BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3921c
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
gi|15611057|ref|NP_218438.1| putative inner membrane protein tra... 750 0.0
gi|253800971|ref|YP_003033973.1| hypothetical protein TBMG_03969... 749 0.0
gi|121635907|ref|YP_976130.1| putative inner membrane protein tr... 748 0.0
gi|297636608|ref|ZP_06954388.1| putative inner membrane protein ... 746 0.0
gi|313660934|ref|ZP_07817814.1| putative inner membrane protein ... 744 0.0
gi|306791526|ref|ZP_07429828.1| membrane protein insertase, YidC... 741 0.0
gi|240168405|ref|ZP_04747064.1| putative inner membrane protein ... 633 1e-179
gi|342862349|ref|ZP_08718990.1| putative inner membrane protein ... 630 1e-178
gi|296167146|ref|ZP_06849553.1| membrane protein OxaA [Mycobacte... 627 7e-178
gi|254777659|ref|ZP_05219175.1| putative inner membrane protein ... 624 9e-177
gi|118620076|ref|YP_908408.1| putative inner membrane protein tr... 622 2e-176
gi|41410445|ref|NP_963281.1| putative inner membrane protein tra... 622 3e-176
gi|118466815|ref|YP_884420.1| inner membrane protein translocase... 621 7e-176
gi|183985455|ref|YP_001853746.1| transmembrane protein [Mycobact... 608 5e-172
gi|15828468|ref|NP_302731.1| inner membrane protein translocase ... 604 6e-171
gi|254818675|ref|ZP_05223676.1| putative inner membrane protein ... 603 1e-170
gi|118472161|ref|YP_891135.1| inner membrane protein translocase... 547 1e-153
gi|169632026|ref|YP_001705675.1| putative inner membrane protein... 544 1e-152
gi|120407004|ref|YP_956833.1| putative inner membrane protein tr... 543 2e-152
gi|886322|gb|AAB53138.1| ORF312; L222-ORF13; similar to C-termin... 541 9e-152
gi|145221425|ref|YP_001132103.1| putative inner membrane protein... 538 7e-151
gi|315446823|ref|YP_004079702.1| preprotein translocase subunit ... 535 4e-150
gi|126438349|ref|YP_001074040.1| putative inner membrane protein... 525 5e-147
gi|108802369|ref|YP_642566.1| putative inner membrane protein tr... 506 3e-141
gi|333992984|ref|YP_004525598.1| transmembrane protein [Mycobact... 504 1e-140
gi|54027644|ref|YP_121886.1| putative inner membrane protein tra... 442 3e-122
gi|229491230|ref|ZP_04385058.1| putative membrane protein [Rhodo... 434 1e-119
gi|226309516|ref|YP_002769478.1| OxaA family protein [Rhodococcu... 433 2e-119
gi|111020651|ref|YP_703623.1| putative inner membrane protein tr... 427 1e-117
gi|226362891|ref|YP_002780671.1| inner membrane protein transloc... 426 3e-117
gi|312142024|ref|YP_004009360.1| integral membrane protein [Rhod... 421 1e-115
gi|343928731|ref|ZP_08768176.1| putative OxaA family protein [Go... 405 4e-111
gi|333922234|ref|YP_004495815.1| putative OxaA family protein [A... 394 9e-108
gi|296141904|ref|YP_003649147.1| membrane protein insertase, Yid... 393 2e-107
gi|262204659|ref|YP_003275867.1| membrane protein insertase, Yid... 392 5e-107
gi|326383905|ref|ZP_08205589.1| putative inner membrane protein ... 379 5e-103
gi|296395443|ref|YP_003660327.1| YidC/Oxa1 familymembrane protei... 377 2e-102
gi|317509424|ref|ZP_07967042.1| YidC/Oxa1 family membrane protei... 376 3e-102
gi|312140437|ref|YP_004007773.1| integral membrane protein [Rhod... 357 2e-96
gi|226308231|ref|YP_002768191.1| OxaA family protein [Rhodococcu... 349 4e-94
gi|229488335|ref|ZP_04382201.1| putative membrane protein [Rhodo... 348 6e-94
gi|134103814|ref|YP_001109475.1| putative inner membrane protein... 332 6e-89
gi|331700391|ref|YP_004336630.1| membrane protein [Pseudonocardi... 332 6e-89
gi|319949435|ref|ZP_08023496.1| putative inner membrane protein ... 331 1e-88
gi|256381073|ref|YP_003104733.1| 60 kDa inner membrane insertion... 326 4e-87
gi|291004516|ref|ZP_06562489.1| putative inner membrane protein ... 315 1e-83
gi|324999878|ref|ZP_08120990.1| preprotein translocase subunit Y... 309 6e-82
gi|258655508|ref|YP_003204664.1| hypothetical protein Namu_5412 ... 304 2e-80
gi|257057913|ref|YP_003135745.1| preprotein translocase subunit ... 302 5e-80
gi|134097490|ref|YP_001103151.1| putative inner membrane protein... 301 8e-80
>gi|15611057|ref|NP_218438.1| putative inner membrane protein translocase component YidC [Mycobacterium
tuberculosis H37Rv]
gi|15843555|ref|NP_338592.1| putative inner membrane protein translocase component YidC [Mycobacterium
tuberculosis CDC1551]
gi|31795094|ref|NP_857587.1| putative inner membrane protein translocase component YidC [Mycobacterium
bovis AF2122/97]
69 more sequence titles
Length=366
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/366 (99%), Positives = 366/366 (100%), Gaps = 0/366 (0%)
Query 1 VSLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV 60
+SLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV
Sbjct 1 MSLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV 60
Query 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL 120
RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL
Sbjct 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL 120
Query 121 GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS 180
GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS
Sbjct 121 GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS 180
Query 181 GLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF 240
GLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF
Sbjct 181 GLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF 240
Query 241 PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG 300
PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG
Sbjct 241 PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG 300
Query 301 AKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVR 360
AKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVR
Sbjct 301 AKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVR 360
Query 361 PKKRKR 366
PKKRKR
Sbjct 361 PKKRKR 366
>gi|253800971|ref|YP_003033973.1| hypothetical protein TBMG_03969 [Mycobacterium tuberculosis KZN
1435]
gi|253322475|gb|ACT27078.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
Length=366
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/366 (99%), Positives = 366/366 (100%), Gaps = 0/366 (0%)
Query 1 VSLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV 60
+SLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV
Sbjct 1 MSLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV 60
Query 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL 120
RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL
Sbjct 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL 120
Query 121 GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS 180
GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS
Sbjct 121 GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS 180
Query 181 GLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF 240
GLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF
Sbjct 181 GLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF 240
Query 241 PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG 300
PLGVVVGGPFLPLAI+LYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG
Sbjct 241 PLGVVVGGPFLPLAIVLYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG 300
Query 301 AKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVR 360
AKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVR
Sbjct 301 AKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVR 360
Query 361 PKKRKR 366
PKKRKR
Sbjct 361 PKKRKR 366
>gi|121635907|ref|YP_976130.1| putative inner membrane protein translocase component YidC [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|121639832|ref|YP_980056.1| putative inner membrane protein translocase component YidC [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|224992327|ref|YP_002647017.1| putative inner membrane protein translocase component YidC [Mycobacterium
bovis BCG str. Tokyo 172]
gi|121491554|emb|CAL70011.1| Probable conserved transmembrane protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|121495480|emb|CAL73969.1| Probable conserved transmembrane protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224775443|dbj|BAH28249.1| putative inner membrane protein translocase component YidC [Mycobacterium
bovis BCG str. Tokyo 172]
gi|341603853|emb|CCC66535.1| probable conserved transmembrane protein [Mycobacterium bovis
BCG str. Moreau RDJ]
Length=366
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/366 (99%), Positives = 365/366 (99%), Gaps = 0/366 (0%)
Query 1 VSLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV 60
+SLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV
Sbjct 1 MSLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV 60
Query 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL 120
RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL
Sbjct 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL 120
Query 121 GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS 180
GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS
Sbjct 121 GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS 180
Query 181 GLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF 240
GLD FVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF
Sbjct 181 GLDVFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF 240
Query 241 PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG 300
PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG
Sbjct 241 PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG 300
Query 301 AKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVR 360
AKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVR
Sbjct 301 AKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVR 360
Query 361 PKKRKR 366
PKKRKR
Sbjct 361 PKKRKR 366
>gi|297636608|ref|ZP_06954388.1| putative inner membrane protein translocase component YidC [Mycobacterium
tuberculosis KZN 4207]
gi|308371552|ref|ZP_07667203.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|308336269|gb|EFP25120.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
Length=363
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/363 (99%), Positives = 363/363 (100%), Gaps = 0/363 (0%)
Query 4 LFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQI 63
+FDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQI
Sbjct 1 MFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQI 60
Query 64 RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLY 123
RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLY
Sbjct 61 RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLY 120
Query 124 HVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLD 183
HVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLD
Sbjct 121 HVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLD 180
Query 184 AFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLG 243
AFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLG
Sbjct 181 AFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLG 240
Query 244 VVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKP 303
VVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKP
Sbjct 241 VVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKP 300
Query 304 KRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVRPKK 363
KRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVRPKK
Sbjct 301 KRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVRPKK 360
Query 364 RKR 366
RKR
Sbjct 361 RKR 363
>gi|313660934|ref|ZP_07817814.1| putative inner membrane protein translocase component YidC [Mycobacterium
tuberculosis KZN V2475]
Length=363
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/363 (99%), Positives = 363/363 (100%), Gaps = 0/363 (0%)
Query 4 LFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQI 63
+FDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQI
Sbjct 1 MFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQI 60
Query 64 RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLY 123
RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLY
Sbjct 61 RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLY 120
Query 124 HVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLD 183
HVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLD
Sbjct 121 HVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLD 180
Query 184 AFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLG 243
AFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLG
Sbjct 181 AFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLG 240
Query 244 VVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKP 303
VVVGGPFLPLAI+LYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKP
Sbjct 241 VVVGGPFLPLAIVLYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKP 300
Query 304 KRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVRPKK 363
KRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVRPKK
Sbjct 301 KRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVRPKK 360
Query 364 RKR 366
RKR
Sbjct 361 RKR 363
>gi|306791526|ref|ZP_07429828.1| membrane protein insertase, YidC/Oxa1 family [Mycobacterium tuberculosis
SUMu005]
gi|308339875|gb|EFP28726.1| membrane protein insertase, YidC/Oxa1 family [Mycobacterium tuberculosis
SUMu005]
Length=394
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/363 (99%), Positives = 362/363 (99%), Gaps = 0/363 (0%)
Query 1 VSLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV 60
+SLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV
Sbjct 1 MSLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV 60
Query 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL 120
RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL
Sbjct 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL 120
Query 121 GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS 180
GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS
Sbjct 121 GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS 180
Query 181 GLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF 240
GLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF
Sbjct 181 GLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF 240
Query 241 PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG 300
PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG
Sbjct 241 PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG 300
Query 301 AKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVR 360
AKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVR
Sbjct 301 AKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVR 360
Query 361 PKK 363
PK
Sbjct 361 PKN 363
>gi|240168405|ref|ZP_04747064.1| putative inner membrane protein translocase component YidC [Mycobacterium
kansasii ATCC 12478]
Length=381
Score = 633 bits (1633), Expect = 1e-179, Method: Compositional matrix adjust.
Identities = 310/381 (82%), Positives = 331/381 (87%), Gaps = 15/381 (3%)
Query 1 VSLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV 60
+SLLFDFFSLDF+YYPVSWIMWVWY+LFA + GPSNFFAWALSVMFLVFTLRALLYKPFV
Sbjct 1 MSLLFDFFSLDFVYYPVSWIMWVWYKLFALIFGPSNFFAWALSVMFLVFTLRALLYKPFV 60
Query 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL 120
RQIRTTRQMQELQPQIKALQKKYGKDRQRMA+EMQKLQREHGFNPILGCLPMLAQIPVFL
Sbjct 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMAMEMQKLQREHGFNPILGCLPMLAQIPVFL 120
Query 121 GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS 180
GLYHVLRSFNRTTGGFGQP +SV+ENRLTGNYVF+P DVGHFLDANLFGAPIGA MTQR
Sbjct 121 GLYHVLRSFNRTTGGFGQPQMSVVENRLTGNYVFTPTDVGHFLDANLFGAPIGASMTQRG 180
Query 181 GLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF 240
GLDAFVDFSRPA+IAVGVPVMILAGIATYFNSRASIARQS EAAANPQTAMMNKLALYVF
Sbjct 181 GLDAFVDFSRPAVIAVGVPVMILAGIATYFNSRASIARQSPEAAANPQTAMMNKLALYVF 240
Query 241 PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG 300
PLGVVVGGPFLPLAIILYWFSNNIWTF QQHYVFGMIEKE+EAK+QE ++RRAANAPAPG
Sbjct 241 PLGVVVGGPFLPLAIILYWFSNNIWTFAQQHYVFGMIEKEDEAKRQEVLQRRAANAPAPG 300
Query 301 AKPKRSPKTA----------PATNAAAP-----TEAGDTDDGAESDASTERPADTSNPAR 345
AKPKR PK A P ++A A T++ D +S+ PA
Sbjct 301 AKPKRLPKAASGGGDGSVAEPVSDADAEGGVKKTDSADQSPEGKSEKEPRTPAGKPPQTG 360
Query 346 RNSGPSARTPRPGVRPKKRKR 366
RN+ P+ RTPRPG RPKKRKR
Sbjct 361 RNNAPAGRTPRPGARPKKRKR 381
>gi|342862349|ref|ZP_08718990.1| putative inner membrane protein translocase component YidC [Mycobacterium
colombiense CECT 3035]
gi|342130206|gb|EGT83534.1| putative inner membrane protein translocase component YidC [Mycobacterium
colombiense CECT 3035]
Length=365
Score = 630 bits (1624), Expect = 1e-178, Method: Compositional matrix adjust.
Identities = 303/364 (84%), Positives = 326/364 (90%), Gaps = 2/364 (0%)
Query 3 LLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQ 62
L FD FSLDF+YYPVSWIMWVWY+LFA +LGPSNFFAWALSVMFLVF+LRALLYKPFVRQ
Sbjct 4 LSFDLFSLDFVYYPVSWIMWVWYKLFASMLGPSNFFAWALSVMFLVFSLRALLYKPFVRQ 63
Query 63 IRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGL 122
IRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVF+GL
Sbjct 64 IRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFIGL 123
Query 123 YHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGL 182
YHVLRSFNRTTGGFGQPHLSV +NRLTGNYVF+P DVGHFLDANLFGAPIGA+MTQR+GL
Sbjct 124 YHVLRSFNRTTGGFGQPHLSVAQNRLTGNYVFTPTDVGHFLDANLFGAPIGAFMTQRTGL 183
Query 183 DAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPL 242
DAF FSRPA+IAVG+PVMILAG+ATYFNSRAS+ARQS EAAANPQTAMMNKLALYVFPL
Sbjct 184 DAFTFFSRPAVIAVGLPVMILAGVATYFNSRASVARQSPEAAANPQTAMMNKLALYVFPL 243
Query 243 GVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAK 302
GVVVGGPFLPLAIILYWF+NNIWTFGQQHYVFGMIEKE+EAKKQEA++RRAANAPAPGAK
Sbjct 244 GVVVGGPFLPLAIILYWFANNIWTFGQQHYVFGMIEKEDEAKKQEAIQRRAANAPAPGAK 303
Query 303 PKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVRPK 362
PKR+PK A +P D+D A + E S A + GP+ RTPRPG RPK
Sbjct 304 PKRNPKAASPGGNGSPK--ADSDTEASGSTAGESTVADSPAADTSDGPTNRTPRPGARPK 361
Query 363 KRKR 366
KRKR
Sbjct 362 KRKR 365
>gi|296167146|ref|ZP_06849553.1| membrane protein OxaA [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295897468|gb|EFG77067.1| membrane protein OxaA [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=369
Score = 627 bits (1618), Expect = 7e-178, Method: Compositional matrix adjust.
Identities = 306/369 (83%), Positives = 328/369 (89%), Gaps = 3/369 (0%)
Query 1 VSLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV 60
+ LLFDFFSLDF+YYPVSWIMW WY+LFA +LGPSNFFAWALSVMFLVF+LRALLYKPFV
Sbjct 1 MELLFDFFSLDFVYYPVSWIMWAWYKLFAAMLGPSNFFAWALSVMFLVFSLRALLYKPFV 60
Query 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL 120
RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVF+
Sbjct 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFI 120
Query 121 GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS 180
GLYHVLRSFNRTTGGFGQPHLSV +NRLTGNYVFSP DVGHFLDANLFGAPIGA+MTQR+
Sbjct 121 GLYHVLRSFNRTTGGFGQPHLSVAQNRLTGNYVFSPTDVGHFLDANLFGAPIGAFMTQRT 180
Query 181 GLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF 240
GLDAF FSRPA+IAVG PVMILAGIATYFNSRAS+ARQS EAAANPQTAMMNKLALYVF
Sbjct 181 GLDAFTYFSRPAVIAVGAPVMILAGIATYFNSRASVARQSPEAAANPQTAMMNKLALYVF 240
Query 241 PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG 300
PLGVVVGGPFLPLAIILYWF+NNIWTFGQQHYVFGMIEKE+EAKKQE ++RRAANAPAPG
Sbjct 241 PLGVVVGGPFLPLAIILYWFANNIWTFGQQHYVFGMIEKEDEAKKQEVLQRRAANAPAPG 300
Query 301 AKPKRSPKTA-PATNAAAPTEAG--DTDDGAESDASTERPADTSNPARRNSGPSARTPRP 357
AKPKR+PK P N + G DTD +TE AD + +N G + RTPRP
Sbjct 301 AKPKRNPKAGQPGGNGSPAAGEGEPDTDAPDTGTDTTEPQADKPSAGGQNGGAANRTPRP 360
Query 358 GVRPKKRKR 366
G RPK+RKR
Sbjct 361 GARPKRRKR 369
>gi|254777659|ref|ZP_05219175.1| putative inner membrane protein translocase component YidC [Mycobacterium
avium subsp. avium ATCC 25291]
Length=353
Score = 624 bits (1608), Expect = 9e-177, Method: Compositional matrix adjust.
Identities = 302/366 (83%), Positives = 325/366 (89%), Gaps = 13/366 (3%)
Query 1 VSLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV 60
+ LLFDFFSLDF+YYPVSWIMWVWY+LFA +LGPSNFFAWALSVMFLVFTLRALLYKPFV
Sbjct 1 MDLLFDFFSLDFVYYPVSWIMWVWYKLFAAMLGPSNFFAWALSVMFLVFTLRALLYKPFV 60
Query 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL 120
RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL
Sbjct 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL 120
Query 121 GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS 180
GLYHVLRSFNRTTGGFGQPHLSV++NRLTGNYVF+P DVGHFLDANLFGAPIGA+MTQR+
Sbjct 121 GLYHVLRSFNRTTGGFGQPHLSVVQNRLTGNYVFTPTDVGHFLDANLFGAPIGAFMTQRT 180
Query 181 GLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF 240
GLDAF FSRPA+IAVG+PVMILAG+ATYFNSRAS+ARQS EAAANPQTAMMNKLALYVF
Sbjct 181 GLDAFTYFSRPAVIAVGLPVMILAGVATYFNSRASVARQSPEAAANPQTAMMNKLALYVF 240
Query 241 PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG 300
PLGVVVGGPFLPLAIILYWF+NNIWTFGQQHYVFGMIEKE+EAKKQEA++RRAANAPAPG
Sbjct 241 PLGVVVGGPFLPLAIILYWFANNIWTFGQQHYVFGMIEKEDEAKKQEAIQRRAANAPAPG 300
Query 301 AKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVR 360
AKPKR+ K +G ++DA+ T A S +RTPRPG R
Sbjct 301 AKPKRNLKAG-------------AGNGVDADAAQSDAGATEGQAGGGSDAPSRTPRPGAR 347
Query 361 PKKRKR 366
PKKRKR
Sbjct 348 PKKRKR 353
>gi|118620076|ref|YP_908408.1| putative inner membrane protein translocase component YidC [Mycobacterium
ulcerans Agy99]
gi|118572186|gb|ABL06937.1| conserved transmembrane protein [Mycobacterium ulcerans Agy99]
Length=371
Score = 622 bits (1605), Expect = 2e-176, Method: Compositional matrix adjust.
Identities = 313/372 (85%), Positives = 331/372 (89%), Gaps = 7/372 (1%)
Query 1 VSLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV 60
+S LFDFFSL+F+YYPVSWIMWVWY+LFA VLGPSNFFAWALSVMFLVFTLRALLYKPFV
Sbjct 1 MSFLFDFFSLEFVYYPVSWIMWVWYKLFALVLGPSNFFAWALSVMFLVFTLRALLYKPFV 60
Query 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL 120
RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL
Sbjct 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL 120
Query 121 GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS 180
GLYHVLRSFNRTTGGFGQPHLSV+ENRLTGNYVF+P DVGHFLD NLFGAPIGA MTQR
Sbjct 121 GLYHVLRSFNRTTGGFGQPHLSVVENRLTGNYVFTPTDVGHFLDVNLFGAPIGASMTQRG 180
Query 181 GLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF 240
GLDAFVDFSRPA+IAVGVPVM+LAG+ATYFNSRAS+ARQS EAAANPQTAMMNKLALYVF
Sbjct 181 GLDAFVDFSRPAVIAVGVPVMVLAGVATYFNSRASVARQSPEAAANPQTAMMNKLALYVF 240
Query 241 PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG 300
PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVF MIEKEEEAKKQEA+ RRAANAPAPG
Sbjct 241 PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFSMIEKEEEAKKQEALERRAANAPAPG 300
Query 301 AKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPA------DTSNPARRNSGPSART 354
KPKR+PK +N +P E+ D D ++ S E D N RNS P+ RT
Sbjct 301 PKPKRTPKAVAGSN-GSPAESEDVSDTDATETSGEEAPSGDTKRDKPNSTARNSSPTNRT 359
Query 355 PRPGVRPKKRKR 366
PRPGVRPKKRKR
Sbjct 360 PRPGVRPKKRKR 371
>gi|41410445|ref|NP_963281.1| putative inner membrane protein translocase component YidC [Mycobacterium
avium subsp. paratuberculosis K-10]
gi|38503196|sp|Q9L7M1.1|OXAA_MYCPA RecName: Full=Membrane protein oxaA
gi|6969277|gb|AAF33698.1| unknown [Mycobacterium avium subsp. paratuberculosis]
gi|41399279|gb|AAS06897.1| hypothetical protein MAP_4347c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336459812|gb|EGO38726.1| membrane protein insertase, YidC/Oxa1 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length=353
Score = 622 bits (1604), Expect = 3e-176, Method: Compositional matrix adjust.
Identities = 302/366 (83%), Positives = 325/366 (89%), Gaps = 13/366 (3%)
Query 1 VSLLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFV 60
+ LLFDFFSLDF+YYPVSWIMWVWY+LFA +LGPSNFFAWALSVMFLVFTLRALLYKPFV
Sbjct 1 MDLLFDFFSLDFVYYPVSWIMWVWYKLFAAMLGPSNFFAWALSVMFLVFTLRALLYKPFV 60
Query 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL 120
RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL
Sbjct 61 RQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFL 120
Query 121 GLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRS 180
GLYHVLRSFNRTTGGFGQPHLSV++NRLTGNYVF+P DVGHFLDANLFGAPIGA+MTQR+
Sbjct 121 GLYHVLRSFNRTTGGFGQPHLSVVQNRLTGNYVFTPTDVGHFLDANLFGAPIGAFMTQRT 180
Query 181 GLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF 240
GLDAF FSRPA+IAVG+PVMILAG+ATYFNSRAS+ARQS EAAANPQTAMMNKLALYVF
Sbjct 181 GLDAFTYFSRPAVIAVGLPVMILAGVATYFNSRASVARQSPEAAANPQTAMMNKLALYVF 240
Query 241 PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG 300
PLGVVVGGPFLPLAIILYWF+NNIWTFGQQHYVFGMIEKE+EAKKQEA++RRAANAPAPG
Sbjct 241 PLGVVVGGPFLPLAIILYWFANNIWTFGQQHYVFGMIEKEDEAKKQEAIQRRAANAPAPG 300
Query 301 AKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVR 360
AKPKR+ K +G ++DA+ T A S +RTPRPG R
Sbjct 301 AKPKRNLKAG-------------AGNGVDADAAQPDAGATEGQAGGGSDAPSRTPRPGAR 347
Query 361 PKKRKR 366
PKKRKR
Sbjct 348 PKKRKR 353
>gi|118466815|ref|YP_884420.1| inner membrane protein translocase component YidC [Mycobacterium
avium 104]
gi|118168102|gb|ABK68999.1| membrane protein OxaA [Mycobacterium avium 104]
Length=350
Score = 621 bits (1601), Expect = 7e-176, Method: Compositional matrix adjust.
Identities = 300/363 (83%), Positives = 323/363 (89%), Gaps = 13/363 (3%)
Query 4 LFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQI 63
+FDFFSLDF+YYPVSWIMWVWY+LFA +LGPSNFFAWALSVMFLVFTLRALLYKPFVRQI
Sbjct 1 MFDFFSLDFVYYPVSWIMWVWYKLFAAMLGPSNFFAWALSVMFLVFTLRALLYKPFVRQI 60
Query 64 RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLY 123
RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLY
Sbjct 61 RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLY 120
Query 124 HVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLD 183
HVLRSFNRTTGGFGQPHLSV++NRLTGNYVF+P DVGHFLDANLFGAPIGA+MTQR+GLD
Sbjct 121 HVLRSFNRTTGGFGQPHLSVVQNRLTGNYVFTPTDVGHFLDANLFGAPIGAFMTQRTGLD 180
Query 184 AFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLG 243
AF FSRPA+IAVG+PVMILAG+ATYFNSRAS+ARQS EAAANPQTAMMNKLALYVFPLG
Sbjct 181 AFTYFSRPAVIAVGLPVMILAGVATYFNSRASVARQSPEAAANPQTAMMNKLALYVFPLG 240
Query 244 VVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKP 303
VVVGGPFLPLAIILYWF+NNIWTFGQQHYVFGMIEKE+EAKKQEA++RRAANAPAPGAKP
Sbjct 241 VVVGGPFLPLAIILYWFANNIWTFGQQHYVFGMIEKEDEAKKQEAIQRRAANAPAPGAKP 300
Query 304 KRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVRPKK 363
KR+ K +G ++DA+ T A S +RTPRPG RPKK
Sbjct 301 KRNLKAG-------------AGNGVDADAAQSDAGATEGQAGGGSDAPSRTPRPGARPKK 347
Query 364 RKR 366
RKR
Sbjct 348 RKR 350
>gi|183985455|ref|YP_001853746.1| transmembrane protein [Mycobacterium marinum M]
gi|183178781|gb|ACC43891.1| conserved transmembrane protein [Mycobacterium marinum M]
Length=371
Score = 608 bits (1567), Expect = 5e-172, Method: Compositional matrix adjust.
Identities = 306/360 (85%), Positives = 322/360 (90%), Gaps = 7/360 (1%)
Query 13 IYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQMQEL 72
+YYPVSWIMWVWY+LFA VLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQMQEL
Sbjct 13 VYYPVSWIMWVWYKLFALVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQMQEL 72
Query 73 QPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSFNRT 132
QPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSFNRT
Sbjct 73 QPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSFNRT 132
Query 133 TGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLDAFVDFSRPA 192
TGGFGQPHLSV+ENRLTGNYVF+P DVGHFLDANLFGAPIGA MTQR GLDAFVDFSRPA
Sbjct 133 TGGFGQPHLSVVENRLTGNYVFTPTDVGHFLDANLFGAPIGASMTQRGGLDAFVDFSRPA 192
Query 193 LIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLGVVVGGPFLP 252
+IAVGVPVM+LAG+ATYFNSRAS+ARQSAEAAANPQTAMMNKLALYVFPLGVVVGGPFLP
Sbjct 193 VIAVGVPVMVLAGVATYFNSRASVARQSAEAAANPQTAMMNKLALYVFPLGVVVGGPFLP 252
Query 253 LAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKPKRSPKTAPA 312
LAIILYWFSNNIWTFGQQHYVF MIEKEEEAKKQEA+ RRAANAPAPGAKPKR+PK
Sbjct 253 LAIILYWFSNNIWTFGQQHYVFSMIEKEEEAKKQEALERRAANAPAPGAKPKRTPKAVAG 312
Query 313 TNAAAPTEAGDTDDGAESDASTER------PADTSNPARRNSGPSARTPRPGVRPKKRKR 366
+N +P E+ D D ++ S E D N RNS P+ RTPRPG RPKKRKR
Sbjct 313 SN-GSPAESEDVSDTDATETSGEEAPSGDTKQDKPNSTARNSSPTNRTPRPGARPKKRKR 371
>gi|15828468|ref|NP_302731.1| inner membrane protein translocase component YidC [Mycobacterium
leprae TN]
gi|221230945|ref|YP_002504361.1| putative inner membrane protein translocase component YidC [Mycobacterium
leprae Br4923]
gi|38502903|sp|Q50205.2|OXAA_MYCLE RecName: Full=Membrane protein oxaA
gi|13093898|emb|CAC32242.1| putative conserved membrane protein [Mycobacterium leprae]
gi|219934052|emb|CAR72810.1| putative conserved membrane protein [Mycobacterium leprae Br4923]
Length=380
Score = 604 bits (1558), Expect = 6e-171, Method: Compositional matrix adjust.
Identities = 293/380 (78%), Positives = 326/380 (86%), Gaps = 14/380 (3%)
Query 1 VSLL-FDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPF 59
+SLL FDF SLD +YYPVSWIMWVWY+LFA VLGPSNFFAWALSVMFLVFTLRALLYKPF
Sbjct 1 MSLLPFDFVSLDIVYYPVSWIMWVWYKLFAAVLGPSNFFAWALSVMFLVFTLRALLYKPF 60
Query 60 VRQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVF 119
VRQIRTTRQMQELQP+I+ALQ+KYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVF
Sbjct 61 VRQIRTTRQMQELQPRIRALQRKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVF 120
Query 120 LGLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQR 179
LGLYH LRSFNRTTGGFGQPH+SV ENR+TGNYVF+PVDVGHFLDANL+GAPIGAYMTQR
Sbjct 121 LGLYHALRSFNRTTGGFGQPHMSVTENRMTGNYVFTPVDVGHFLDANLWGAPIGAYMTQR 180
Query 180 SGLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYV 239
SGLDAF+DFSRPA+I VG+P+M+LAG+ATYFNSRASIARQSAEAA NPQTA+MNK+ALYV
Sbjct 181 SGLDAFIDFSRPAVILVGIPMMVLAGVATYFNSRASIARQSAEAAENPQTALMNKIALYV 240
Query 240 FPLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAP 299
FP GVVVGGPFLPLAIILYWFSNNIWTFGQQHYVF MIEKE+EAKKQ+A+ RR ANAPAP
Sbjct 241 FPFGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFSMIEKEDEAKKQKAIERRTANAPAP 300
Query 300 GAKPKRSPKTAPATNAAAPTEAGDTDDGA-----ESDA--------STERPADTSNPARR 346
G+KPK TAP + + +DDGA E+D+ + PAD +
Sbjct 301 GSKPKYVSTTAPVSVNGFSKDTMISDDGAKLGSQEADSIDWVTETKTATTPADKPDCVGY 360
Query 347 NSGPSARTPRPGVRPKKRKR 366
N+ P++ T R G R K+RKR
Sbjct 361 NNNPTSHTRRSGQRTKRRKR 380
>gi|254818675|ref|ZP_05223676.1| putative inner membrane protein translocase component YidC [Mycobacterium
intracellulare ATCC 13950]
Length=362
Score = 603 bits (1556), Expect = 1e-170, Method: Compositional matrix adjust.
Identities = 302/362 (84%), Positives = 326/362 (91%), Gaps = 2/362 (0%)
Query 5 FDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIR 64
FD FSLDF+YYPVSWIMWVWY+LFA +LGPSNFFAWALSVMFLVF+LRALLYKPFVRQIR
Sbjct 3 FDVFSLDFVYYPVSWIMWVWYKLFASMLGPSNFFAWALSVMFLVFSLRALLYKPFVRQIR 62
Query 65 TTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYH 124
TTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVF+GLYH
Sbjct 63 TTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFIGLYH 122
Query 125 VLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLDA 184
VLRSFNRTTGGFGQPHLSV ENRLTGNYVF+P DV HFLDANLFGAPIGA+MTQR+GLDA
Sbjct 123 VLRSFNRTTGGFGQPHLSVAENRLTGNYVFTPTDVAHFLDANLFGAPIGAFMTQRTGLDA 182
Query 185 FVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLGV 244
F FSRPA+IAVG+PVMILAG+ATYFNSRAS+ARQS EAAANPQTAMMNKLALYVFPLGV
Sbjct 183 FTVFSRPAVIAVGLPVMILAGVATYFNSRASVARQSPEAAANPQTAMMNKLALYVFPLGV 242
Query 245 VVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKPK 304
VVGGPFLPLAIILYWF+NNIWTFGQQHYVFGMIEKE+EAKKQEA+ RRAANAPAPGAKPK
Sbjct 243 VVGGPFLPLAIILYWFANNIWTFGQQHYVFGMIEKEDEAKKQEAIARRAANAPAPGAKPK 302
Query 305 RSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVRPKKR 364
R+PK A + GDT+ ++A ++ AD P ++ PS RTPRPG RPKKR
Sbjct 303 RTPKAAAPGGNGSAKAGGDTEGSGSAEAESDD-ADGQAPEATDT-PSNRTPRPGARPKKR 360
Query 365 KR 366
KR
Sbjct 361 KR 362
>gi|118472161|ref|YP_891135.1| inner membrane protein translocase component YidC [Mycobacterium
smegmatis str. MC2 155]
gi|118173448|gb|ABK74344.1| membrane protein OxaA [Mycobacterium smegmatis str. MC2 155]
Length=367
Score = 547 bits (1410), Expect = 1e-153, Method: Compositional matrix adjust.
Identities = 277/367 (76%), Positives = 309/367 (85%), Gaps = 4/367 (1%)
Query 4 LFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQI 63
+F+FFSLD IYYPVS IMWVWY+ F+F+LGP+NFFAWALSVMFLVFTLRA+LYKPFV+QI
Sbjct 1 MFNFFSLDIIYYPVSAIMWVWYKAFSFLLGPTNFFAWALSVMFLVFTLRAILYKPFVKQI 60
Query 64 RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLY 123
RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQ+EHGFNPILGCLPMLAQ+PVFLGLY
Sbjct 61 RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQKEHGFNPILGCLPMLAQVPVFLGLY 120
Query 124 HVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLD 183
HVL SFNRT G G+ LSV ENR GNYVFS DV HFLDANLFGAP+GA M Q+ GL+
Sbjct 121 HVLMSFNRTQTGIGRLGLSVEENRSLGNYVFSATDVQHFLDANLFGAPLGATMIQQHGLE 180
Query 184 AFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLG 243
AF +F+R A+I VGVP+MILAGIAT+FNSRAS+ARQS EAAANPQTAMMNKLALYVFPLG
Sbjct 181 AFTEFNRLAVIIVGVPIMILAGIATHFNSRASVARQSVEAAANPQTAMMNKLALYVFPLG 240
Query 244 VVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKP 303
VVVGGPFLPLA+I+YW +NNIWT+GQQHYVFG IEKEEEAKK E + RRAANAPAPGAKP
Sbjct 241 VVVGGPFLPLAVIMYWLANNIWTYGQQHYVFGKIEKEEEAKKAEMLERRAANAPAPGAKP 300
Query 304 KRSPKTAPATNAAAPTEAGD-TDDGAESDASTERPADT-SNPARRNSG--PSARTPRPGV 359
R K P A A EAG T+ ES ++E D+ + A SG P+ RTP+PG
Sbjct 301 NRMKKAQPGGQAGAEGEAGSATELTGESSGTSEPTTDSGATGASGTSGTTPTNRTPKPGA 360
Query 360 RPKKRKR 366
RPKKRKR
Sbjct 361 RPKKRKR 367
>gi|169632026|ref|YP_001705675.1| putative inner membrane protein translocase component YidC [Mycobacterium
abscessus ATCC 19977]
gi|169243993|emb|CAM65021.1| Membrane protein OxaA [Mycobacterium abscessus]
Length=361
Score = 544 bits (1401), Expect = 1e-152, Method: Compositional matrix adjust.
Identities = 267/367 (73%), Positives = 301/367 (83%), Gaps = 11/367 (2%)
Query 4 LFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQI 63
+FD+F+L FIYYPVS IMWVWY+LFA++LGP NFFAWALSVMFLVFTLRA+LYKPFVRQI
Sbjct 1 MFDWFNLGFIYYPVSGIMWVWYKLFAYLLGPKNFFAWALSVMFLVFTLRAILYKPFVRQI 60
Query 64 RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLY 123
RTTRQMQELQPQIKALQKKY DRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGL+
Sbjct 61 RTTRQMQELQPQIKALQKKYKNDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLF 120
Query 124 HVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLD 183
HVLRSFNRTTGGFGQ H++V NR TGNY FS DV +FLDANLFGAP+GA M Q +GLD
Sbjct 121 HVLRSFNRTTGGFGQVHMTVEANRATGNYFFSANDVANFLDANLFGAPLGATMIQTTGLD 180
Query 184 AFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLG 243
AF +F+R A+ V +P+MI+AG+ATYFNSRASIARQS EA ANPQT +MN+LALYVFPLG
Sbjct 181 AFTEFNRLAVAGVSIPLMIIAGVATYFNSRASIARQSPEAQANPQTQIMNRLALYVFPLG 240
Query 244 VVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKP 303
VVVGGPFLP+AIILYW SNNIWTFGQQHYVF I KEEE KKQ + RRAANAP PGAKP
Sbjct 241 VVVGGPFLPIAIILYWVSNNIWTFGQQHYVFNRIAKEEEEKKQADLERRAANAPKPGAKP 300
Query 304 KRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRN----SGPSARTPRPGV 359
R K+ PA +A D+D E ST D+ PA N SG ++RTP+PG
Sbjct 301 TRG-KSQPA------EQADDSDASPEVVESTGTDEDSGGPASPNSTNGSGTTSRTPKPGA 353
Query 360 RPKKRKR 366
RP +R++
Sbjct 354 RPDRRRK 360
>gi|120407004|ref|YP_956833.1| putative inner membrane protein translocase component YidC [Mycobacterium
vanbaalenii PYR-1]
gi|119959822|gb|ABM16827.1| 60 kDa inner membrane insertion protein [Mycobacterium vanbaalenii
PYR-1]
Length=374
Score = 543 bits (1399), Expect = 2e-152, Method: Compositional matrix adjust.
Identities = 283/375 (76%), Positives = 305/375 (82%), Gaps = 16/375 (4%)
Query 5 FDFFSLDFIYYPVSWIMWVWYRLFAFVLG-------PSNFFAWALSVMFLVFTLRALLYK 57
F++FSLD IYYPVS IMWVWY+ FAF++G PSNFFAWALSVMFLVFTLRA+LYK
Sbjct 3 FNWFSLDIIYYPVSAIMWVWYKAFAFLIGLIPGVDGPSNFFAWALSVMFLVFTLRAILYK 62
Query 58 PFVRQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIP 117
PFVRQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIP
Sbjct 63 PFVRQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIP 122
Query 118 VFLGLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMT 177
VFLGLYHVL SFNRT G G+ LSV ENR NY FS DVGHFLDANLFGAP+GA M
Sbjct 123 VFLGLYHVLMSFNRTQTGIGRLGLSVEENRSLPNYFFSATDVGHFLDANLFGAPLGATMI 182
Query 178 QRSGLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLAL 237
Q+ GLDAF +F+R ++I VGVP+MI+AGIATYFNSRAS+ARQS EAAANPQTAMMNKLAL
Sbjct 183 QQHGLDAFTEFNRLSVIVVGVPIMIMAGIATYFNSRASVARQSPEAAANPQTAMMNKLAL 242
Query 238 YVFPLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAP 297
YVFPLGVVVGGPFLPLAIILYWF+NNIWTFGQQHYVFGMIEKEEE KK EA+ RRAANAP
Sbjct 243 YVFPLGVVVGGPFLPLAIILYWFANNIWTFGQQHYVFGMIEKEEEQKKLEAIERRAANAP 302
Query 298 APGAKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARR------NSGPS 351
APGAKP R K + A P+ D GAES E P++T A G S
Sbjct 303 APGAKPSRKKKAGTDSAVAGPS---DGAAGAESAGIDEAPSETPPAAESPTTSAAQGGAS 359
Query 352 ARTPRPGVRPKKRKR 366
RTPRPG RPKKRKR
Sbjct 360 NRTPRPGARPKKRKR 374
>gi|886322|gb|AAB53138.1| ORF312; L222-ORF13; similar to C-terminal 60 kda inner membrane
proteins of E. coli and Pseudomonas putida; putative [Mycobacterium
leprae]
Length=312
Score = 541 bits (1393), Expect = 9e-152, Method: Compositional matrix adjust.
Identities = 254/288 (89%), Positives = 277/288 (97%), Gaps = 1/288 (0%)
Query 1 VSLL-FDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPF 59
+SLL FDF SLD +YYPVSWIMWVWY+LFA VLGPSNFFAWALSVMFLVFTLRALLYKPF
Sbjct 1 MSLLPFDFVSLDIVYYPVSWIMWVWYKLFAAVLGPSNFFAWALSVMFLVFTLRALLYKPF 60
Query 60 VRQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVF 119
VRQIRTTRQ++ELQP+I+ALQ+KYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVF
Sbjct 61 VRQIRTTRQIEELQPRIRALQRKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVF 120
Query 120 LGLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQR 179
LGLYH LRSFNRTTGGFGQPH+SV ENR+TGNYVF+PVDVGHFLDANL+GAPIGAYMTQR
Sbjct 121 LGLYHALRSFNRTTGGFGQPHMSVTENRMTGNYVFTPVDVGHFLDANLWGAPIGAYMTQR 180
Query 180 SGLDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYV 239
SGLDAF+DFSRPA+I VG+P+M+LAG+ATYFNSRASIARQSAEAA NPQTA+MNK+ALYV
Sbjct 181 SGLDAFIDFSRPAVILVGIPMMVLAGVATYFNSRASIARQSAEAAENPQTALMNKIALYV 240
Query 240 FPLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQE 287
FP GVVVGGPFLPLAIILYWFSNNIWTFGQQHYVF MIEKE+EAK ++
Sbjct 241 FPFGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFSMIEKEDEAKNRK 288
>gi|145221425|ref|YP_001132103.1| putative inner membrane protein translocase component YidC [Mycobacterium
gilvum PYR-GCK]
gi|145213911|gb|ABP43315.1| 60 kDa inner membrane insertion protein [Mycobacterium gilvum
PYR-GCK]
Length=376
Score = 538 bits (1385), Expect = 7e-151, Method: Compositional matrix adjust.
Identities = 276/374 (74%), Positives = 306/374 (82%), Gaps = 12/374 (3%)
Query 5 FDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIR 64
F++ SLDFIYYPVS IMWVWY+ FAF+LGP+NFFAWALSVMFLVFTLRA+LYKPFV+QIR
Sbjct 3 FNWMSLDFIYYPVSAIMWVWYKAFAFLLGPTNFFAWALSVMFLVFTLRAILYKPFVKQIR 62
Query 65 TTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYH 124
TTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQ+PVFLGLYH
Sbjct 63 TTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQVPVFLGLYH 122
Query 125 VLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLDA 184
L SFNRT G G+ LSV ENR GNY FS DV HFLDANLFGAP+GA M Q+ GLDA
Sbjct 123 TLMSFNRTQTGIGRLGLSVEENRQLGNYFFSATDVQHFLDANLFGAPLGATMIQQHGLDA 182
Query 185 FVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLGV 244
F +F+R ++I VGVP+MILAGIATYFNSRAS+ARQS EAAANPQTAMMNKLALYVFPLGV
Sbjct 183 FTEFNRTSVIIVGVPIMILAGIATYFNSRASVARQSPEAAANPQTAMMNKLALYVFPLGV 242
Query 245 VVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKPK 304
VVGGPFLPLAII+YW +NNIWTFGQQHYVFG IEKEEE KK EA+ RRAANAPAPGAKP
Sbjct 243 VVGGPFLPLAIIMYWLANNIWTFGQQHYVFGKIEKEEEQKKLEAIERRAANAPAPGAKPS 302
Query 305 RSPK-TAPATNAAAPTEAGDTDDGAES----DASTERPADTSNPARRN-------SGPSA 352
R K T + + + TE D + AES AS ++ T+ RN G +
Sbjct 303 RKKKATTDSESVESTTEIEDAEPVAESASGDSASAKKTTPTAGSTPRNPNRSAAQGGTAN 362
Query 353 RTPRPGVRPKKRKR 366
RTP+PG RPKK+KR
Sbjct 363 RTPKPGARPKKKKR 376
>gi|315446823|ref|YP_004079702.1| preprotein translocase subunit YidC [Mycobacterium sp. Spyr1]
gi|315265126|gb|ADU01868.1| preprotein translocase subunit YidC [Mycobacterium sp. Spyr1]
Length=371
Score = 535 bits (1379), Expect = 4e-150, Method: Compositional matrix adjust.
Identities = 276/370 (75%), Positives = 303/370 (82%), Gaps = 12/370 (3%)
Query 9 SLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQ 68
SLDFIYYPVS IMWVWY+ FAF+LGP+NFFAWALSVMFLVFTLRA+LYKPFV+QIRTTRQ
Sbjct 2 SLDFIYYPVSAIMWVWYKAFAFLLGPTNFFAWALSVMFLVFTLRAILYKPFVKQIRTTRQ 61
Query 69 MQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRS 128
MQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQ+PVFLGLYH L S
Sbjct 62 MQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQVPVFLGLYHTLMS 121
Query 129 FNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLDAFVDF 188
FNRT G G+ LSV ENR GNY FS DV HFLDANLFGAP+GA M Q+ GLDAF +F
Sbjct 122 FNRTQTGIGRLGLSVEENRQLGNYFFSATDVQHFLDANLFGAPLGATMIQQHGLDAFTEF 181
Query 189 SRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLGVVVGG 248
+R ++I VGVP+MILAGIATYFNSRAS+ARQS EAAANPQTAMMNKLALYVFPLGVVVGG
Sbjct 182 NRTSVIIVGVPIMILAGIATYFNSRASVARQSPEAAANPQTAMMNKLALYVFPLGVVVGG 241
Query 249 PFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKPKRSPK 308
PFLPLAII+YW +NNIWTFGQQHYVFG IEKEEE KK EA+ RRAANAPAPGAKP R K
Sbjct 242 PFLPLAIIMYWLANNIWTFGQQHYVFGKIEKEEEQKKLEAIERRAANAPAPGAKPSRKKK 301
Query 309 -TAPATNAAAPTEAGDTDDGAES----DASTERPADTSNPARRNSGPSA-------RTPR 356
T + + + TE D + AES AS ++ T+ RN SA RTP+
Sbjct 302 ATTDSESVESTTEIEDAEPVAESASGDSASAKKTTPTAGSTPRNPNKSAAQGGTANRTPK 361
Query 357 PGVRPKKRKR 366
PG RPKK+KR
Sbjct 362 PGARPKKKKR 371
>gi|126438349|ref|YP_001074040.1| putative inner membrane protein translocase component YidC [Mycobacterium
sp. JLS]
gi|126238149|gb|ABO01550.1| 60 kDa inner membrane insertion protein [Mycobacterium sp. JLS]
Length=367
Score = 525 bits (1352), Expect = 5e-147, Method: Compositional matrix adjust.
Identities = 274/367 (75%), Positives = 308/367 (84%), Gaps = 4/367 (1%)
Query 4 LFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQI 63
+F++FSLD IYYPVS IMWVWY+ FAF+LGP NFFAWALSVMFLVFTLRA+LYKPFVRQI
Sbjct 1 MFNWFSLDIIYYPVSAIMWVWYKAFAFLLGPDNFFAWALSVMFLVFTLRAILYKPFVRQI 60
Query 64 RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLY 123
RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQ+EHGFNPILGCLPMLAQIPVFLGLY
Sbjct 61 RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLY 120
Query 124 HVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLD 183
HVL SFNRT G G+ LSV ENR NY+FS DVGHFLDANLFGAP+GA M Q+ GL+
Sbjct 121 HVLMSFNRTQTGIGRLGLSVEENRSLPNYLFSATDVGHFLDANLFGAPLGATMIQQHGLE 180
Query 184 AFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLG 243
AF +F+R A++ VGVP+M+LAGIAT+FNSRAS+ARQ+ EAAANPQTA+MNKLALYVFPLG
Sbjct 181 AFTEFNRVAVVVVGVPIMLLAGIATHFNSRASVARQTPEAAANPQTALMNKLALYVFPLG 240
Query 244 VVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKP 303
VVVGGPFLPLA+I+YW +NNIWT+GQQHYVFG IEKEEEAKK EA+ RRAANAPAPGAKP
Sbjct 241 VVVGGPFLPLAVIMYWLANNIWTYGQQHYVFGKIEKEEEAKKVEALERRAANAPAPGAKP 300
Query 304 KRSPKTAPATNAAAPTEAGDTDDGAESDASTERPA--DTSNPARRNSGPSA--RTPRPGV 359
KR+ K +A A G D A +D + PA + N A + SG A RTP+PG
Sbjct 301 KRTRKAQEGADAGAEAVDGSVTDAAGTDEAAGGPAAKASGNGAAKPSGGQAVSRTPKPGA 360
Query 360 RPKKRKR 366
RPKKRKR
Sbjct 361 RPKKRKR 367
>gi|108802369|ref|YP_642566.1| putative inner membrane protein translocase component YidC [Mycobacterium
sp. MCS]
gi|119866062|ref|YP_936014.1| putative inner membrane protein translocase component YidC [Mycobacterium
sp. KMS]
gi|108772788|gb|ABG11510.1| 60 kDa inner membrane insertion protein [Mycobacterium sp. MCS]
gi|119692151|gb|ABL89224.1| 60 kDa inner membrane insertion protein [Mycobacterium sp. KMS]
Length=367
Score = 506 bits (1302), Expect = 3e-141, Method: Compositional matrix adjust.
Identities = 275/367 (75%), Positives = 309/367 (85%), Gaps = 4/367 (1%)
Query 4 LFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQI 63
+F++FSLD IYYPVS IMWVWY+ FAF+LGP NFFAWALSVMFLVFTLRA+LYKPFVRQI
Sbjct 1 MFNWFSLDIIYYPVSAIMWVWYKAFAFLLGPDNFFAWALSVMFLVFTLRAILYKPFVRQI 60
Query 64 RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLY 123
RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQ+EHGFNPILGCLPMLAQIPVFLGLY
Sbjct 61 RTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLY 120
Query 124 HVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLD 183
HVL SFNRT G G+ LSV ENR NY+FS DVGHFLDANLFGAP+GA M Q+ GL+
Sbjct 121 HVLMSFNRTQTGIGRLGLSVEENRSLPNYLFSATDVGHFLDANLFGAPLGATMIQQHGLE 180
Query 184 AFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLG 243
AF +F+R A++ VGVP+M+LAGIAT+FNSRAS+ARQ+ EAAANPQTA+MNKLALYVFPLG
Sbjct 181 AFTEFNRVAVVVVGVPIMLLAGIATHFNSRASVARQTPEAAANPQTALMNKLALYVFPLG 240
Query 244 VVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKP 303
VVVGGPFLPLA+I+YW +NNIWT+GQQHYVFG IEKEEEAKK EA+ RRAANAPAPGAKP
Sbjct 241 VVVGGPFLPLAVIMYWLANNIWTYGQQHYVFGKIEKEEEAKKVEALERRAANAPAPGAKP 300
Query 304 KRSPKTAPATNAAAPTEAGDTDDGAESDASTERPAD--TSNPARRNSGPSA--RTPRPGV 359
KR+ K A +A A G D A +D + PA + N A + SG A RTP+PG
Sbjct 301 KRTRKAQEAADAGADAVDGSVTDAAGADEAAGGPAAKASGNGAAKPSGGQAVSRTPKPGA 360
Query 360 RPKKRKR 366
RPKKRKR
Sbjct 361 RPKKRKR 367
>gi|333992984|ref|YP_004525598.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333488952|gb|AEF38344.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=348
Score = 504 bits (1297), Expect = 1e-140, Method: Compositional matrix adjust.
Identities = 262/349 (76%), Positives = 295/349 (85%), Gaps = 4/349 (1%)
Query 21 MWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQMQELQPQIKALQ 80
MW+WY+ F VLGP+NFF WALSVMFLVFTLRALLYKPFV+QIRTTRQMQELQPQIKALQ
Sbjct 1 MWLWYKAFGLVLGPANFFTWALSVMFLVFTLRALLYKPFVKQIRTTRQMQELQPQIKALQ 60
Query 81 KKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSFNRTTGGFGQPH 140
KKYGKDRQ+MA+EMQKLQREHGFNPILGCLPMLAQ+PVFLGL+HVLRSFNRT+ G GQ
Sbjct 61 KKYGKDRQKMAMEMQKLQREHGFNPILGCLPMLAQLPVFLGLFHVLRSFNRTSTGIGQLG 120
Query 141 LSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLDAFVDFSRPALIAVGVPV 200
LS NR GNY FS DVG+FLDANLFGAP+GA M QR+GLDAF +F+R ++IAVGVP+
Sbjct 121 LSPDLNRQLGNYFFSTADVGNFLDANLFGAPLGATMIQRTGLDAFAEFNRVSVIAVGVPI 180
Query 201 MILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLGVVVGGPFLPLAIILYWF 260
MI AGIATYFNSRAS+ARQS EAAANPQTAMMNKLALYVFPLGVVVGGPFLPLAIILYWF
Sbjct 181 MIAAGIATYFNSRASVARQSPEAAANPQTAMMNKLALYVFPLGVVVGGPFLPLAIILYWF 240
Query 261 SNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKPKRSPKTAPATNAAAPTE 320
SNNIWTF QQHYVFG+I KE+E KK+EA+RRRAANAPAPGAKPKR+ +TA A +A
Sbjct 241 SNNIWTFAQQHYVFGLIAKEDEEKKEEALRRRAANAPAPGAKPKRAGRTAAADADSATES 300
Query 321 AGDTDDGAESDASTERPADTSNPARRNSG-PSARTPRP--GVRPKKRKR 366
T A ++A+ PA ++ +RN G P+AR RP G +PKKRKR
Sbjct 301 EQPTATDAVTEAAGGEPAK-ADAVKRNPGRPAARGSRPGAGAKPKKRKR 348
>gi|54027644|ref|YP_121886.1| putative inner membrane protein translocase component YidC [Nocardia
farcinica IFM 10152]
gi|54019152|dbj|BAD60522.1| putative membrane protein [Nocardia farcinica IFM 10152]
Length=359
Score = 442 bits (1138), Expect = 3e-122, Method: Compositional matrix adjust.
Identities = 220/362 (61%), Positives = 275/362 (76%), Gaps = 9/362 (2%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQM 69
LDFIY+PVSWI+W W+R+F F G N WAL+V+FLVFTLR +LYKPFV+Q+RTT+QM
Sbjct 2 LDFIYWPVSWILWFWHRVFGFAFGADNGLTWALAVVFLVFTLRIVLYKPFVKQVRTTKQM 61
Query 70 QELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSF 129
QELQPQIK LQKKY DRQ+MALEMQKLQ+EHGFNP++GCLP+LAQ+PVFLGL+HVLRSF
Sbjct 62 QELQPQIKELQKKYKNDRQKMALEMQKLQKEHGFNPLMGCLPVLAQVPVFLGLFHVLRSF 121
Query 130 NRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQ-RSGLDAFVDF 188
NRT GFGQ L+ +N T NYVF+ DV FL A +FGAPI A++T ++ AF D+
Sbjct 122 NRTGHGFGQLGLTPEQNANTANYVFNAADVQSFLSARIFGAPISAFITTPQAEFLAFEDY 181
Query 189 ----SRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLGV 244
SR ++ V +P+M++AG+AT+FN+RAS+ARQ+ EAAANPQ A+MNKLAL+VFPLGV
Sbjct 182 GGIPSRLSIALVAIPLMVIAGLATHFNARASVARQTPEAAANPQAALMNKLALWVFPLGV 241
Query 245 VVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKPK 304
+VGGPFLP+AI+LYW SNNIWT+GQQH VFG + KEEEAKKQ + +RA NAP PGAKP
Sbjct 242 LVGGPFLPIAILLYWVSNNIWTYGQQHLVFGRMAKEEEAKKQAKLEQRAQNAPKPGAKPV 301
Query 305 RSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVRPKKR 364
+ K PAT A+A E+ D D G ++ ST + +R SG R P G +KR
Sbjct 302 NT-KKKPATAASA--ESAD-DTGQPTEPSTNGTPKPAKAGQRKSGGQKRNPNRGRPNQKR 357
Query 365 KR 366
+R
Sbjct 358 RR 359
>gi|229491230|ref|ZP_04385058.1| putative membrane protein [Rhodococcus erythropolis SK121]
gi|229321968|gb|EEN87761.1| putative membrane protein [Rhodococcus erythropolis SK121]
Length=368
Score = 434 bits (1116), Expect = 1e-119, Method: Compositional matrix adjust.
Identities = 227/368 (62%), Positives = 270/368 (74%), Gaps = 13/368 (3%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQM 69
L+FIYYPVS I+WVW+++F F+LGP N AWALSV+FLVFTLRA+LYKPFV+Q+RTTRQM
Sbjct 2 LNFIYYPVSAILWVWHKVFGFILGPDNGIAWALSVVFLVFTLRAVLYKPFVKQVRTTRQM 61
Query 70 QELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSF 129
QELQPQIKALQKKY DRQR A+EMQKLQ+EHGFNPI+GCLP+LAQ PVF+GL+HVLRSF
Sbjct 62 QELQPQIKALQKKYSGDRQRQAVEMQKLQKEHGFNPIMGCLPVLAQAPVFIGLFHVLRSF 121
Query 130 NRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQ-RSGLDAFVDF 188
NRT G GQ +S +N T NYVFS DV FLDA LFGAPI A +T + L A+V
Sbjct 122 NRTGTGMGQLGMSAEDNLNTPNYVFSATDVQSFLDARLFGAPISAAITTPVAQLQAYVTE 181
Query 189 SRPAL------IAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPL 242
+ P L I V P+MI+A IAT+FNSRAS+ARQS AAANPQ+A+MNKLALYVFPL
Sbjct 182 NVPELPSRLNIILVAAPLMIIASIATHFNSRASVARQSEAAAANPQSAIMNKLALYVFPL 241
Query 243 GVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAK 302
GV+VGGPFLP+AI+LYW SNNIWT+GQQH VF I+ EEEAKKQEA+ RR NAP PGA+
Sbjct 242 GVLVGGPFLPIAILLYWVSNNIWTYGQQHLVFRKIDAEEEAKKQEAITRRNDNAPKPGAR 301
Query 303 PKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRP----G 358
P P + AA T DDG + S ++P + + S + RP G
Sbjct 302 P--DPSKKKGSPAALKTADSADDDGDAPEVSLKKPQPKPSGSSGGSTSKPKQNRPQSNRG 359
Query 359 VRPKKRKR 366
PK+ KR
Sbjct 360 NSPKRNKR 367
>gi|226309516|ref|YP_002769478.1| OxaA family protein [Rhodococcus erythropolis PR4]
gi|226188635|dbj|BAH36739.1| putative OxaA family protein [Rhodococcus erythropolis PR4]
Length=368
Score = 433 bits (1113), Expect = 2e-119, Method: Compositional matrix adjust.
Identities = 227/368 (62%), Positives = 270/368 (74%), Gaps = 13/368 (3%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQM 69
L+FIYYPVS I+WVW+++F F+LGP N AWALSV+FLVFTLRA+LYKPFV+Q+RTTRQM
Sbjct 2 LNFIYYPVSAILWVWHKVFGFILGPDNGIAWALSVVFLVFTLRAVLYKPFVKQVRTTRQM 61
Query 70 QELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSF 129
QELQPQIKALQKKY DRQR A+EMQKLQ+EHGFNPI+GCLP+LAQ PVF+GL+HVLRSF
Sbjct 62 QELQPQIKALQKKYSGDRQRQAVEMQKLQKEHGFNPIMGCLPVLAQAPVFIGLFHVLRSF 121
Query 130 NRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQ-RSGLDAFVDF 188
NRT G GQ +S +N T NYVFS DV FLDA LFGAPI A +T + L A+V
Sbjct 122 NRTGTGMGQLGMSAEDNLNTPNYVFSATDVQSFLDARLFGAPISAAITTPVAQLQAYVTE 181
Query 189 SRPAL------IAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPL 242
+ P L I V P+MI+A IAT+FNSRAS+ARQS AAANPQ+A+MNKLALYVFPL
Sbjct 182 NVPELPSRLNIILVAAPLMIIASIATHFNSRASVARQSEAAAANPQSAIMNKLALYVFPL 241
Query 243 GVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAK 302
GV+VGGPFLP+AI+LYW SNNIWT+GQQH VF I+ EEEAKKQEA+ RR NAP PGA+
Sbjct 242 GVLVGGPFLPIAILLYWVSNNIWTYGQQHLVFRKIDAEEEAKKQEAITRRNDNAPKPGAR 301
Query 303 PKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRP----G 358
P P + AA T DDG + S ++P + + S + RP G
Sbjct 302 P--DPGKKKGSPAALKTADSADDDGDAPEVSLKKPQPKPSGSSGGSTSKPKQNRPQSNRG 359
Query 359 VRPKKRKR 366
PK+ KR
Sbjct 360 NSPKRNKR 367
>gi|111020651|ref|YP_703623.1| putative inner membrane protein translocase component YidC [Rhodococcus
jostii RHA1]
gi|110820181|gb|ABG95465.1| probable membrane protein, OxaA family protein [Rhodococcus jostii
RHA1]
Length=370
Score = 427 bits (1098), Expect = 1e-117, Method: Compositional matrix adjust.
Identities = 221/374 (60%), Positives = 278/374 (75%), Gaps = 23/374 (6%)
Query 10 LDFIYYPVSWIMWVWYRLFAFV--LGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTR 67
LDFIYYPVS I+WVW+++F + LGP + WALSV+FLVFTLRA+LYKPFV+Q+RTTR
Sbjct 2 LDFIYYPVSGILWVWHKVFGAIPFLGPDSGITWALSVVFLVFTLRAVLYKPFVKQVRTTR 61
Query 68 QMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLR 127
QMQELQPQIKALQKKY DRQR A+EMQKLQ+EHGFNPI+GCLP+LAQ PVF+GL+HVLR
Sbjct 62 QMQELQPQIKALQKKYSGDRQRQAVEMQKLQKEHGFNPIMGCLPVLAQAPVFIGLFHVLR 121
Query 128 SFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQ-RSGLDAFV 186
SFNRT G GQ +SV N T NY FS DV FL A LFGAPI A++T ++ LDAF
Sbjct 122 SFNRTGTGIGQLGMSVEANANTPNYFFSVEDVQSFLSARLFGAPISAWITMPKAQLDAFA 181
Query 187 DFSR-PALI---AVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPL 242
+ P ++ V VP+MI+A IAT+FNSRAS+ARQS EAAANPQ+A+MNKLAL++FPL
Sbjct 182 AYGPIPTVLNIAVVAVPLMIIASIATHFNSRASVARQSPEAAANPQSAIMNKLALWIFPL 241
Query 243 GVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAK 302
GV+VGGPFLP+AI+LYW SNNIWT+GQQH VF I++EEE KKQ A+ RRA NAP PGA+
Sbjct 242 GVLVGGPFLPIAILLYWVSNNIWTYGQQHIVFRRIDQEEEEKKQAAIARRADNAPKPGAR 301
Query 303 PKRS---PKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGV 359
P + K+A AT+ ++ + + +G D+++++ + + A P+PG
Sbjct 302 PDLTKKKKKSATATDGSSSADEPEIVEGIVEDSASDQVSGDGSAA------GTSKPKPGA 355
Query 360 RPK-------KRKR 366
RP+ KRKR
Sbjct 356 RPQSNRGKSPKRKR 369
>gi|226362891|ref|YP_002780671.1| inner membrane protein translocase component YidC [Rhodococcus
opacus B4]
gi|226241378|dbj|BAH51726.1| putative OxaA family protein [Rhodococcus opacus B4]
Length=367
Score = 426 bits (1095), Expect = 3e-117, Method: Compositional matrix adjust.
Identities = 226/375 (61%), Positives = 274/375 (74%), Gaps = 28/375 (7%)
Query 10 LDFIYYPVSWIMWVWYRLFAFV--LGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTR 67
LDFIYYPVS I+WVW+++F + LGP + WALSV+FLVFTLRA+LYKPFV+Q+RTTR
Sbjct 2 LDFIYYPVSGILWVWHKVFGAIPFLGPDSGITWALSVVFLVFTLRAVLYKPFVKQVRTTR 61
Query 68 QMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLR 127
QMQELQPQIKALQKKY DRQR A+EMQKLQ+EHGFNPI+GCLP+LAQ PVF+GL+HVLR
Sbjct 62 QMQELQPQIKALQKKYSGDRQRQAVEMQKLQKEHGFNPIMGCLPVLAQAPVFIGLFHVLR 121
Query 128 SFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQ-RSGLDAFV 186
SFNRT G GQ +SV N T NY FS DV FL A LFGAPI A++T ++ LDAF
Sbjct 122 SFNRTGTGIGQLGMSVEANANTPNYFFSVEDVQSFLSARLFGAPISAWITMPKAQLDAFA 181
Query 187 DFSR-PALI---AVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPL 242
+ P ++ V VP+MI+A IAT+FNSRAS+ARQS EAAANPQ+A+MNKLAL+VFPL
Sbjct 182 AYGPIPTVLNIAVVAVPLMIIASIATHFNSRASVARQSPEAAANPQSAIMNKLALWVFPL 241
Query 243 GVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAK 302
GV+VGGPFLP+AI+LYW SNNIWT+GQQH VF I+ EEE KKQ A+ RRA NAP PGA+
Sbjct 242 GVLVGGPFLPIAILLYWVSNNIWTYGQQHIVFRRIDAEEEEKKQAAIARRADNAPKPGAR 301
Query 303 PKRS---PKTAPATNAAAPTEAGDTDDG-AESDASTERPADTSNPARRNSGPSARTPRPG 358
P + K+A AT+ ++ + +G E D S + D SA P+PG
Sbjct 302 PDLTKKKKKSATATDGSSSDNEPEIVEGVVEGDVSDQPSGDG----------SASKPKPG 351
Query 359 VRPK-------KRKR 366
RP+ KRKR
Sbjct 352 ARPQSNRGKSPKRKR 366
>gi|312142024|ref|YP_004009360.1| integral membrane protein [Rhodococcus equi 103S]
gi|325677525|ref|ZP_08157189.1| membrane protein OxaA [Rhodococcus equi ATCC 33707]
gi|311891363|emb|CBH50684.1| putative integral membrane protein [Rhodococcus equi 103S]
gi|325551772|gb|EGD21470.1| membrane protein OxaA [Rhodococcus equi ATCC 33707]
Length=363
Score = 421 bits (1082), Expect = 1e-115, Method: Compositional matrix adjust.
Identities = 223/363 (62%), Positives = 272/363 (75%), Gaps = 10/363 (2%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQM 69
LDFIYYPVSWI+WVW+++F VLGP N FAWAL+VMFLVFTLRA+LYKPFV+Q+RTTRQM
Sbjct 2 LDFIYYPVSWILWVWHKVFGAVLGPDNGFAWALAVMFLVFTLRAILYKPFVKQVRTTRQM 61
Query 70 QELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSF 129
QELQPQIKALQKKY KDRQRMALEMQKLQ+EHGFNP++GCLP+L Q PVF+GL+HVLRSF
Sbjct 62 QELQPQIKALQKKYSKDRQRMALEMQKLQKEHGFNPVMGCLPVLLQAPVFIGLFHVLRSF 121
Query 130 NRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQ-RSGLDAFVDF 188
NRT G GQ ++ +N GNY FSP DV FL A LFGAPI A +T ++ L+AF +
Sbjct 122 NRTGTGMGQLGMTPEQNAAIGNYAFSPDDVQSFLSARLFGAPISAAITTPQAQLEAFGLY 181
Query 189 -SRPALI---AVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLGV 244
+ P ++ AV +P+M++A +AT+FNSRAS+ARQSA AAANPQ+A+MNKLAL+VFPLGV
Sbjct 182 GTVPTVLNIAAVAIPLMVIASVATHFNSRASVARQSAAAAANPQSAIMNKLALWVFPLGV 241
Query 245 VVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKPK 304
+VGGPFL +AI+LYW SNNIWT+ QQH VF I+ EE AKKQ + RRA NAP PGA+PK
Sbjct 242 LVGGPFLMIAILLYWVSNNIWTYAQQHIVFRRIDAEEAAKKQAVIERRADNAPKPGARPK 301
Query 305 RSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGV-RPKK 363
K A A ++ +A D G+ D + + R P + PRP RPK
Sbjct 302 VDKKKASAQQSSPVVDAESEDAGSTDDTESSSGSGGGAAGNR---PKPK-PRPAANRPKS 357
Query 364 RKR 366
KR
Sbjct 358 NKR 360
>gi|343928731|ref|ZP_08768176.1| putative OxaA family protein [Gordonia alkanivorans NBRC 16433]
gi|343761480|dbj|GAA15102.1| putative OxaA family protein [Gordonia alkanivorans NBRC 16433]
Length=396
Score = 405 bits (1042), Expect = 4e-111, Method: Compositional matrix adjust.
Identities = 210/372 (57%), Positives = 261/372 (71%), Gaps = 26/372 (6%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLGPS---NFFAWALSVMFLVFTLRALLYKPFVRQIRTT 66
LDFIYYPVS IMWVW+ LF++V S + AWALSV+FLVFTLRA+LYKPFV+QIRTT
Sbjct 2 LDFIYYPVSGIMWVWHWLFSYVTPASPGGDGIAWALSVVFLVFTLRAILYKPFVKQIRTT 61
Query 67 RQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVL 126
++MQE+ PQ++A++KKY KDR +M EMQKLQ+EHGFNP+LGCLPML QIPVF+GL+HVL
Sbjct 62 KKMQEINPQLQAIRKKYAKDRVKMTEEMQKLQKEHGFNPMLGCLPMLLQIPVFIGLFHVL 121
Query 127 RSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSG-LDAF 185
RSFNR G GQ +S E R GNYVFS V +FLDA LFG P+ +Y+ + S AF
Sbjct 122 RSFNRMGTGMGQLGMSAAETRSQGNYVFSAEQVQNFLDARLFGVPLSSYLVEPSTEFQAF 181
Query 186 V------DFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYV 239
V DF+RP + V VP+MI+A IAT+ NSRAS+ RQ A NPQT MMN LALY+
Sbjct 182 VEPGAPIDFTRPQIAYVVVPMMIVASIATHMNSRASVQRQPEAALENPQTRMMNNLALYI 241
Query 240 FPLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAP 299
FP+G++V GPF P+AI+LYW SNNIWT+GQQH VFG I KEEE K + ANAP P
Sbjct 242 FPIGILVTGPFFPVAILLYWMSNNIWTYGQQHLVFGKIAKEEEEAKLLKQEKLKANAPKP 301
Query 300 GAKPKRSPKTAPA--------TNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPS 351
G +P R K A T A + T+AG TDD +DA++ D+S +SGP
Sbjct 302 GVRPDRQKKRNAAADESGNSETTAVSMTKAGATDD---ADATS----DSSPSGATDSGPG 354
Query 352 ARTPRPGVRPKK 363
A+ P+PG +P +
Sbjct 355 AK-PKPGQKPTR 365
>gi|333922234|ref|YP_004495815.1| putative OxaA family protein [Amycolicicoccus subflavus DQS3-9A1]
gi|333484455|gb|AEF43015.1| Putative OxaA family protein [Amycolicicoccus subflavus DQS3-9A1]
Length=366
Score = 394 bits (1013), Expect = 9e-108, Method: Compositional matrix adjust.
Identities = 207/370 (56%), Positives = 251/370 (68%), Gaps = 32/370 (8%)
Query 10 LDFIYYPVSWIMWVWYRLFAFV--LGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTR 67
L+FIYYPVS I+W W+++F F+ LGP N WALSV+FLVFT+RALLYKPFV+Q+RTTR
Sbjct 2 LNFIYYPVSGILWFWHKVFGFIPGLGPDNGITWALSVIFLVFTIRALLYKPFVKQVRTTR 61
Query 68 QMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLR 127
+MQELQPQIKAL+KKYGKDRQRMALEMQKLQ+EHGFNP+LGCLPMLAQ+PVF+GLYHVL
Sbjct 62 KMQELQPQIKALRKKYGKDRQRMALEMQKLQKEHGFNPLLGCLPMLAQVPVFIGLYHVLM 121
Query 128 SFNRTTG-GFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLDAFV 186
SFNRT G G G+ HL N GNYVFS DV FLDA L G+P+ A + G D F
Sbjct 122 SFNRTGGYGPGRLHLDPELNANLGNYVFSVDDVRSFLDARLLGSPLSAAIAH--GDDVFS 179
Query 187 DFSRPAL-------IAVG---VPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLA 236
F AL +A+G VP+MI+A I T+ N++ S++RQSA A PQTA+MN+LA
Sbjct 180 AFDASALSSAPPSRVAIGFIAVPLMIIASIMTHLNAKHSVSRQSAAVADQPQTAIMNRLA 239
Query 237 LYVFPLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANA 296
LYVFPLGV+VGGPFLP+AI+LYW +NN WT+ QQ V+ I+ EEE K+ + + RR + A
Sbjct 240 LYVFPLGVLVGGPFLPVAILLYWVANNSWTYLQQKIVYKSIDAEEEQKRLDVIERRDSYA 299
Query 297 PAPGAKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPR 356
P PGAKP KTA A D P D S A + R P+
Sbjct 300 PKPGAKPTSGKKTA-----------------ASQDDDVVDPEDASGDADPSPTADRRKPQ 342
Query 357 PGVRPKKRKR 366
G RP R
Sbjct 343 AGARPSTPNR 352
>gi|296141904|ref|YP_003649147.1| membrane protein insertase, YidC/Oxa1 family [Tsukamurella paurometabola
DSM 20162]
gi|296030038|gb|ADG80808.1| membrane protein insertase, YidC/Oxa1 family [Tsukamurella paurometabola
DSM 20162]
Length=390
Score = 393 bits (1010), Expect = 2e-107, Method: Compositional matrix adjust.
Identities = 189/320 (60%), Positives = 245/320 (77%), Gaps = 18/320 (5%)
Query 4 LFDFFSLDFIYYPVSWIMWVWYRLFAFV--LGPSNFFAWALSVMFLVFTLRALLYKPFVR 61
+F+ SLD++YYPVS IMWVW++LF+ + LGP + WALSV+FLV TLRA+LYKPFVR
Sbjct 1 MFNPLSLDYVYYPVSGIMWVWHKLFSLIPGLGPDSGVTWALSVIFLVLTLRAILYKPFVR 60
Query 62 QIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLG 121
QIRTTRQMQE QPQ++AL+KKYGKDRQ++ALEMQKLQ+EHGFNP+LGCLP L Q+PVF+G
Sbjct 61 QIRTTRQMQEFQPQMQALRKKYGKDRQKLALEMQKLQKEHGFNPLLGCLPALLQVPVFIG 120
Query 122 LYHVLRSFNRTTGG----FGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMT 177
L+HVLRSFNR GG FG P ++ E R T NY FS DV FLDA LFG P+ +Y+
Sbjct 121 LFHVLRSFNRMAGGATQMFGSPDMTAYETRHTANYFFSATDVQSFLDARLFGVPLSSYVQ 180
Query 178 Q-RSGLDAFV-----------DFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAA 225
+ + AF+ +F + ++A+ VP+MI+A +AT+FN+RASIARQ +
Sbjct 181 EPVAQFQAFMPVNINNDYIAPNFEKWQILALSVPLMIVAALATHFNARASIARQPVASLD 240
Query 226 NPQTAMMNKLALYVFPLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKK 285
NPQTA+MN+L L+VFP+GV+VGG FLP+AI++YW + NIWT+ QQH VFG ++KE+E KK
Sbjct 241 NPQTAIMNRLMLWVFPIGVLVGGFFLPVAILIYWVTQNIWTYCQQHIVFGKLDKEDEEKK 300
Query 286 QEAVRRRAANAPAPGAKPKR 305
+ A +RA NAP PGAKPK+
Sbjct 301 RLAQEKRAENAPKPGAKPKK 320
>gi|262204659|ref|YP_003275867.1| membrane protein insertase, YidC/Oxa1 family [Gordonia bronchialis
DSM 43247]
gi|262088006|gb|ACY23974.1| membrane protein insertase, YidC/Oxa1 family [Gordonia bronchialis
DSM 43247]
Length=411
Score = 392 bits (1007), Expect = 5e-107, Method: Compositional matrix adjust.
Identities = 205/378 (55%), Positives = 257/378 (68%), Gaps = 22/378 (5%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLGPS---NFFAWALSVMFLVFTLRALLYKPFVRQIRTT 66
L+FIYYPVS IMWVW+ LF +L S + AWALSV+FLVFTLRA+LYKPFV+QIRTT
Sbjct 2 LNFIYYPVSGIMWVWHWLFDHILPNSPGGDGVAWALSVVFLVFTLRAILYKPFVKQIRTT 61
Query 67 RQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVL 126
++MQE+ P+++A++KKY KDR +M EMQKLQ+EHGFNP+LGCLPML QIPVF+GL+HVL
Sbjct 62 KKMQEINPELQAIRKKYAKDRVKMTEEMQKLQKEHGFNPLLGCLPMLLQIPVFIGLFHVL 121
Query 127 RSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQ-RSGLDAF 185
RSFNRT G GQ +S E R T NY FS V +FLDA LFG P+ +++TQ + AF
Sbjct 122 RSFNRTATGMGQLGMSPTETRNTPNYFFSVDQVQNFLDARLFGVPLSSFITQPVTEWQAF 181
Query 186 V------DFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYV 239
V DF+R + V VP+MI+A IAT+ NSRAS+ARQ A NPQT MMN LALY+
Sbjct 182 VNPGEPIDFTRVQIAIVVVPMMIIASIATHMNSRASVARQPEAALENPQTRMMNMLALYI 241
Query 240 FPLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAP 299
FPLG++V GPF P+AI+LYW SNNIWT+GQQH VFG I KEEE K + ANAP P
Sbjct 242 FPLGILVTGPFFPVAILLYWMSNNIWTYGQQHLVFGRIAKEEEEAKLAKQEKLKANAPKP 301
Query 300 GAKPKR-SPKTAPATNAAAPTEAGD-TDDGAESDASTERPADTSNPARRNSGPS------ 351
G +P R K++PA AA E + D +SD + + D + SG +
Sbjct 302 GVRPDRLKKKSSPAVAAAGDGETTEVVDTTGDSDETGKVVMDKAGSGTSGSGKTGVDSPS 361
Query 352 ----ARTPRPGVRPKKRK 365
TP+PG +P + K
Sbjct 362 EPEIGSTPKPGQKPTRPK 379
>gi|326383905|ref|ZP_08205589.1| putative inner membrane protein translocase component YidC [Gordonia
neofelifaecis NRRL B-59395]
gi|326197364|gb|EGD54554.1| putative inner membrane protein translocase component YidC [Gordonia
neofelifaecis NRRL B-59395]
Length=384
Score = 379 bits (972), Expect = 5e-103, Method: Compositional matrix adjust.
Identities = 199/366 (55%), Positives = 247/366 (68%), Gaps = 19/366 (5%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLGPS---NFFAWALSVMFLVFTLRALLYKPFVRQIRTT 66
L+FIYYPVSWIMWVW+ LF V+ S + AWALSV+FLVFTLRA+LYKPFV+QIRTT
Sbjct 2 LNFIYYPVSWIMWVWHWLFDSVMPNSPGWDGIAWALSVVFLVFTLRAILYKPFVKQIRTT 61
Query 67 RQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVL 126
+QMQE+ PQ++A++KKY DR +M EMQKLQ+EHGFNP+LGCLPM QIPVF+GL+HVL
Sbjct 62 KQMQEINPQMQAIRKKYANDRVKMTEEMQKLQKEHGFNPLLGCLPMFMQIPVFIGLFHVL 121
Query 127 RSFNRTTGGFGQP-------HLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQ- 178
RSFNR G P ++ + R T NY FS V +FLDA LFG P+ +Y+T+
Sbjct 122 RSFNRMGAGTSMPIGGSSSGGMTAEQTRETANYAFSADQVQNFLDARLFGVPLSSYITEP 181
Query 179 RSGLDAFV------DFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMM 232
AFV DF+R + AV +P+MI+A IAT+ NSRAS+ARQSAEA NPQT +M
Sbjct 182 VEQFKAFVEPGQPIDFTRWQIAAVVIPLMIVASIATHMNSRASVARQSAEAMDNPQTRIM 241
Query 233 NKLALYVFPLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRR 292
NKLALYVFPLG++V GPF P+AI+LYW SNN+WT+GQQH VFG I +EEE K R
Sbjct 242 NKLALYVFPLGILVTGPFFPVAILLYWVSNNLWTYGQQHLVFGRIAREEEEAKLAKEERL 301
Query 293 AANAPAPGAKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSA 352
A AP PGA+P ++ + T A E D DG AS + S P P
Sbjct 302 KAAAPKPGARPDKTKRE--TTVAVVDGEVEDDSDGDAPKASGGKGQSASKPVSNKPSPGQ 359
Query 353 RTPRPG 358
+ +PG
Sbjct 360 KPSKPG 365
>gi|296395443|ref|YP_003660327.1| YidC/Oxa1 familymembrane protein insertase [Segniliparus rotundus
DSM 44985]
gi|296182590|gb|ADG99496.1| membrane protein insertase, YidC/Oxa1 family [Segniliparus rotundus
DSM 44985]
Length=320
Score = 377 bits (968), Expect = 2e-102, Method: Compositional matrix adjust.
Identities = 185/314 (59%), Positives = 235/314 (75%), Gaps = 9/314 (2%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQM 69
LDF+YYPVS ++WVW+ +F+ VLGP + FAWALSV+ LV T+RALLY P VRQIR R+M
Sbjct 2 LDFVYYPVSGVLWVWHWVFSQVLGPKSGFAWALSVVALVCTIRALLYAPAVRQIRFMRKM 61
Query 70 QELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSF 129
QELQPQ+KA+Q KYGKDRQR ALEMQKLQ+EHGFNP+LGCLPML QIPVF+GLYHVL SF
Sbjct 62 QELQPQMKAIQAKYGKDRQRQALEMQKLQQEHGFNPLLGCLPMLLQIPVFIGLYHVLSSF 121
Query 130 NRTTGGF--GQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQ-RSGLDAF- 185
NRT G F G L+ +NR T NYVFSP DV FL++ FG P+ +Y+ + + DAF
Sbjct 122 NRTAGAFFSGGGSLTPEQNRNTSNYVFSPADVQSFLESRFFGVPLSSYILEPAASFDAFI 181
Query 186 -----VDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF 240
V+F R + V VP+MI+A +AT+ NSRAS++RQ A+ A PQ AMM ++L+VF
Sbjct 182 RAGSAVEFQRWQIALVAVPLMIIASVATHMNSRASLSRQPADVAEQPQAAMMRVMSLWVF 241
Query 241 PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG 300
PLGV++ G P+A++LYW SNN WT+GQQH VF I++E+E KK +A++RRAANAP PG
Sbjct 242 PLGVLIFGWASPIALLLYWVSNNAWTYGQQHLVFRKIDQEDEEKKLQAIQRRAANAPKPG 301
Query 301 AKPKRSPKTAPATN 314
KP R A++
Sbjct 302 VKPVRKKSQTQASS 315
>gi|317509424|ref|ZP_07967042.1| YidC/Oxa1 family membrane protein insertase [Segniliparus rugosus
ATCC BAA-974]
gi|316252253|gb|EFV11705.1| YidC/Oxa1 family membrane protein insertase [Segniliparus rugosus
ATCC BAA-974]
Length=320
Score = 376 bits (965), Expect = 3e-102, Method: Compositional matrix adjust.
Identities = 181/314 (58%), Positives = 236/314 (76%), Gaps = 9/314 (2%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQM 69
LDF+YYPVS ++W+W+ +F+ +LGP + F WALSV+ LV TLRALLY P +RQIR R+M
Sbjct 2 LDFVYYPVSGVLWLWHWVFSQILGPESGFGWALSVVALVCTLRALLYAPAIRQIRFMRKM 61
Query 70 QELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSF 129
QE+QPQ+KA+Q KY KDRQR ALEMQKLQ+EHGFNP+LGCLPML QIPVF+GLYHVL SF
Sbjct 62 QEIQPQMKAIQTKYAKDRQRQALEMQKLQKEHGFNPLLGCLPMLLQIPVFIGLYHVLSSF 121
Query 130 NRTTGGF--GQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQ-RSGLDAF- 185
NRT G F G ++ +NR T NYVFSP DV FL++ FG P+ +Y+T+ + +AF
Sbjct 122 NRTAGAFFSGGGSMTPEQNRNTKNYVFSPHDVQSFLESRFFGVPLSSYITEPAASFNAFI 181
Query 186 -----VDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVF 240
VDF R + AV +P+M++A +AT+ NSRAS++RQ A+ + PQ AMM ++L+VF
Sbjct 182 KAGSAVDFQRWQIAAVAIPLMLIASVATHMNSRASLSRQPADVSEQPQAAMMRVMSLWVF 241
Query 241 PLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPG 300
PLGV++ G P+A++LYW SNN WT+GQQH VF I++E+E KK++AV RRAANAP PG
Sbjct 242 PLGVLIFGWASPIALLLYWVSNNAWTYGQQHLVFRKIDREDEEKKRQAVERRAANAPKPG 301
Query 301 AKPKRSPKTAPATN 314
AKP R PA +
Sbjct 302 AKPVRKKAENPAAH 315
>gi|312140437|ref|YP_004007773.1| integral membrane protein [Rhodococcus equi 103S]
gi|325675949|ref|ZP_08155632.1| membrane protein OxaA [Rhodococcus equi ATCC 33707]
gi|311889776|emb|CBH49093.1| putative integral membrane protein [Rhodococcus equi 103S]
gi|325553187|gb|EGD22866.1| membrane protein OxaA [Rhodococcus equi ATCC 33707]
Length=293
Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 176/288 (62%), Positives = 219/288 (77%), Gaps = 5/288 (1%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQM 69
LDF+YYPVS I+W W++ F LGP N FAWAL+VMFLVFTLR LL P +RQIRT QM
Sbjct 2 LDFVYYPVSAILWFWHKAFGAALGPDNGFAWALAVMFLVFTLRLLLLGPAIRQIRTGLQM 61
Query 70 QELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSF 129
+ELQPQIKALQKKY DRQRMALEMQKLQ+EHGFNP++GCLPML Q PVF+GLYHVLRSF
Sbjct 62 RELQPQIKALQKKYAGDRQRMALEMQKLQQEHGFNPLMGCLPMLVQAPVFIGLYHVLRSF 121
Query 130 NRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQ-RSGLDAFVDF 188
NRT G G ++ +N T NY+FSP DV FL A LFGAPI +T +S L++F
Sbjct 122 NRTGTGHGGLGMTAQDNANTANYIFSPADVQSFLSARLFGAPISTAITSPQSTLESFAAH 181
Query 189 ----SRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLGV 244
+ + AV +P+M++A +AT+FN+RAS+ARQ +A+ANPQTA+MNKL L+VFPLGV
Sbjct 182 GGVPTVATIAAVAIPLMVIASLATHFNARASVARQEPDASANPQTAIMNKLMLWVFPLGV 241
Query 245 VVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRR 292
+VGGPFL +AI+LYW SNNIWT+ QQH VF +++E K++ + R
Sbjct 242 LVGGPFLMIAILLYWVSNNIWTYAQQHLVFARLDRETAVKQRALAQER 289
>gi|226308231|ref|YP_002768191.1| OxaA family protein [Rhodococcus erythropolis PR4]
gi|226187348|dbj|BAH35452.1| putative OxaA family protein [Rhodococcus erythropolis PR4]
Length=318
Score = 349 bits (896), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 179/315 (57%), Positives = 223/315 (71%), Gaps = 16/315 (5%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLG-PSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQ 68
LDF+YYPVS I+W W+++F+ + G P N WALSV+FLVFTL+ALL+KPFV+Q+RT
Sbjct 2 LDFVYYPVSGILWFWHKVFSLISGSPDNGVVWALSVVFLVFTLKALLFKPFVKQVRTQLV 61
Query 69 MQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRS 128
MQ+LQPQIKALQKKY DRQ++ +EM KLQ+EH ++P+LGCLPML Q PVF+GLYHVLRS
Sbjct 62 MQKLQPQIKALQKKYSGDRQKLTVEMAKLQKEHNYSPLLGCLPMLVQAPVFIGLYHVLRS 121
Query 129 FNRTTGGFGQPHL------SVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSG- 181
FNRT P L SV +N T NY FS DV FLDA LFGAP+ A ++ +
Sbjct 122 FNRTGAASHVPFLSPTEPMSVADNANTANYFFSASDVQSFLDAKLFGAPLSAMISSPAAQ 181
Query 182 LDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFP 241
L+AF D SR ++I V VP+MI A +AT+F SRASIARQ NPQTA+MNKLAL+VFP
Sbjct 182 LEAFGDVSRISIILVAVPLMIFAAVATHFTSRASIARQVDTGTVNPQTAIMNKLALWVFP 241
Query 242 LGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMI---EKEEEAKKQEAVR-----RRA 293
+GV+ G F P+AI+LY+ SNN WT GQQH V+G I +KE E+ V R A
Sbjct 242 VGVIAFGAFAPVAILLYFVSNNCWTLGQQHLVYGRIAAEQKEAESSPTPGVTAPPSPRVA 301
Query 294 ANAPAPGAKPKRSPK 308
A P PGAKP R+ +
Sbjct 302 AAPPLPGAKPIRAKR 316
>gi|229488335|ref|ZP_04382201.1| putative membrane protein [Rhodococcus erythropolis SK121]
gi|229323839|gb|EEN89594.1| putative membrane protein [Rhodococcus erythropolis SK121]
Length=317
Score = 348 bits (894), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 178/314 (57%), Positives = 223/314 (72%), Gaps = 15/314 (4%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLG-PSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQ 68
LDF+YYPVS I+W W+++F+ V G P N WALSV+FLVFTL+ALL+KPFV+Q+RT
Sbjct 2 LDFVYYPVSGILWFWHKVFSLVSGSPDNGVVWALSVVFLVFTLKALLFKPFVKQVRTQLV 61
Query 69 MQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRS 128
MQ+LQPQIKALQKKY DRQ++ +EM KLQ+EH ++P+LGCLPML Q PVF+GLYHVLRS
Sbjct 62 MQKLQPQIKALQKKYSGDRQKLTVEMAKLQKEHNYSPLLGCLPMLVQAPVFIGLYHVLRS 121
Query 129 FNRTTGGFGQPHL------SVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSG- 181
FNRT P L SV +N T NY FS DV FLDA LFGAP+ A ++ +
Sbjct 122 FNRTGAASHVPFLSPTEPMSVADNANTANYFFSASDVQSFLDAKLFGAPLSAMISSPAAQ 181
Query 182 LDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFP 241
L+AF D SR ++I V VP+MI A +AT+F SRASIARQ NPQTA+MNKLAL+VFP
Sbjct 182 LEAFGDVSRISIILVAVPLMIFAAVATHFTSRASIARQVDTGTVNPQTAIMNKLALWVFP 241
Query 242 LGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMI---EKEEEAKKQEAVRR----RAA 294
+GV+ G F P+AI+LY+ SNN WT GQQH+V+G I +KE E+ + R A
Sbjct 242 VGVIAFGAFAPVAILLYFVSNNCWTLGQQHFVYGRIAAEQKEAESSPTPGMTAPPSPRVA 301
Query 295 NAPAPGAKPKRSPK 308
P PGAKP R+ +
Sbjct 302 APPLPGAKPIRAKR 315
>gi|134103814|ref|YP_001109475.1| putative inner membrane protein translocase component YidC [Saccharopolyspora
erythraea NRRL 2338]
gi|291005728|ref|ZP_06563701.1| putative inner membrane protein translocase component YidC [Saccharopolyspora
erythraea NRRL 2338]
gi|133916437|emb|CAM06550.1| preprotein translocase YidC subunit [Saccharopolyspora erythraea
NRRL 2338]
Length=336
Score = 332 bits (851), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 170/346 (50%), Positives = 220/346 (64%), Gaps = 20/346 (5%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQM 69
LDFIYYPVS I+W W+ +F FVL P++ FAWALSV+FLVFTLRALL+KPFV Q+R+ ++M
Sbjct 2 LDFIYYPVSAILWFWHEVFGFVLDPASGFAWALSVVFLVFTLRALLFKPFVHQVRSMKKM 61
Query 70 QELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSF 129
QE P IKALQ+KYG DRQ+MA EMQKLQ EHGFNP+ GCLPML Q+PVF+GL+HVL F
Sbjct 62 QEFAPHIKALQEKYGDDRQKMAQEMQKLQAEHGFNPVSGCLPMLVQVPVFIGLFHVLNGF 121
Query 130 NRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLDAFVDFS 189
G P NYVF DV F++A+LFGA + ++Q + A
Sbjct 122 RP-----GAP----------SNYVFGAEDVASFVEADLFGAKLSNTISQAPEMLAHFQTD 166
Query 190 RPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLGVVVGGP 249
R +++ VGVP+MI A IAT+F +R + RQ+AEAA NPQTA+MN++ L++FP+ ++GGP
Sbjct 167 RTSMLLVGVPLMIAAAIATHFTARHGVQRQTAEAAQNPQTAVMNRMTLWLFPMFAIIGGP 226
Query 250 FLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQE--AVRRRAANAPAPGAKPKRSP 307
FLPLAI++YW +NN WT GQQ V+ I++EE K V A A K P
Sbjct 227 FLPLAILIYWLANNFWTLGQQRVVYRRIDREEAEKAGTPAVVDSTAVAASGSTGAAKAEP 286
Query 308 KTAPATNAAAPTE---AGDTDDGAESDASTERPADTSNPARRNSGP 350
AT A T+ A D+ A D E P + +R P
Sbjct 287 AARSATEPTAGTKAEPAAKADEPASHDEPGEIPGVIEDRSRDADKP 332
>gi|331700391|ref|YP_004336630.1| membrane protein [Pseudonocardia dioxanivorans CB1190]
gi|326955080|gb|AEA28777.1| membrane protein insertase, YidC/Oxa1 family [Pseudonocardia
dioxanivorans CB1190]
Length=365
Score = 332 bits (851), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 174/378 (47%), Positives = 230/378 (61%), Gaps = 36/378 (9%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQM 69
L+FIYYPVS I+W W++ F FV P++ AWAL+V+FLVFTLRA+LYKPFV Q+R+ R+M
Sbjct 2 LNFIYYPVSAILWFWHKAFGFVFSPTSGVAWALAVVFLVFTLRAILYKPFVGQVRSMRKM 61
Query 70 QELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSF 129
QE QP+I+ L+KKY D+Q+M EMQ+LQ E G NP+ GCLP+L Q+PVF+GL+HVLR F
Sbjct 62 QEFQPEIQKLRKKYANDKQKMTQEMQRLQSEQGVNPVGGCLPVLIQVPVFIGLFHVLREF 121
Query 130 NRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLDAFVDFS 189
T NY+F+ DV F+DA+LFGA +GA + G +
Sbjct 122 KPGK---------------TENYIFNAEDVRSFVDADLFGAKLGASIVPLQGAPSLESLG 166
Query 190 RPA--LIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLGVVVG 247
++ V +P+MI+AG+ T+ +R S+ARQ+ AANPQ+A+MNKL LYVFP+GVVVG
Sbjct 167 TTVGQMLVVMIPLMIMAGVFTHITARHSVARQTEVQAANPQSAIMNKLMLYVFPIGVVVG 226
Query 248 GPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKPKRSP 307
PFLPLAI+ YW SNN+WT QQ V+ I+ EE AKK +A R A AP PG KP R+
Sbjct 227 APFLPLAILFYWVSNNLWTLAQQRIVYKKIDAEEAAKKDKATATRQALAPKPGQKPVRNG 286
Query 308 KTAPATNAAAPTEAGDT---------------DDGAE----SDASTERPADTSNPARRNS 348
A + A E T GA+ S + +R A+ +P RN
Sbjct 287 SKAADEDEAGSDEVNLTKDSADAAPADAPPAKKPGAKPVKPSASGQQRGANNGSPNARNG 346
Query 349 GPSARTPRPGVRPKKRKR 366
+ RP K RKR
Sbjct 347 RTTGGGSRPSAARKGRKR 364
>gi|319949435|ref|ZP_08023496.1| putative inner membrane protein translocase component YidC [Dietzia
cinnamea P4]
gi|319436897|gb|EFV91956.1| putative inner membrane protein translocase component YidC [Dietzia
cinnamea P4]
Length=400
Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 172/373 (47%), Positives = 241/373 (65%), Gaps = 15/373 (4%)
Query 5 FDFFSLDFIYYPVSWIMWVWYRLFAFVLG--------PSNFFAWALSVMFLVFTLRALLY 56
F + +YYP+S I+W W+++FAF+ G SN WALSV+FLV TLRALL+
Sbjct 1 MSFITNPLVYYPISGILWFWHKIFAFLGGLLPWVEAPDSNGVIWALSVIFLVVTLRALLF 60
Query 57 KPFVRQIRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQI 116
P +QIR +R+MQELQP++K LQK+Y DR+++A+E +KLQ++ GFNP+LGCLPML QI
Sbjct 61 WPAAKQIRFSRKMQELQPKMKELQKRYKNDREKLAVETRKLQKQEGFNPLLGCLPMLIQI 120
Query 117 PVFLGLYHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYM 176
PVFLGL+HVLRSFNR FG ++ E R TGNYVF+ +V FLDA LFGAP+ +++
Sbjct 121 PVFLGLFHVLRSFNRMGEQFGALGMTAEETRNTGNYVFNADEVQSFLDARLFGAPLSSFI 180
Query 177 TQ-RSGLDAFV------DFSRPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQT 229
+Q AFV DF+R +I V VP+MI++ + T+FN+R S++RQS EAAANPQ
Sbjct 181 SQPVEQFQAFVEPGAALDFARWNIILVAVPLMIISAVTTHFNARVSLSRQSPEAAANPQA 240
Query 230 AMMNKLALYVFPLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAV 289
+MN+L L+ FP+G++V G F P+AI++Y +NN+WT GQQ++++ + KE++A
Sbjct 241 KIMNQLMLWAFPIGILVTGAFWPMAILVYMVTNNLWTLGQQYFLYERMAKEDDAAALARR 300
Query 290 RRRAANAPAPGAKPKRSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSG 349
+ A AP G KP K + +AAA A T +D + P +
Sbjct 301 EEQKALAPRVGVKPVNPKKGRGSGSAAASGTAVATAPTVGADEVKGDDDEVVPPKAAPAS 360
Query 350 PSARTPRPGVRPK 362
PS PRPG RP+
Sbjct 361 PSPSGPRPGQRPQ 373
>gi|256381073|ref|YP_003104733.1| 60 kDa inner membrane insertion protein [Actinosynnema mirum
DSM 43827]
gi|255925376|gb|ACU40887.1| 60 kDa inner membrane insertion protein [Actinosynnema mirum
DSM 43827]
Length=358
Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 169/372 (46%), Positives = 228/372 (62%), Gaps = 43/372 (11%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQM 69
L+FIYYPVS+I+W W+ +F + G S+ AWALSV+FLVFTLRALL+KPFV Q+R+ R+M
Sbjct 2 LNFIYYPVSFILWCWHWVFGRIFGESSGIAWALSVIFLVFTLRALLFKPFVGQVRSMRKM 61
Query 70 QELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSF 129
QE P+++ ++KKY DRQR A EMQKLQ EHG NP+ GCLPML QIPVF+GL+HVLRSF
Sbjct 62 QEFAPELQKIKKKYANDRQRQAQEMQKLQAEHGVNPLGGCLPMLVQIPVFIGLFHVLRSF 121
Query 130 NRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLDAFVDFS 189
G+G+ Y F V F+ A LFGA + ++T + S
Sbjct 122 KP---GWGE------------VYFFDKAGVDSFVQAKLFGANLSTFITMPADQLELFSTS 166
Query 190 RPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLGVVVGGP 249
R A++AV +P+ ++A +AT+F R S+ARQ+ AA NPQTA+MNKL +YVFPLG + GG
Sbjct 167 RTAVMAVAIPLAVVAAVATHFTGRHSVARQTQAAAENPQTAIMNKLVVYVFPLGALAGGF 226
Query 250 FLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKPK----- 304
F P+AI+LYW SNN WT QQ V+G I++EE A+K A+ +R + AP PG KPK
Sbjct 227 FFPVAILLYWLSNNGWTLMQQRVVYGRIDREEAAQKAAAIEQRQSLAPKPGTKPKPGAKP 286
Query 305 --------------------RSPKTAPATNAAAPTEAGDTDDGAESDASTERPADTS--- 341
+ PK A A E+G D+G SD+S + + S
Sbjct 287 VRNAGVKAVNAKAAGLKPPTQRPKNGTAPKTTATPESGAADEGTTSDSSANQISGLSPDR 346
Query 342 NPARRNSGPSAR 353
+P+++ R
Sbjct 347 SPSKKQGNKKRR 358
>gi|291004516|ref|ZP_06562489.1| putative inner membrane protein translocase component YidC [Saccharopolyspora
erythraea NRRL 2338]
Length=350
Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 162/364 (45%), Positives = 221/364 (61%), Gaps = 25/364 (6%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQM 69
DFI YPVS I+W W+++F FVLGP N FAWALSV FLVF+LR +L KP + Q+R R+M
Sbjct 2 FDFILYPVSAILWFWHKIFGFVLGPDNGFAWALSVFFLVFSLRVVLLKPAISQMRAGRKM 61
Query 70 QELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSF 129
Q+ PQI+ L++K+ DRQRMA EMQKLQ EHG NP+ GCLP L QIPVFL L+ VLR F
Sbjct 62 QKFAPQIQKLREKHKNDRQRMAQEMQKLQSEHGVNPLGGCLPALLQIPVFLSLFTVLRDF 121
Query 130 NRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLDAFVDFS 189
G P NY+F V F++A++FGA + ++ Q A +
Sbjct 122 KP-----GAPS----------NYIFDADGVRSFVEADIFGAKLSNWIVQSDQELALFGTT 166
Query 190 RPALIAVGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLGVVVGGP 249
R +I VGVP+MI+A +AT+F+ R S+ RQ+ A ANPQTAMM KL +Y+ P+G +V GP
Sbjct 167 RTDMIMVGVPLMIIASVATFFSMRISMKRQTEAAMANPQTAMMGKLMMYIAPVGAIVSGP 226
Query 250 FLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEE-AKKQEAVRRRAANAPAPGAKPKRSPK 308
FLP+A++LYW +NN WT GQ H++ I++EE+ AK+ E ++ A P PG KP
Sbjct 227 FLPIAVLLYWMANNFWTLGQAHFLTNKIDREEQKAKEAEIAAKKEAPRPKPGQKPTAKQS 286
Query 309 TA----PATNAAAPTEAGDTDDGAESDAST-----ERPADTSNPARRNSGPSARTPRPGV 359
A P +N A T GA+S ++ RP ++ G A + + G
Sbjct 287 QAVVQSPDSNGTETATAEKTGGGAQSKSANGQRAGGRPGGKKTQSKNRPGKQAASAKKGQ 346
Query 360 RPKK 363
R ++
Sbjct 347 RKRR 350
>gi|324999878|ref|ZP_08120990.1| preprotein translocase subunit YidC [Pseudonocardia sp. P1]
Length=388
Score = 309 bits (791), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 162/346 (47%), Positives = 219/346 (64%), Gaps = 36/346 (10%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQM 69
LDFIYYPVS+IMWVW+++F FVLG + FAWALSV+FLVFTLR +LYKPFV Q+R+ R+M
Sbjct 2 LDFIYYPVSFIMWVWHKVFGFVLGEDSGFAWALSVVFLVFTLRLILYKPFVTQVRSMRKM 61
Query 70 QELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSF 129
QE+ P+++ L+KKY DRQ++A EMQKLQ+++G NP++GCLP+L QIPVF+GL+HVLR F
Sbjct 62 QEMAPEMQKLRKKYANDRQKLATEMQKLQQQNGANPLMGCLPILVQIPVFIGLFHVLREF 121
Query 130 NRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLDAFVDF- 188
T NY F+ + F+D++LFG+ +G+ + + D
Sbjct 122 KPGK---------------TENYFFNAQENASFVDSDLFGSKLGSAIFPLQNTASVTDLG 166
Query 189 -SRPALIAVGVPVMILAGIATYFNSRASIAR-----QSAEAAANPQTAMMNKLALYVFPL 242
+ A V VP+MI AGI T+ +R S+AR + AAANPQ +M KL LYVFP+
Sbjct 167 GNYVAQWVVMVPLMIAAGIFTHITARHSVARQQAQIAAGTAAANPQAEIMQKLMLYVFPI 226
Query 243 GVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAK 302
GVVVG PFLPLA++ YW SNN+WT QQH+V+ I+ EE K+++AV + AP PG K
Sbjct 227 GVVVGAPFLPLAVLFYWVSNNLWTLWQQHHVYKRIDAEESEKREKAVETAKSLAPRPGQK 286
Query 303 PKRSPKTAPATN--------------AAAPTEAGDTDDGAESDAST 334
P R A + AAAP + G+ +D T
Sbjct 287 PVRKDGKGTAKDVRDIADEPLSEDEEAAAPKGSDGASAGSGADGGT 332
>gi|258655508|ref|YP_003204664.1| hypothetical protein Namu_5412 [Nakamurella multipartita DSM
44233]
gi|258558733|gb|ACV81675.1| 60 kDa inner membrane insertion protein [Nakamurella multipartita
DSM 44233]
Length=385
Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 164/354 (47%), Positives = 223/354 (63%), Gaps = 15/354 (4%)
Query 3 LLFDFFSLDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQ 62
+ F+F+SLD+IYYPVS IMWVW+++F VLGP W LSV+FL+FTLRA+L+KPF++Q
Sbjct 1 MTFNFWSLDYIYYPVSGIMWVWHKIFGAVLGPDQAITWVLSVIFLIFTLRAILFKPFMKQ 60
Query 63 IRTTRQMQELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGL 122
+ + +MQ +QP++K L++KY D+QR++ EM KL +E G NP+ CLP L Q PVF+GL
Sbjct 61 MESQLKMQAIQPRMKQLREKYKDDKQRLSEEMMKLNKEAGVNPLASCLPALIQAPVFIGL 120
Query 123 YHVLRSFNRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANL-FGAPIGAYMTQRSG 181
+HVLR F G G P + + Y F+ DV A L GAP+ YMT ++
Sbjct 121 FHVLRMFQPVNDGPGGPSVWFYRENV---YFFNHADVVSMGGAKLPGGAPLVGYMTMQAD 177
Query 182 LDAFVDFSRPALIAVGVPVMILAGIATYFNSRASIARQS---AEAAANPQTAMMNKLALY 238
AF+D R A+I GVP+ ILAGIAT+ SR S+ARQ+ +AAANPQTA+MNKL LY
Sbjct 178 QLAFMDGVREAIIWWGVPLTILAGIATHMTSRRSVARQAQMNVDAAANPQTAIMNKLMLY 237
Query 239 VFPLGVVVGGPFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQ---EAVRRRAAN 295
+FPL V+ GGPF PLAI+ YW +NN WTFGQ + + +++ A+ Q EA
Sbjct 238 MFPLFVIFGGPFFPLAILFYWLANNSWTFGQLYVAHRIQDRKALAQAQVVEEAKEASRFT 297
Query 296 APAPGAKPKRS---PKTAPA--TNAAAPTEAGDTDDGAESDASTERPADTSNPA 344
P PGA+PK S P P+ T+ A A T A + + +P + PA
Sbjct 298 TPKPGARPKGSANRPVVTPSKLTDPAGEASANGTGPAATNGSPNGKPKGSGTPA 351
>gi|257057913|ref|YP_003135745.1| preprotein translocase subunit YidC [Saccharomonospora viridis
DSM 43017]
gi|256587785|gb|ACU98918.1| preprotein translocase subunit YidC [Saccharomonospora viridis
DSM 43017]
Length=346
Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 159/361 (45%), Positives = 220/361 (61%), Gaps = 21/361 (5%)
Query 10 LDFIYYPVSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQM 69
LDFIYYPVS+I+WVW+++F FV G N AW L ++FL FT+R LL+KPFV Q+R+ R+M
Sbjct 2 LDFIYYPVSFILWVWHKVFGFVFGEDNAIAWVLGIVFLTFTVRGLLFKPFVNQVRSMRKM 61
Query 70 QELQPQIKALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSF 129
Q+ P++K +QKKY DRQR A+E+Q+LQREHG NP CLP+L QIPVF+GL VLR+F
Sbjct 62 QDFAPEVKRIQKKYANDRQRQAMELQRLQREHGVNPFGSCLPILLQIPVFIGLNWVLRNF 121
Query 130 NRTTGGFGQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLDAFVDFS 189
NY F DV ++DA +FG +G + D
Sbjct 122 RPGA---------------ESNYFFDADDVASYVDAQIFGINLGDAINHLGLAGGGGDSG 166
Query 190 RPALIA-VGVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLGVVVGG 248
+A + VP+MI+AGIAT+ +R S+ARQ+ A+A PQTA+MN+L LYVFP GVVV G
Sbjct 167 WNWDVAPLAVPLMIVAGIATHLTARHSVARQNP-ASATPQTAVMNRLTLYVFPAGVVVFG 225
Query 249 PFLPLAIILYWFSNNIWTFGQQHYVFGMIEKEEEAKKQEAVRRRAANAPAPGAKPKRSPK 308
F P+ +++YW +NN+WT GQQ +V+ I+KEEEAK+Q A +R + AP PG KP+ K
Sbjct 226 AFFPIGLLIYWLANNVWTLGQQRFVYKKIDKEEEAKRQAAKEKRDSLAPKPGQKPQVGQK 285
Query 309 TAPATNAAAPTEAGDTDDGAESDASTERPADTSNPARRNSGPSARTPRPGVRPKK---RK 365
P A + A + + + + + P + + R + RP + KK RK
Sbjct 286 PKPGQKPAQKS-APKQQNQSHNTKNGKSPKGSGSSVRGGAWAKNGGNRPANQGKKTQGRK 344
Query 366 R 366
R
Sbjct 345 R 345
>gi|134097490|ref|YP_001103151.1| putative inner membrane protein translocase component YidC [Saccharopolyspora
erythraea NRRL 2338]
gi|133910113|emb|CAM00226.1| 60 kDa membrane insertion protein [Saccharopolyspora erythraea
NRRL 2338]
Length=342
Score = 301 bits (772), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 156/357 (44%), Positives = 216/357 (61%), Gaps = 25/357 (7%)
Query 17 VSWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTLRALLYKPFVRQIRTTRQMQELQPQI 76
+S I+W W+++F FVLGP N FAWALSV FLVF+LR +L KP + Q+R R+MQ+ PQI
Sbjct 1 MSAILWFWHKIFGFVLGPDNGFAWALSVFFLVFSLRVVLLKPAISQMRAGRKMQKFAPQI 60
Query 77 KALQKKYGKDRQRMALEMQKLQREHGFNPILGCLPMLAQIPVFLGLYHVLRSFNRTTGGF 136
+ L++K+ DRQRMA EMQKLQ EHG NP+ GCLP L QIPVFL L+ VLR F
Sbjct 61 QKLREKHKNDRQRMAQEMQKLQSEHGVNPLGGCLPALLQIPVFLSLFTVLRDFKP----- 115
Query 137 GQPHLSVIENRLTGNYVFSPVDVGHFLDANLFGAPIGAYMTQRSGLDAFVDFSRPALIAV 196
G P NY+F V F++A++FGA + ++ Q A +R +I V
Sbjct 116 GAPS----------NYIFDADGVRSFVEADIFGAKLSNWIVQSDQELALFGTTRTDMIMV 165
Query 197 GVPVMILAGIATYFNSRASIARQSAEAAANPQTAMMNKLALYVFPLGVVVGGPFLPLAII 256
GVP+MI+A +AT+F+ R S+ RQ+ A ANPQTAMM KL +Y+ P+G +V GPFLP+A++
Sbjct 166 GVPLMIIASVATFFSMRISMKRQTEAAMANPQTAMMGKLMMYIAPVGAIVSGPFLPIAVL 225
Query 257 LYWFSNNIWTFGQQHYVFGMIEKEEE-AKKQEAVRRRAANAPAPGAKPKRSPKTA----P 311
LYW +NN WT GQ H++ I++EE+ AK+ E ++ A P PG KP A P
Sbjct 226 LYWMANNFWTLGQAHFLTNKIDREEQKAKEAEIAAKKEAPRPKPGQKPTAKQSQAVVQSP 285
Query 312 ATNAAAPTEAGDTDDGAESDAST-----ERPADTSNPARRNSGPSARTPRPGVRPKK 363
+N A T GA+S ++ RP ++ G A + + G R ++
Sbjct 286 DSNGTETATAEKTGGGAQSKSANGQRAGGRPGGKKTQSKNRPGKQAASAKKGQRKRR 342
Lambda K H
0.323 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 691311498750
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40