERKIVHDAVAGVEGVRSESEGEEPNRRVVVMK 168
>gi|254818674|ref|ZP_05223675.1| R3H domain-containing protein [Mycobacterium intracellulare ATCC
13950]
Length=188
Score = 227 bits (579), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 158/188 (85%), Positives = 166/188 (89%), Gaps = 1/188 (0%)
Query 1 MADADTTDFDVDAEAPGGGVREDTAT-DADEADDQEERLVAEGEIAGDYLEELLDVLDFD 59
M DADTT+ DVD + EDT DA+E DD EERLVAEGEIAGDYLEELLD+LDFD
Sbjct 1 MTDADTTERDVDTDLETQAAAEDTVQGDAEEGDDLEERLVAEGEIAGDYLEELLDLLDFD 60
Query 60 GDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIAR 119
GDIDLDVEG+RAVVSIDG DDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIA
Sbjct 61 GDIDLDVEGSRAVVSIDGGDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIAS 120
Query 120 WRRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPE 179
WRRRRREELAAL D+VARRV E+G+REEL PMTPFERKIVHDAVAAVPGVHSESEGVEP
Sbjct 121 WRRRRREELAALGDKVARRVLESGEREELAPMTPFERKIVHDAVAAVPGVHSESEGVEPS 180
Query 180 RRVVVLRD 187
RRVVVL D
Sbjct 181 RRVVVLHD 188
>gi|54027643|ref|YP_121885.1| hypothetical protein nfa56690 [Nocardia farcinica IFM 10152]
gi|54019151|dbj|BAD60521.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=172
Score = 227 bits (578), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 121/157 (78%), Positives = 131/157 (84%), Gaps = 0/157 (0%)
Query 29 DEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRG 88
D D EE L+ EGEIAGDYLE+LLDVLDFDGDIDLDVEG+RAVVSIDG DL+KLVGR
Sbjct 14 DLVSDAEEALIEEGEIAGDYLEQLLDVLDFDGDIDLDVEGDRAVVSIDGGRDLSKLVGRN 73
Query 89 GEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREEL 148
GEVLDALQELTRLAV Q TGVRSRLMLD+A WR +RREEL+AL A+RV E+G E L
Sbjct 74 GEVLDALQELTRLAVQQVTGVRSRLMLDVAGWRAKRREELSALGTAAAQRVLESGAPEAL 133
Query 149 VPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVVL 185
PMTPFERKIVHDAVAAV GV SESEGVEP R VVV+
Sbjct 134 EPMTPFERKIVHDAVAAVEGVSSESEGVEPNRHVVVV 170
>gi|296167147|ref|ZP_06849554.1| R3H domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295897469|gb|EFG77068.1| R3H domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=189
Score = 223 bits (569), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 158/189 (84%), Positives = 166/189 (88%), Gaps = 2/189 (1%)
Query 1 MADADTTDFDVDAEAP--GGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDF 58
M DADTT + DAE+ E+ A AD+ DD EERLVAEGEIAGDYLEELLD+LDF
Sbjct 1 MTDADTTTTERDAESDVDTESTVENGAEAADDFDDLEERLVAEGEIAGDYLEELLDLLDF 60
Query 59 DGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIA 118
DGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIA
Sbjct 61 DGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIA 120
Query 119 RWRRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEP 178
WRRRRREELAAL D+VARRV E+G+REEL PMTPFERKIVHDAVAAVPGVHSESEGVEP
Sbjct 121 SWRRRRREELAALGDKVARRVLESGEREELAPMTPFERKIVHDAVAAVPGVHSESEGVEP 180
Query 179 ERRVVVLRD 187
RRVVVL D
Sbjct 181 ARRVVVLHD 189
>gi|315446822|ref|YP_004079701.1| RNA-binding protein [Mycobacterium sp. Spyr1]
gi|315265125|gb|ADU01867.1| predicted RNA-binding protein [Mycobacterium sp. Spyr1]
Length=205
Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 151/193 (79%), Positives = 161/193 (84%), Gaps = 9/193 (4%)
Query 4 ADTTDFDVDAEAPGG--GVREDT-----ATDADEA--DDQEERLVAEGEIAGDYLEELLD 54
A TTD A+ PG GV T +TD EA +D E+RLVAEGEIAGDYLEELLD
Sbjct 13 AGTTDVLAAADEPGTTEGVGTSTEGAEVSTDGAEAPVEDLEDRLVAEGEIAGDYLEELLD 72
Query 55 VLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLM 114
+LDFDGDIDLDVEG+RAVVSIDG DLNKLVGR GEVLDALQELTRLAVHQKTG RSRLM
Sbjct 73 LLDFDGDIDLDVEGDRAVVSIDGGGDLNKLVGRKGEVLDALQELTRLAVHQKTGERSRLM 132
Query 115 LDIARWRRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESE 174
LDIA+WRRRRR+ELAAL D+VARRV ETGDREEL PMTPFERKIVHDAVAAV GVHSESE
Sbjct 133 LDIAQWRRRRRDELAALGDKVARRVLETGDREELSPMTPFERKIVHDAVAAVDGVHSESE 192
Query 175 GVEPERRVVVLRD 187
GVEP RRVV+L D
Sbjct 193 GVEPSRRVVILAD 205
>gi|145221426|ref|YP_001132104.1| single-stranded nucleic acid binding R3H domain-containing protein
[Mycobacterium gilvum PYR-GCK]
gi|145213912|gb|ABP43316.1| single-stranded nucleic acid binding R3H domain protein [Mycobacterium
gilvum PYR-GCK]
Length=205
Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 150/193 (78%), Positives = 161/193 (84%), Gaps = 9/193 (4%)
Query 4 ADTTDFDVDAEAPGG--GVREDT-----ATDADEA--DDQEERLVAEGEIAGDYLEELLD 54
A TTD A+ PG GV T +TD EA +D E+RLVAEGEIAGDYLEELLD
Sbjct 13 AGTTDVLAAADEPGTTEGVGTSTEGAEVSTDGAEAPVEDLEDRLVAEGEIAGDYLEELLD 72
Query 55 VLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLM 114
+LDFDGDIDLDVEG+RA+VSIDG DLNKLVGR GEVLDALQELTRLAVHQKTG RSRLM
Sbjct 73 LLDFDGDIDLDVEGDRAIVSIDGGGDLNKLVGRKGEVLDALQELTRLAVHQKTGERSRLM 132
Query 115 LDIARWRRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESE 174
LDIA+WRRRRR+ELAAL D+VARRV ETGDREEL PMTPFERKIVHDAVAAV GVHSESE
Sbjct 133 LDIAQWRRRRRDELAALGDKVARRVLETGDREELSPMTPFERKIVHDAVAAVDGVHSESE 192
Query 175 GVEPERRVVVLRD 187
GVEP RRVV+L D
Sbjct 193 GVEPSRRVVILAD 205
>gi|240168404|ref|ZP_04747063.1| hypothetical protein MkanA1_03777 [Mycobacterium kansasii ATCC
12478]
Length=192
Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 155/193 (81%), Positives = 169/193 (88%), Gaps = 7/193 (3%)
Query 1 MADADTTDFDVDAEAPGGGVRE------DTATDADEADDQEERLVAEGEIAGDYLEELLD 54
M DA+TT+ D+++++ G V + + DADE D EERLVAEGEIAGDYLEELLD
Sbjct 1 MTDAETTELDIESKSAVGDVPDVAEDVMPASVDADETD-LEERLVAEGEIAGDYLEELLD 59
Query 55 VLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLM 114
+LDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLM
Sbjct 60 LLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLM 119
Query 115 LDIARWRRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESE 174
LDIA WRRRRREELAAL + VARRVAE+G+R+EL PMTPFERKIVHDAVAAVPGVHSESE
Sbjct 120 LDIASWRRRRREELAALGERVARRVAESGERQELAPMTPFERKIVHDAVAAVPGVHSESE 179
Query 175 GVEPERRVVVLRD 187
G EP RRVVVLRD
Sbjct 180 GAEPSRRVVVLRD 192
>gi|296141903|ref|YP_003649146.1| single-stranded nucleic acid binding R3H domain-containing protein
[Tsukamurella paurometabola DSM 20162]
gi|296030037|gb|ADG80807.1| single-stranded nucleic acid binding R3H domain protein [Tsukamurella
paurometabola DSM 20162]
Length=179
Score = 219 bits (559), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/158 (74%), Positives = 129/158 (82%), Gaps = 0/158 (0%)
Query 28 ADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGR 87
AD A D+++ LV EGEIA DYLE+LLD+LDFDGDIDLDVEG RA+V+IDG DDL KLVG+
Sbjct 19 ADTAVDEDDELVEEGEIAADYLEQLLDILDFDGDIDLDVEGGRAIVAIDGGDDLTKLVGQ 78
Query 88 GGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREE 147
GEVLDALQELTRLAV Q TG RSRLMLD+A WR RR L+AL EVA RV +G++E
Sbjct 79 RGEVLDALQELTRLAVQQSTGDRSRLMLDVAGWRAGRRARLSALGAEVAARVVASGEKES 138
Query 148 LVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVVL 185
L PMTPFERKIVHDAVA V GV SESEG EP RRVVVL
Sbjct 139 LKPMTPFERKIVHDAVAKVDGVRSESEGAEPNRRVVVL 176
>gi|15828467|ref|NP_302730.1| hypothetical protein ML2709 [Mycobacterium leprae TN]
gi|221230944|ref|YP_002504360.1| hypothetical protein MLBr_02709 [Mycobacterium leprae Br4923]
gi|886321|gb|AAB53137.1| ORF193; L222-ORF12; similar to JAG protein SpoIIIJ associated
protein in Bacillus subtilis; putative [Mycobacterium leprae]
gi|13093897|emb|CAC32241.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219934051|emb|CAR72809.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=193
Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 141/193 (74%), Positives = 159/193 (83%), Gaps = 6/193 (3%)
Query 1 MADADTTDFDV---DAEAPGGGVREDTAT---DADEADDQEERLVAEGEIAGDYLEELLD 54
M D +TT+ DV D + + +D T +A++++D EERLVAEGEIAGDYLEELLD
Sbjct 1 MTDVETTECDVHQSDTQTLMEDLLDDETTADANANKSNDFEERLVAEGEIAGDYLEELLD 60
Query 55 VLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLM 114
+LDFDGDIDLDVEG RAVVSIDG DDLNKLVGR GEVLDALQELTRLAVHQKTGVRSRLM
Sbjct 61 LLDFDGDIDLDVEGTRAVVSIDGGDDLNKLVGRTGEVLDALQELTRLAVHQKTGVRSRLM 120
Query 115 LDIARWRRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESE 174
LDIA WRRRRREEL AL D +A RV TG+ E+L PMTPFERKIVHDA+AAVPGVHSESE
Sbjct 121 LDIAGWRRRRREELVALGDRMAWRVLATGECEKLTPMTPFERKIVHDAIAAVPGVHSESE 180
Query 175 GVEPERRVVVLRD 187
G+ RRV++LRD
Sbjct 181 GMGTARRVIILRD 193
>gi|326383904|ref|ZP_08205588.1| single-stranded nucleic acid binding R3H domain protein [Gordonia
neofelifaecis NRRL B-59395]
gi|326197363|gb|EGD54553.1| single-stranded nucleic acid binding R3H domain protein [Gordonia
neofelifaecis NRRL B-59395]
Length=184
Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/187 (67%), Positives = 146/187 (79%), Gaps = 3/187 (1%)
Query 1 MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG 60
M D + D D P + DT D +E D +E++LV EGEIAGDYLE+LLD+LDFDG
Sbjct 1 MTDQTVSTDDTDKVEPAEAIEPDT--DLEEID-EEDQLVEEGEIAGDYLEQLLDILDFDG 57
Query 61 DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW 120
DIDLDV+G+RA+VSIDG DL KLVGR GEVLDALQELTRLAV Q TG RSRLMLD++RW
Sbjct 58 DIDLDVDGDRAIVSIDGGKDLTKLVGRNGEVLDALQELTRLAVQQSTGDRSRLMLDVSRW 117
Query 121 RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER 180
R RR+ LA L EVA RV ++G+RE L PMTPFERKIVHDAVAAV GV+SESEG EP R
Sbjct 118 RADRRDRLARLGSEVAGRVRDSGERESLDPMTPFERKIVHDAVAAVDGVYSESEGAEPNR 177
Query 181 RVVVLRD 187
RVVV+++
Sbjct 178 RVVVIKE 184
>gi|120407003|ref|YP_956832.1| single-stranded nucleic acid binding R3H domain-containing protein
[Mycobacterium vanbaalenii PYR-1]
gi|119959821|gb|ABM16826.1| single-stranded nucleic acid binding R3H domain protein [Mycobacterium
vanbaalenii PYR-1]
Length=191
Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 136/160 (85%), Positives = 145/160 (91%), Gaps = 0/160 (0%)
Query 28 ADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGR 87
++ +D EERLVAEGEIAGDYLEELLD+LDFDGDIDLDVEG+RAVVSIDG DL KLVGR
Sbjct 32 SNSGEDLEERLVAEGEIAGDYLEELLDLLDFDGDIDLDVEGDRAVVSIDGGGDLTKLVGR 91
Query 88 GGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREE 147
GEVLDALQELTRLAVHQKTG RSRLMLDIA+WRRRRR+ELAAL D+VA RV ETG+REE
Sbjct 92 KGEVLDALQELTRLAVHQKTGERSRLMLDIAQWRRRRRDELAALGDKVAHRVLETGEREE 151
Query 148 LVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVVLRD 187
L PMTPFERKIVHDAVAAV GVHSESEGVEP RRVVVL D
Sbjct 152 LAPMTPFERKIVHDAVAAVQGVHSESEGVEPSRRVVVLVD 191
>gi|342862348|ref|ZP_08718989.1| R3H domain-containing protein [Mycobacterium colombiense CECT
3035]
gi|342130205|gb|EGT83533.1| R3H domain-containing protein [Mycobacterium colombiense CECT
3035]
Length=188
Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 156/188 (83%), Positives = 163/188 (87%), Gaps = 1/188 (0%)
Query 1 MADADTTDFDVDAEAPGGGVREDTATDADEA-DDQEERLVAEGEIAGDYLEELLDVLDFD 59
M DADTT+ DVD E ED A E DD EERLVAEGEIAGDYLEELLD+LDFD
Sbjct 1 MTDADTTERDVDTELDAQAADEDAADSGAEGIDDLEERLVAEGEIAGDYLEELLDLLDFD 60
Query 60 GDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIAR 119
GDIDLDVEG+RA+VSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIA
Sbjct 61 GDIDLDVEGSRAIVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIAS 120
Query 120 WRRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPE 179
WRRRRREELAAL D+VARRV E+G+REEL PMTPFERKIVHDAVAAV GVHSESEGVEP
Sbjct 121 WRRRRREELAALGDKVARRVLESGEREELAPMTPFERKIVHDAVAAVSGVHSESEGVEPA 180
Query 180 RRVVVLRD 187
RRVVVL D
Sbjct 181 RRVVVLHD 188
>gi|257057912|ref|YP_003135744.1| putative RNA-binding protein [Saccharomonospora viridis DSM 43017]
gi|256587784|gb|ACU98917.1| predicted RNA-binding protein [Saccharomonospora viridis DSM
43017]
Length=178
Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/172 (69%), Positives = 134/172 (78%), Gaps = 1/172 (0%)
Query 13 AEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAV 72
AE G G + TA+ ++ DD E+ LV EG+IAGDYLE LLD+LD+DGDIDLDVE RAV
Sbjct 5 AEVIGAG-GDSTASAVNDVDDNEDLLVREGDIAGDYLERLLDILDYDGDIDLDVEAGRAV 63
Query 73 VSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALA 132
VSIDG DDL+KLVG G VL+ALQELTRLAV Q+TGVRSRLMLDIA WR RRE+L L
Sbjct 64 VSIDGGDDLDKLVGPRGTVLEALQELTRLAVQQETGVRSRLMLDIAGWRAARREQLRELG 123
Query 133 DEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVV 184
A V ETG+R +L PM+PFERKIVHDAVA V GV SESEG EP+RRVVV
Sbjct 124 RSTAESVRETGERIKLQPMSPFERKIVHDAVATVDGVTSESEGEEPKRRVVV 175
>gi|333992983|ref|YP_004525597.1| hypothetical protein JDM601_4343 [Mycobacterium sp. JDM601]
gi|333488951|gb|AEF38343.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=193
Score = 208 bits (530), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 140/185 (76%), Positives = 150/185 (82%), Gaps = 0/185 (0%)
Query 3 DADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDI 62
DA+TT+ A + A A A D E+RLVAEGEIAGDYLEELLD+LDFDGDI
Sbjct 9 DAETTEHGAVETAGEPETEDGGAAPATPAVDLEDRLVAEGEIAGDYLEELLDLLDFDGDI 68
Query 63 DLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRR 122
DLDVEG RAVVSIDG DL KLVGR GEVLDALQELTRLAVHQKTG RSRLMLDIA WRR
Sbjct 69 DLDVEGRRAVVSIDGGTDLTKLVGRKGEVLDALQELTRLAVHQKTGERSRLMLDIAGWRR 128
Query 123 RRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRV 182
RRR++L AL DEVARRV E+GD EEL PM+PFERKIVHDAVAAV GVHSES+GVEP RRV
Sbjct 129 RRRDDLTALGDEVARRVLESGDDEELAPMSPFERKIVHDAVAAVAGVHSESQGVEPSRRV 188
Query 183 VVLRD 187
VV RD
Sbjct 189 VVRRD 193
>gi|343928730|ref|ZP_08768175.1| hypothetical protein GOALK_120_01580 [Gordonia alkanivorans NBRC
16433]
gi|343761479|dbj|GAA15101.1| hypothetical protein GOALK_120_01580 [Gordonia alkanivorans NBRC
16433]
Length=222
Score = 207 bits (526), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 121/149 (82%), Positives = 129/149 (87%), Gaps = 0/149 (0%)
Query 37 RLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQ 96
RLV EGEIAGDYLE+LLDVLDFDGDIDLDV+G+RAVVSIDG DDL KLVGR GEVLDALQ
Sbjct 72 RLVEEGEIAGDYLEQLLDVLDFDGDIDLDVDGDRAVVSIDGGDDLTKLVGRKGEVLDALQ 131
Query 97 ELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMTPFER 156
ELTRLAV Q TG RSRLMLDIARWR RR+ LA L EVA RV ++G+RE L PMTPFER
Sbjct 132 ELTRLAVQQATGERSRLMLDIARWRADRRDRLARLGREVAERVLKSGEREALDPMTPFER 191
Query 157 KIVHDAVAAVPGVHSESEGVEPERRVVVL 185
KIVHDAVAAV GV SESEG EP+RRVVVL
Sbjct 192 KIVHDAVAAVDGVVSESEGAEPKRRVVVL 220
>gi|41410444|ref|NP_963280.1| hypothetical protein MAP4346c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41399278|gb|AAS06896.1| hypothetical protein MAP_4346c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=195
Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 139/150 (93%), Positives = 143/150 (96%), Gaps = 0/150 (0%)
Query 38 LVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQE 97
LVAEGEIAGDYLEELLD+LDFDGDIDLDVEG+RAVVSIDGSDDLNKLVGRGGEVLDALQE
Sbjct 46 LVAEGEIAGDYLEELLDLLDFDGDIDLDVEGSRAVVSIDGSDDLNKLVGRGGEVLDALQE 105
Query 98 LTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMTPFERK 157
LTRLAVHQKTGVRSRLMLDIA WRRRRREELAAL D+VARRV E+G REEL PMTPFERK
Sbjct 106 LTRLAVHQKTGVRSRLMLDIASWRRRRREELAALGDKVARRVLESGQREELAPMTPFERK 165
Query 158 IVHDAVAAVPGVHSESEGVEPERRVVVLRD 187
IVHDAVAAVPGVHSESEGVEP RRVVVL D
Sbjct 166 IVHDAVAAVPGVHSESEGVEPSRRVVVLHD 195
>gi|108802368|ref|YP_642565.1| single-stranded nucleic acid binding R3H [Mycobacterium sp. MCS]
gi|119866061|ref|YP_936013.1| single-stranded nucleic acid binding R3H domain-containing protein
[Mycobacterium sp. KMS]
gi|126438348|ref|YP_001074039.1| single-stranded nucleic acid binding R3H domain-containing protein
[Mycobacterium sp. JLS]
gi|108772787|gb|ABG11509.1| single-stranded nucleic acid binding R3H [Mycobacterium sp. MCS]
gi|119692150|gb|ABL89223.1| single-stranded nucleic acid binding R3H domain protein [Mycobacterium
sp. KMS]
gi|126238148|gb|ABO01549.1| single-stranded nucleic acid binding R3H domain protein [Mycobacterium
sp. JLS]
Length=181
Score = 205 bits (521), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 150/187 (81%), Positives = 158/187 (85%), Gaps = 6/187 (3%)
Query 1 MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG 60
M DADTT+ D E R+ A E DD E+RLVAEGEIAGDYLEELLD+LDFDG
Sbjct 1 MTDADTTERTEDVE-----TRDAEEITAPE-DDLEDRLVAEGEIAGDYLEELLDLLDFDG 54
Query 61 DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW 120
DIDLDVEG+RAVVSIDG DLNKLVGR GEVLDALQELTRLAVHQKTG RSRLMLDIARW
Sbjct 55 DIDLDVEGDRAVVSIDGGTDLNKLVGRKGEVLDALQELTRLAVHQKTGERSRLMLDIARW 114
Query 121 RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER 180
RRRRR+ELAAL D+VARRV ETG+REEL PMTPFERKIVHDAVAAV GVHSESEGVEP R
Sbjct 115 RRRRRDELAALGDKVARRVLETGEREELAPMTPFERKIVHDAVAAVAGVHSESEGVEPSR 174
Query 181 RVVVLRD 187
RVVVL D
Sbjct 175 RVVVLAD 181
>gi|169632025|ref|YP_001705674.1| hypothetical protein MAB_4952c [Mycobacterium abscessus ATCC
19977]
gi|169243992|emb|CAM65020.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=181
Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/155 (83%), Positives = 140/155 (91%), Gaps = 0/155 (0%)
Query 33 DQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVL 92
D EERLVAEGEIAGDYLEELLD+LDFDGDIDLDVEG+RA+VSIDG DL+KLVGR GEVL
Sbjct 27 DLEERLVAEGEIAGDYLEELLDLLDFDGDIDLDVEGDRAIVSIDGGSDLSKLVGRKGEVL 86
Query 93 DALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMT 152
DALQELTRLAV QK+G RSRLMLDIA WR RRR+ELAAL ++A++V E+G+REEL PMT
Sbjct 87 DALQELTRLAVQQKSGERSRLMLDIANWRGRRRDELAALGTKIAKQVLESGEREELAPMT 146
Query 153 PFERKIVHDAVAAVPGVHSESEGVEPERRVVVLRD 187
PFERKIVHDAVAAV GVHSESEGVEP RRVVVL D
Sbjct 147 PFERKIVHDAVAAVDGVHSESEGVEPSRRVVVLHD 181
>gi|118471352|ref|YP_891134.1| R3H domain-containing protein [Mycobacterium smegmatis str. MC2
155]
gi|118172639|gb|ABK73535.1| R3H domain-containing protein [Mycobacterium smegmatis str. MC2
155]
Length=183
Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 144/185 (78%), Positives = 154/185 (84%), Gaps = 4/185 (2%)
Query 1 MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG 60
M DA TTD D + E TA DD EERLVAEGEIAGDYLEELLD+LDFDG
Sbjct 1 MTDAQTTDPGADQDDK----VETTAPAVGAEDDLEERLVAEGEIAGDYLEELLDLLDFDG 56
Query 61 DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARW 120
DIDLDVEG+RAVVSIDG +DL+KLVGR GEVLDALQELTRLAVHQKTG RSRLMLDIARW
Sbjct 57 DIDLDVEGDRAVVSIDGGNDLSKLVGRKGEVLDALQELTRLAVHQKTGERSRLMLDIARW 116
Query 121 RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER 180
RRRRR+ELAAL ++VARRV ETG REEL PMTPFERKIVHDAVAA+ GV SESEGVEP R
Sbjct 117 RRRRRDELAALGEKVARRVLETGQREELAPMTPFERKIVHDAVAAIDGVRSESEGVEPSR 176
Query 181 RVVVL 185
RVV+L
Sbjct 177 RVVIL 181
>gi|324999877|ref|ZP_08120989.1| predicted RNA-binding protein [Pseudonocardia sp. P1]
Length=163
Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/152 (68%), Positives = 119/152 (79%), Gaps = 3/152 (1%)
Query 38 LVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDD---LNKLVGRGGEVLDA 94
L+ EG++AGDYLE LLD+LDFDGDIDLDVEG RA+VSI+G+DD L KLVG G VL++
Sbjct 11 LIQEGDVAGDYLERLLDILDFDGDIDLDVEGGRAIVSIEGADDDTDLEKLVGDKGAVLES 70
Query 95 LQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMTPF 154
LQEL RLAV Q+ G RSRLMLD+A WR+RRR+EL L E AR V +G+ L PMTPF
Sbjct 71 LQELARLAVQQQLGSRSRLMLDVAGWRKRRRDELTDLGLETAREVKSSGESARLRPMTPF 130
Query 155 ERKIVHDAVAAVPGVHSESEGVEPERRVVVLR 186
ERK+VHDAVA V GV SESEG EP R+VVV R
Sbjct 131 ERKVVHDAVATVKGVVSESEGEEPRRQVVVHR 162
>gi|284993435|ref|YP_003411990.1| single-stranded nucleic acid binding R3H domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284066681|gb|ADB77619.1| single-stranded nucleic acid binding R3H domain protein [Geodermatophilus
obscurus DSM 43160]
Length=213
Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/150 (69%), Positives = 117/150 (78%), Gaps = 1/150 (0%)
Query 38 LVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQE 97
LV EG++AGDYLE LLD+LD DGDIDLDVEG+RA V+I G D L LVG G VL+ALQE
Sbjct 64 LVREGDVAGDYLERLLDILDVDGDIDLDVEGDRASVAIVGGD-LADLVGTDGAVLEALQE 122
Query 98 LTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMTPFERK 157
LTRLAV Q TGVRSRLMLDI+ +R RRR +L +LA E ARRVA +G E L M PFERK
Sbjct 123 LTRLAVAQSTGVRSRLMLDISGFRARRRADLTSLAAETARRVASSGQPERLSAMNPFERK 182
Query 158 IVHDAVAAVPGVHSESEGVEPERRVVVLRD 187
+VHD +A + GVHSESEG EP RRVVVL D
Sbjct 183 VVHDVIAGISGVHSESEGEEPNRRVVVLPD 212
>gi|262204658|ref|YP_003275866.1| single-stranded nucleic acid-binding R3H domain-containing protein
[Gordonia bronchialis DSM 43247]
gi|262088005|gb|ACY23973.1| single-stranded nucleic acid binding R3H domain protein [Gordonia
bronchialis DSM 43247]
Length=182
Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 120/152 (79%), Positives = 131/152 (87%), Gaps = 0/152 (0%)
Query 34 QEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLD 93
+E+RLV EGEIAGDYLE+LLDVLDFDGDIDLDV+G+RAVVSIDG DDL KLVGR GEVLD
Sbjct 28 EEDRLVEEGEIAGDYLEQLLDVLDFDGDIDLDVDGDRAVVSIDGGDDLTKLVGRKGEVLD 87
Query 94 ALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMTP 153
ALQELTRLAV Q TG RSRLMLDIARWR RR+ LA L EVA RV ++G++E L PMTP
Sbjct 88 ALQELTRLAVQQATGDRSRLMLDIARWRADRRDRLARLGKEVAERVLKSGEKEALDPMTP 147
Query 154 FERKIVHDAVAAVPGVHSESEGVEPERRVVVL 185
FERKIVHDAVA V GV SESEG EP+RRVVVL
Sbjct 148 FERKIVHDAVAVVDGVVSESEGAEPKRRVVVL 179
>gi|319949436|ref|ZP_08023497.1| RNA-binding protein Jag [Dietzia cinnamea P4]
gi|319436898|gb|EFV91957.1| RNA-binding protein Jag [Dietzia cinnamea P4]
Length=155
Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/152 (70%), Positives = 121/152 (80%), Gaps = 0/152 (0%)
Query 34 QEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLD 93
EERLV EGE+AGDYLE+ LD+LDFDGDIDLDVEG+RAVVSI G DDL+ LVG G VLD
Sbjct 2 SEERLVEEGEVAGDYLEQFLDILDFDGDIDLDVEGDRAVVSIVGGDDLDTLVGPDGAVLD 61
Query 94 ALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMTP 153
A+QELTRLAV Q+ G RSRLMLDIA WR +RE L A+RV E+G+ EEL PMTP
Sbjct 62 AIQELTRLAVQQELGDRSRLMLDIAGWREAKREALTDAGRVAAQRVLESGESEELEPMTP 121
Query 154 FERKIVHDAVAAVPGVHSESEGVEPERRVVVL 185
FERKI+HDA+A + GV S+S GVEP RRVVVL
Sbjct 122 FERKIIHDAIAEIDGVTSDSTGVEPNRRVVVL 153
>gi|111226213|ref|YP_717007.1| hypothetical protein FRAAL6880 [Frankia alni ACN14a]
gi|111153745|emb|CAJ65503.1| conserved hypothetical protein; putative nucleic acid binding
domain [Frankia alni ACN14a]
Length=185
Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/173 (61%), Positives = 124/173 (72%), Gaps = 5/173 (2%)
Query 17 GGGVREDTATDADEA-DDQEERLV---AEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAV 72
G GV E+ + + QE RLV EGEIA DY+E LLD++D DGD+DLDVEG RAV
Sbjct 12 GAGVSEEQGSPEEAGLSPQERRLVDLEQEGEIAADYIEGLLDIVDMDGDLDLDVEGGRAV 71
Query 73 VSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALA 132
V++ G + L+KL+G GGE L+ALQELTRLAV QKTG RSRLMLD+ R RRR EL +A
Sbjct 72 VAVVG-ERLDKLIGTGGETLEALQELTRLAVLQKTGNRSRLMLDVGGHRARRRVELRKIA 130
Query 133 DEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVVL 185
A R E G E L PMTPFERK+VHDA+A + GVHSESEG EP RRVV+L
Sbjct 131 TAAAERAIERGKPETLAPMTPFERKVVHDAIAEIDGVHSESEGEEPSRRVVIL 183
>gi|158319054|ref|YP_001511562.1| single-stranded nucleic acid binding R3H domain-containing protein
[Frankia sp. EAN1pec]
gi|158114459|gb|ABW16656.1| single-stranded nucleic acid binding R3H domain protein [Frankia
sp. EAN1pec]
Length=197
Score = 184 bits (466), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 104/170 (62%), Positives = 128/170 (76%), Gaps = 6/170 (3%)
Query 22 EDTATDADEADDQEERLVA----EGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDG 77
EDT T ++ ++ +ER +A EGEIA DY+E LLD++D DGD+DLDVEG RAVV++ G
Sbjct 30 EDT-TSSNGSNGSDERRLADLEQEGEIAADYIEGLLDIVDMDGDLDLDVEGGRAVVAVVG 88
Query 78 SDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVAR 137
D L+KL+G GGE L+ALQELTRLAV QKTGVRSRLMLD+ R RRR EL +A A
Sbjct 89 -DGLDKLIGPGGETLEALQELTRLAVLQKTGVRSRLMLDVGGHRARRRIELRKVATNAAE 147
Query 138 RVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVVLRD 187
RV +TG+ ++L MTPFERK+VHD +A + GV SESEG EP RRVVVL D
Sbjct 148 RVVDTGEPQKLAAMTPFERKVVHDVIATIDGVRSESEGEEPTRRVVVLPD 197
>gi|288916714|ref|ZP_06411089.1| single-stranded nucleic acid binding R3H domain protein [Frankia
sp. EUN1f]
gi|288351969|gb|EFC86171.1| single-stranded nucleic acid binding R3H domain protein [Frankia
sp. EUN1f]
Length=199
Score = 183 bits (465), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 97/147 (66%), Positives = 115/147 (79%), Gaps = 1/147 (0%)
Query 41 EGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTR 100
EGEIA DY+E LLD++D DGD+DLDVEG RAVV++ G D L+KL+G GGE L+ALQELTR
Sbjct 54 EGEIAADYIEGLLDIVDMDGDLDLDVEGGRAVVAVVG-DGLDKLIGTGGETLEALQELTR 112
Query 101 LAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMTPFERKIVH 160
LAV QKTGVRSRLMLD+ R RRR EL +A A +V +TG+ +L MTPFERK+VH
Sbjct 113 LAVLQKTGVRSRLMLDVGGHRARRRVELRKVATSAAHKVLDTGEPRKLAAMTPFERKVVH 172
Query 161 DAVAAVPGVHSESEGVEPERRVVVLRD 187
D +A + GVHSESEG EP RRVVVL D
Sbjct 173 DVIATIDGVHSESEGEEPSRRVVVLPD 199
>gi|302535578|ref|ZP_07287920.1| R3H domain-containing protein [Streptomyces sp. C]
gi|302444473|gb|EFL16289.1| R3H domain-containing protein [Streptomyces sp. C]
Length=170
Score = 183 bits (465), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 106/169 (63%), Positives = 124/169 (74%), Gaps = 4/169 (2%)
Query 20 VREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSI---D 76
+ E T T A E+ D RL EGEIA DYLE LLD+ D DGDID+DVE +RA VSI
Sbjct 1 MTEGTTTAAAESGDTLTRLEQEGEIAADYLEGLLDIADLDGDIDMDVEADRAAVSIVSDS 60
Query 77 GSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVA 136
G DL KLVGR GEVL+ALQELTRLAVH++TG RSRLMLDIA +R ++R ELA L + A
Sbjct 61 GGRDLQKLVGRDGEVLEALQELTRLAVHRETGDRSRLMLDIAGFRAKKRAELAELGAKAA 120
Query 137 RRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVVL 185
V +G+ +L PMTPFERK+VHDAVAA G+ SESEG EP+R VVVL
Sbjct 121 ADVKASGEPLKLAPMTPFERKVVHDAVAAA-GLKSESEGEEPQRFVVVL 168
>gi|258655507|ref|YP_003204663.1| single-stranded nucleic acid binding R3H domain-containing protein
[Nakamurella multipartita DSM 44233]
gi|258558732|gb|ACV81674.1| single-stranded nucleic acid binding R3H domain protein [Nakamurella
multipartita DSM 44233]
Length=187
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/151 (66%), Positives = 113/151 (75%), Gaps = 0/151 (0%)
Query 34 QEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLD 93
+ E LVAEG+ AGDYLE LLD+LDFDGDIDLDVEG RAVVSI G +L++LVG GEVLD
Sbjct 33 KHELLVAEGDAAGDYLERLLDILDFDGDIDLDVEGERAVVSIIGEGELSRLVGDHGEVLD 92
Query 94 ALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMTP 153
ALQELTRLA +TG RSRLMLDIA +R RRR EL L +A +V +G+ L PM P
Sbjct 93 ALQELTRLAAMAETGQRSRLMLDIAGYRARRRSELDELGRTLAEQVVASGEPVRLSPMNP 152
Query 154 FERKIVHDAVAAVPGVHSESEGVEPERRVVV 184
FERKIVHDAV + G S SEG EP RRVV+
Sbjct 153 FERKIVHDAVGRIAGAESSSEGEEPRRRVVI 183
>gi|119718913|ref|YP_925878.1| single-stranded nucleic acid binding R3H domain-containing protein
[Nocardioides sp. JS614]
gi|119539574|gb|ABL84191.1| single-stranded nucleic acid binding R3H domain protein [Nocardioides
sp. JS614]
Length=192
Score = 181 bits (458), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 100/150 (67%), Positives = 121/150 (81%), Gaps = 2/150 (1%)
Query 36 ERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDAL 95
E+L EG+IA DYLEELLD+ D DGD+D+DVEG+RA VSI G+D L +LVG GEVLDAL
Sbjct 43 EQLEQEGDIAADYLEELLDIADLDGDLDMDVEGDRAAVSIVGAD-LAQLVGARGEVLDAL 101
Query 96 QELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMTPFE 155
QELTRLAV+++TG RSRLMLDI+ +R ++R EL LA+E RV E+G+ L PM+PFE
Sbjct 102 QELTRLAVYRETGERSRLMLDISGYRAQKRAELVHLAEETVARVRESGESVALDPMSPFE 161
Query 156 RKIVHDAVAAVPGVHSESEGVEPERRVVVL 185
RK+VHDAVAA G+ SESEGVEP RRVVVL
Sbjct 162 RKVVHDAVAAA-GLTSESEGVEPRRRVVVL 190
>gi|297158786|gb|ADI08498.1| Jag-like protein [Streptomyces bingchenggensis BCW-1]
Length=169
Score = 181 bits (458), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 105/163 (65%), Positives = 119/163 (74%), Gaps = 4/163 (2%)
Query 26 TDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSI---DGSDDLN 82
T A E D RL EGEIA DYLE LLD+ D DGDID+DVE +RA VSI S DL
Sbjct 6 TPAAEGVDTLTRLEQEGEIAADYLEGLLDIADLDGDIDMDVEADRAAVSIISDSTSRDLQ 65
Query 83 KLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAET 142
KLVGR GEVL+ALQELTRLAVH++TG RSRLMLDIA +R R+R EL L + A T
Sbjct 66 KLVGRDGEVLEALQELTRLAVHRETGDRSRLMLDIAGYRARKRAELTELGTKAAEEAKGT 125
Query 143 GDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVVL 185
G+ +L PMTPFERK+VHDAVAA G+ SESEG EP+RRVVVL
Sbjct 126 GEPVKLKPMTPFERKVVHDAVAAA-GLRSESEGEEPQRRVVVL 167
>gi|337767116|emb|CCB75827.1| R3H domain-containing protein [Streptomyces cattleya NRRL 8057]
Length=169
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/159 (65%), Positives = 118/159 (75%), Gaps = 4/159 (2%)
Query 30 EADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSI---DGSDDLNKLVG 86
E +D RL EGEIA DYLE LLD+ D DGDID+DVEG+RA VSI + DL KL+G
Sbjct 10 EGEDALTRLEQEGEIAADYLEGLLDIADLDGDIDMDVEGDRAAVSIVAESSTRDLQKLIG 69
Query 87 RGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAETGDRE 146
R GEVL+ALQELTRLAVH++TG RSRLMLDI +R R+R EL L + A V TG
Sbjct 70 RDGEVLEALQELTRLAVHRETGDRSRLMLDIGGYRARKRAELTELGAKAAEEVKGTGQPV 129
Query 147 ELVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVVL 185
+L PMTPFERK+VHDAVAA G+ SESEG EP+RRVVVL
Sbjct 130 KLRPMTPFERKVVHDAVAAA-GMRSESEGEEPQRRVVVL 167
>gi|29830854|ref|NP_825488.1| Jag-like protein [Streptomyces avermitilis MA-4680]
gi|29607967|dbj|BAC72023.1| putative Jag-like protein [Streptomyces avermitilis MA-4680]
Length=170
Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/167 (62%), Positives = 122/167 (74%), Gaps = 4/167 (2%)
Query 22 EDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSI---DGS 78
E T + A E D RL EGEIA DYLE LLD+ D DGDID+DVE +RA VSI G
Sbjct 3 EGTTSAATEGGDTLTRLEQEGEIAADYLEGLLDIADLDGDIDMDVEADRAAVSIISDTGG 62
Query 79 DDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARR 138
DL KLVGR GEVL+ALQELTRLAV+++TG RSRLMLDIA +R ++REEL+ L + A
Sbjct 63 RDLQKLVGRDGEVLEALQELTRLAVNRETGDRSRLMLDIAGYRAKKREELSELGAKAAAE 122
Query 139 VAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVVL 185
V +G+ +L PMTPFERK+VHDAV A G+ SESEG EP+R VVVL
Sbjct 123 VKSSGEPVKLKPMTPFERKVVHDAVKAA-GLRSESEGEEPQRFVVVL 168
>gi|297193300|ref|ZP_06910698.1| R3H domain-containing protein [Streptomyces pristinaespiralis
ATCC 25486]
gi|197718383|gb|EDY62291.1| R3H domain-containing protein [Streptomyces pristinaespiralis
ATCC 25486]
Length=170
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/169 (63%), Positives = 122/169 (73%), Gaps = 4/169 (2%)
Query 20 VREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSI---D 76
+ E T + A E D RL EGEIA DYLE LLD+ D DGDID+DVE +RA VSI
Sbjct 1 MTEGTISAAAEGGDTLTRLEQEGEIAADYLEGLLDIADLDGDIDMDVEADRAAVSIISDT 60
Query 77 GSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVA 136
S DL KLVG+ GEVL+ALQELTRLAVH++TG RSRLMLDIA +R +R ELA L + A
Sbjct 61 ASRDLQKLVGKDGEVLEALQELTRLAVHRETGDRSRLMLDIAGFRANKRTELAELGAKAA 120
Query 137 RRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVVL 185
V TG+ +L PMTPFERK+VHDAVAA G+ SESEG EP+R VVVL
Sbjct 121 AEVKSTGEPVKLDPMTPFERKVVHDAVAAA-GLRSESEGEEPQRFVVVL 168
>gi|328883707|emb|CCA56946.1| RNA-binding protein Jag [Streptomyces venezuelae ATCC 10712]
Length=170
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/167 (63%), Positives = 121/167 (73%), Gaps = 4/167 (2%)
Query 22 EDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSI---DGS 78
E T + A E D RL EGEIA DYLE LLD+ D DGDID+DVE +RA VSI S
Sbjct 3 EGTTSAAAEGGDTLTRLEQEGEIAADYLEGLLDIADLDGDIDMDVEADRAAVSIISDSSS 62
Query 79 DDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARR 138
+L KLVGR GEVL+ALQELTRLAVH++TG RSRLMLDIA +R ++R ELA L + A
Sbjct 63 RELQKLVGRDGEVLEALQELTRLAVHRETGDRSRLMLDIAGFRAKKRAELAELGAKAAVE 122
Query 139 VAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVVL 185
V TG +L PMTPFERK+VHDA+AA G+ SESEG EP+R VVVL
Sbjct 123 VKSTGQPVKLDPMTPFERKVVHDAIAAA-GLRSESEGEEPQRFVVVL 168
>gi|297200934|ref|ZP_06918331.1| R3H domain-containing protein [Streptomyces sviceus ATCC 29083]
gi|197716894|gb|EDY60928.1| R3H domain-containing protein [Streptomyces sviceus ATCC 29083]
Length=170
Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/167 (62%), Positives = 120/167 (72%), Gaps = 4/167 (2%)
Query 22 EDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSI---DGS 78
E T + A E D RL EGEIA DYLE LLD+ D DGDID+DVE +RA VSI G
Sbjct 3 EGTTSAAAEGADTLTRLEQEGEIAADYLEGLLDIADLDGDIDMDVEADRAAVSIISDAGG 62
Query 79 DDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARR 138
DL KLVGR GEVL+ALQELTRLAVH++TG RSRLMLDI +R ++R EL+ L + A
Sbjct 63 RDLQKLVGRDGEVLEALQELTRLAVHRETGDRSRLMLDIGGYRAKKRAELSELGAKAAAE 122
Query 139 VAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVVL 185
V TG+ +L PMTPFERK+VHDA+ A G+ SESEG EP+R VVVL
Sbjct 123 VKSTGESVKLQPMTPFERKVVHDAIKAA-GLRSESEGEEPQRFVVVL 168
>gi|294630333|ref|ZP_06708893.1| R3H domain-containing protein [Streptomyces sp. e14]
gi|292833666|gb|EFF92015.1| R3H domain-containing protein [Streptomyces sp. e14]
Length=170
Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/167 (62%), Positives = 121/167 (73%), Gaps = 4/167 (2%)
Query 22 EDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSI---DGS 78
E T + A E D RL EGEIA DYLE LLD+ D DGDID+DVE +RA VSI GS
Sbjct 3 EGTTSAAAEGADALTRLEQEGEIAADYLEGLLDIADLDGDIDMDVEADRAAVSIISDTGS 62
Query 79 DDLNKLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARR 138
DL KLVGR GEVL+ALQELTRLAVH++TG RSRLMLDI +R ++R EL+ L + A
Sbjct 63 RDLQKLVGRDGEVLEALQELTRLAVHRETGDRSRLMLDIGGYRAKKRAELSELGAKAAAE 122
Query 139 VAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVVL 185
V +G+ +L PM+PFERK+VHDAV A G+ SESEG EP+R VVVL
Sbjct 123 VKASGESVKLKPMSPFERKVVHDAVKAA-GLRSESEGEEPQRFVVVL 168
>gi|302543970|ref|ZP_07296312.1| R3H domain-containing protein [Streptomyces hygroscopicus ATCC
53653]
gi|302461588|gb|EFL24681.1| R3H domain-containing protein [Streptomyces himastatinicus ATCC
53653]
Length=169
Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/163 (64%), Positives = 118/163 (73%), Gaps = 4/163 (2%)
Query 26 TDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSI---DGSDDLN 82
T A E D RL EGEIA DYLE LLD+ D DGDID+DVE +RA VSI S DL
Sbjct 6 TPAAEGVDTLTRLEQEGEIAADYLEGLLDIADLDGDIDMDVEADRAAVSIISESTSRDLQ 65
Query 83 KLVGRGGEVLDALQELTRLAVHQKTGVRSRLMLDIARWRRRRREELAALADEVARRVAET 142
KLVGR GEVL+ALQELTRLAVH++TG RSRLMLDIA +R R+R EL L + A T
Sbjct 66 KLVGRDGEVLEALQELTRLAVHRETGDRSRLMLDIAGYRARKRAELTELGAKAAEEAKGT 125
Query 143 GDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPERRVVVL 185
G+ +L MTPFERK+VHDAVAA G+HSESEG EP+R VVVL
Sbjct 126 GEPVKLKAMTPFERKVVHDAVAAA-GLHSESEGEEPQRCVVVL 167
Lambda K H
0.314 0.135 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 180588168880
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40