BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ML0252 (1224 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,153,314 sequences; 3,808,957,724 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|Q9CD43|Q9CD43_MYCLE Tax_Id=1769 (mfd)SubName: Full=Putative t... 2283 0.0 tr|B8ZU68|B8ZU68_MYCLB Tax_Id=561304 (mfd)SubName: Full=Putative... 2281 0.0 sp|P64326|MFD_MYCTU Tax_Id=1773 (mfd)RecName: Full=Transcription... 1925 0.0 sp|P64327|MFD_MYCBO Tax_Id=1765 (mfd)RecName: Full=Transcription... 1925 0.0 tr|C6DVT3|C6DVT3_MYCTK Tax_Id=478434 SubName: Full=Transcription... 1925 0.0 tr|C1AM11|C1AM11_MYCBT Tax_Id=561275 (mfd)SubName: Full=Putative... 1925 0.0 tr|A5U163|A5U163_MYCTA Tax_Id=419947 (mfd)SubName: Full=Transcri... 1925 0.0 tr|A1KHF8|A1KHF8_MYCBP Tax_Id=410289 (mfd)SubName: Full=Probable... 1925 0.0 tr|A5WL42|A5WL42_MYCTF Tax_Id=336982 SubName: Full=Transcription... 1925 0.0 tr|A4KFW0|A4KFW0_MYCTU Tax_Id=395095 SubName: Full=Transcription... 1925 0.0 tr|Q741V0|Q741V0_MYCPA Tax_Id=1770 (mfd)SubName: Full=Mfd;[Mycob... 1918 0.0 tr|B2HDI8|B2HDI8_MYCMM Tax_Id=216594 (mfd)SubName: Full=Transcri... 1909 0.0 tr|A0PW58|A0PW58_MYCUA Tax_Id=362242 (mfd)SubName: Full=Transcri... 1894 0.0 tr|A0R3C5|A0R3C5_MYCS2 Tax_Id=246196 (mfd)SubName: Full=Transcri... 1778 0.0 tr|A1TEF0|A1TEF0_MYCVP Tax_Id=350058 SubName: Full=Transcription... 1771 0.0 tr|A3Q5G2|A3Q5G2_MYCSJ Tax_Id=164757 SubName: Full=Transcription... 1769 0.0 tr|Q1B434|Q1B434_MYCSS Tax_Id=164756 SubName: Full=Transcription... 1767 0.0 tr|A1UL14|A1UL14_MYCSK Tax_Id=189918 SubName: Full=Transcription... 1767 0.0 tr|A4T6M5|A4T6M5_MYCGI Tax_Id=350054 SubName: Full=Transcription... 1727 0.0 tr|B1MKF3|B1MKF3_MYCA9 Tax_Id=561007 SubName: Full=Probable tran... 1626 0.0 tr|Q0S4J8|Q0S4J8_RHOSR Tax_Id=101510 SubName: Full=Transcription... 1534 0.0 tr|C1AY76|C1AY76_RHOOB Tax_Id=632772 (mfd)SubName: Full=Transcri... 1532 0.0 tr|Q5YQ14|Q5YQ14_NOCFA Tax_Id=37329 (mfd)SubName: Full=Putative ... 1527 0.0 tr|C1A324|C1A324_RHOE4 Tax_Id=234621 (mfd)SubName: Full=Transcri... 1509 0.0 tr|C3JX01|C3JX01_RHOER Tax_Id=596309 (mfd)SubName: Full=Transcri... 1509 0.0 tr|D0L750|D0L750_9ACTO Tax_Id=526226 SubName: Full=Transcription... 1399 0.0 tr|C6WJJ6|C6WJJ6_ACTMD Tax_Id=446462 SubName: Full=Transcription... 1362 0.0 tr|A4F7Z2|A4F7Z2_SACEN Tax_Id=405948 (mfd)SubName: Full=Transcri... 1359 0.0 tr|C7MZH3|C7MZH3_SACVD Tax_Id=471857 SubName: Full=Transcription... 1331 0.0 tr|Q8FQT5|Q8FQT5_COREF Tax_Id=152794 SubName: Full=Putative tran... 1283 0.0 tr|C8NN51|C8NN51_COREF Tax_Id=196164 (mfd)SubName: Full=Transcri... 1283 0.0 tr|A4QCT9|A4QCT9_CORGB Tax_Id=340322 SubName: Full=Putative unch... 1279 0.0 tr|Q6M6I8|Q6M6I8_CORGL Tax_Id=1718 (mfd)SubName: Full=PUTATIVE T... 1277 0.0 tr|Q6NI67|Q6NI67_CORDI Tax_Id=1717 (mfd)SubName: Full=Transcript... 1274 0.0 tr|Q8NRS9|Q8NRS9_CORGL Tax_Id=1718 SubName: Full=Transcription-r... 1271 0.0 tr|C5VBF1|C5VBF1_9CORY Tax_Id=553207 (mfd)SubName: Full=Transcri... 1264 0.0 tr|Q4JU44|Q4JU44_CORJK Tax_Id=306537 (mfd)SubName: Full=Transcri... 1260 0.0 tr|C8RQD1|C8RQD1_CORJE Tax_Id=525262 (mfd)SubName: Full=Transcri... 1260 0.0 tr|C0E7P9|C0E7P9_9CORY Tax_Id=566549 SubName: Full=Putative unch... 1259 0.0 tr|C4LHL4|C4LHL4_CORK4 Tax_Id=645127 SubName: Full=Transcription... 1248 0.0 tr|C3PFA1|C3PFA1_CORA7 Tax_Id=548476 (mfd)SubName: Full=Transcri... 1241 0.0 tr|B1VFK5|B1VFK5_CORU7 Tax_Id=504474 SubName: Full=Transcription... 1240 0.0 tr|C2BQC5|C2BQC5_9CORY Tax_Id=525264 SubName: Full=Possible tran... 1239 0.0 tr|C0WFA9|C0WFA9_9CORY Tax_Id=525260 SubName: Full=Possible tran... 1238 0.0 tr|C6RB20|C6RB20_9CORY Tax_Id=553206 (mfd)SubName: Full=Transcri... 1236 0.0 tr|C2CLV5|C2CLV5_CORST Tax_Id=525268 (mfd)SubName: Full=Transcri... 1235 0.0 tr|C0XQ03|C0XQ03_9CORY Tax_Id=525263 SubName: Full=Possible tran... 1224 0.0 tr|C8X6Q6|C8X6Q6_NAKMY Tax_Id=479431 SubName: Full=Transcription... 1219 0.0 tr|C8NVV2|C8NVV2_9CORY Tax_Id=585529 (mfd)SubName: Full=Transcri... 1215 0.0 tr|C2GIP0|C2GIP0_9CORY Tax_Id=548478 (mfd)SubName: Full=Transcri... 1203 0.0 >tr|Q9CD43|Q9CD43_MYCLE Tax_Id=1769 (mfd)SubName: Full=Putative transcription-repair coupling factor;[Mycobacterium leprae] Length = 1224 Score = 2283 bits (5915), Expect = 0.0 Identities = 1177/1224 (96%), Positives = 1177/1224 (96%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG Sbjct: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH Sbjct: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD Sbjct: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI Sbjct: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 ACRELLLSDDV PTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL Sbjct: 241 ACRELLLSDDVRARAVELAAQAAARRPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV 360 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV Sbjct: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV 360 Query: 361 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFAM 420 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFAM Sbjct: 361 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFAM 420 Query: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXX 480 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDI Sbjct: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIPGAMLEPAAAPGLGLRPGLVGVLKGPL 480 Query: 481 XXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGR 540 IPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGR Sbjct: 481 LDGVVIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGR 540 Query: 541 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS 600 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS Sbjct: 541 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS 600 Query: 601 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA 660 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA Sbjct: 601 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA 660 Query: 661 ITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT 720 ITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT Sbjct: 661 ITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT 720 Query: 721 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV 780 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV Sbjct: 721 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV 780 Query: 781 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 840 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT Sbjct: 781 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 840 Query: 841 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED 900 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED Sbjct: 841 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED 900 Query: 901 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE 960 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE Sbjct: 901 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE 960 Query: 961 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1020 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA Sbjct: 961 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1020 Query: 1021 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG Sbjct: 1021 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1081 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM 1140 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM Sbjct: 1081 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM 1140 Query: 1141 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA 1200 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA Sbjct: 1141 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA 1200 Query: 1201 DLITALQGLPRKVIGITGPEPTSK 1224 DLITALQGLPRKVIGITGPEPTSK Sbjct: 1201 DLITALQGLPRKVIGITGPEPTSK 1224 >tr|B8ZU68|B8ZU68_MYCLB Tax_Id=561304 (mfd)SubName: Full=Putative transcription-repair coupling factor;[Mycobacterium leprae] Length = 1224 Score = 2281 bits (5911), Expect = 0.0 Identities = 1176/1224 (96%), Positives = 1176/1224 (96%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG Sbjct: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH Sbjct: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD Sbjct: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI Sbjct: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 ACRELLLSDDV PTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL Sbjct: 241 ACRELLLSDDVRARAVELAAQAAARRPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV 360 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV Sbjct: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV 360 Query: 361 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFAM 420 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFAM Sbjct: 361 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFAM 420 Query: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXX 480 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDI Sbjct: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIPGAMLEPAAAPGLGLRPGLVGVLKGPL 480 Query: 481 XXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGR 540 IPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGR Sbjct: 481 LDGVVIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGR 540 Query: 541 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS 600 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS Sbjct: 541 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS 600 Query: 601 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA 660 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA Sbjct: 601 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA 660 Query: 661 ITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT 720 ITEVKGDMEKSVPMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT Sbjct: 661 ITEVKGDMEKSVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT 720 Query: 721 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV 780 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV Sbjct: 721 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV 780 Query: 781 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 840 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT Sbjct: 781 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 840 Query: 841 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED 900 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED Sbjct: 841 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED 900 Query: 901 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE 960 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE Sbjct: 901 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE 960 Query: 961 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1020 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA Sbjct: 961 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1020 Query: 1021 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG Sbjct: 1021 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1081 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM 1140 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM Sbjct: 1081 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM 1140 Query: 1141 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA 1200 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA Sbjct: 1141 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA 1200 Query: 1201 DLITALQGLPRKVIGITGPEPTSK 1224 DLITALQGLPRKVIGITGPEPTSK Sbjct: 1201 DLITALQGLPRKVIGITGPEPTSK 1224 >sp|P64326|MFD_MYCTU Tax_Id=1773 (mfd)RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.1.-; AltName: Full=ATP-dependent helicase mfd;[Mycobacterium tuberculosis] Length = 1234 Score = 1925 bits (4987), Expect = 0.0 Identities = 1009/1229 (82%), Positives = 1067/1229 (86%), Gaps = 20/1229 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MTAPGPAC DTPIAGLVELAL+APTF QLM+RAG RP EL L PA ARL VASALAR G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVVTATGREA +L AELRGVFG AVA+ PSWETLPHERLSPGVDTVG RLM LRRLAH Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDDA+LGPPL VVVT+VRSLLQPMT QLG++EP+TL+VGDE F+ V+ARLVELAYTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MVGRRGEFAVRGGILDIF PTAEHPVRVEFWGDEITEMRMFSV DQRSIPEI + TLVA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 ACRELLLS+DV P E ++GS +D+LAKLAEGI VDGMEA+LPVL Sbjct: 241 ACRELLLSEDVRARAAQLAARH----PAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIG-ADNAAPVD 359 D +ALLTDQ TPVL+CDPEKVR +AADLI+T R FLEASWSVAA+G A+N APVD Sbjct: 297 WSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVD 356 Query: 360 VEQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFA 419 VEQL GSGFVEL V+AAA R+GHPWWTLSQLSDESA+ELD+RAAPS RGHQ ID IFA Sbjct: 357 VEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFA 416 Query: 420 MLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXX 479 MLRAH+ATGGYAA+V PGTGTAHRVVERL+ESD Sbjct: 417 MLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDG 476 Query: 480 XXXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIG 539 IPGANLV+ITE DLTGSR + EGKRLAAKRR+ DPLALTAGDLVVHDQHGIG Sbjct: 477 VI----IPGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIG 532 Query: 540 RFVEMVERTVGGARREYLVLEYASNKK---SKQADKLYVPMDSLDQLSRYVGGQAPALSR 596 RFVEMVERTVGGARREYLVLEYAS K+ +K DKLYVPMDSLDQLSRYVGGQAPALSR Sbjct: 533 RFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSR 592 Query: 597 LGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVD 656 LGGSDWANTKTKAR AVREIAGELVSLYAKRQASPGHAF PDTPWQAE+EDAFGFTETVD Sbjct: 593 LGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVD 652 Query: 657 QLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 716 QLTAI EVK DMEK +PMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQ Sbjct: 653 QLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 712 Query: 717 HLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLG 776 HL+TF ERM+GFPVT+KGLSRFTDAAESRAVIDGLA+GSVDIVIGTHRLLQTGV WKDLG Sbjct: 713 HLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLG 772 Query: 777 LVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 836 LVVVDEEQ FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY Sbjct: 773 LVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 832 Query: 837 PVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQ 896 PVLTYVGPHDDKQ+AAALRRELLRDGQAFYVHNRVSSI AAARV LVPEARVVVAHGQ Sbjct: 833 PVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQ 892 Query: 897 MPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVG 956 MPEDLLETT++ FWNRE+DILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVG Sbjct: 893 MPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVG 952 Query: 957 RSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQS 1016 RS ERGYAYFLYPPQ PLTE AYDRL TIAQNNELGAGMAVALKDLEIRGAGNVLG+EQS Sbjct: 953 RSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQS 1012 Query: 1017 GHVAGVGFDLYVRLVGEAVE----AYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIA 1072 GHVAGVGFDLYVRLVGEA+E AYRA ADG+T T EEPKDVRIDLPVDAHLPPDYIA Sbjct: 1013 GHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIA 1072 Query: 1073 SDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEV 1132 SDRLRLEGYRRLAAASSD EVAAVVDEL DRYGALPEPA+RL AVA+LRLLCRGSGI +V Sbjct: 1073 SDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDV 1132 Query: 1133 TAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRD 1192 TA SA+T+RLSP+ L DSAQVRLKRMYPGA YRAT ATVQVPIPRAG LG P IRD Sbjct: 1133 TAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGG----LGAPRIRD 1188 Query: 1193 VELVQAVADLITALQGLPRKVIGITGPEP 1221 VELVQ VADLITAL G PR+ IGIT P P Sbjct: 1189 VELVQMVADLITALAGKPRQHIGITNPSP 1217 >sp|P64327|MFD_MYCBO Tax_Id=1765 (mfd)RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.1.-; AltName: Full=ATP-dependent helicase mfd;[Mycobacterium bovis] Length = 1234 Score = 1925 bits (4987), Expect = 0.0 Identities = 1009/1229 (82%), Positives = 1067/1229 (86%), Gaps = 20/1229 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MTAPGPAC DTPIAGLVELAL+APTF QLM+RAG RP EL L PA ARL VASALAR G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVVTATGREA +L AELRGVFG AVA+ PSWETLPHERLSPGVDTVG RLM LRRLAH Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDDA+LGPPL VVVT+VRSLLQPMT QLG++EP+TL+VGDE F+ V+ARLVELAYTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MVGRRGEFAVRGGILDIF PTAEHPVRVEFWGDEITEMRMFSV DQRSIPEI + TLVA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 ACRELLLS+DV P E ++GS +D+LAKLAEGI VDGMEA+LPVL Sbjct: 241 ACRELLLSEDVRARAAQLAARH----PAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIG-ADNAAPVD 359 D +ALLTDQ TPVL+CDPEKVR +AADLI+T R FLEASWSVAA+G A+N APVD Sbjct: 297 WSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVD 356 Query: 360 VEQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFA 419 VEQL GSGFVEL V+AAA R+GHPWWTLSQLSDESA+ELD+RAAPS RGHQ ID IFA Sbjct: 357 VEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFA 416 Query: 420 MLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXX 479 MLRAH+ATGGYAA+V PGTGTAHRVVERL+ESD Sbjct: 417 MLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDG 476 Query: 480 XXXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIG 539 IPGANLV+ITE DLTGSR + EGKRLAAKRR+ DPLALTAGDLVVHDQHGIG Sbjct: 477 VI----IPGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIG 532 Query: 540 RFVEMVERTVGGARREYLVLEYASNKK---SKQADKLYVPMDSLDQLSRYVGGQAPALSR 596 RFVEMVERTVGGARREYLVLEYAS K+ +K DKLYVPMDSLDQLSRYVGGQAPALSR Sbjct: 533 RFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSR 592 Query: 597 LGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVD 656 LGGSDWANTKTKAR AVREIAGELVSLYAKRQASPGHAF PDTPWQAE+EDAFGFTETVD Sbjct: 593 LGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVD 652 Query: 657 QLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 716 QLTAI EVK DMEK +PMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQ Sbjct: 653 QLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 712 Query: 717 HLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLG 776 HL+TF ERM+GFPVT+KGLSRFTDAAESRAVIDGLA+GSVDIVIGTHRLLQTGV WKDLG Sbjct: 713 HLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLG 772 Query: 777 LVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 836 LVVVDEEQ FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY Sbjct: 773 LVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 832 Query: 837 PVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQ 896 PVLTYVGPHDDKQ+AAALRRELLRDGQAFYVHNRVSSI AAARV LVPEARVVVAHGQ Sbjct: 833 PVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQ 892 Query: 897 MPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVG 956 MPEDLLETT++ FWNRE+DILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVG Sbjct: 893 MPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVG 952 Query: 957 RSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQS 1016 RS ERGYAYFLYPPQ PLTE AYDRL TIAQNNELGAGMAVALKDLEIRGAGNVLG+EQS Sbjct: 953 RSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQS 1012 Query: 1017 GHVAGVGFDLYVRLVGEAVE----AYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIA 1072 GHVAGVGFDLYVRLVGEA+E AYRA ADG+T T EEPKDVRIDLPVDAHLPPDYIA Sbjct: 1013 GHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIA 1072 Query: 1073 SDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEV 1132 SDRLRLEGYRRLAAASSD EVAAVVDEL DRYGALPEPA+RL AVA+LRLLCRGSGI +V Sbjct: 1073 SDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDV 1132 Query: 1133 TAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRD 1192 TA SA+T+RLSP+ L DSAQVRLKRMYPGA YRAT ATVQVPIPRAG LG P IRD Sbjct: 1133 TAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGG----LGAPRIRD 1188 Query: 1193 VELVQAVADLITALQGLPRKVIGITGPEP 1221 VELVQ VADLITAL G PR+ IGIT P P Sbjct: 1189 VELVQMVADLITALAGKPRQHIGITNPSP 1217 >tr|C6DVT3|C6DVT3_MYCTK Tax_Id=478434 SubName: Full=Transcription-repair coupling factor mfd;[Mycobacterium tuberculosis] Length = 1234 Score = 1925 bits (4987), Expect = 0.0 Identities = 1009/1229 (82%), Positives = 1067/1229 (86%), Gaps = 20/1229 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MTAPGPAC DTPIAGLVELAL+APTF QLM+RAG RP EL L PA ARL VASALAR G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVVTATGREA +L AELRGVFG AVA+ PSWETLPHERLSPGVDTVG RLM LRRLAH Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDDA+LGPPL VVVT+VRSLLQPMT QLG++EP+TL+VGDE F+ V+ARLVELAYTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MVGRRGEFAVRGGILDIF PTAEHPVRVEFWGDEITEMRMFSV DQRSIPEI + TLVA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 ACRELLLS+DV P E ++GS +D+LAKLAEGI VDGMEA+LPVL Sbjct: 241 ACRELLLSEDVRARAAQLAARH----PAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIG-ADNAAPVD 359 D +ALLTDQ TPVL+CDPEKVR +AADLI+T R FLEASWSVAA+G A+N APVD Sbjct: 297 WSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVD 356 Query: 360 VEQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFA 419 VEQL GSGFVEL V+AAA R+GHPWWTLSQLSDESA+ELD+RAAPS RGHQ ID IFA Sbjct: 357 VEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFA 416 Query: 420 MLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXX 479 MLRAH+ATGGYAA+V PGTGTAHRVVERL+ESD Sbjct: 417 MLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDG 476 Query: 480 XXXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIG 539 IPGANLV+ITE DLTGSR + EGKRLAAKRR+ DPLALTAGDLVVHDQHGIG Sbjct: 477 VI----IPGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIG 532 Query: 540 RFVEMVERTVGGARREYLVLEYASNKK---SKQADKLYVPMDSLDQLSRYVGGQAPALSR 596 RFVEMVERTVGGARREYLVLEYAS K+ +K DKLYVPMDSLDQLSRYVGGQAPALSR Sbjct: 533 RFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSR 592 Query: 597 LGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVD 656 LGGSDWANTKTKAR AVREIAGELVSLYAKRQASPGHAF PDTPWQAE+EDAFGFTETVD Sbjct: 593 LGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVD 652 Query: 657 QLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 716 QLTAI EVK DMEK +PMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQ Sbjct: 653 QLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 712 Query: 717 HLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLG 776 HL+TF ERM+GFPVT+KGLSRFTDAAESRAVIDGLA+GSVDIVIGTHRLLQTGV WKDLG Sbjct: 713 HLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLG 772 Query: 777 LVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 836 LVVVDEEQ FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY Sbjct: 773 LVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 832 Query: 837 PVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQ 896 PVLTYVGPHDDKQ+AAALRRELLRDGQAFYVHNRVSSI AAARV LVPEARVVVAHGQ Sbjct: 833 PVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQ 892 Query: 897 MPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVG 956 MPEDLLETT++ FWNRE+DILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVG Sbjct: 893 MPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVG 952 Query: 957 RSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQS 1016 RS ERGYAYFLYPPQ PLTE AYDRL TIAQNNELGAGMAVALKDLEIRGAGNVLG+EQS Sbjct: 953 RSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQS 1012 Query: 1017 GHVAGVGFDLYVRLVGEAVE----AYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIA 1072 GHVAGVGFDLYVRLVGEA+E AYRA ADG+T T EEPKDVRIDLPVDAHLPPDYIA Sbjct: 1013 GHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIA 1072 Query: 1073 SDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEV 1132 SDRLRLEGYRRLAAASSD EVAAVVDEL DRYGALPEPA+RL AVA+LRLLCRGSGI +V Sbjct: 1073 SDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDV 1132 Query: 1133 TAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRD 1192 TA SA+T+RLSP+ L DSAQVRLKRMYPGA YRAT ATVQVPIPRAG LG P IRD Sbjct: 1133 TAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGG----LGAPRIRD 1188 Query: 1193 VELVQAVADLITALQGLPRKVIGITGPEP 1221 VELVQ VADLITAL G PR+ IGIT P P Sbjct: 1189 VELVQMVADLITALAGKPRQHIGITNPSP 1217 >tr|C1AM11|C1AM11_MYCBT Tax_Id=561275 (mfd)SubName: Full=Putative transcription-repair coupling factor;[Mycobacterium bovis] Length = 1234 Score = 1925 bits (4987), Expect = 0.0 Identities = 1009/1229 (82%), Positives = 1067/1229 (86%), Gaps = 20/1229 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MTAPGPAC DTPIAGLVELAL+APTF QLM+RAG RP EL L PA ARL VASALAR G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVVTATGREA +L AELRGVFG AVA+ PSWETLPHERLSPGVDTVG RLM LRRLAH Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDDA+LGPPL VVVT+VRSLLQPMT QLG++EP+TL+VGDE F+ V+ARLVELAYTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MVGRRGEFAVRGGILDIF PTAEHPVRVEFWGDEITEMRMFSV DQRSIPEI + TLVA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 ACRELLLS+DV P E ++GS +D+LAKLAEGI VDGMEA+LPVL Sbjct: 241 ACRELLLSEDVRARAAQLAARH----PAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIG-ADNAAPVD 359 D +ALLTDQ TPVL+CDPEKVR +AADLI+T R FLEASWSVAA+G A+N APVD Sbjct: 297 WSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVD 356 Query: 360 VEQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFA 419 VEQL GSGFVEL V+AAA R+GHPWWTLSQLSDESA+ELD+RAAPS RGHQ ID IFA Sbjct: 357 VEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFA 416 Query: 420 MLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXX 479 MLRAH+ATGGYAA+V PGTGTAHRVVERL+ESD Sbjct: 417 MLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDG 476 Query: 480 XXXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIG 539 IPGANLV+ITE DLTGSR + EGKRLAAKRR+ DPLALTAGDLVVHDQHGIG Sbjct: 477 VI----IPGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIG 532 Query: 540 RFVEMVERTVGGARREYLVLEYASNKK---SKQADKLYVPMDSLDQLSRYVGGQAPALSR 596 RFVEMVERTVGGARREYLVLEYAS K+ +K DKLYVPMDSLDQLSRYVGGQAPALSR Sbjct: 533 RFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSR 592 Query: 597 LGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVD 656 LGGSDWANTKTKAR AVREIAGELVSLYAKRQASPGHAF PDTPWQAE+EDAFGFTETVD Sbjct: 593 LGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVD 652 Query: 657 QLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 716 QLTAI EVK DMEK +PMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQ Sbjct: 653 QLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 712 Query: 717 HLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLG 776 HL+TF ERM+GFPVT+KGLSRFTDAAESRAVIDGLA+GSVDIVIGTHRLLQTGV WKDLG Sbjct: 713 HLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLG 772 Query: 777 LVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 836 LVVVDEEQ FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY Sbjct: 773 LVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 832 Query: 837 PVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQ 896 PVLTYVGPHDDKQ+AAALRRELLRDGQAFYVHNRVSSI AAARV LVPEARVVVAHGQ Sbjct: 833 PVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQ 892 Query: 897 MPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVG 956 MPEDLLETT++ FWNRE+DILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVG Sbjct: 893 MPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVG 952 Query: 957 RSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQS 1016 RS ERGYAYFLYPPQ PLTE AYDRL TIAQNNELGAGMAVALKDLEIRGAGNVLG+EQS Sbjct: 953 RSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQS 1012 Query: 1017 GHVAGVGFDLYVRLVGEAVE----AYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIA 1072 GHVAGVGFDLYVRLVGEA+E AYRA ADG+T T EEPKDVRIDLPVDAHLPPDYIA Sbjct: 1013 GHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIA 1072 Query: 1073 SDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEV 1132 SDRLRLEGYRRLAAASSD EVAAVVDEL DRYGALPEPA+RL AVA+LRLLCRGSGI +V Sbjct: 1073 SDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDV 1132 Query: 1133 TAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRD 1192 TA SA+T+RLSP+ L DSAQVRLKRMYPGA YRAT ATVQVPIPRAG LG P IRD Sbjct: 1133 TAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGG----LGAPRIRD 1188 Query: 1193 VELVQAVADLITALQGLPRKVIGITGPEP 1221 VELVQ VADLITAL G PR+ IGIT P P Sbjct: 1189 VELVQMVADLITALAGKPRQHIGITNPSP 1217 >tr|A5U163|A5U163_MYCTA Tax_Id=419947 (mfd)SubName: Full=Transcription-repair coupling factor;[Mycobacterium tuberculosis] Length = 1234 Score = 1925 bits (4987), Expect = 0.0 Identities = 1009/1229 (82%), Positives = 1067/1229 (86%), Gaps = 20/1229 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MTAPGPAC DTPIAGLVELAL+APTF QLM+RAG RP EL L PA ARL VASALAR G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVVTATGREA +L AELRGVFG AVA+ PSWETLPHERLSPGVDTVG RLM LRRLAH Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDDA+LGPPL VVVT+VRSLLQPMT QLG++EP+TL+VGDE F+ V+ARLVELAYTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MVGRRGEFAVRGGILDIF PTAEHPVRVEFWGDEITEMRMFSV DQRSIPEI + TLVA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 ACRELLLS+DV P E ++GS +D+LAKLAEGI VDGMEA+LPVL Sbjct: 241 ACRELLLSEDVRARAAQLAARH----PAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIG-ADNAAPVD 359 D +ALLTDQ TPVL+CDPEKVR +AADLI+T R FLEASWSVAA+G A+N APVD Sbjct: 297 WSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVD 356 Query: 360 VEQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFA 419 VEQL GSGFVEL V+AAA R+GHPWWTLSQLSDESA+ELD+RAAPS RGHQ ID IFA Sbjct: 357 VEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFA 416 Query: 420 MLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXX 479 MLRAH+ATGGYAA+V PGTGTAHRVVERL+ESD Sbjct: 417 MLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDG 476 Query: 480 XXXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIG 539 IPGANLV+ITE DLTGSR + EGKRLAAKRR+ DPLALTAGDLVVHDQHGIG Sbjct: 477 VI----IPGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIG 532 Query: 540 RFVEMVERTVGGARREYLVLEYASNKK---SKQADKLYVPMDSLDQLSRYVGGQAPALSR 596 RFVEMVERTVGGARREYLVLEYAS K+ +K DKLYVPMDSLDQLSRYVGGQAPALSR Sbjct: 533 RFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSR 592 Query: 597 LGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVD 656 LGGSDWANTKTKAR AVREIAGELVSLYAKRQASPGHAF PDTPWQAE+EDAFGFTETVD Sbjct: 593 LGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVD 652 Query: 657 QLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 716 QLTAI EVK DMEK +PMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQ Sbjct: 653 QLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 712 Query: 717 HLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLG 776 HL+TF ERM+GFPVT+KGLSRFTDAAESRAVIDGLA+GSVDIVIGTHRLLQTGV WKDLG Sbjct: 713 HLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLG 772 Query: 777 LVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 836 LVVVDEEQ FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY Sbjct: 773 LVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 832 Query: 837 PVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQ 896 PVLTYVGPHDDKQ+AAALRRELLRDGQAFYVHNRVSSI AAARV LVPEARVVVAHGQ Sbjct: 833 PVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQ 892 Query: 897 MPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVG 956 MPEDLLETT++ FWNRE+DILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVG Sbjct: 893 MPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVG 952 Query: 957 RSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQS 1016 RS ERGYAYFLYPPQ PLTE AYDRL TIAQNNELGAGMAVALKDLEIRGAGNVLG+EQS Sbjct: 953 RSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQS 1012 Query: 1017 GHVAGVGFDLYVRLVGEAVE----AYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIA 1072 GHVAGVGFDLYVRLVGEA+E AYRA ADG+T T EEPKDVRIDLPVDAHLPPDYIA Sbjct: 1013 GHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIA 1072 Query: 1073 SDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEV 1132 SDRLRLEGYRRLAAASSD EVAAVVDEL DRYGALPEPA+RL AVA+LRLLCRGSGI +V Sbjct: 1073 SDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDV 1132 Query: 1133 TAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRD 1192 TA SA+T+RLSP+ L DSAQVRLKRMYPGA YRAT ATVQVPIPRAG LG P IRD Sbjct: 1133 TAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGG----LGAPRIRD 1188 Query: 1193 VELVQAVADLITALQGLPRKVIGITGPEP 1221 VELVQ VADLITAL G PR+ IGIT P P Sbjct: 1189 VELVQMVADLITALAGKPRQHIGITNPSP 1217 >tr|A1KHF8|A1KHF8_MYCBP Tax_Id=410289 (mfd)SubName: Full=Probable transcription-repair coupling factor mfd;[Mycobacterium bovis] Length = 1234 Score = 1925 bits (4987), Expect = 0.0 Identities = 1009/1229 (82%), Positives = 1067/1229 (86%), Gaps = 20/1229 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MTAPGPAC DTPIAGLVELAL+APTF QLM+RAG RP EL L PA ARL VASALAR G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVVTATGREA +L AELRGVFG AVA+ PSWETLPHERLSPGVDTVG RLM LRRLAH Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDDA+LGPPL VVVT+VRSLLQPMT QLG++EP+TL+VGDE F+ V+ARLVELAYTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MVGRRGEFAVRGGILDIF PTAEHPVRVEFWGDEITEMRMFSV DQRSIPEI + TLVA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 ACRELLLS+DV P E ++GS +D+LAKLAEGI VDGMEA+LPVL Sbjct: 241 ACRELLLSEDVRARAAQLAARH----PAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIG-ADNAAPVD 359 D +ALLTDQ TPVL+CDPEKVR +AADLI+T R FLEASWSVAA+G A+N APVD Sbjct: 297 WSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVD 356 Query: 360 VEQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFA 419 VEQL GSGFVEL V+AAA R+GHPWWTLSQLSDESA+ELD+RAAPS RGHQ ID IFA Sbjct: 357 VEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFA 416 Query: 420 MLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXX 479 MLRAH+ATGGYAA+V PGTGTAHRVVERL+ESD Sbjct: 417 MLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDG 476 Query: 480 XXXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIG 539 IPGANLV+ITE DLTGSR + EGKRLAAKRR+ DPLALTAGDLVVHDQHGIG Sbjct: 477 VI----IPGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIG 532 Query: 540 RFVEMVERTVGGARREYLVLEYASNKK---SKQADKLYVPMDSLDQLSRYVGGQAPALSR 596 RFVEMVERTVGGARREYLVLEYAS K+ +K DKLYVPMDSLDQLSRYVGGQAPALSR Sbjct: 533 RFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSR 592 Query: 597 LGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVD 656 LGGSDWANTKTKAR AVREIAGELVSLYAKRQASPGHAF PDTPWQAE+EDAFGFTETVD Sbjct: 593 LGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVD 652 Query: 657 QLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 716 QLTAI EVK DMEK +PMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQ Sbjct: 653 QLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 712 Query: 717 HLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLG 776 HL+TF ERM+GFPVT+KGLSRFTDAAESRAVIDGLA+GSVDIVIGTHRLLQTGV WKDLG Sbjct: 713 HLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLG 772 Query: 777 LVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 836 LVVVDEEQ FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY Sbjct: 773 LVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 832 Query: 837 PVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQ 896 PVLTYVGPHDDKQ+AAALRRELLRDGQAFYVHNRVSSI AAARV LVPEARVVVAHGQ Sbjct: 833 PVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQ 892 Query: 897 MPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVG 956 MPEDLLETT++ FWNRE+DILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVG Sbjct: 893 MPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVG 952 Query: 957 RSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQS 1016 RS ERGYAYFLYPPQ PLTE AYDRL TIAQNNELGAGMAVALKDLEIRGAGNVLG+EQS Sbjct: 953 RSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQS 1012 Query: 1017 GHVAGVGFDLYVRLVGEAVE----AYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIA 1072 GHVAGVGFDLYVRLVGEA+E AYRA ADG+T T EEPKDVRIDLPVDAHLPPDYIA Sbjct: 1013 GHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIA 1072 Query: 1073 SDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEV 1132 SDRLRLEGYRRLAAASSD EVAAVVDEL DRYGALPEPA+RL AVA+LRLLCRGSGI +V Sbjct: 1073 SDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDV 1132 Query: 1133 TAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRD 1192 TA SA+T+RLSP+ L DSAQVRLKRMYPGA YRAT ATVQVPIPRAG LG P IRD Sbjct: 1133 TAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGG----LGAPRIRD 1188 Query: 1193 VELVQAVADLITALQGLPRKVIGITGPEP 1221 VELVQ VADLITAL G PR+ IGIT P P Sbjct: 1189 VELVQMVADLITALAGKPRQHIGITNPSP 1217 >tr|A5WL42|A5WL42_MYCTF Tax_Id=336982 SubName: Full=Transcription-repair coupling factor mfd;[Mycobacterium tuberculosis] Length = 1234 Score = 1925 bits (4987), Expect = 0.0 Identities = 1009/1229 (82%), Positives = 1067/1229 (86%), Gaps = 20/1229 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MTAPGPAC DTPIAGLVELAL+APTF QLM+RAG RP EL L PA ARL VASALAR G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVVTATGREA +L AELRGVFG AVA+ PSWETLPHERLSPGVDTVG RLM LRRLAH Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDDA+LGPPL VVVT+VRSLLQPMT QLG++EP+TL+VGDE F+ V+ARLVELAYTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MVGRRGEFAVRGGILDIF PTAEHPVRVEFWGDEITEMRMFSV DQRSIPEI + TLVA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 ACRELLLS+DV P E ++GS +D+LAKLAEGI VDGMEA+LPVL Sbjct: 241 ACRELLLSEDVRARAAQLAARH----PAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIG-ADNAAPVD 359 D +ALLTDQ TPVL+CDPEKVR +AADLI+T R FLEASWSVAA+G A+N APVD Sbjct: 297 WSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVD 356 Query: 360 VEQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFA 419 VEQL GSGFVEL V+AAA R+GHPWWTLSQLSDESA+ELD+RAAPS RGHQ ID IFA Sbjct: 357 VEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFA 416 Query: 420 MLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXX 479 MLRAH+ATGGYAA+V PGTGTAHRVVERL+ESD Sbjct: 417 MLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDG 476 Query: 480 XXXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIG 539 IPGANLV+ITE DLTGSR + EGKRLAAKRR+ DPLALTAGDLVVHDQHGIG Sbjct: 477 VI----IPGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIG 532 Query: 540 RFVEMVERTVGGARREYLVLEYASNKK---SKQADKLYVPMDSLDQLSRYVGGQAPALSR 596 RFVEMVERTVGGARREYLVLEYAS K+ +K DKLYVPMDSLDQLSRYVGGQAPALSR Sbjct: 533 RFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSR 592 Query: 597 LGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVD 656 LGGSDWANTKTKAR AVREIAGELVSLYAKRQASPGHAF PDTPWQAE+EDAFGFTETVD Sbjct: 593 LGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVD 652 Query: 657 QLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 716 QLTAI EVK DMEK +PMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQ Sbjct: 653 QLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 712 Query: 717 HLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLG 776 HL+TF ERM+GFPVT+KGLSRFTDAAESRAVIDGLA+GSVDIVIGTHRLLQTGV WKDLG Sbjct: 713 HLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLG 772 Query: 777 LVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 836 LVVVDEEQ FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY Sbjct: 773 LVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 832 Query: 837 PVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQ 896 PVLTYVGPHDDKQ+AAALRRELLRDGQAFYVHNRVSSI AAARV LVPEARVVVAHGQ Sbjct: 833 PVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQ 892 Query: 897 MPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVG 956 MPEDLLETT++ FWNRE+DILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVG Sbjct: 893 MPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVG 952 Query: 957 RSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQS 1016 RS ERGYAYFLYPPQ PLTE AYDRL TIAQNNELGAGMAVALKDLEIRGAGNVLG+EQS Sbjct: 953 RSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQS 1012 Query: 1017 GHVAGVGFDLYVRLVGEAVE----AYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIA 1072 GHVAGVGFDLYVRLVGEA+E AYRA ADG+T T EEPKDVRIDLPVDAHLPPDYIA Sbjct: 1013 GHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIA 1072 Query: 1073 SDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEV 1132 SDRLRLEGYRRLAAASSD EVAAVVDEL DRYGALPEPA+RL AVA+LRLLCRGSGI +V Sbjct: 1073 SDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDV 1132 Query: 1133 TAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRD 1192 TA SA+T+RLSP+ L DSAQVRLKRMYPGA YRAT ATVQVPIPRAG LG P IRD Sbjct: 1133 TAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGG----LGAPRIRD 1188 Query: 1193 VELVQAVADLITALQGLPRKVIGITGPEP 1221 VELVQ VADLITAL G PR+ IGIT P P Sbjct: 1189 VELVQMVADLITALAGKPRQHIGITNPSP 1217 >tr|A4KFW0|A4KFW0_MYCTU Tax_Id=395095 SubName: Full=Transcription-repair coupling factor mfd;[Mycobacterium tuberculosis str. Haarlem] Length = 1234 Score = 1925 bits (4987), Expect = 0.0 Identities = 1009/1229 (82%), Positives = 1067/1229 (86%), Gaps = 20/1229 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MTAPGPAC DTPIAGLVELAL+APTF QLM+RAG RP EL L PA ARL VASALAR G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVVTATGREA +L AELRGVFG AVA+ PSWETLPHERLSPGVDTVG RLM LRRLAH Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDDA+LGPPL VVVT+VRSLLQPMT QLG++EP+TL+VGDE F+ V+ARLVELAYTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MVGRRGEFAVRGGILDIF PTAEHPVRVEFWGDEITEMRMFSV DQRSIPEI + TLVA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 ACRELLLS+DV P E ++GS +D+LAKLAEGI VDGMEA+LPVL Sbjct: 241 ACRELLLSEDVRARAAQLAARH----PAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIG-ADNAAPVD 359 D +ALLTDQ TPVL+CDPEKVR +AADLI+T R FLEASWSVAA+G A+N APVD Sbjct: 297 WSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVD 356 Query: 360 VEQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFA 419 VEQL GSGFVEL V+AAA R+GHPWWTLSQLSDESA+ELD+RAAPS RGHQ ID IFA Sbjct: 357 VEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFA 416 Query: 420 MLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXX 479 MLRAH+ATGGYAA+V PGTGTAHRVVERL+ESD Sbjct: 417 MLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDG 476 Query: 480 XXXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIG 539 IPGANLV+ITE DLTGSR + EGKRLAAKRR+ DPLALTAGDLVVHDQHGIG Sbjct: 477 VI----IPGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIG 532 Query: 540 RFVEMVERTVGGARREYLVLEYASNKK---SKQADKLYVPMDSLDQLSRYVGGQAPALSR 596 RFVEMVERTVGGARREYLVLEYAS K+ +K DKLYVPMDSLDQLSRYVGGQAPALSR Sbjct: 533 RFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSR 592 Query: 597 LGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVD 656 LGGSDWANTKTKAR AVREIAGELVSLYAKRQASPGHAF PDTPWQAE+EDAFGFTETVD Sbjct: 593 LGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVD 652 Query: 657 QLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 716 QLTAI EVK DMEK +PMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQ Sbjct: 653 QLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 712 Query: 717 HLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLG 776 HL+TF ERM+GFPVT+KGLSRFTDAAESRAVIDGLA+GSVDIVIGTHRLLQTGV WKDLG Sbjct: 713 HLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLG 772 Query: 777 LVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 836 LVVVDEEQ FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY Sbjct: 773 LVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 832 Query: 837 PVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQ 896 PVLTYVGPHDDKQ+AAALRRELLRDGQAFYVHNRVSSI AAARV LVPEARVVVAHGQ Sbjct: 833 PVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQ 892 Query: 897 MPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVG 956 MPEDLLETT++ FWNRE+DILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVG Sbjct: 893 MPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVG 952 Query: 957 RSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQS 1016 RS ERGYAYFLYPPQ PLTE AYDRL TIAQNNELGAGMAVALKDLEIRGAGNVLG+EQS Sbjct: 953 RSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQS 1012 Query: 1017 GHVAGVGFDLYVRLVGEAVE----AYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIA 1072 GHVAGVGFDLYVRLVGEA+E AYRA ADG+T T EEPKDVRIDLPVDAHLPPDYIA Sbjct: 1013 GHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIA 1072 Query: 1073 SDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEV 1132 SDRLRLEGYRRLAAASSD EVAAVVDEL DRYGALPEPA+RL AVA+LRLLCRGSGI +V Sbjct: 1073 SDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDV 1132 Query: 1133 TAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRD 1192 TA SA+T+RLSP+ L DSAQVRLKRMYPGA YRAT ATVQVPIPRAG LG P IRD Sbjct: 1133 TAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGG----LGAPRIRD 1188 Query: 1193 VELVQAVADLITALQGLPRKVIGITGPEP 1221 VELVQ VADLITAL G PR+ IGIT P P Sbjct: 1189 VELVQMVADLITALAGKPRQHIGITNPSP 1217 >tr|Q741V0|Q741V0_MYCPA Tax_Id=1770 (mfd)SubName: Full=Mfd;[Mycobacterium paratuberculosis] Length = 1221 Score = 1918 bits (4969), Expect = 0.0 Identities = 999/1222 (81%), Positives = 1066/1222 (87%), Gaps = 15/1222 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MTAPG A +TPIAGLVELALTAPTF QL++ A PA+L L GPA RLFVASALARLG Sbjct: 1 MTAPGAARPETPIAGLVELALTAPTFQQLIDTAAASPADLSLVGPASTRLFVASALARLG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVVTATGREA +LTAELRGV G AVA+FPSWETLPHERLSPGVDTVGARL VLRRLAH Sbjct: 61 PLLVVTATGREADDLTAELRGVVGDAVAVFPSWETLPHERLSPGVDTVGARLTVLRRLAH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDDARLGPPLQVVVTAVRSLLQPMT QLGLVEPVTLSVG EI FE VIARLVELAY+RVD Sbjct: 121 PDDARLGPPLQVVVTAVRSLLQPMTPQLGLVEPVTLSVGQEIEFEHVIARLVELAYSRVD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MVGRRGEFAVRGGILD+F PTAEHPVRVEFWGDE++EMRMFSV DQRSIPEI VDT++++ Sbjct: 181 MVGRRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIAVDTVISV 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 CRELLL++DV P EPAI+GSV+D+LAK+A+GI VDGMEALLPVL Sbjct: 241 PCRELLLTEDVRARAAELAAQH----PASEPAITGSVSDMLAKIADGIAVDGMEALLPVL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGA-DNAAPVD 359 P LLTDQ A TPVLLCDPEK+R +AADLIKT R FLEASWSVAA+G +N AP+D Sbjct: 297 RPGKQVLLTDQLADRTPVLLCDPEKIRTRAADLIKTGREFLEASWSVAALGTLENQAPID 356 Query: 360 VEQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFA 419 VEQL GSGF EL +V+AAA+R GHPWWTLSQLSDESA+ELD+RAAPS RGHQH IDGIFA Sbjct: 357 VEQLGGSGFAELDEVRAAAVRGGHPWWTLSQLSDESAVELDVRAAPSARGHQHDIDGIFA 416 Query: 420 MLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXX 479 MLRAHV+TGG+AA+V PGTGTAHRVVERLAE D Sbjct: 417 MLRAHVSTGGHAAVVAPGTGTAHRVVERLAECDTPAAMLESGAAPRAGVVGVLKGPLHDG 476 Query: 480 XXXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIG 539 IPGANLV+ITE DLTGSR VEGKRLAAKRR+ DPLALTAGDLVVHDQHGIG Sbjct: 477 IV----IPGANLVVITETDLTGSRVAAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIG 532 Query: 540 RFVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGG 599 RFVEM ERTVGGARREYLVLEYAS+K+ +DKLYVPMDSLDQLSRYVGGQAPALS+LGG Sbjct: 533 RFVEMTERTVGGARREYLVLEYASSKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSKLGG 592 Query: 600 SDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLT 659 SDWANTKTKAR AVREIAGELVSLYAKRQASPGHAF PDTPWQAEMEDAFG+TETVDQLT Sbjct: 593 SDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAEMEDAFGYTETVDQLT 652 Query: 660 AITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLR 719 AITEVK DMEK +PMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQHL+ Sbjct: 653 AITEVKSDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQ 712 Query: 720 TFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVV 779 TFT+RMAGFPVTVKGLSRFTDAAESRAVI+GLA+GSVDIVIGTHRLLQTGV WKDLGLVV Sbjct: 713 TFTDRMAGFPVTVKGLSRFTDAAESRAVIEGLADGSVDIVIGTHRLLQTGVRWKDLGLVV 772 Query: 780 VDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVL 839 VDEEQ FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVL Sbjct: 773 VDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVL 832 Query: 840 TYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEAR--VVVAHGQM 897 TYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSI +AAARV LVPEAR VVVAHGQM Sbjct: 833 TYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDRAAARVRELVPEARVVVVVAHGQM 892 Query: 898 PEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGR 957 PE+ LE T++GFWNREYDILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVGR Sbjct: 893 PEERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGR 952 Query: 958 SHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSG 1017 S ERGYAYFLYPP APLTE AYDRL TIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSG Sbjct: 953 SRERGYAYFLYPPHAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSG 1012 Query: 1018 HVAGVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLR 1077 HVAGVGFDLYVRLVGEAVEAYRA ADG+T T EEPKDVRIDLPVDAHLPPDYIASDRLR Sbjct: 1013 HVAGVGFDLYVRLVGEAVEAYRAAADGQTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLR 1072 Query: 1078 LEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSA 1137 LE YRRLAAA SD E+ AVV+EL+DRYGALPEPA RLVAVA+LRLLCR +GI EV+APSA Sbjct: 1073 LEAYRRLAAAGSDDEIDAVVEELVDRYGALPEPALRLVAVARLRLLCRAAGITEVSAPSA 1132 Query: 1138 STMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQ 1197 +T+RLSPI L DSAQVRLKRMYP A YRAT +TVQVPIPRAG +G P +RDVELVQ Sbjct: 1133 ATVRLSPITLPDSAQVRLKRMYPAASYRATTSTVQVPIPRAGG----VGAPRLRDVELVQ 1188 Query: 1198 AVADLITALQGLPRKVIGITGP 1219 VA+L+TALQG P+ +G P Sbjct: 1189 MVANLVTALQGKPQTDVGTGTP 1210 >tr|B2HDI8|B2HDI8_MYCMM Tax_Id=216594 (mfd)SubName: Full=Transcription-repair coupling factor Mfd (TrcF);[Mycobacterium marinum] Length = 1222 Score = 1909 bits (4945), Expect = 0.0 Identities = 993/1217 (81%), Positives = 1060/1217 (87%), Gaps = 14/1217 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MTAPG A DTPIAGLV+LALTAPTF QL+ RA RP EL L GPA AR FVASALA+ G Sbjct: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVVTATGREA ++TAELRGVFG AVA+FPSWETLPHERLSPGVDTVGARL++LRRLAH Sbjct: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGARLLLLRRLAH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 P+D RLGPPL+VVVTAVRSLLQPMT QLG EPV+LSVG EIGF+ VIARLVELAYTRVD Sbjct: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MVGRRGEFAVRGGILD+F PTAEHPVRVEFWGDEITEMRMFSV DQRSIPEI V TLVA+ Sbjct: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 ACRELLL++DV P E ++GSV D+LAKLAEGIP DGMEALLPVL Sbjct: 241 ACRELLLTEDVRARAAALAAQH----PASENTVTGSVIDMLAKLAEGIPTDGMEALLPVL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV 360 PDD+ALLTDQ A TPVL+CDPEKVR +AADLIKT R FLEASWSVAA+G D APVDV Sbjct: 297 RPDDHALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTD--APVDV 354 Query: 361 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFAM 420 E L GSGF EL VQ AA SGHPWWTLSQLS+ESA EL++RAAPS RGHQ ID IFAM Sbjct: 355 EALGGSGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAM 414 Query: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXX 480 LRAHV+TGGYA +V PGTGTAHR+VERLAESDI Sbjct: 415 LRAHVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGV 474 Query: 481 XXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGR 540 +PGANLV++TE +LTG+RAT VEGKRLAAKRR+ DPLALTAGDLVVHDQHGIGR Sbjct: 475 I----VPGANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGR 530 Query: 541 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS 600 FVEMVERTVGGARREYLVLEYAS K+ +DKLYVPMDSLDQLSRYVGGQAPALSRLGGS Sbjct: 531 FVEMVERTVGGARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGS 590 Query: 601 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA 660 DW NTKTKAR AVREIAGELV+LYAKRQASPGHAF PDTPWQAEMEDAFGFTETVDQLTA Sbjct: 591 DWTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTA 650 Query: 661 ITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT 720 ITEVKGDMEKS+PMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQHL+T Sbjct: 651 ITEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQT 710 Query: 721 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV 780 FT+RMAGFPVTVKGLSRFTD AESR VI+G+A+GSVD+VIGTHRLLQTGV WKDLGLVVV Sbjct: 711 FTDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVV 770 Query: 781 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 840 DEEQ FGVEHKEHIKSLR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT Sbjct: 771 DEEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 830 Query: 841 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED 900 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSI AAR+ LVPEARVVVAHGQMPED Sbjct: 831 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPED 890 Query: 901 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE 960 LLE T++GFW RE+DILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVGRS E Sbjct: 891 LLERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRE 950 Query: 961 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1020 RGYAYFLYPPQAPLTE AYDRL TIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA Sbjct: 951 RGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1010 Query: 1021 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 GVGFDLYVRLVGEAVEAYRA ADGKT TPEEPKDVRIDLPVDAHLPPDYI SDRLRLE Sbjct: 1011 GVGFDLYVRLVGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEA 1070 Query: 1081 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM 1140 YRRLAAA+SD+ VAAVVDELIDRYGALPEPA RLVAVA+LRLLCR SGI +V+APS++T+ Sbjct: 1071 YRRLAAATSDSGVAAVVDELIDRYGALPEPALRLVAVARLRLLCRASGITDVSAPSSATV 1130 Query: 1141 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA 1200 RL+P+ L DSAQVRLKRMYPG YRAT +TVQVPIPR G +G P IRDVELVQ VA Sbjct: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGG----VGAPRIRDVELVQMVA 1186 Query: 1201 DLITALQGLPRKVIGIT 1217 +L+TAL G P++ IG T Sbjct: 1187 NLVTALAGKPQQDIGRT 1203 >tr|A0PW58|A0PW58_MYCUA Tax_Id=362242 (mfd)SubName: Full=Transcription-repair coupling factor Mfd (TrcF);[Mycobacterium ulcerans] Length = 1222 Score = 1894 bits (4907), Expect = 0.0 Identities = 986/1217 (81%), Positives = 1054/1217 (86%), Gaps = 14/1217 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MTAPG A DTPIAGLV+LALTAPTF QL+ RA RP EL L GPA AR FVASALA+ G Sbjct: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVVTATGREA ++TAELRGVFG AVA+FPSWETLPHERLSPGVDTVGARL++LRRLAH Sbjct: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGARLLLLRRLAH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDD RLGPPL+VVVTAVRSLLQPMT QLG EPV+LSVG EIGF+ VIARLVELAYTRVD Sbjct: 121 PDDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MVGRRGEFAVRGGILD+F PTAEHPVRVEFWGDEITEMRMFSV DQRSIPEI V TLVA+ Sbjct: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 ACRELLL++DV P E ++GSV D+LAKLAEGIP DGMEALLPVL Sbjct: 241 ACRELLLTEDVRARAAALAAQH----PASENTVTGSVIDMLAKLAEGIPTDGMEALLPVL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV 360 PDD+ALLTDQ A TPVL+CDPEKVR +AADLIKT R FLEASWSVAA+G D APVDV Sbjct: 297 RPDDHALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTD--APVDV 354 Query: 361 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFAM 420 E L GSGF EL VQ AA SGHPWWTLSQLS+ESA EL++RAAPS RGHQ ID IFAM Sbjct: 355 EALGGSGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAM 414 Query: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXX 480 LRAHV+TGGYA +V PGTGTAHR+VERLAESDI Sbjct: 415 LRAHVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGV 474 Query: 481 XXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGR 540 +PGANLV++TE +LTG+RAT VEGKRLAAKRR+ DPLALTAGDLVVHDQHGIGR Sbjct: 475 I----VPGANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGR 530 Query: 541 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS 600 FVEMVERTVGGARREYLVLEYAS ++ +DKLYVPMDSLDQLSRYVGGQAPALSRLGGS Sbjct: 531 FVEMVERTVGGARREYLVLEYASARRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGS 590 Query: 601 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA 660 DW NTKTKAR AVREIAGELV+LYAKRQASPGHAF PDTPWQAEMEDAFGFTETVDQLTA Sbjct: 591 DWTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTA 650 Query: 661 ITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT 720 ITEVK DMEKS+PMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQHL+T Sbjct: 651 ITEVKRDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQT 710 Query: 721 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV 780 FT+RMAGFPVTVKGLSRFTD AESR VI+G+A+GSVD+VIGTHRLLQTGV WKDLGLVVV Sbjct: 711 FTDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVV 770 Query: 781 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 840 DEEQ FGVEHKEHIKSLR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT Sbjct: 771 DEEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 830 Query: 841 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED 900 YVGPHDDKQVAAALRRELLRDGQAFYVHNR SSI AAR+ LVPEARVV AHGQMPED Sbjct: 831 YVGPHDDKQVAAALRRELLRDGQAFYVHNRASSIDDTAARIRKLVPEARVVAAHGQMPED 890 Query: 901 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE 960 LLE T++GFW RE+DILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVGRS E Sbjct: 891 LLERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRE 950 Query: 961 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1020 RGYAYFLYPPQAPLTE AYDRL TIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA Sbjct: 951 RGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1010 Query: 1021 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 GVGFDLY+RLVGEAVEAYRA ADGK TPEEPKDVRIDLPVDAHLPPDYI SDRLRLE Sbjct: 1011 GVGFDLYLRLVGEAVEAYRAAADGKMVTTPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEA 1070 Query: 1081 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM 1140 YRRLA A+SD+ VAAVVDELIDRYGALPEPA RLVAVA+LRLLCR SGI +V+APS++T+ Sbjct: 1071 YRRLATATSDSGVAAVVDELIDRYGALPEPALRLVAVARLRLLCRASGITDVSAPSSATV 1130 Query: 1141 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA 1200 RL+P+ L DSAQVRLKRMYPG YRAT +TVQVPIPR G +G P IRDVELVQ VA Sbjct: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGG----VGAPRIRDVELVQMVA 1186 Query: 1201 DLITALQGLPRKVIGIT 1217 +L+TAL G ++ IG T Sbjct: 1187 NLVTALAGKLQQDIGRT 1203 >tr|A0R3C5|A0R3C5_MYCS2 Tax_Id=246196 (mfd)SubName: Full=Transcription-repair coupling factor;[Mycobacterium smegmatis] Length = 1215 Score = 1778 bits (4604), Expect = 0.0 Identities = 919/1208 (76%), Positives = 1009/1208 (83%), Gaps = 13/1208 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MTAPG + TPIAGLVELAL+ P+ ++ RA RPA+L L GPA AR+ VA+ALA+ G Sbjct: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIRRAADRPADLALVGPASARVLVAAALAQNG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVV ATGREA LTAELRGVFG +VA+FPSWETLPHERLSPGV+TVGARLM+LRRLA Sbjct: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGARLMLLRRLAR 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDD LG PL+VVVT RSLLQPM L +EPVTLSVG E+ FE V+ARLV+L+YTRVD Sbjct: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ DQRSIPE+ V T+VA+ Sbjct: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 CRELL++DDV PT E + G+V D+LAKLAEGIPVDGMEALLP+L Sbjct: 241 PCRELLMTDDVRERAAALAAEH----PTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV 360 P + LT PVL+CDPEKVR +AADLIKT R FLEASWS AA+G D AP+D+ Sbjct: 297 HPIEPTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGD--APIDL 354 Query: 361 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFAM 420 E L SGFV + + AA GHPWWTLSQLSDESA+ELDIR+APS RG QH ++ IFAM Sbjct: 355 EALGASGFVTFEEAREAAREGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAM 414 Query: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXX 480 LRAHVATGGYAA+VTPG GTAHRVVE+L E+D Sbjct: 415 LRAHVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGV 474 Query: 481 XXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGR 540 +PGANLVIITE DLTG+R T EG++LAAKRR+ DPLALTAGDLVVHDQHGIG+ Sbjct: 475 V----LPGANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGK 530 Query: 541 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS 600 FVEM ER VGGARREYLVLEYAS+K+ DKLYVPMDSLDQLSRYVGG+AP+LSRLGGS Sbjct: 531 FVEMTERVVGGARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGS 590 Query: 601 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA 660 DWANTKTKAR AVREIA ELV+LYAKRQ++PGHAFGPDTPWQAEMEDAFGFTET+DQLTA Sbjct: 591 DWANTKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTA 650 Query: 661 ITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT 720 I EVK DMEK VPMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQHL+T Sbjct: 651 IQEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQT 710 Query: 721 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV 780 FT RMAGFPVTVKGLSRFTD AESRAVI+GL +GSVD+VIGTHRLLQTGV WKDLGL++V Sbjct: 711 FTNRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIV 770 Query: 781 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 840 DEEQ FGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT Sbjct: 771 DEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 830 Query: 841 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED 900 YVGPHDDKQVAAALRRELLRDGQAFY+HNRV +I +AAARV LVPEARVVVAHGQM E+ Sbjct: 831 YVGPHDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEE 890 Query: 901 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE 960 LE T+ GFWNREYDILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVGRS E Sbjct: 891 TLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRE 950 Query: 961 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1020 RGYAYFLYPP PLTE AYDRL TIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVA Sbjct: 951 RGYAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVA 1010 Query: 1021 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 GVGFDLYVRLVGEAVEAYRA ADGKT TP+E KDVRIDLPVDAHLPP+YI SDRLRLE Sbjct: 1011 GVGFDLYVRLVGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSDRLRLEA 1070 Query: 1081 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM 1140 YRRLAAA+ D VA+VVDELIDRYG LPEPAQRLVAVA+LRLLCR GI E+ A SAST+ Sbjct: 1071 YRRLAAAADDDAVASVVDELIDRYGPLPEPAQRLVAVARLRLLCREFGITEIGAVSASTV 1130 Query: 1141 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA 1200 RLSP+ L DSAQ+RLKRMYPG YRAT +TVQVP+PRAG +G P IRD+ELVQ VA Sbjct: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEG---VGAPRIRDLELVQWVA 1187 Query: 1201 DLITALQG 1208 L+ L G Sbjct: 1188 GLVLVLNG 1195 >tr|A1TEF0|A1TEF0_MYCVP Tax_Id=350058 SubName: Full=Transcription-repair coupling factor;[Mycobacterium vanbaalenii] Length = 1212 Score = 1771 bits (4588), Expect = 0.0 Identities = 914/1219 (74%), Positives = 1009/1219 (82%), Gaps = 15/1219 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MT G + TPIAGLV+LAL P ++ RAG RPA+L L GPA AR+FVASALA+ G Sbjct: 1 MTVSGTLHVHTPIAGLVDLALRDPALQEIARRAGDRPADLNLVGPASARVFVASALAQPG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 LLVVTATGREA +LTAELRGVFG AVA+FPSWETLPHERLSPGVDTVGAR+M+LRRL H Sbjct: 61 LLLVVTATGREADDLTAELRGVFGDAVALFPSWETLPHERLSPGVDTVGARMMLLRRLTH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDDARLGPPL++VVT RSLLQPM L V+PVTL+VG E F+ V+ARLV+LAY+RVD Sbjct: 121 PDDARLGPPLRIVVTTARSLLQPMAPDLAEVDPVTLTVGGEADFDAVVARLVDLAYSRVD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDE++EMRMFSV DQRSIPEI +DTL+A+ Sbjct: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIEIDTLIAV 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 CRELLL+ +V P E +++GSV D+LAKLAEGIPVDGMEALLP+L Sbjct: 241 PCRELLLTAEVRDRAAALASEH----PVLENSVTGSVPDMLAKLAEGIPVDGMEALLPLL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV 360 P D+A L D TP+L+CDPEKVR +AADLIKT R FLEASWS AA+G D P+D+ Sbjct: 297 RPSDFATLPDHLPEGTPLLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGD--VPIDI 354 Query: 361 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDES--ALELDIRAAPSTRGHQHAIDGIF 418 E L SG+V GD + AA GHPWWTLSQL + + LDIR APS RG QH +D IF Sbjct: 355 EALGVSGYVGYGDARDAARAGGHPWWTLSQLDSGAGESTALDIRPAPSARGQQHNLDEIF 414 Query: 419 AMLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXX 478 AMLRAHVATGG+ +VTPG+GTA RVVE+L+ESDI Sbjct: 415 AMLRAHVATGGFGVVVTPGSGTAMRVVEQLSESDIPATVLEPGAVPGEGVVGVIKGPLHD 474 Query: 479 XXXXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGI 538 IPGANLV+ITE DLTG+RA EGK+LAAKRR+ DPLALTAGDLVVHDQHGI Sbjct: 475 GVV----IPGANLVVITETDLTGNRAAATEGKKLAAKRRNVVDPLALTAGDLVVHDQHGI 530 Query: 539 GRFVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLG 598 GRFVEM ER +GGARREYLVLEYAS K+ +D+LYVPMDSLDQLSRYVGG+AP LSRLG Sbjct: 531 GRFVEMTERVIGGARREYLVLEYASAKRGGGSDRLYVPMDSLDQLSRYVGGEAPTLSRLG 590 Query: 599 GSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQL 658 GSDWANTKTKAR AVREIA ELV+LYAKRQAS GHAF PDTPWQ EMEDAFGFTETVDQL Sbjct: 591 GSDWANTKTKARKAVREIAAELVALYAKRQASAGHAFAPDTPWQREMEDAFGFTETVDQL 650 Query: 659 TAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 718 TAITEVK DMEK VPMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQHL Sbjct: 651 TAITEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 710 Query: 719 RTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLV 778 +TFT RM GFPVTVKGLSRFTD AESRA I+G+ +GSVDIVIGTHRLLQTGV WKDLGLV Sbjct: 711 QTFTNRMTGFPVTVKGLSRFTDPAESRATIEGMKDGSVDIVIGTHRLLQTGVTWKDLGLV 770 Query: 779 VVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 838 +VDEEQ FGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV Sbjct: 771 IVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 830 Query: 839 LTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMP 898 LTYVGPHDDKQVAAALRRE+LRDGQAFY+HNRV +I AAA+V LVPEARVVVAHGQMP Sbjct: 831 LTYVGPHDDKQVAAALRREMLRDGQAFYIHNRVRTIDSAAAKVRQLVPEARVVVAHGQMP 890 Query: 899 EDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRS 958 E+ LE T+ GFWNREYDILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVGRS Sbjct: 891 EEQLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRS 950 Query: 959 HERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGH 1018 ERGYAYFLYPP+ PLTE AYDRL TIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGH Sbjct: 951 RERGYAYFLYPPEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGH 1010 Query: 1019 VAGVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRL 1078 VAGVGFDLYVRLVGEAVEAYRA ADGKT PEEPKDVRIDLPVDAHLPPDYI SDRLRL Sbjct: 1011 VAGVGFDLYVRLVGEAVEAYRAAADGKTVAAPEEPKDVRIDLPVDAHLPPDYIGSDRLRL 1070 Query: 1079 EGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSAS 1138 E YRRLAAA D V AV++EL+DRYG LPEPAQRLVAVA+LRLL R G+ E+ APSA+ Sbjct: 1071 EAYRRLAAAPDDAAVDAVIEELVDRYGPLPEPAQRLVAVARLRLLARAHGVTEIGAPSAT 1130 Query: 1139 TMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQA 1198 T+R+SP+ L DSAQ+RLKR+Y GA YRAT +TVQVP+PRAGS +G P IRD+ELV Sbjct: 1131 TLRISPMTLPDSAQLRLKRLYSGANYRATTSTVQVPVPRAGSG---VGSPRIRDLELVAF 1187 Query: 1199 VADLITALQGLPRKVIGIT 1217 VA L+ A+ G P + + IT Sbjct: 1188 VAGLLLAIDGKPGEEVDIT 1206 >tr|A3Q5G2|A3Q5G2_MYCSJ Tax_Id=164757 SubName: Full=Transcription-repair coupling factor;[Mycobacterium sp.] Length = 1211 Score = 1769 bits (4583), Expect = 0.0 Identities = 909/1214 (74%), Positives = 1006/1214 (82%), Gaps = 13/1214 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MT G + TPIAGL+ELAL P L RA +P +L + GPA ARL V +ALA+ G Sbjct: 1 MTVSGLHHVQTPIAGLIELALRDPCLADLSARAADKPDDLAMVGPASARLLVTAALAQAG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVVTATGREA +LTAELRGV G + A+FPSWETLPHERLSPGVDTVGAR+M+LRRLAH Sbjct: 61 PLLVVTATGREADDLTAELRGVIGDSAALFPSWETLPHERLSPGVDTVGARMMLLRRLAH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDDARLGPPL+VVVT RSL+QPM L VEPVTL+VG E+ F+ VI RLV+LAYTR D Sbjct: 121 PDDARLGPPLRVVVTTARSLVQPMAPGLAEVEPVTLTVGAEMDFDGVIKRLVDLAYTRCD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MV +RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMRMF+V DQRSIPEI VDT++A+ Sbjct: 181 MVAKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRMFAVADQRSIPEIEVDTVIAV 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 CRELL+SD+V PT E ++ GSV D+LAKLAEGIPVDGMEALLP+L Sbjct: 241 PCRELLMSDEVRSRAAVLAAEH----PTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV 360 P D A+L+D P+L+CDPEKVR +A DLIKT R FLEASWS AA+G AAP+D+ Sbjct: 297 RPTDLAMLSDHLPDGAPILVCDPEKVRTRAGDLIKTGREFLEASWSTAAVGG--AAPIDL 354 Query: 361 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFAM 420 E + SGF+ +V+ A GHPWWTLSQLSDE A+ELDIR+APS RG Q +++ IFAM Sbjct: 355 EAMGASGFLGFEEVRTGARAGGHPWWTLSQLSDEKAIELDIRSAPSARGQQSSVEEIFAM 414 Query: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXX 480 LRAHVATGGY A+VTPG GTAHRVVE+L E+D Sbjct: 415 LRAHVATGGYGAVVTPGAGTAHRVVEQLGENDTPATMLEPGEEPKAGVVGVLKGPLHDGV 474 Query: 481 XXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGR 540 +PGANLVI+TEADLTGSR T EGKRLAAKRR+ DPLALTAGDLVVHDQHGIGR Sbjct: 475 V----LPGANLVIVTEADLTGSRVTATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGR 530 Query: 541 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS 600 FVEM ER VGGARREYLVLEYAS+K+ +D+LYVPMDSLDQLSRYVGG+AP+LS+LGGS Sbjct: 531 FVEMTERVVGGARREYLVLEYASSKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSKLGGS 590 Query: 601 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA 660 DWANTKTKAR AVREIA ELV+LYAKRQA+PGHAF PDTPWQ EMEDAFGFTETVDQLTA Sbjct: 591 DWANTKTKARRAVREIASELVALYAKRQAAPGHAFSPDTPWQNEMEDAFGFTETVDQLTA 650 Query: 661 ITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT 720 I EVK DMEK VPMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQHL+T Sbjct: 651 IEEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQT 710 Query: 721 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV 780 FT RMAGFPVTVKGLSRFTD AESRA ++G+ +GSVDIVIGTHRLLQTGV WKDLGL++V Sbjct: 711 FTARMAGFPVTVKGLSRFTDPAESRAALEGMKDGSVDIVIGTHRLLQTGVVWKDLGLIIV 770 Query: 781 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 840 DEEQ FGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT Sbjct: 771 DEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 830 Query: 841 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED 900 YVGP DDKQVAAALRRELLRDGQAFY+HNRV +I QAA+++ LVPEARVVVAHGQMPE+ Sbjct: 831 YVGPQDDKQVAAALRRELLRDGQAFYIHNRVRTIDQAASKIAALVPEARVVVAHGQMPEE 890 Query: 901 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE 960 LLE T+ GFWNREYDILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVGRS E Sbjct: 891 LLERTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRE 950 Query: 961 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1020 RGYAYFLYPP+ PLTE AYDRL TIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVA Sbjct: 951 RGYAYFLYPPEQPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVA 1010 Query: 1021 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 GVGFDLYVRLVGEAVEAYRA ADGKT TP+E KDVRIDLPVDA+LPPDYI SDRLRLE Sbjct: 1011 GVGFDLYVRLVGEAVEAYRAAADGKTVATPQETKDVRIDLPVDANLPPDYIGSDRLRLEA 1070 Query: 1081 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM 1140 YRRLAAA D V AV+DEL+DRYG LPEPAQRLV VA+LRL+CR GI +V++ SAST+ Sbjct: 1071 YRRLAAAQDDAGVDAVIDELVDRYGPLPEPAQRLVGVARLRLVCREYGITDVSSVSASTV 1130 Query: 1141 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA 1200 +LSP+ L DSAQ+RLKRMYPGA YRAT TV VPIPRA S +G P IRD ELV VA Sbjct: 1131 KLSPMELPDSAQLRLKRMYPGATYRATTGTVSVPIPRATDS---VGAPRIRDAELVAMVA 1187 Query: 1201 DLITALQGLPRKVI 1214 L+ AL G P+ I Sbjct: 1188 GLVLALNGKPQAQI 1201 >tr|Q1B434|Q1B434_MYCSS Tax_Id=164756 SubName: Full=Transcription-repair coupling factor;[Mycobacterium sp.] Length = 1211 Score = 1767 bits (4576), Expect = 0.0 Identities = 908/1214 (74%), Positives = 1005/1214 (82%), Gaps = 13/1214 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MT G + TPIAGL+ELAL P L RA +P +L + GPA ARL V +ALA+ G Sbjct: 1 MTVSGLHHVQTPIAGLIELALRDPCLADLSARAADKPDDLAMVGPASARLLVTAALAQAG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVVTATGREA +LTAELRGV G + A+FPSWETLPHERLSPGVDTVGAR+M+LRRLAH Sbjct: 61 PLLVVTATGREADDLTAELRGVIGDSAALFPSWETLPHERLSPGVDTVGARMMLLRRLAH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDDARLGPPL+VVVT RSL+QPM L VEPVTL+VG E+ F+ VI RLV+LAYTR D Sbjct: 121 PDDARLGPPLRVVVTTARSLVQPMAPGLAEVEPVTLTVGAEMDFDGVIKRLVDLAYTRCD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MV +RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMRMF+V DQRSIPEI VDT++A+ Sbjct: 181 MVAKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRMFAVADQRSIPEIEVDTVIAV 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 CRELL+SD+V PT E ++ GSV D+LAKLAEGIPVDGMEALLP+L Sbjct: 241 PCRELLMSDEVRSRAAVLAAEH----PTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV 360 P D A+L+D P+L+CDPEKVR +A DLIKT R FLEASWS AA+G AAP+D+ Sbjct: 297 RPTDLAMLSDHLPDGAPILVCDPEKVRTRAGDLIKTGREFLEASWSTAAVGG--AAPIDL 354 Query: 361 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFAM 420 E + SGF+ +V+ A GHPWWTLSQLSDE A+ELDIR+APS RG Q +++ IFAM Sbjct: 355 EAMGASGFLGFEEVRTGARAGGHPWWTLSQLSDEKAIELDIRSAPSARGQQSSVEEIFAM 414 Query: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXX 480 LRAHVATGGY A+VTPG GTAHRVVE+L E+D Sbjct: 415 LRAHVATGGYGAVVTPGAGTAHRVVEQLGENDTPATMLEPGEEPKAGVVGVLKGPLHDGV 474 Query: 481 XXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGR 540 +PGANLVI+TEADLTGSR T EGKRLAAKRR+ DPLALTAGDLVVHDQHGIGR Sbjct: 475 V----LPGANLVIVTEADLTGSRVTATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGR 530 Query: 541 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS 600 FVEM ER VGGARREYLVLEYAS+K+ +D+LYVPMDSLDQLSRYVGG+AP+LS+LGGS Sbjct: 531 FVEMTERVVGGARREYLVLEYASSKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSKLGGS 590 Query: 601 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA 660 DWANTKTKAR AVREIA ELV+LYAKRQA+PGHAF PDTPWQ EMEDAFGFTETVDQLTA Sbjct: 591 DWANTKTKARRAVREIASELVALYAKRQAAPGHAFSPDTPWQNEMEDAFGFTETVDQLTA 650 Query: 661 ITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT 720 I EVK DMEK VPMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQHL+T Sbjct: 651 IEEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQT 710 Query: 721 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV 780 FT RMAGFPVTVKGLSRFTD AESRA ++G+ +GSVDIVIGTHRLLQTGV WKDLGL++V Sbjct: 711 FTARMAGFPVTVKGLSRFTDPAESRAALEGMKDGSVDIVIGTHRLLQTGVVWKDLGLIIV 770 Query: 781 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 840 DEEQ FGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT Sbjct: 771 DEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 830 Query: 841 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED 900 YVGP DDKQVAAALRRELLRDGQAFY+HNRV +I QAA+++ LVPEARVVVAHGQMPE+ Sbjct: 831 YVGPQDDKQVAAALRRELLRDGQAFYIHNRVRTIDQAASKIAALVPEARVVVAHGQMPEE 890 Query: 901 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE 960 LLE T+ GFWNREYDILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVGRS E Sbjct: 891 LLERTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRE 950 Query: 961 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1020 RGYAYFLYPP+ PLTE AYDRL TIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVA Sbjct: 951 RGYAYFLYPPEQPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVA 1010 Query: 1021 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 GVGFDLYVRLVGEAVEAYRA ADGKT TP+E KDVRIDLPVDA+LPPDYI SDRLRLE Sbjct: 1011 GVGFDLYVRLVGEAVEAYRAAADGKTVATPQETKDVRIDLPVDANLPPDYIGSDRLRLEA 1070 Query: 1081 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM 1140 YRRLAAA D V AV+DEL+DRYG LPEPAQRLV VA+LRL+CR GI +V++ SAST+ Sbjct: 1071 YRRLAAAQDDAGVDAVIDELVDRYGPLPEPAQRLVGVARLRLVCREYGITDVSSVSASTV 1130 Query: 1141 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA 1200 +LSP+ L DSA +RLKRMYPGA YRAT TV VPIPRA S +G P IRD ELV VA Sbjct: 1131 KLSPMELPDSALLRLKRMYPGATYRATTGTVSVPIPRATDS---VGAPRIRDAELVAMVA 1187 Query: 1201 DLITALQGLPRKVI 1214 L+ AL G P+ I Sbjct: 1188 GLVLALNGKPQAQI 1201 >tr|A1UL14|A1UL14_MYCSK Tax_Id=189918 SubName: Full=Transcription-repair coupling factor;[Mycobacterium sp.] Length = 1211 Score = 1767 bits (4576), Expect = 0.0 Identities = 908/1214 (74%), Positives = 1005/1214 (82%), Gaps = 13/1214 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MT G + TPIAGL+ELAL P L RA +P +L + GPA ARL V +ALA+ G Sbjct: 1 MTVSGLHHVQTPIAGLIELALRDPCLADLSARAADKPDDLAMVGPASARLLVTAALAQAG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 PLLVVTATGREA +LTAELRGV G + A+FPSWETLPHERLSPGVDTVGAR+M+LRRLAH Sbjct: 61 PLLVVTATGREADDLTAELRGVIGDSAALFPSWETLPHERLSPGVDTVGARMMLLRRLAH 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDDARLGPPL+VVVT RSL+QPM L VEPVTL+VG E+ F+ VI RLV+LAYTR D Sbjct: 121 PDDARLGPPLRVVVTTARSLVQPMAPGLAEVEPVTLTVGAEMDFDGVIKRLVDLAYTRCD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MV +RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMRMF+V DQRSIPEI VDT++A+ Sbjct: 181 MVAKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRMFAVADQRSIPEIEVDTVIAV 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 CRELL+SD+V PT E ++ GSV D+LAKLAEGIPVDGMEALLP+L Sbjct: 241 PCRELLMSDEVRSRAAVLAAEH----PTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV 360 P D A+L+D P+L+CDPEKVR +A DLIKT R FLEASWS AA+G AAP+D+ Sbjct: 297 RPTDLAMLSDHLPDGAPILVCDPEKVRTRAGDLIKTGREFLEASWSTAAVGG--AAPIDL 354 Query: 361 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFAM 420 E + SGF+ +V+ A GHPWWTLSQLSDE A+ELDIR+APS RG Q +++ IFAM Sbjct: 355 EAMGASGFLGFEEVRTGARAGGHPWWTLSQLSDEKAIELDIRSAPSARGQQSSVEEIFAM 414 Query: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXX 480 LRAHVATGGY A+VTPG GTAHRVVE+L E+D Sbjct: 415 LRAHVATGGYGAVVTPGAGTAHRVVEQLGENDTPATMLEPGEEPKAGVVGVLKGPLHDGV 474 Query: 481 XXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGR 540 +PGANLVI+TEADLTGSR T EGKRLAAKRR+ DPLALTAGDLVVHDQHGIGR Sbjct: 475 V----LPGANLVIVTEADLTGSRVTATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGR 530 Query: 541 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS 600 FVEM ER VGGARREYLVLEYAS+K+ +D+LYVPMDSLDQLSRYVGG+AP+LS+LGGS Sbjct: 531 FVEMTERVVGGARREYLVLEYASSKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSKLGGS 590 Query: 601 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA 660 DWANTKTKAR AVREIA ELV+LYAKRQA+PGHAF PDTPWQ EMEDAFGFTETVDQLTA Sbjct: 591 DWANTKTKARRAVREIASELVALYAKRQAAPGHAFSPDTPWQNEMEDAFGFTETVDQLTA 650 Query: 661 ITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT 720 I EVK DMEK VPMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQHL+T Sbjct: 651 IEEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQT 710 Query: 721 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV 780 FT RMAGFPVTVKGLSRFTD AESRA ++G+ +GSVDIVIGTHRLLQTGV WKDLGL++V Sbjct: 711 FTARMAGFPVTVKGLSRFTDPAESRAALEGMKDGSVDIVIGTHRLLQTGVVWKDLGLIIV 770 Query: 781 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 840 DEEQ FGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT Sbjct: 771 DEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 830 Query: 841 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED 900 YVGP DDKQVAAALRRELLRDGQAFY+HNRV +I QAA+++ LVPEARVVVAHGQMPE+ Sbjct: 831 YVGPQDDKQVAAALRRELLRDGQAFYIHNRVRTIDQAASKIAALVPEARVVVAHGQMPEE 890 Query: 901 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE 960 LLE T+ GFWNREYDILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVGRS E Sbjct: 891 LLERTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRE 950 Query: 961 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1020 RGYAYFLYPP+ PLTE AYDRL TIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVA Sbjct: 951 RGYAYFLYPPEQPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVA 1010 Query: 1021 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 GVGFDLYVRLVGEAVEAYRA ADGKT TP+E KDVRIDLPVDA+LPPDYI SDRLRLE Sbjct: 1011 GVGFDLYVRLVGEAVEAYRAAADGKTVATPQETKDVRIDLPVDANLPPDYIGSDRLRLEA 1070 Query: 1081 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM 1140 YRRLAAA D V AV+DEL+DRYG LPEPAQRLV VA+LRL+CR GI +V++ SAST+ Sbjct: 1071 YRRLAAAQDDAGVDAVIDELVDRYGPLPEPAQRLVGVARLRLVCREYGITDVSSVSASTV 1130 Query: 1141 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA 1200 +LSP+ L DSA +RLKRMYPGA YRAT TV VPIPRA S +G P IRD ELV VA Sbjct: 1131 KLSPMELPDSALLRLKRMYPGATYRATTGTVSVPIPRATDS---VGAPRIRDAELVAMVA 1187 Query: 1201 DLITALQGLPRKVI 1214 L+ AL G P+ I Sbjct: 1188 GLVLALNGKPQAQI 1201 >tr|A4T6M5|A4T6M5_MYCGI Tax_Id=350054 SubName: Full=Transcription-repair coupling factor;[Mycobacterium gilvum] Length = 1198 Score = 1727 bits (4474), Expect = 0.0 Identities = 903/1210 (74%), Positives = 988/1210 (81%), Gaps = 18/1210 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MTA G + TPIAGLV LAL P+ ++ R RPA+L GPA ARLFVASALA+ G Sbjct: 1 MTASGTLHVHTPIAGLVGLALRDPSLQEIARRGVDRPADLHFVGPASARLFVASALAQAG 60 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 LLVVTATGREA +LTAELRGVFG AVAMFPSWETLPHERLSPGVDTVGAR+M+LRRLA Sbjct: 61 LLLVVTATGREADDLTAELRGVFGDAVAMFPSWETLPHERLSPGVDTVGARMMLLRRLAF 120 Query: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 PDDARLG PL+VVVT RSLLQPM L ++PVTL+VG E F+ +ARLV+LAYTRVD Sbjct: 121 PDDARLGEPLRVVVTTARSLLQPMAPDLARIDPVTLTVGGEADFDETVARLVDLAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMRMFSV DQRSIPEI +DT++A+ Sbjct: 181 MVGKRGEFAVRGGILDLFPPTAEHPVRVEFWGDEISEMRMFSVADQRSIPEIEIDTVIAV 240 Query: 241 ACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 CRELLL+ DV P E + GSV D+LA+LAEGIPVDGMEALLP+L Sbjct: 241 PCRELLLTADVRERAAALAEEH----PVSENNVPGSVPDMLARLAEGIPVDGMEALLPLL 296 Query: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV 360 P D+A L D TP+L+CDPEKVR +AADLIKT R FLEASWS AA+G D P+D+ Sbjct: 297 RPSDFATLPDHLPEGTPLLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGD--VPIDL 354 Query: 361 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDES--ALELDIRAAPSTRGHQHAIDGIF 418 E L SG+V + + AA GH WWTLSQL + + LDIR APS RG QH ++ IF Sbjct: 355 EALGASGYVTYNEARDAARDGGHGWWTLSQLDSGAGESTALDIRPAPSARG-QHNLEEIF 413 Query: 419 AMLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXX 478 AMLRAHVATGG +VTPG GT RVVE+L+ESD Sbjct: 414 AMLRAHVATGGCGVVVTPGAGTCQRVVEQLSESDTPAMILEPGMAPKDGVVGVLKGPLHD 473 Query: 479 XXXXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGI 538 IPGANLV+ITE DLTG+RA EGK+LAAKRR+ DPLALTAGDLVVHDQHGI Sbjct: 474 GVV----IPGANLVVITETDLTGNRAAATEGKKLAAKRRNVVDPLALTAGDLVVHDQHGI 529 Query: 539 GRFVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLG 598 GRFVEM ER +GGARREYLVLEYAS K+ AD+LYVPMDSLDQLSRYVGG+AP LSRLG Sbjct: 530 GRFVEMTERVIGGARREYLVLEYASAKRGGGADRLYVPMDSLDQLSRYVGGEAPTLSRLG 589 Query: 599 GSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQL 658 GSDWANTKTKAR AVREIA ELV+LYAKRQASPGHAF PDTPWQ EMEDAFGFTETVDQL Sbjct: 590 GSDWANTKTKARRAVREIAAELVTLYAKRQASPGHAFSPDTPWQVEMEDAFGFTETVDQL 649 Query: 659 TAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 718 TAITEVK DMEK VPMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQHL Sbjct: 650 TAITEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 709 Query: 719 RTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLV 778 +TFT RM GFPVTV+GLSRFTD A SRA ++G+ +GSVDIVIGTHRL+QTGV WKDLGLV Sbjct: 710 QTFTARMTGFPVTVRGLSRFTDPASSRATLEGMKDGSVDIVIGTHRLIQTGVTWKDLGLV 769 Query: 779 VVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 838 +VDEEQ FGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV Sbjct: 770 IVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 829 Query: 839 LTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMP 898 LTYVG HDDKQVAAALRRE+LRDGQAFY+HNRV +I AAA++ LVPEARVVVAHGQMP Sbjct: 830 LTYVGQHDDKQVAAALRREMLRDGQAFYIHNRVRTIDSAAAKIRQLVPEARVVVAHGQMP 889 Query: 899 EDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRS 958 E+ LE T+ GFWNREYDILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVGRS Sbjct: 890 EEQLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRS 949 Query: 959 HERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGH 1018 ERGYAYFLYPP+ PLTE AYDRL TIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGH Sbjct: 950 RERGYAYFLYPPEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGH 1009 Query: 1019 VAGVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRL 1078 VAGVGFDLYVRLVGEAVEAYRA ADGKT TPEEPKDVRIDLPVDAHLPPDYI SDRLRL Sbjct: 1010 VAGVGFDLYVRLVGEAVEAYRAAADGKTVATPEEPKDVRIDLPVDAHLPPDYIGSDRLRL 1069 Query: 1079 EGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTA--PS 1136 EGYRRLAAA D V AVV+EL+DRYG LPEPA+ LVAVA+LRLL R +GI EV A S Sbjct: 1070 EGYRRLAAAPDDAAVDAVVEELVDRYGPLPEPAELLVAVARLRLLARAAGITEVGAVSAS 1129 Query: 1137 ASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELV 1196 AST+R+SP+ L DSAQ+RLKR+Y GA YRAT +TVQVPIPRAG +G P IRD ELV Sbjct: 1130 ASTLRISPLTLPDSAQLRLKRLYSGANYRATTSTVQVPIPRAGQG---VGAPRIRDRELV 1186 Query: 1197 QAVADLITAL 1206 VA LI L Sbjct: 1187 DFVAGLIKVL 1196 >tr|B1MKF3|B1MKF3_MYCA9 Tax_Id=561007 SubName: Full=Probable transcription-repair coupling factor (TrcF);[Mycobacterium abscessus] Length = 1216 Score = 1626 bits (4210), Expect = 0.0 Identities = 852/1225 (69%), Positives = 968/1225 (79%), Gaps = 23/1225 (1%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MTA P P+AG++ AL P F L + L L P CAR FV + +A Sbjct: 1 MTATTP-----PLAGVIRTALRDPAFDVLAPAIAAKTG-LDLTAPTCARAFVVTGMADAS 54 Query: 61 --PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRL 118 P+LVVTAT REA +LTAELR V+G AV + PSWETLPHERLSPGVDTVGARL VL RL Sbjct: 55 DAPVLVVTATTREAQDLTAELRDVYGDAVTLLPSWETLPHERLSPGVDTVGARLQVLHRL 114 Query: 119 AHPDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTR 178 AHP+D+R+G PL+VV+T VRSLLQPM+ +L +EPV L+VG E+ F+ VIARLVELAYTR Sbjct: 115 AHPEDSRMGVPLRVVITTVRSLLQPMSPELFDLEPVELAVGAELEFDGVIARLVELAYTR 174 Query: 179 VDMVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLV 238 VDMV RGEFAVRGGILD+F PTA+HPVRVEFWGDE++EMR FSV DQRSIPE+ VD+++ Sbjct: 175 VDMVAGRGEFAVRGGILDVFSPTADHPVRVEFWGDEVSEMRYFSVADQRSIPELQVDSVL 234 Query: 239 AIACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLP 298 A+ CRELLL+D V E + V ++LAKLA+GI VDGME+LLP Sbjct: 235 AMPCRELLLTDQVRARAAELASAAGVSGSEEGHRLGAGVGEMLAKLADGICVDGMESLLP 294 Query: 299 VLCPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPV 358 VL +L D PVL+CDPEKVR +AADL +T R FLEASWSVAAIG+D AP+ Sbjct: 295 VLHSGKLTMLVDHLPDHAPVLVCDPEKVRTRAADLERTGREFLEASWSVAAIGSD--API 352 Query: 359 DVEQLYGSGFVELGDVQAAAIRSGHPWWTLSQLS--DESALELDIRAAPSTRGHQHAIDG 416 DVE L SGF EL DV+ AA +G+PWW+LS L ++ A+ L +R +PS RGH+ Sbjct: 353 DVEALADSGFRELDDVKHAAGEAGYPWWSLSPLGMDNDQAIGLAVRPSPSARGHKEGAAE 412 Query: 417 IFAMLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXX 476 IFAMLRAHV TGG AA+V G GT HR++E+LAE++ Sbjct: 413 IFAMLRAHVMTGGRAAVVAAGAGTTHRIIEQLAETETPATLLEPGAEPAEGVVGVLRGHL 472 Query: 477 XXXXXXXXXIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQH 536 + GAN+VI+TE DLTGSR +GKRL AKRR+ DPLAL+AGDLVVHDQH Sbjct: 473 TDGVV----LTGANIVIVTETDLTGSRVAATDGKRLPAKRRNQVDPLALSAGDLVVHDQH 528 Query: 537 GIGRFVEMVERTVGGARREYLVLEYASNKKSK----QADKLYVPMDSLDQLSRYVGGQAP 592 GIGRFVEMVERTVGGARREYLVLEYAS K+ Q+D+LYVPMDSLDQLSRYVGG++P Sbjct: 529 GIGRFVEMVERTVGGARREYLVLEYASGKRGAAAGGQSDRLYVPMDSLDQLSRYVGGESP 588 Query: 593 ALSRLGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFT 652 LSRLGGSDW NTKTKAR AVREIAGELV+LYA RQA+PGHAF PDTPWQ EMEDAFGF Sbjct: 589 GLSRLGGSDWTNTKTKARKAVREIAGELVALYAARQAAPGHAFAPDTPWQREMEDAFGFV 648 Query: 653 ETVDQLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTL 712 ETVDQLTAITEVK DMEK VPMDRV+CGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTL Sbjct: 649 ETVDQLTAITEVKSDMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTL 708 Query: 713 LADQHLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCW 772 LADQHL+TFT R AGFPV V GLSRFTD S+ V++G+A+GSVDIVIGTHRLLQTGV W Sbjct: 709 LADQHLQTFTNRTAGFPVKVAGLSRFTDPLTSKLVVEGMADGSVDIVIGTHRLLQTGVRW 768 Query: 773 KDLGLVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPP 832 KDLGLV+VDEEQ FGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPP Sbjct: 769 KDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPP 828 Query: 833 EERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVV 892 EERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVS+I +AAAR+ LVPEARVVV Sbjct: 829 EERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSTIDKAAARIRDLVPEARVVV 888 Query: 893 AHGQMPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLR 952 AHGQMPE++LE T++GFWNREYDILVCTTI+ETGLDI NANTL+VERAD FGLSQLHQLR Sbjct: 889 AHGQMPEEMLERTVQGFWNREYDILVCTTIIETGLDISNANTLIVERADIFGLSQLHQLR 948 Query: 953 GRVGRSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLG 1012 GRVGRS ERGYAYFLY P+ PLTE AYDRL TIAQNN+LGAGMAVA+KDLEIRGAGNVLG Sbjct: 949 GRVGRSRERGYAYFLYSPEVPLTETAYDRLSTIAQNNDLGAGMAVAMKDLEIRGAGNVLG 1008 Query: 1013 VEQSGHVAGVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIA 1072 VEQSGHVAGVGFDLYVRLVGEAVEAYRA ADGKT +T EEPK+VRIDLPVDAHLP DYI Sbjct: 1009 VEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKTVLTAEEPKEVRIDLPVDAHLPTDYIG 1068 Query: 1073 SDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEV 1132 SDRLRLE YRRLAAA+ ++ A V+EL DRYG LP P QRLVAVA LRLLCR GI ++ Sbjct: 1069 SDRLRLEAYRRLAAAADAAQINAAVEELADRYGPLPLPVQRLVAVASLRLLCREMGITDL 1128 Query: 1133 TAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRD 1192 + + +R+ P+ L+DSAQ+RLKR++P AQYRAT + VQVPIPRAG G +G IRD Sbjct: 1129 SV-VGTNIRIQPLPLLDSAQLRLKRLHPAAQYRATTSVVQVPIPRAGDGG--VGSDRIRD 1185 Query: 1193 VELVQAVADLITALQGLPRKVIGIT 1217 +ELV +A+L+ AL G P + IT Sbjct: 1186 LELVHMIAELLVALSGRPAGSVDIT 1210 >tr|Q0S4J8|Q0S4J8_RHOSR Tax_Id=101510 SubName: Full=Transcription repair coupling factor;[Rhodococcus sp.] Length = 1215 Score = 1534 bits (3971), Expect = 0.0 Identities = 795/1209 (65%), Positives = 933/1209 (77%), Gaps = 26/1209 (2%) Query: 10 DTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATG 69 DTP+AGL ++AL Q+ E G +++ GPA R FVA+ALA LL+VTATG Sbjct: 13 DTPLAGLAKIALGDAVIAQVTEALGRHHLDIVAPGPA--RPFVAAALAERTHLLLVTATG 70 Query: 70 REASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPP 129 REA +LTAELR + G AVA FPSWETLPHERLSP DTVG R+ VLRRLA PDD G P Sbjct: 71 READDLTAELREMIGDAVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDRSYGAP 130 Query: 130 LQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFA 189 LQV+VT VRSL+QPM LG +EPVTL VG E F+ +I RLVE+AYTRVDMVG+RGEFA Sbjct: 131 LQVIVTTVRSLVQPMAPGLGEIEPVTLRVGVEHDFDGLIQRLVEMAYTRVDMVGKRGEFA 190 Query: 190 VRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSD 249 VRGGILD+F PTA+HPVRVEFWGDE+TE+R FSV DQRS+PE+ +D ++A CRELLL++ Sbjct: 191 VRGGILDLFSPTADHPVRVEFWGDEVTELRAFSVADQRSLPELDIDAVIAPPCRELLLTE 250 Query: 250 DVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLT 309 DV + ++ ++L K++ GIPV+GMEALLPVL P LLT Sbjct: 251 DVRDRAAQLAV---------DNQADAALVEMLDKMSAGIPVEGMEALLPVLRPGQLQLLT 301 Query: 310 DQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSG-- 367 D VLLCDPEK+R +A DL++T + FLEASW+ A+IG AAP+D L G G Sbjct: 302 DVLPESAHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGG--AAPLDTSVLRGDGID 359 Query: 368 -----FVELGDVQAAAIRSGHPWWTLSQLSDESA--LELDIRAAPSTRGHQHAIDGIFAM 420 + L V+ +A G PWWTLS L+ + LEL + AP RG + +F Sbjct: 360 LGASAYRSLSQVRESAEARGLPWWTLSPLASGNGEELELAVTPAPQVRGSDDLLSELFVS 419 Query: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXX 480 LRAHV TGG A IV G GTAHRV+ERL E+++ Sbjct: 420 LRAHVTTGGRAVIVVAGAGTAHRVLERLREAEVPAAELAPGTEPPRGQVGVLRGSLHDGL 479 Query: 481 XXXXXIPGANLVIITEADLTGSRATPV-EGKRLAAKRRSAADPLALTAGDLVVHDQHGIG 539 A LVI+TEADLTG+R V +GKRL AKRR+ DPLALTAGD+VVHDQHGIG Sbjct: 480 VFPGDDSTAGLVIVTEADLTGNRVAAVGDGKRLPAKRRNQVDPLALTAGDMVVHDQHGIG 539 Query: 540 RFVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGG 599 RFVEMVERT+GGARREYLV+EYA++K+ D+L+VPM+SLDQLSRYVGG+ PALS+LGG Sbjct: 540 RFVEMVERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGG 599 Query: 600 SDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLT 659 SDWANTK KAR AVREIAGELV LYA RQA+PGHAFGPDTPWQ EMEDAF FTET DQLT Sbjct: 600 SDWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETHDQLT 659 Query: 660 AITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLR 719 I+EVK DMEK+VPMDRV+ GDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLA QHL+ Sbjct: 660 VISEVKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQ 719 Query: 720 TFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVV 779 TFTERMA FPVTV+GLSRFTDA +S+ I G+A+G +D+V+GTHRLLQTG+ WKDLGLV+ Sbjct: 720 TFTERMAAFPVTVRGLSRFTDAGDSKETIAGMADGEIDVVVGTHRLLQTGIRWKDLGLVI 779 Query: 780 VDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVL 839 VDEEQ FGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+P+L Sbjct: 780 VDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPIL 839 Query: 840 TYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPE 899 TYVG + DKQVAAA+RRELLRDGQ FYVHNRVSSI ++A R+ LVPEARVVVAHGQM E Sbjct: 840 TYVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKSAQRIRELVPEARVVVAHGQMNE 899 Query: 900 DLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSH 959 D LE T++GFW R+YD+LVCTTI+ETGLDI NANTL+VERAD+ GLSQLHQLRGRVGRS Sbjct: 900 DTLERTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSR 959 Query: 960 ERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHV 1019 ERGYAYFLYPP+ PLTE AYDRL TI+QN++LGAGMAVA+KDLEIRGAGNVLG EQSGHV Sbjct: 960 ERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHV 1019 Query: 1020 AGVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLE 1079 AGVGFDLYVRLVGEAVEA+RA ADG+ T + PK+VRIDLPVDAH+PPDY+ SDRLRLE Sbjct: 1020 AGVGFDLYVRLVGEAVEAFRAAADGRPITTEDAPKEVRIDLPVDAHIPPDYVTSDRLRLE 1079 Query: 1080 GYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSAST 1139 GYR+LAAA+ + AVVDEL DRYG LPE +RLV+VA+LRLL R G+ E+ A + Sbjct: 1080 GYRKLAAATELDGITAVVDELADRYGPLPEEVRRLVSVAKLRLLAREYGLEEI-AVVGTQ 1138 Query: 1140 MRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAV 1199 ++++P+ L DS Q+RLKR+YP AQYRAT VQ+P+PRAGS G +G +RDVEL+Q + Sbjct: 1139 LKIAPMALPDSKQLRLKRIYPSAQYRATTGMVQLPLPRAGSGG--IGAERVRDVELLQYI 1196 Query: 1200 ADLITALQG 1208 AD + AL G Sbjct: 1197 ADFVVALDG 1205 >tr|C1AY76|C1AY76_RHOOB Tax_Id=632772 (mfd)SubName: Full=Transcription-repair coupling factor;[Rhodococcus opacus] Length = 1215 Score = 1532 bits (3966), Expect = 0.0 Identities = 796/1209 (65%), Positives = 935/1209 (77%), Gaps = 26/1209 (2%) Query: 10 DTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATG 69 DTP+AGL ++AL Q+ E G R +++ PA AR FVA+ALA LL+VTATG Sbjct: 13 DTPLAGLAKIALGDAVVAQVTEALGRRHLDIV--APAPARPFVAAALAERTHLLLVTATG 70 Query: 70 REASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPP 129 REA +LTAEL+ + G AVA FPSWETLPHERLSP DTVG R+ VLRRLA PDD G P Sbjct: 71 READDLTAELQEMIGDAVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDRSYGAP 130 Query: 130 LQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFA 189 LQVVVT VRSL+QPM LG +EPVTL VG E F+ +I RLVE+AYTRVDMVG+RGEFA Sbjct: 131 LQVVVTTVRSLVQPMAPGLGEIEPVTLRVGVEHDFDGLIQRLVEMAYTRVDMVGKRGEFA 190 Query: 190 VRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSD 249 VRGGILD+F PTA+HPVRVEFWGDE+TE+R FSV DQRS+ E+ +D ++A CRELLL++ Sbjct: 191 VRGGILDLFSPTADHPVRVEFWGDEVTELRAFSVADQRSLAELDIDAVIAPPCRELLLTE 250 Query: 250 DVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLT 309 DV + ++ ++L K++ GIPV+GMEALLPVL P LLT Sbjct: 251 DVRDRAAQLAV---------DNQADAALVEMLDKMSAGIPVEGMEALLPVLRPGQLQLLT 301 Query: 310 DQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSG-- 367 D VLLCDPEK+R +A DL++T + FLEASW+ A+IG AAP+D L G G Sbjct: 302 DVLPESAHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGG--AAPLDTSVLKGDGID 359 Query: 368 -----FVELGDVQAAAIRSGHPWWTLSQLSDESA--LELDIRAAPSTRGHQHAIDGIFAM 420 + L V+ +A +G PWWTLS L+ S LEL I AP RG + +F Sbjct: 360 LGASAYRTLSQVRESAETAGLPWWTLSPLASGSGEELELAITPAPQVRGSDELLSELFVS 419 Query: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXX 480 LRAHV+TGG A IV G GTAHRV+ERL E+++ Sbjct: 420 LRAHVSTGGRAVIVVAGAGTAHRVLERLREAEVPAAELTPGSEPARGQVGVLRGSLHDGL 479 Query: 481 XXXXXIPGANLVIITEADLTGSRATPV-EGKRLAAKRRSAADPLALTAGDLVVHDQHGIG 539 LV++TE+DLTG+R V +G+RL AKRR+ DPLALTAGD+VVHDQHGIG Sbjct: 480 VFPGGDTTPGLVVVTESDLTGNRVAAVGDGRRLPAKRRNQVDPLALTAGDMVVHDQHGIG 539 Query: 540 RFVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGG 599 RFVEMVERT+GGARREYLV+EYA++K+ D+L+VPM+SLDQLSRYVGG+ PALS+LGG Sbjct: 540 RFVEMVERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGG 599 Query: 600 SDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLT 659 SDWANTK KAR AVREIAGELV LYA RQA+PGHAFGPDTPWQ EMEDAF FTET DQLT Sbjct: 600 SDWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETHDQLT 659 Query: 660 AITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLR 719 I+EVK DMEK+VPMDRV+ GDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLA QHL+ Sbjct: 660 VISEVKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQ 719 Query: 720 TFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVV 779 TFTERMA FPV V+GLSRFTDA ES+ ++ G+A+G +D+V+GTHRLLQT V WKDLGLV+ Sbjct: 720 TFTERMAAFPVKVRGLSRFTDAGESKEIVAGMADGEIDVVVGTHRLLQTAVRWKDLGLVI 779 Query: 780 VDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVL 839 VDEEQ FGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+P+L Sbjct: 780 VDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPIL 839 Query: 840 TYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPE 899 TYVG + DKQVAAA+RRELLRDGQ FYVHNRVSSI +AA R+ LVPEARVVVAHGQM E Sbjct: 840 TYVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAQRIRELVPEARVVVAHGQMNE 899 Query: 900 DLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSH 959 D LE T++GFW R+YD+LVCTTI+ETGLDI NANTL+VERAD+ GLSQLHQLRGRVGRS Sbjct: 900 DTLERTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSR 959 Query: 960 ERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHV 1019 ERGYAYFLYPP+ PLTE AYDRL TI+QN++LGAGMAVA+KDLEIRGAGNVLG EQSGHV Sbjct: 960 ERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHV 1019 Query: 1020 AGVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLE 1079 AGVGFDLYVRLVGEAVEA+RA ADGK T + PK+VRIDLPVDAH+PPDY+ SDRLRLE Sbjct: 1020 AGVGFDLYVRLVGEAVEAFRAAADGKPITTDDAPKEVRIDLPVDAHIPPDYVTSDRLRLE 1079 Query: 1080 GYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSAST 1139 GYR+LAAA+ + AVVDEL+DRYG LPE +RLV+VA+LRLL R G+ E+ A + Sbjct: 1080 GYRKLAAATELDGITAVVDELVDRYGPLPEEVRRLVSVAKLRLLAREYGLEEI-AVVGTQ 1138 Query: 1140 MRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAV 1199 +++SP+ L DS Q+RLKR+YP AQYRAT VQ+P+PRAGS G +G +RDVEL+Q + Sbjct: 1139 LKISPMALPDSKQLRLKRIYPSAQYRATTGMVQLPLPRAGSGG--IGAERVRDVELLQYI 1196 Query: 1200 ADLITALQG 1208 ADL+ AL G Sbjct: 1197 ADLVLALDG 1205 >tr|Q5YQ14|Q5YQ14_NOCFA Tax_Id=37329 (mfd)SubName: Full=Putative transcription-repair coupling factor;[Nocardia farcinica] Length = 1205 Score = 1527 bits (3954), Expect = 0.0 Identities = 799/1210 (66%), Positives = 938/1210 (77%), Gaps = 24/1210 (1%) Query: 12 PIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGRE 71 P+AGL +A + + GT +++ PA AR FVA+ +A P++VVTATGRE Sbjct: 7 PLAGLAAVAGADAALRTVADLVGTTTVDMV--APAAARSFVAATVAGKRPVVVVTATGRE 64 Query: 72 ASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPLQ 131 A +LT EL + G +VA FPSWETLPHERLSP DTVG RL VLRRLAHPDD PL+ Sbjct: 65 ADDLTVELTEILGDSVAQFPSWETLPHERLSPSADTVGRRLAVLRRLAHPDDPVFPVPLR 124 Query: 132 VVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVR 191 VVVT VRSL+QPM A LG +EP+ L G E+ F+ ++ RLVE AYTRVDMVG+RGEFAVR Sbjct: 125 VVVTTVRSLMQPMAAGLGDIEPIVLREGAELDFDDLLTRLVEFAYTRVDMVGKRGEFAVR 184 Query: 192 GGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDV 251 GGILD+F PTA+HPVRVEFWGDE+T++R F+V DQRS+PEI +DT+VA CRELLL+ V Sbjct: 185 GGILDLFPPTADHPVRVEFWGDEVTQVRAFAVADQRSLPEIEIDTVVATPCRELLLTAPV 244 Query: 252 XXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLTDQ 311 A ++ ++L KLAEGIPV+GMEALLPVL P + LLT+Q Sbjct: 245 RERAAQVAAAN---------AADAALVEMLDKLAEGIPVEGMEALLPVLQPGELTLLTEQ 295 Query: 312 FAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFVEL 371 AA T VLLCDPEK+R +AADL++T FLEASW+ A+ GAD + L S + L Sbjct: 296 LAAGTHVLLCDPEKIRTRAADLVRTGAEFLEASWTAASFGADAPLGGNGLDLAASSYRAL 355 Query: 372 GDVQAAAIRSGHPWWTLSQLS--DESALELDIRAAPSTRGHQHAIDGIFAMLRAHVATGG 429 ++ A R G WWTLS L+ D + + L + AP+ RG + IFA LRAHV TGG Sbjct: 356 PQIREDADRHGLAWWTLSPLASGDPAEVVLPLHQAPTARGSDELVATIFASLRAHVTTGG 415 Query: 430 YAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPGA 489 A +V G GTA RV+ERLA++++ A Sbjct: 416 RAVVVVAGHGTAQRVLERLADAEVPATALTAGAEPAPGVVGVLCGTLHDGVV----FADA 471 Query: 490 NLVIITEADLTGSRAT-PVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGRFVEMVERT 548 LV++ E+DLTG+R T P EGKRL AKRR+ DPLAL+AGD+VVHDQHGIGRFVEM+ERT Sbjct: 472 ALVVVAESDLTGNRVTAPGEGKRLPAKRRNQVDPLALSAGDMVVHDQHGIGRFVEMIERT 531 Query: 549 VGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTK 608 VGGARREYLV+EYA +K+ + D+L+VPM+SLDQLSRYVGG+ P+LS+LGGSDWANTK K Sbjct: 532 VGGARREYLVIEYAPSKRGQPGDRLFVPMESLDQLSRYVGGEMPSLSKLGGSDWANTKRK 591 Query: 609 ARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTAITEVKGDM 668 AR AVREIAGELV LYA RQA+PGHAFGPDTPWQ EMEDAF FTETVDQ+TAI EVK DM Sbjct: 592 ARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETVDQMTAIAEVKADM 651 Query: 669 EKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRTFTERMAGF 728 EK VPMDRV+CGDVGYGK EIAVRAAFKAVQDGKQV VLVPTTLLA QHL+TFTER+AGF Sbjct: 652 EKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHLQTFTERVAGF 711 Query: 729 PVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVVDEEQWFGV 788 PVTVKGLSRFTD AESRAV++G+A+GSVDIV+GTHRLLQTGV WKDLGLV+VDEEQ FGV Sbjct: 712 PVTVKGLSRFTDPAESRAVLEGMADGSVDIVVGTHRLLQTGVRWKDLGLVIVDEEQRFGV 771 Query: 789 EHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK 848 EHKEHIK+LRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER+PVLTYVG ++DK Sbjct: 772 EHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTYVGAYNDK 831 Query: 849 QVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPEDLLETTMRG 908 QV AA+RRELLRDGQ FYVHNRVSSI +AA R+ LVPEARVVVAHGQM ED LE T++G Sbjct: 832 QVTAAIRRELLRDGQVFYVHNRVSSIDKAAKRIRDLVPEARVVVAHGQMNEDTLERTVQG 891 Query: 909 FWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHERGYAYFLY 968 FW REYD+LVCTTI+ETGLDI NANTL+VERADT GLSQLHQLRGRVGRS ERGYAYFLY Sbjct: 892 FWQREYDVLVCTTIIETGLDISNANTLIVERADTLGLSQLHQLRGRVGRSRERGYAYFLY 951 Query: 969 PPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYV 1028 PP+ PLTE AYDRL TIAQN++LGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGFDLYV Sbjct: 952 PPEKPLTETAYDRLATIAQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYV 1011 Query: 1029 RLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAAS 1088 RLVGEAVEAYRA ADGK IT EE K+VRIDLPVDAH+PPDY+ASDRLRLE YR+LAAA Sbjct: 1012 RLVGEAVEAYRAAADGK-PITTEEVKEVRIDLPVDAHIPPDYVASDRLRLEAYRKLAAAQ 1070 Query: 1089 SDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTMRLSP-IRL 1147 D+ +A+VV+EL+DRYG LP RLV+VA+LRLL R GI E+ A + +T+++SP + L Sbjct: 1071 DDSALASVVEELVDRYGPLPVEVGRLVSVAKLRLLAREYGITEI-AVTGTTLKISPLLNL 1129 Query: 1148 IDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVADLITALQ 1207 DS Q+RLKR+YP A Y+A + VQ+P+PR S +G +RDV+L+Q VADL+ AL Sbjct: 1130 PDSKQLRLKRLYPSAGYKAASGVVQLPLPRVEDS---VGAERVRDVQLLQFVADLLLALD 1186 Query: 1208 GLPRKVIGIT 1217 G + + +T Sbjct: 1187 GKAQGAVDLT 1196 >tr|C1A324|C1A324_RHOE4 Tax_Id=234621 (mfd)SubName: Full=Transcription-repair coupling factor;[Rhodococcus erythropolis] Length = 1229 Score = 1509 bits (3908), Expect = 0.0 Identities = 779/1209 (64%), Positives = 934/1209 (77%), Gaps = 30/1209 (2%) Query: 11 TPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGR 70 T +AGL E+AL F +++ G +++ PA R F+A+ALA P+L+VTATGR Sbjct: 30 TALAGLAEVALADAAFTPVIDSIGAPALDIVAPKPA--RPFIAAALAARTPVLLVTATGR 87 Query: 71 EASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPL 130 EA +LT+EL + G VA FPSWETLPHERLSP DTVG R+ VLRRLA PDDA G PL Sbjct: 88 EADDLTSELTEMLGGGVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDASYGSPL 147 Query: 131 QVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAV 190 +V+VT VRSL+QPM LG +EP+TL VG EI F+ V+ RLVE+AY+RVDMVG+RGEFAV Sbjct: 148 RVIVTTVRSLVQPMAPGLGEIEPITLRVGTEIDFDSVLVRLVEMAYSRVDMVGKRGEFAV 207 Query: 191 RGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDD 250 RGGILD+F PTA+HPVR+EFWGDE++E+R FSV DQRS+P++ VD+++A CREL+L+ D Sbjct: 208 RGGILDLFSPTADHPVRIEFWGDEVSELRYFSVADQRSLPDVDVDSVIAPPCRELILTAD 267 Query: 251 VXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLTD 310 V E S+ ++L K++ GIPV+GMEALLPVL P + LL+D Sbjct: 268 VRDRAAAL---------AAENQADASLVEMLDKISAGIPVEGMEALLPVLKPGELQLLSD 318 Query: 311 QFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFVE 370 +LLCDPEKVR +A DL++T + FLEASW+ A+IG AAP+D L G G V+ Sbjct: 319 VLPVGAHILLCDPEKVRTRATDLVRTGQEFLEASWTAASIGG--AAPLDTSILNGGG-VD 375 Query: 371 LG--------DVQAAAIRSGHPWWTLSQLSDESA--LELDIRAAPSTRGHQHAIDGIFAM 420 LG V+ +A +G PWWT+S L+ + LE+ ++AAP RG + +F Sbjct: 376 LGASAYRSLRHVRESAEAAGRPWWTVSPLASGNGEELEIPVQAAPQVRGSDDLLAELFVS 435 Query: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXX 480 LRAHV+TGG AAIV G GTA RVVERL E+++ Sbjct: 436 LRAHVSTGGRAAIVVAGAGTASRVVERLGEAEVPAKMLEGGATPARGQVAVLRGSLHDGL 495 Query: 481 XXXXXIPGANLVIITEADLTGSRATPV-EGKRLAAKRRSAADPLALTAGDLVVHDQHGIG 539 +VI+TE+DLTG+R V +GKRL AKRR+ DPLAL+AGD+VVHDQHGIG Sbjct: 496 VLAGDDSTPGMVIVTESDLTGNRVAAVGDGKRLPAKRRNQVDPLALSAGDMVVHDQHGIG 555 Query: 540 RFVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGG 599 RFVEMVERT+GGARREYLV+EYA +K+ D+L+VPM+SLDQLSRYVGG+ PALS+LGG Sbjct: 556 RFVEMVERTIGGARREYLVIEYAPSKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGG 615 Query: 600 SDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLT 659 SDWANTK KAR AVREIAGELV LYA RQA+PGHAFGPDTPWQ E+EDAF FTET+DQLT Sbjct: 616 SDWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKELEDAFAFTETIDQLT 675 Query: 660 AITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLR 719 I+EVK DMEK VPMDRV+ GDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLA QHL+ Sbjct: 676 VISEVKADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQ 735 Query: 720 TFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVV 779 TFTERMA FPV V+GLSRFTDA +S+ +I G+AEG +DIV+GTHRLLQTG+ WKDLGLV+ Sbjct: 736 TFTERMASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDIVVGTHRLLQTGIRWKDLGLVI 795 Query: 780 VDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVL 839 VDEEQ FGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+P+L Sbjct: 796 VDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPIL 855 Query: 840 TYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPE 899 TYVG + DKQVAAA+RRELLRDGQ FYVHNRVSSI +AA ++ LVPEARVVVAHGQM E Sbjct: 856 TYVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKKIRELVPEARVVVAHGQMNE 915 Query: 900 DLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSH 959 D LE T++GFW R++D+LVCTTI+ETGLDI NANTL+VERAD+ GLSQLHQLRGRVGRS Sbjct: 916 DTLEKTVQGFWERDFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSR 975 Query: 960 ERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHV 1019 ERGYAYFLYP + PLTE AYDRL TI+QN++LGAGMAVA+KDLEIRGAGNVLG EQSGHV Sbjct: 976 ERGYAYFLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHV 1035 Query: 1020 AGVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLE 1079 AGVGFDLYVRLVGEAVEA+RA ADGK E K+VRIDLPVDAH+PPDY+ SDRLRLE Sbjct: 1036 AGVGFDLYVRLVGEAVEAFRAAADGKPITMDEGTKEVRIDLPVDAHIPPDYVTSDRLRLE 1095 Query: 1080 GYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSAST 1139 GYR+LAAA+ +AAVV+EL+DRYG LPE +RL++VA+LRLLCR + EV A + + Sbjct: 1096 GYRKLAAATDSDGIAAVVEELVDRYGPLPEEVRRLISVAKLRLLCREYQLEEV-AVTGTQ 1154 Query: 1140 MRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAV 1199 +++SP+ L DS Q+RLKR+YP AQYRAT VQ+P+PR G +G +RDVEL+Q + Sbjct: 1155 LKISPMSLPDSKQIRLKRIYPSAQYRATTGLVQLPLPRTGG----VGSDRLRDVELLQYI 1210 Query: 1200 ADLITALQG 1208 AD I A+ G Sbjct: 1211 ADFILAIDG 1219 >tr|C3JX01|C3JX01_RHOER Tax_Id=596309 (mfd)SubName: Full=Transcription-repair coupling factor; EC=3.6.1.-;[Rhodococcus erythropolis SK121] Length = 1208 Score = 1509 bits (3907), Expect = 0.0 Identities = 782/1209 (64%), Positives = 933/1209 (77%), Gaps = 30/1209 (2%) Query: 11 TPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGR 70 T +AGL E+AL F ++E G+ A L + P AR F+A+ALA P+L+VTATGR Sbjct: 9 TALAGLAEVALADAAFTPVIESIGS--AALDIVAPKPARPFIAAALAARTPVLLVTATGR 66 Query: 71 EASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPL 130 EA +LT+EL + G VA FPSWETLPHERLSP DTVG R+ VLRRLA PDDA G PL Sbjct: 67 EADDLTSELTEMLGGGVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDASYGSPL 126 Query: 131 QVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAV 190 +V+VT VRSL+QPM LG +EP+TL VG EI F+ V+ RLVE+AY+RVDMVG+RGEFAV Sbjct: 127 RVIVTTVRSLVQPMAPGLGEIEPITLRVGTEIDFDSVLVRLVEMAYSRVDMVGKRGEFAV 186 Query: 191 RGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDD 250 RGGILD+F PTA+HPVR+EFWGDE++E+R FSV DQRS+ ++ VD+++A CREL+L+ D Sbjct: 187 RGGILDLFSPTADHPVRIEFWGDEVSELRYFSVADQRSLADVDVDSVIAPPCRELILTAD 246 Query: 251 VXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLTD 310 V E S+ ++L K++ GIPV+GMEALLPVL P + LL+D Sbjct: 247 VRDRAAAL---------AAENQADASLVEMLDKISAGIPVEGMEALLPVLKPGELQLLSD 297 Query: 311 QFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFVE 370 +LLCDPEKVR +A DL++T + FLEASW+ A+IG AAP+D L G G V+ Sbjct: 298 VLPEGAHILLCDPEKVRTRATDLVRTGQEFLEASWTAASIGG--AAPLDTSILNGGG-VD 354 Query: 371 LG--------DVQAAAIRSGHPWWTLSQLSDESA--LELDIRAAPSTRGHQHAIDGIFAM 420 LG V+ +A +G PWWT+S L+ + LEL + AAP RG + +F Sbjct: 355 LGASAYRSLRHVRESAEAAGRPWWTVSPLASGNGEELELPVHAAPQVRGSDDLLAELFVS 414 Query: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXX 480 LRAHV+TGG AAIV G GTA RVVERL E+++ Sbjct: 415 LRAHVSTGGRAAIVVAGAGTASRVVERLGEAEVPAKMLDAGATPARGQVAVLRGSLHDGL 474 Query: 481 XXXXXIPGANLVIITEADLTGSRATPV-EGKRLAAKRRSAADPLALTAGDLVVHDQHGIG 539 +VI+TE+DLTG+R V +GKRL AKRR+ DPLAL+AGD+VVHDQHGIG Sbjct: 475 VLAGDDSTPGMVIVTESDLTGNRVAAVGDGKRLPAKRRNQVDPLALSAGDMVVHDQHGIG 534 Query: 540 RFVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGG 599 RFVEMVERT+GGARREYLV+EYA +K+ D+L+VPM+SLDQLSRYVGG+ PALS+LGG Sbjct: 535 RFVEMVERTIGGARREYLVIEYAPSKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGG 594 Query: 600 SDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLT 659 SDWANTK KAR AVREIAGELV LYA RQA+PGHAFGPDTPWQ E+EDAF FTET+DQLT Sbjct: 595 SDWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKELEDAFAFTETIDQLT 654 Query: 660 AITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLR 719 I+EVK DMEK VPMDRV+ GDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLA QHL+ Sbjct: 655 VISEVKADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQ 714 Query: 720 TFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVV 779 TFTERMA FPV V+GLSRFTDA +S+ +I G+AEG +DIV+GTHRLLQTG+ WKDLGLV+ Sbjct: 715 TFTERMASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDIVVGTHRLLQTGIRWKDLGLVI 774 Query: 780 VDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVL 839 VDEEQ FGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+P+L Sbjct: 775 VDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPIL 834 Query: 840 TYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPE 899 TYVG + DKQVAAA+RRELLRDGQ FYVHNRVSSI +AA ++ LVPEARVVVAHGQM E Sbjct: 835 TYVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKKIRELVPEARVVVAHGQMNE 894 Query: 900 DLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSH 959 D LE T++GFW R++D+LVCTTI+ETGLDI NANTL+VERAD+ GLSQLHQLRGRVGRS Sbjct: 895 DTLEKTVQGFWERDFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSR 954 Query: 960 ERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHV 1019 ERGYAYFLYP + PLTE AYDRL TI+QN++LGAGMAVA+KDLEIRGAGNVLG EQSGHV Sbjct: 955 ERGYAYFLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHV 1014 Query: 1020 AGVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLE 1079 AGVGFDLYVRLVGEAVEA+RA ADGK E K+VRIDLPVDAH+PPDY+ SDRLRLE Sbjct: 1015 AGVGFDLYVRLVGEAVEAFRAAADGKPITMDEGTKEVRIDLPVDAHIPPDYVTSDRLRLE 1074 Query: 1080 GYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSAST 1139 GYR+LAAA+ +AAVV+EL+DRYG LPE +RL++VA+LRLLCR + EV A + + Sbjct: 1075 GYRKLAAATDSDGIAAVVEELVDRYGPLPEEVRRLISVAKLRLLCREYQLEEV-AVTGTQ 1133 Query: 1140 MRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAV 1199 +++SP+ L DS Q+RLKR+YP AQYRAT VQ+P+PR G +G +RDVEL+Q + Sbjct: 1134 LKISPMSLPDSKQIRLKRIYPSAQYRATTGLVQLPLPRTGG----VGSDRLRDVELLQYI 1189 Query: 1200 ADLITALQG 1208 AD I A+ G Sbjct: 1190 ADFILAIDG 1198 >tr|D0L750|D0L750_9ACTO Tax_Id=526226 SubName: Full=Transcription-repair coupling factor;[Gordonia bronchialis DSM 43247] Length = 1195 Score = 1399 bits (3622), Expect = 0.0 Identities = 759/1215 (62%), Positives = 885/1215 (72%), Gaps = 50/1215 (4%) Query: 7 ACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG--PLLV 64 AC DT I+G+ RA + L P AR FV + LA+ PLLV Sbjct: 14 ACADTAISGI---------------RARRDEVHVDLTAPDAARPFVVACLAKDADAPLLV 58 Query: 65 VTATGREASNLTAELRGVFGA--AVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPD 122 V+A GREA +LTAEL + AVA FPSWETLPHERLSP DTVGARL VL RLA+P Sbjct: 59 VSANGREADDLTAELAELLDEPDAVAQFPSWETLPHERLSPSADTVGARLAVLHRLANPG 118 Query: 123 DARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMV 182 D+ PL+VVVT VRSL+QPM LG V ++L+ G EI F+ ++ LVE+AY RVDMV Sbjct: 119 DS----PLRVVVTTVRSLVQPMAPGLGDVATISLAEGFEIDFDGLLTDLVEMAYERVDMV 174 Query: 183 GRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIAC 242 GRRGEFAVRGGILD+F TA++PVRVEFWGDEITEMR FSV DQRS PE+ + C Sbjct: 175 GRRGEFAVRGGILDVFPTTADYPVRVEFWGDEITEMRAFSVADQRSQPEVEATRVDIHPC 234 Query: 243 RELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCP 302 RELLL+D++ PT + ++L KLAEGIPV+GMEAL+P L Sbjct: 235 RELLLTDEIRTRAAELASQFEGD-PT--------LAEMLTKLAEGIPVNGMEALIPALVD 285 Query: 303 DDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQ 362 LLT+ A T VL+ DPEKVR +AADL KT FLEASW+ AA+GA Q Sbjct: 286 GRMQLLTEVVPAGTRVLILDPEKVRTRAADLSKTGAEFLEASWTAAAMGAQGPLDGRSSQ 345 Query: 363 LYG-----SGFVELGDVQAAAIRSGHPWWTLSQLS--DESALELDIRAAPSTRGHQHAID 415 G S + L +V+ + +G WWT+S L+ D+ + LD+ P+ RG + I Sbjct: 346 ALGVDLQASAYRPLDEVRETTLAAGRSWWTISPLATGDDHEVVLDLAPGPAPRGDDNEIV 405 Query: 416 GIFAMLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXX 475 +FA LRAHV G AAIV G GTA RV ERLA++++ Sbjct: 406 AVFAQLRAHVRAGQTAAIVVAGKGTAQRVGERLADAEVPHVIAEPGHRPAPGEVSVFGGT 465 Query: 476 XXXXXXXXXXIPGANLVIITEADLTGSRATPV-EGKRLAAKRRSAADPLALTAGDLVVHD 534 P A LVI+TEADLTG+R V +G++L AKRR+ DPLALTAGDLVVHD Sbjct: 466 LRHGLVC----PDAGLVIVTEADLTGTRVANVRDGRKLPAKRRNQVDPLALTAGDLVVHD 521 Query: 535 QHGIGRFVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPAL 594 QHGIG+FVEM+ERTV GARREYLVLEYA +K+ + D+LYVPMD+LDQLSRYVGG+ P+L Sbjct: 522 QHGIGKFVEMIERTVSGARREYLVLEYAPSKRGQPGDRLYVPMDALDQLSRYVGGEQPSL 581 Query: 595 SRLGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTET 654 S+LGGSDW NTK KAR AVREIAGELV LYA R A+PGHAFGPDTPWQ EMEDAF FTET Sbjct: 582 SKLGGSDWQNTKRKARKAVREIAGELVQLYAARHAAPGHAFGPDTPWQQEMEDAFDFTET 641 Query: 655 VDQLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLA 714 VDQ+T I EVK DME+ VPMDRVI GDVGYGK EIAVRAAFKAVQDGKQVAVLVPTT+LA Sbjct: 642 VDQMTVIGEVKADMERPVPMDRVIVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTILA 701 Query: 715 DQHLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKD 774 QHL+TF+ERM+GFPV V+GLSRFTDA ESR +ID +A G VDIVIGTHRLLQTGV WKD Sbjct: 702 QQHLQTFSERMSGFPVRVRGLSRFTDARESREIIDAMATGEVDIVIGTHRLLQTGVTWKD 761 Query: 775 LGLVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEE 834 LGLV+VDEEQ FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEE Sbjct: 762 LGLVIVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEE 821 Query: 835 RYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAH 894 R+PVLTYVG + KQVAAA+RRELLRDGQ FYVHNRVS+I + A + +VPEARVVVAH Sbjct: 822 RHPVLTYVGAYAPKQVAAAIRRELLRDGQVFYVHNRVSTIDKTARDIAAMVPEARVVVAH 881 Query: 895 GQMPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGR 954 GQM ED LE T+ GFWNRE+D+LVCTTI+ETGLDI NANTL+V+RA+ GLSQLHQLRGR Sbjct: 882 GQMNEDQLEKTVSGFWNREFDVLVCTTIIETGLDISNANTLIVDRAENLGLSQLHQLRGR 941 Query: 955 VGRSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVE 1014 VGRS ERGYAY LY P+ PLTE AYDRL TIAQNNELGAGMAVALKDLE+RGAGNVLG E Sbjct: 942 VGRSRERGYAYLLYSPERPLTETAYDRLATIAQNNELGAGMAVALKDLELRGAGNVLGAE 1001 Query: 1015 QSGHVAGVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASD 1074 QSGHVAGVGFDLYVRLVGEAVEAYRA ADG+ +T E ++VRIDLPVDAH+P +Y+ SD Sbjct: 1002 QSGHVAGVGFDLYVRLVGEAVEAYRAAADGQ-PVTSRETEEVRIDLPVDAHIPVEYVDSD 1060 Query: 1075 RLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTA 1134 RLRLE YR+LA+A D V V+ EL DRYG P RL A+A+LRL CR GI E+ Sbjct: 1061 RLRLEAYRKLASAIDDAAVDGVIAELTDRYGEPPVETTRLAAIARLRLRCRERGITEI-G 1119 Query: 1135 PSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVE 1194 + + +++SP+ L+DS QVRLKR+Y A YRAT + V +PIPR G G +RD E Sbjct: 1120 LAGTGLKISPLPLLDSEQVRLKRLYSAANYRATTSVVTLPIPRTGGVGSAR----LRDDE 1175 Query: 1195 LVQAVADLITALQGL 1209 L+ + +T L+ L Sbjct: 1176 LIVYLTTFLTQLKPL 1190 >tr|C6WJJ6|C6WJJ6_ACTMD Tax_Id=446462 SubName: Full=Transcription-repair coupling factor;[Actinosynnema mirum] Length = 1187 Score = 1362 bits (3525), Expect = 0.0 Identities = 734/1224 (59%), Positives = 879/1224 (71%), Gaps = 46/1224 (3%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 M+ PGP ++GL+ L L + AG+ EL L GP AR VA+AL+R Sbjct: 1 MSQPGP------LSGLLTAVLPDKALRALADAAGS--PELELEGPPAARPLVAAALSRTS 52 Query: 61 PLLVVTATGREASNLTAELRGVFGA-AVAMFPSWETLPHERLSPGVDTVGARLMVLRRLA 119 P+L VTATGREA L + LR + G AVA+FPSWETLPHERLSP DTVGARL VLRRLA Sbjct: 53 PVLAVTATGREAEELASVLRDLVGPEAVAIFPSWETLPHERLSPRADTVGARLQVLRRLA 112 Query: 120 HPDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRV 179 HP D PL+ VV VRSL+QPM LG +EP+ L+ G E F+ ++ RL ELAYTRV Sbjct: 113 HPGDR----PLRAVVATVRSLIQPMAPGLGDLEPLDLATGSEHDFDALLHRLAELAYTRV 168 Query: 180 DMVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVA 239 DMV +RGEFAVRGGILD+F PTAEHP+RVEFWGDE+TE+R FSV DQRS+P+ VD A Sbjct: 169 DMVEKRGEFAVRGGILDVFPPTAEHPLRVEFWGDEVTEIRPFSVADQRSLPK-QVDAFTA 227 Query: 240 IACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPV 299 CRELLL++ V E + ++L KLAEGIP +GMEAL+P Sbjct: 228 PPCRELLLTERVRARAQEL---------AAEHEADAQLAEMLTKLAEGIPSEGMEALIPA 278 Query: 300 LCPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVD 359 LC + LLTD T VL+ DPEK+R +A DL++T + FLEASW AA G AP+D Sbjct: 279 LCDGELQLLTDLVPDGTHVLVNDPEKIRARARDLVRTGQEFLEASWMAAAGGGK--APID 336 Query: 360 VEQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESA--LELDIRAAPSTRGHQHAIDGI 417 L S + L +V AA + PWWTLSQL+ E + L L+ + +Q +D Sbjct: 337 ---LGASAYRSLDEVADAARAADKPWWTLSQLTTEGSDVLRLEFK---HVHAYQGDVDRA 390 Query: 418 FAMLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXX 477 FA LRAH A GG A +V PGTGTA R E+L E+ + Sbjct: 391 FADLRAHTAAGGTAVLVVPGTGTAQRATEQLREAQVGAVCVDSLDEPPRTGAVTVVRGAL 450 Query: 478 XXXXXXXXIPGANLVIITEADLTGSRA--TPVEGKRLAAKRRSAADPLALTAGDLVVHDQ 535 +P LV++TE DLTG R + + +R+ ++RR+A DPLAL GD VVH+Q Sbjct: 451 EDGFA---LPELALVVLTETDLTGGRGGTSTKDMRRMPSRRRNAVDPLALRTGDYVVHEQ 507 Query: 536 HGIGRFVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALS 595 HGIGR+VEMV+RTV GA REYLVLEYAS+K+ + D+L+VP D LD++SRYVGG+ P L+ Sbjct: 508 HGIGRYVEMVQRTVAGATREYLVLEYASSKRGQPGDRLFVPTDQLDEVSRYVGGELPTLN 567 Query: 596 RLGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETV 655 +LGGSDW NTK KA+ AV++IA ELV LYA RQ++PGHAF PDTPWQ E+EDAF FTETV Sbjct: 568 KLGGSDWKNTKAKAKKAVKQIAAELVQLYAARQSAPGHAFAPDTPWQRELEDAFPFTETV 627 Query: 656 DQLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLAD 715 DQ+ AI EVK DME+ VPMDRVICGDVGYGK EIAVRAAFKAVQDGKQV VLVPTTLLA Sbjct: 628 DQMAAIDEVKADMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQ 687 Query: 716 QHLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDL 775 QHL TFTERM FPV V+GLSRFTD E+ GLAEG VD+VIGTHRLLQ G+ +KDL Sbjct: 688 QHLNTFTERMRAFPVVVRGLSRFTDPTEAEQTTTGLAEGDVDVVIGTHRLLQKGLRYKDL 747 Query: 776 GLVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER 835 GLV+VDEEQ FGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER Sbjct: 748 GLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER 807 Query: 836 YPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHG 895 +P+LTYVG + DKQV AA+RRELLRDGQ FYVHNRVSSI +AA R+ L PEARVV AHG Sbjct: 808 HPILTYVGGYADKQVGAAIRRELLRDGQVFYVHNRVSSIEKAARRIRELAPEARVVTAHG 867 Query: 896 QMPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRV 955 QM ED LE ++GFW REYD+LV TTIVETGLDI NANTL+VER D GLSQLHQLRGRV Sbjct: 868 QMNEDKLEKIIQGFWEREYDVLVSTTIVETGLDISNANTLIVERGDLLGLSQLHQLRGRV 927 Query: 956 GRSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQ 1015 GR ERGYAYFLYPP++PL+E A+DRL TIAQN ELGAGMAVA+KDLEIRGAGN+LG EQ Sbjct: 928 GRGRERGYAYFLYPPESPLSETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNILGAEQ 987 Query: 1016 SGHVAGVGFDLYVRLVGEAVEAYR--AVADGKTAITPEEPKDVRIDLPVDAHLPPDYIAS 1073 SGH+AGVGFDLYVRLVGEAVEA+R A ADG+ + EP +VR++LPVDAH+P DY+ Sbjct: 988 SGHIAGVGFDLYVRLVGEAVEAFRRSAGADGELEV---EPAEVRVELPVDAHIPHDYVPG 1044 Query: 1074 DRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVT 1133 +RLRLE YR++AAA + + AV DEL DRYGA P P +RL+ VA+LR CR G+ EV Sbjct: 1045 ERLRLEAYRKIAAAVDEAGLTAVRDELKDRYGAPPLPVERLLDVARLRHTCRAHGVTEV- 1103 Query: 1134 APSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDV 1193 A S++R +P+ L DS VRL+R++P A Y+ +T+ P P G++GG +G P +RD Sbjct: 1104 ALQGSSIRFAPLELKDSQVVRLRRLHPKAVYKQAVSTITTPRPTEGAAGGRMGAPPLRDQ 1163 Query: 1194 ELVQAVADLITALQGLPRKVIGIT 1217 EL+ A + +L G P V G+T Sbjct: 1164 ELLAWCAHFLESLAGAP--VSGVT 1185 >tr|A4F7Z2|A4F7Z2_SACEN Tax_Id=405948 (mfd)SubName: Full=Transcription-repair coupling factor;[Saccharopolyspora erythraea] Length = 1195 Score = 1359 bits (3518), Expect = 0.0 Identities = 725/1212 (59%), Positives = 877/1212 (72%), Gaps = 33/1212 (2%) Query: 12 PIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG-PLLVVTATGR 70 P+ GL+E L Q++E A RP L+L GPA AR A+ALA P+L+VTATGR Sbjct: 6 PLRGLLETMLRDSAVRQVVE-AVDRP-RLVLEGPAAARPLAAAALAAADRPVLLVTATGR 63 Query: 71 EASNLTAELRGVFGA-AVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPP 129 EA + A + + G+ V +FPSWETLPHERLSP DTVG RL VLRRLAHP++ G Sbjct: 64 EAEEVAAAVSDLIGSDGVEVFPSWETLPHERLSPRADTVGRRLAVLRRLAHPEEHDHGR- 122 Query: 130 LQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFA 189 ++V+VT VRSL+QP+ LG + PV L VGDE FE ++ +L LAY RVDMV +RGEFA Sbjct: 123 IRVLVTTVRSLIQPIAPGLGELAPVRLRVGDEHDFEELVEKLAALAYNRVDMVEKRGEFA 182 Query: 190 VRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSD 249 VRGGI+D+F PT EHP+RVEFWGDE+TE+R FSV DQRS+PE TL A ACRELL+++ Sbjct: 183 VRGGIVDVFPPTEEHPLRVEFWGDEVTEVRPFSVADQRSLPEAQDTTLFAPACRELLITE 242 Query: 250 DVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLT 309 V E+ + ++L K+A G PV+GMEAL+P LC + LLT Sbjct: 243 QVQERAAKL---------AEQHEADAHLNEMLGKIAGGAPVEGMEALIPALCEGEMRLLT 293 Query: 310 DQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFV 369 D T V++ DPEKVR +AADL++T + FLEASW VAA G AP+D L S + Sbjct: 294 DLVPGGTHVVVADPEKVRARAADLVRTGQEFLEASWMVAADGG--RAPID---LGASAYR 348 Query: 370 ELGDVQAAAIRSGHPWWTLSQLS------DESALELDIRAAPSTRGHQHAIDGIFAMLRA 423 L +V A +G PWWTL+QLS D+ + L ++ + RG ++ FA LRA Sbjct: 349 GLAEVAAHTESTGLPWWTLTQLSSEDTEDDDGVVRLALKQVDAYRGE---VERAFADLRA 405 Query: 424 HVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 483 H GG A +V G GTA R V++L E ++ Sbjct: 406 HTTAGGAAVLVVAGAGTAQRAVQQLREGELPARLAEDGLTAEPEPGVVTVARGGLEDGFA 465 Query: 484 XXIPGANLVIITEADLTGSRA--TPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGRF 541 P LV++TEADLTG R + + +R+ ++RR+A DPLAL AGD VVH+QHGIG++ Sbjct: 466 A--PEVALVVLTEADLTGGRGGTSTKDMRRMPSRRRNAVDPLALKAGDFVVHEQHGIGKY 523 Query: 542 VEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGSD 601 VEMV+RTVGGA REYLVLEYAS+K+ + D+L+VP D LD++SRYVGG+ P L++LGGSD Sbjct: 524 VEMVQRTVGGATREYLVLEYASSKRGQPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSD 583 Query: 602 WANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTAI 661 W NTK KAR AV+EIA ELV LYA RQ++PGHAFG DTPWQ E+EDAF +TET DQL AI Sbjct: 584 WKNTKAKARKAVKEIAAELVQLYAARQSAPGHAFGADTPWQRELEDAFPYTETGDQLAAI 643 Query: 662 TEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRTF 721 EVK DM+++VPMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLA QHL TF Sbjct: 644 DEVKADMQRAVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTF 703 Query: 722 TERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVVD 781 T+RM FPVTVKGLSRFTD ES GLAEG+VD+VIGTHRLLQTGV +KDLGLV+VD Sbjct: 704 TDRMRSFPVTVKGLSRFTDPLESEQTTTGLAEGTVDVVIGTHRLLQTGVRYKDLGLVIVD 763 Query: 782 EEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 841 EEQ FGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+PVLTY Sbjct: 764 EEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTY 823 Query: 842 VGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPEDL 901 VG +D+KQVAAA+RRELLRDGQ F+VHNRV +I +AA + LVPEAR+V AHGQM ED Sbjct: 824 VGAYDEKQVAAAIRRELLRDGQVFFVHNRVQTIEKAARHLRELVPEARIVTAHGQMNEDR 883 Query: 902 LETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHER 961 LE ++GFW RE+D+LVCTTIVETGLDI NANTL+VER+D GLSQLHQLRGRVGR+ ER Sbjct: 884 LEKIIQGFWEREHDVLVCTTIVETGLDISNANTLIVERSDVLGLSQLHQLRGRVGRARER 943 Query: 962 GYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAG 1021 GYAYFLYP + PLT+ A+DRL TIAQN+ELGAGMAVA+KDLEIRGAGN+LG EQSGH+AG Sbjct: 944 GYAYFLYPEEKPLTDTAHDRLATIAQNSELGAGMAVAMKDLEIRGAGNILGAEQSGHIAG 1003 Query: 1022 VGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEGY 1081 VGFDLYVRLVGEAVEA+R A + EE +VR+DLPVDAH+P DY+ +RLRLE Y Sbjct: 1004 VGFDLYVRLVGEAVEAFRRHAGAEPGAGEEELPEVRVDLPVDAHIPHDYVPGERLRLEAY 1063 Query: 1082 RRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTMR 1141 R++AAA + AV EL DRYG+LPEP +RL+ VA R LCR G+ EVT S +R Sbjct: 1064 RKIAAAGDTEALDAVRAELTDRYGSLPEPVERLLKVAAFRQLCRAHGVTEVTQQGTS-LR 1122 Query: 1142 LSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVAD 1201 +P+ L DS VRLKR+YP A Y+A TV VP P G++GG +G P +RD L+ A Sbjct: 1123 AAPLELADSQLVRLKRLYPKAVYKAAVRTVSVPRPTEGAAGGRIGAPPLRDEALLDWCAK 1182 Query: 1202 LITALQGLPRKV 1213 L+ +L G P V Sbjct: 1183 LLESLAGRPAPV 1194 >tr|C7MZH3|C7MZH3_SACVD Tax_Id=471857 SubName: Full=Transcription-repair coupling factor Mfd;[Saccharomonospora viridis] Length = 1199 Score = 1331 bits (3444), Expect = 0.0 Identities = 717/1211 (59%), Positives = 868/1211 (71%), Gaps = 36/1211 (2%) Query: 13 IAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG---PLLVVTATG 69 ++GL+ L+ P ++E+AG +L A +L VA+ A G P+L VT TG Sbjct: 13 LSGLLSALLSDPALRGVVEQAGAPLLDLD-GSTATHQLVVAALAADRGAGRPVLAVTPTG 71 Query: 70 REASNLTAELRGVFGA-AVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGP 128 R+A LTA LR + G VA FPSWETLPHERLSP DTVG RL VLRRLA PD L Sbjct: 72 RQAEELTAALRSLLGENLVADFPSWETLPHERLSPRADTVGKRLEVLRRLAQPDHGGL-- 129 Query: 129 PLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEF 188 +VVV VRSL+QPM LG + PV L VG E FE V+ +LVELAYTRVDMV +RGEF Sbjct: 130 --RVVVATVRSLIQPMAPGLGGLHPVELRVGQESDFEAVLDQLVELAYTRVDMVEKRGEF 187 Query: 189 AVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLS 248 AVRGGILDIFGPTAEHP R+EFWGDE++E+R F+V DQRS+P V ++A CRE+LL+ Sbjct: 188 AVRGGILDIFGPTAEHPHRIEFWGDEVSEIRAFAVSDQRSLPG-EVTEVIAPPCREILLT 246 Query: 249 DDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALL 308 DV A + ++++L KLA+G+P +GMEAL+PVLC + LL Sbjct: 247 PDVKARAAEL---------ARTHADNAQLSEMLTKLADGVPCEGMEALIPVLCEGELQLL 297 Query: 309 TDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGF 368 TD T V+L +PEK R +AADL++T + FLEASW AA G + AP+D L S + Sbjct: 298 TDALPEGTHVVLIEPEKSRARAADLVRTGQEFLEASWMSAADGGE--APLD---LGASAY 352 Query: 369 VELGDVQAAAIRSGHPWWTLSQLSDES-ALELDIRAAPSTRGHQHAIDGIFAMLRAHVAT 427 +L +V+A A + WWTLSQL+ ES A + I +AP+ RG ++ + LRAH A+ Sbjct: 353 RDLDEVRAHATETNRCWWTLSQLTSESGAHHVAIDSAPAYRGE---LERVATDLRAHTAS 409 Query: 428 GGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIP 487 GG A +V G GTA R V++L+ +++ P Sbjct: 410 GGAAVVVVAGAGTAKRAVDQLSGAEVPATLATEGLTEEPKPGVVTVTCGGISDGFVA--P 467 Query: 488 GANLVIITEADLTGSRATPVEGK-----RLAAKRRSAADPLALTAGDLVVHDQHGIGRFV 542 G+ LV+++EAD+TG AT ++ ++RR+A DPLAL +GD VVHDQHGIGRFV Sbjct: 468 GSALVVLSEADITGRGATAGRSNVDLNTKMPSRRRNAVDPLALKSGDYVVHDQHGIGRFV 527 Query: 543 EMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGSDW 602 EMV RTVGGA REYLV+EYA +K+ D+L+VP D LD++SRYVGG+ P L+++GG+DW Sbjct: 528 EMVRRTVGGATREYLVIEYAPSKRGHPGDRLFVPTDQLDEVSRYVGGETPTLNKMGGADW 587 Query: 603 ANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTAIT 662 TK +AR AV+EIA ELV LYA RQA+PGHAF PDTPWQ E+EDAF FTET DQL AI Sbjct: 588 KKTKARARKAVKEIAAELVQLYAARQAAPGHAFSPDTPWQRELEDAFPFTETADQLAAID 647 Query: 663 EVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRTFT 722 EVK DME+ VPMDRVICGDVGYGK EIAVRAAFKAVQDGKQV VLVPTT+LA QHL TF+ Sbjct: 648 EVKRDMERDVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTILAQQHLATFS 707 Query: 723 ERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVVDE 782 ERM FPVT+KGLSRFTD E+ VI+GLA+G VDIVIGTHRLLQ+ V +KDLGLV+VDE Sbjct: 708 ERMRSFPVTIKGLSRFTDPHEAEQVINGLADGEVDIVIGTHRLLQSNVRYKDLGLVIVDE 767 Query: 783 EQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYV 842 EQ FGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPE+R+P+LTYV Sbjct: 768 EQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYV 827 Query: 843 GPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPEDLL 902 G +DDKQVAAA+RRELLRDGQ FYVHNRVSSI +AA R+ LVPEARVV AHGQM E L Sbjct: 828 GAYDDKQVAAAIRRELLRDGQVFYVHNRVSSIERAARRLRELVPEARVVTAHGQMNEHRL 887 Query: 903 ETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHERG 962 E ++GFW REYD+LVCTTIVETGLDI NANTL+VE AD GL+QLHQLRGRVGR ERG Sbjct: 888 EQIIQGFWEREYDVLVCTTIVETGLDISNANTLIVEHADQLGLAQLHQLRGRVGRGRERG 947 Query: 963 YAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGV 1022 YAYFLYP PLTE A+DRL TIAQN ELGAGMAVA+KDLEIRGAGN+LG EQSGH+AGV Sbjct: 948 YAYFLYPADKPLTETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGV 1007 Query: 1023 GFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYR 1082 GFDLYVRLVGEAVEA+R A P +VR+DLPVDAH+P DY+ +RLRLE YR Sbjct: 1008 GFDLYVRLVGEAVEAFRRHAGAGEPEEEPTPTEVRVDLPVDAHIPHDYVPGERLRLEAYR 1067 Query: 1083 RLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTMRL 1142 ++AAA + AV +EL+DRYG LP P +RL+AVA R +CR +G+ EVT + +R Sbjct: 1068 KIAAAPDAEGLDAVREELVDRYGKLPAPVERLLAVAAFRQVCREAGVTEVTL-QGNNIRF 1126 Query: 1143 SPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVADL 1202 +P++L DS VRLKR+YP A ++A TV VP P G +GG +G P +RD L+ L Sbjct: 1127 TPLQLADSQLVRLKRLYPRAVFKAVTNTVSVPRPTEGPAGGRIGAPVLRDEPLLDWCTTL 1186 Query: 1203 ITALQGLPRKV 1213 I +L P V Sbjct: 1187 IRSLTRTPTAV 1197 >tr|Q8FQT5|Q8FQT5_COREF Tax_Id=152794 SubName: Full=Putative transcription-repair coupling factor;[Corynebacterium efficiens] Length = 1218 Score = 1283 bits (3320), Expect = 0.0 Identities = 685/1210 (56%), Positives = 848/1210 (70%), Gaps = 40/1210 (3%) Query: 13 IAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGREA 72 +AGL+++A T P ++ G R L L G AR +V LA P+LVVTATGREA Sbjct: 5 LAGLLKVAATDPKLKGMISNVGAR--NLHLTGVDQARPWVIGTLAHHAPVLVVTATGREA 62 Query: 73 SNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPLQV 132 +LTAELR + G VA FPSWETLPHERLSPGVD VG R VL +L DDA+ + Sbjct: 63 EDLTAELRAMMGDKVAWFPSWETLPHERLSPGVDIVGRRAQVLNKL---DDAK------I 113 Query: 133 VVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVRG 192 +VTA R+ QP+ + +P+ L G E F + LV AY VDMV +RGEFA RG Sbjct: 114 IVTAARAFCQPVLKEAAGRQPLILREGAEADFSALGEELVFRAYKNVDMVAKRGEFATRG 173 Query: 193 GILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDVX 252 GILD+F T ++PVR+EFWGDE++++R FSV DQR+IPE+ +D + RELL++D+V Sbjct: 174 GILDVFPTTLDYPVRIEFWGDEVSDIRQFSVADQRTIPEMTLDEIEIYPARELLITDEVA 233 Query: 253 XXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLTDQF 312 + P + ++ ++L+++++ VDGMEAL+P L L + Sbjct: 234 ARAAELM--------VKHPG-NPTLVEMLSRISDRTDVDGMEALIPALVDTPMVPLLELM 284 Query: 313 AADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFVELG 372 +T +++ PEKVR + ADL TD F+ A W AA+GAD V L S + Sbjct: 285 PENTHIMVIAPEKVRTRIADLEATDAEFMAAGWEAAAMGADGPVSVKGLDLEASSYRSYD 344 Query: 373 DVQAAAIRSGHPWWTLS-----QLSDESALELDIRAAPSTRGHQHAIDGIFAMLRAHVAT 427 ++ +A S PWWT + + SD L LD P+ RG AI+ + A+L AH Sbjct: 345 SLEVSASTSNLPWWTFAPTGMFEASDAETLPLDFEPGPTPRGDLEAINEMMALLLAHTKA 404 Query: 428 GGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-- 485 GG AA + P G R+VER AE I Sbjct: 405 GGRAAFIAPSEGAIRRMVERFAEQGIPTHVATPGWEPSPGQVTLYHALSHAGLVFPKVRK 464 Query: 486 ---IPGANLVIITEADLTGSRATPVEG-KRLAAKRRSAADPLALTAGDLVVHDQHGIGRF 541 LV+ITE DLTG+R + G KR A+RR+ DPLALT GDLVVH+ HGIGRF Sbjct: 465 HRDADALPLVVITETDLTGNRVGDIAGAKRRPARRRNKVDPLALTPGDLVVHETHGIGRF 524 Query: 542 VEMVERTVGG----ARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRL 597 ++M ERT+ +RREY+VLEYA +K+ + D+LYVPMDSLD LSRYVGG+ P LS++ Sbjct: 525 IKMTERTISTGDETSRREYIVLEYAPSKRGQPGDQLYVPMDSLDMLSRYVGGEKPTLSKM 584 Query: 598 GGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQ 657 GGSDW NTK KAR AVREIAGELV LYAKRQA+PGHAFGPDTPWQ EMED F + ET DQ Sbjct: 585 GGSDWKNTKKKARAAVREIAGELVELYAKRQAAPGHAFGPDTPWQKEMEDNFPYVETEDQ 644 Query: 658 LTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQH 717 + AI VK DMEK VPMDRVI GDVGYGK E+AVRAAFKAVQDGKQVAVLVPTTLLA QH Sbjct: 645 MLAIDAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQH 704 Query: 718 LRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGL 777 TF ERMAGFPVT+ GLSRFT AES+ + GLA G VDIV+GTHRLLQTGV WK+LGL Sbjct: 705 KSTFEERMAGFPVTIHGLSRFTSTAESKETLAGLASGEVDIVVGTHRLLQTGVQWKNLGL 764 Query: 778 VVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYP 837 V+VDEEQ FGVEHKEHIK+LR+HVDVLTMSATPIPRTLEMS+AGIREM+T+LTPPE+R+P Sbjct: 765 VIVDEEQRFGVEHKEHIKALRSHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHP 824 Query: 838 VLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQM 897 +LTYVGP++DKQVAA++RRELLRDGQ F++HN+V+ I + A + LVPEARVVVAHGQM Sbjct: 825 ILTYVGPYEDKQVAASIRRELLRDGQVFFIHNKVADIEKKARELRDLVPEARVVVAHGQM 884 Query: 898 PEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGR 957 E+LLE T++GFW+REYD+LVCTTIVETGLDI NANTL+VE A GLSQLHQLRGRVGR Sbjct: 885 SEELLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGR 944 Query: 958 SHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSG 1017 S ERGYAYFLYP A LTE +YDRL TIAQNN+LGAGMAVA+KDLE+RGAGNVLG EQSG Sbjct: 945 SRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSG 1004 Query: 1018 HVAGVGFDLYVRLVGEAVEAYRAVADGKTAI-TPEEPKDVRIDLPVDAHLPPDYIASDRL 1076 H+AGVGFDLYVRLVGEAVEAYRA+ADGK+ T + P +VR+DLPVDAH+P +YI S+RL Sbjct: 1005 HIAGVGFDLYVRLVGEAVEAYRALADGKSVDGTVKGPTEVRVDLPVDAHIPENYINSERL 1064 Query: 1077 RLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPS 1136 RLE YR+LA + S++++ V+E+ DRYG +PE RL+AVA+LR R +G+ +V A Sbjct: 1065 RLEIYRKLATSESESDLQLAVEEMEDRYGPIPEEVSRLLAVARLRHQMRAAGLTDV-AVQ 1123 Query: 1137 ASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELV 1196 + +++ P+ L DS QVRLKR++P A YRA A +QV P+AG + + P +RDV+L+ Sbjct: 1124 GTRIKIHPVELKDSQQVRLKRLFPSATYRAAAKAIQVSFPKAGRN---VTDPLLRDVDLL 1180 Query: 1197 QAVADLITAL 1206 Q V+D I + Sbjct: 1181 QWVSDFIAKM 1190 >tr|C8NN51|C8NN51_COREF Tax_Id=196164 (mfd)SubName: Full=Transcription-repair coupling factor; EC=3.6.1.-;[Corynebacterium efficiens YS-314] Length = 1215 Score = 1283 bits (3320), Expect = 0.0 Identities = 685/1210 (56%), Positives = 848/1210 (70%), Gaps = 40/1210 (3%) Query: 13 IAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGREA 72 +AGL+++A T P ++ G R L L G AR +V LA P+LVVTATGREA Sbjct: 2 LAGLLKVAATDPKLKGMISNVGAR--NLHLTGVDQARPWVIGTLAHHAPVLVVTATGREA 59 Query: 73 SNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPLQV 132 +LTAELR + G VA FPSWETLPHERLSPGVD VG R VL +L DDA+ + Sbjct: 60 EDLTAELRAMMGDKVAWFPSWETLPHERLSPGVDIVGRRAQVLNKL---DDAK------I 110 Query: 133 VVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVRG 192 +VTA R+ QP+ + +P+ L G E F + LV AY VDMV +RGEFA RG Sbjct: 111 IVTAARAFCQPVLKEAAGRQPLILREGAEADFSALGEELVFRAYKNVDMVAKRGEFATRG 170 Query: 193 GILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDVX 252 GILD+F T ++PVR+EFWGDE++++R FSV DQR+IPE+ +D + RELL++D+V Sbjct: 171 GILDVFPTTLDYPVRIEFWGDEVSDIRQFSVADQRTIPEMTLDEIEIYPARELLITDEVA 230 Query: 253 XXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLTDQF 312 + P + ++ ++L+++++ VDGMEAL+P L L + Sbjct: 231 ARAAELM--------VKHPG-NPTLVEMLSRISDRTDVDGMEALIPALVDTPMVPLLELM 281 Query: 313 AADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFVELG 372 +T +++ PEKVR + ADL TD F+ A W AA+GAD V L S + Sbjct: 282 PENTHIMVIAPEKVRTRIADLEATDAEFMAAGWEAAAMGADGPVSVKGLDLEASSYRSYD 341 Query: 373 DVQAAAIRSGHPWWTLS-----QLSDESALELDIRAAPSTRGHQHAIDGIFAMLRAHVAT 427 ++ +A S PWWT + + SD L LD P+ RG AI+ + A+L AH Sbjct: 342 SLEVSASTSNLPWWTFAPTGMFEASDAETLPLDFEPGPTPRGDLEAINEMMALLLAHTKA 401 Query: 428 GGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-- 485 GG AA + P G R+VER AE I Sbjct: 402 GGRAAFIAPSEGAIRRMVERFAEQGIPTHVATPGWEPSPGQVTLYHALSHAGLVFPKVRK 461 Query: 486 ---IPGANLVIITEADLTGSRATPVEG-KRLAAKRRSAADPLALTAGDLVVHDQHGIGRF 541 LV+ITE DLTG+R + G KR A+RR+ DPLALT GDLVVH+ HGIGRF Sbjct: 462 HRDADALPLVVITETDLTGNRVGDIAGAKRRPARRRNKVDPLALTPGDLVVHETHGIGRF 521 Query: 542 VEMVERTVGG----ARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRL 597 ++M ERT+ +RREY+VLEYA +K+ + D+LYVPMDSLD LSRYVGG+ P LS++ Sbjct: 522 IKMTERTISTGDETSRREYIVLEYAPSKRGQPGDQLYVPMDSLDMLSRYVGGEKPTLSKM 581 Query: 598 GGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQ 657 GGSDW NTK KAR AVREIAGELV LYAKRQA+PGHAFGPDTPWQ EMED F + ET DQ Sbjct: 582 GGSDWKNTKKKARAAVREIAGELVELYAKRQAAPGHAFGPDTPWQKEMEDNFPYVETEDQ 641 Query: 658 LTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQH 717 + AI VK DMEK VPMDRVI GDVGYGK E+AVRAAFKAVQDGKQVAVLVPTTLLA QH Sbjct: 642 MLAIDAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQH 701 Query: 718 LRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGL 777 TF ERMAGFPVT+ GLSRFT AES+ + GLA G VDIV+GTHRLLQTGV WK+LGL Sbjct: 702 KSTFEERMAGFPVTIHGLSRFTSTAESKETLAGLASGEVDIVVGTHRLLQTGVQWKNLGL 761 Query: 778 VVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYP 837 V+VDEEQ FGVEHKEHIK+LR+HVDVLTMSATPIPRTLEMS+AGIREM+T+LTPPE+R+P Sbjct: 762 VIVDEEQRFGVEHKEHIKALRSHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHP 821 Query: 838 VLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQM 897 +LTYVGP++DKQVAA++RRELLRDGQ F++HN+V+ I + A + LVPEARVVVAHGQM Sbjct: 822 ILTYVGPYEDKQVAASIRRELLRDGQVFFIHNKVADIEKKARELRDLVPEARVVVAHGQM 881 Query: 898 PEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGR 957 E+LLE T++GFW+REYD+LVCTTIVETGLDI NANTL+VE A GLSQLHQLRGRVGR Sbjct: 882 SEELLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGR 941 Query: 958 SHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSG 1017 S ERGYAYFLYP A LTE +YDRL TIAQNN+LGAGMAVA+KDLE+RGAGNVLG EQSG Sbjct: 942 SRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSG 1001 Query: 1018 HVAGVGFDLYVRLVGEAVEAYRAVADGKTAI-TPEEPKDVRIDLPVDAHLPPDYIASDRL 1076 H+AGVGFDLYVRLVGEAVEAYRA+ADGK+ T + P +VR+DLPVDAH+P +YI S+RL Sbjct: 1002 HIAGVGFDLYVRLVGEAVEAYRALADGKSVDGTVKGPTEVRVDLPVDAHIPENYINSERL 1061 Query: 1077 RLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPS 1136 RLE YR+LA + S++++ V+E+ DRYG +PE RL+AVA+LR R +G+ +V A Sbjct: 1062 RLEIYRKLATSESESDLQLAVEEMEDRYGPIPEEVSRLLAVARLRHQMRAAGLTDV-AVQ 1120 Query: 1137 ASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELV 1196 + +++ P+ L DS QVRLKR++P A YRA A +QV P+AG + + P +RDV+L+ Sbjct: 1121 GTRIKIHPVELKDSQQVRLKRLFPSATYRAAAKAIQVSFPKAGRN---VTDPLLRDVDLL 1177 Query: 1197 QAVADLITAL 1206 Q V+D I + Sbjct: 1178 QWVSDFIAKM 1187 >tr|A4QCT9|A4QCT9_CORGB Tax_Id=340322 SubName: Full=Putative uncharacterized protein;[Corynebacterium glutamicum] Length = 1214 Score = 1279 bits (3309), Expect = 0.0 Identities = 688/1225 (56%), Positives = 854/1225 (69%), Gaps = 42/1225 (3%) Query: 13 IAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGREA 72 +AGL+++A T P LM G + L + G AR + ALA P+LVVTATGREA Sbjct: 2 LAGLLKVAATDPKLKGLMSNVGQQ--HLHITGIDQARPWAIGALAHHAPVLVVTATGREA 59 Query: 73 SNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPLQV 132 +LTAEL+ + G VA PSWETLPHERLSPGVD VG R VL L L+V Sbjct: 60 EDLTAELKAMMGDKVAWLPSWETLPHERLSPGVDIVGKRAQVLNHLGD---------LKV 110 Query: 133 VVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVRG 192 VV A R+ QP+ P+TL G E F + LV AY VDMV +RGEFA RG Sbjct: 111 VVAAARAFCQPVLKDAEGRAPLTLKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRG 170 Query: 193 GILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDVX 252 GILDIF T ++PVRVEFWGDE++++R FSV DQR+IPEI + ++ RELL++++V Sbjct: 171 GILDIFPTTLDYPVRVEFWGDEVSDIRQFSVADQRTIPEITIKSIEIFPARELLITEEVA 230 Query: 253 XXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLTDQF 312 ++ P + ++ ++L+++A+ VDGMEAL+P L + + Sbjct: 231 SRAESLI--------SKHPG-NPTLVEMLSRIADSQDVDGMEALIPALTDTPMVPMLELM 281 Query: 313 AADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFVELG 372 +T VL+ PEKVR + ADL TD FL A W AA+GAD + L S + Sbjct: 282 PENTHVLVIAPEKVRRRIADLEATDAEFLMAGWEAAAMGADGPVAAEGLDLEASSYRSYE 341 Query: 373 DVQAAAIRSGHPWWTLS-----QLSDESALELDIRAAPSTRGHQHAIDGIFAMLRAHVAT 427 ++ +A +S WWT + + S+E+ L LD A P+ RG ID + A L AH Sbjct: 342 SLEVSASKSDVRWWTFAPPGMFEASEEATLPLDFEAGPAPRGELPKIDAMMAQLLAHTTG 401 Query: 428 GGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIP 487 GG AA + P G R+V+R AE I Sbjct: 402 GGRAAFIAPTQGAIKRMVDRFAEKGIPTHVATPGWEPTPGQVTLYHALSHAGLVFPKVRK 461 Query: 488 GAN-----LVIITEADLTGSRATPVEG-KRLAAKRRSAADPLALTAGDLVVHDQHGIGRF 541 + LV+ITE DLTG+R + G KR AKRR+ DPLAL GDLVVH+ HGIGRF Sbjct: 462 HRDGAAMPLVVITETDLTGNRVGDIAGAKRRPAKRRNKVDPLALEPGDLVVHETHGIGRF 521 Query: 542 VEMVERTVGG----ARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRL 597 V+M ERT+ +RREY+VLEYA +K+ + D+LYVPMD+LD LSRYVGG+ P LS++ Sbjct: 522 VKMTERTISAGDETSRREYIVLEYAPSKRGQPGDQLYVPMDALDMLSRYVGGEKPTLSKM 581 Query: 598 GGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQ 657 GGSDW N K KAR AVREIAGELV LYAKRQ++PGH F PDTPWQ EMED F + ET DQ Sbjct: 582 GGSDWKNAKKKARAAVREIAGELVELYAKRQSAPGHPFAPDTPWQKEMEDNFPYVETEDQ 641 Query: 658 LTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQH 717 + AI VK DMEKSVPMDRVI GDVGYGK E+AVRAAFKAVQDGKQVAVLVPTTLLA QH Sbjct: 642 MLAIDAVKEDMEKSVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQH 701 Query: 718 LRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGL 777 TF ERM GFPVT+KGLSRFT AESR ++ GLA GSVDIVIGTHRLLQTGV WK+LGL Sbjct: 702 QSTFEERMTGFPVTIKGLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGL 761 Query: 778 VVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYP 837 V+VDEEQ FGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREM+T+LTPPE+R+P Sbjct: 762 VIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHP 821 Query: 838 VLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQM 897 +LTYVGP++DKQVAA++RRELLRDGQ F++HN+V+ I + A + LVPEARVVVAHGQM Sbjct: 822 ILTYVGPYEDKQVAASIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPEARVVVAHGQM 881 Query: 898 PEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGR 957 E+LLE T++GFW+REYD+LVCTTIVETGLDI NANTL+VE A GLSQLHQLRGRVGR Sbjct: 882 SEELLEQTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGR 941 Query: 958 SHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSG 1017 S ERGYAYFLYP A LTE++YDRL TIAQNN+LGAGMAVA+KDLE+RGAGNVLG EQSG Sbjct: 942 SRERGYAYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSG 1001 Query: 1018 HVAGVGFDLYVRLVGEAVEAYRAVADGKTAI-TPEEPKDVRIDLPVDAHLPPDYIASDRL 1076 H+AGVGFDLYVRLVGEAVEAYRA+ADGK T + PK++R+DLPVDAH+P YI ++RL Sbjct: 1002 HIAGVGFDLYVRLVGEAVEAYRALADGKVVDGTVKGPKEIRVDLPVDAHIPEKYINAERL 1061 Query: 1077 RLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPS 1136 RLE YR+LA + S+ ++ V+E+ DRYG +PE +RL+AV++LR L R + + ++ A Sbjct: 1062 RLEIYRKLAQSESEVDLRLAVEEMEDRYGPIPEEVERLLAVSRLRHLMREAHLTDI-AVQ 1120 Query: 1137 ASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELV 1196 + +++ P+ L DS QVRLKR++PGA YRA A +Q+ P+AG+ + P +RDV+L+ Sbjct: 1121 GTRIKVHPVDLADSQQVRLKRLFPGATYRAAAKAIQLSFPKAGNK---VTDPLLRDVDLL 1177 Query: 1197 QAVADLITALQGLPRKVIGITGPEP 1221 Q VA+ I+ + L + I + GP+P Sbjct: 1178 QWVANFISNMFNL--EEIDVRGPQP 1200 >tr|Q6M6I8|Q6M6I8_CORGL Tax_Id=1718 (mfd)SubName: Full=PUTATIVE TRANSCRIPTION-REPAIR COUPLING FACTOR;[Corynebacterium glutamicum] Length = 1217 Score = 1277 bits (3305), Expect = 0.0 Identities = 687/1225 (56%), Positives = 853/1225 (69%), Gaps = 42/1225 (3%) Query: 13 IAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGREA 72 +AGL+++A T P LM G + L + G AR + ALA P+LVVTATGREA Sbjct: 5 LAGLLKVAATDPKLKGLMSNVGQQ--HLHITGIDQARPWAIGALAHHAPVLVVTATGREA 62 Query: 73 SNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPLQV 132 +LTAEL+ + G VA PSWETLPHERLSPGVD VG R VL L L+V Sbjct: 63 EDLTAELKAMMGDKVAWLPSWETLPHERLSPGVDIVGKRAQVLNHLGD---------LKV 113 Query: 133 VVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVRG 192 VV A R+ QP+ P+TL G E F + LV AY VDMV +RGEFA RG Sbjct: 114 VVAAARAFCQPVLKDAEGRAPLTLKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRG 173 Query: 193 GILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDVX 252 GILDIF T ++PVRVEFWGDE++++R FSV DQR+IPEI + ++ RELL++++V Sbjct: 174 GILDIFPTTLDYPVRVEFWGDEVSDIRQFSVADQRTIPEITIKSIEIFPARELLITEEVA 233 Query: 253 XXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLTDQF 312 ++ P + ++ ++L+++A+ VDGMEAL+P L + + Sbjct: 234 SRAESLI--------SKHPG-NPTLVEMLSRIADSQDVDGMEALIPALTDTPMVPMLELM 284 Query: 313 AADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFVELG 372 +T VL+ PEKVR + ADL TD FL A W AA+GAD + L S + Sbjct: 285 PENTHVLVIAPEKVRRRIADLEATDAEFLMAGWEAAAMGADGPVAAEGLDLEASSYRSYE 344 Query: 373 DVQAAAIRSGHPWWTLS-----QLSDESALELDIRAAPSTRGHQHAIDGIFAMLRAHVAT 427 ++ +A +S WWT + + S+E+ L LD A P+ RG ID + A L AH Sbjct: 345 SLEVSASKSDVRWWTFAPPGMFEASEEATLPLDFEAGPAPRGELPKIDAMMAQLLAHTTG 404 Query: 428 GGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIP 487 GG AA + P G R+V+R AE I Sbjct: 405 GGRAAFIAPTQGAIKRMVDRFAEKGIPTHVATPGWEPTPGQVTLYHALSHAGLVFPKVRK 464 Query: 488 GAN-----LVIITEADLTGSRATPVEG-KRLAAKRRSAADPLALTAGDLVVHDQHGIGRF 541 + LV+ITE DLTG+R + G KR AKRR+ DPLAL GDLVVH+ HGIGRF Sbjct: 465 HRDGAAMPLVVITETDLTGNRVGDIAGAKRRPAKRRNKVDPLALEPGDLVVHETHGIGRF 524 Query: 542 VEMVERTVGG----ARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRL 597 V+M ERT+ +RREY+VLEYA +K+ + D+LYVPMD+LD LSRYVGG+ P LS++ Sbjct: 525 VKMTERTISAGDETSRREYIVLEYAPSKRGQPGDQLYVPMDALDMLSRYVGGEKPTLSKM 584 Query: 598 GGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQ 657 GGSDW N K KAR AVREIAGELV LYAKRQ++PGH F PDTPWQ EMED F + ET DQ Sbjct: 585 GGSDWKNAKKKARAAVREIAGELVELYAKRQSAPGHPFAPDTPWQKEMEDNFPYVETEDQ 644 Query: 658 LTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQH 717 + AI VK DMEKSVPMDRVI GDVGYGK E+AVRAAFKAVQDGKQVAVLVPTTLLA QH Sbjct: 645 MLAIDAVKEDMEKSVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQH 704 Query: 718 LRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGL 777 TF ERM GFPVT+KGLSRFT AESR ++ GLA GSVDIVIGTHRLLQTGV WK+LGL Sbjct: 705 QSTFEERMTGFPVTIKGLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGL 764 Query: 778 VVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYP 837 V+VDEEQ FGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREM+T+LTPPE+R+P Sbjct: 765 VIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHP 824 Query: 838 VLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQM 897 +LTYVGP++DKQVAA++RRELLRDGQ F++HN+V+ I + A + LVPEARVVVAHGQM Sbjct: 825 ILTYVGPYEDKQVAASIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPEARVVVAHGQM 884 Query: 898 PEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGR 957 E+LLE T++GFW+REYD+LVCTTIVETGLDI NANTL+VE A GLSQLHQLRGRVGR Sbjct: 885 SEELLEQTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGR 944 Query: 958 SHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSG 1017 S ERGYAYFLYP A LTE++YDRL TIAQNN+LGAGMAVA+KDLE+RGAGNVLG EQSG Sbjct: 945 SRERGYAYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSG 1004 Query: 1018 HVAGVGFDLYVRLVGEAVEAYRAVADGKTAI-TPEEPKDVRIDLPVDAHLPPDYIASDRL 1076 H+AGVGFDLYVRLVGEAVEAYRA+ADGK T + PK++R+DLPVDAH+P YI ++RL Sbjct: 1005 HIAGVGFDLYVRLVGEAVEAYRALADGKVVDGTVKGPKEIRVDLPVDAHIPEKYINAERL 1064 Query: 1077 RLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPS 1136 RLE YR+LA + S+ ++ V+E+ DRYG +PE +RL+AV++LR L R + + ++ A Sbjct: 1065 RLEIYRKLAQSESEVDLRLAVEEMEDRYGPIPEEVERLLAVSRLRHLMREAHLTDI-AVQ 1123 Query: 1137 ASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELV 1196 + +++ P+ L DS QVRLKR++PGA YRA A +Q+ P+ G+ + P +RDV+L+ Sbjct: 1124 GTRIKVHPVDLADSQQVRLKRLFPGATYRAAAKAIQLSFPKTGNK---VTDPLLRDVDLL 1180 Query: 1197 QAVADLITALQGLPRKVIGITGPEP 1221 Q VA+ I+ + L + I + GP+P Sbjct: 1181 QWVANFISNMFNL--EEIDVRGPQP 1203 >tr|Q6NI67|Q6NI67_CORDI Tax_Id=1717 (mfd)SubName: Full=Transcription-repair coupling factor;[Corynebacterium diphtheriae] Length = 1264 Score = 1275 bits (3298), Expect = 0.0 Identities = 685/1240 (55%), Positives = 844/1240 (68%), Gaps = 50/1240 (4%) Query: 6 PACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVV 65 PA +AGL+++A T P L++ G L + G AR + +ALA P+LVV Sbjct: 7 PAAQPPMLAGLLKVAATDPKIKGLLQHVGE--PHLHITGIDQARPWAIAALAHRAPVLVV 64 Query: 66 TATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDAR 125 TATGREA +L+AELR + G VA FP+WETLPHERLSPG D G R +L +A Sbjct: 65 TATGREAEDLSAELRAMLGEKVAWFPAWETLPHERLSPGADIAGQRARILSHIAD----- 119 Query: 126 LGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRR 185 VVVTA R QP+ +Q+ +P+ L V E E +LV AY VD+V +R Sbjct: 120 ----YSVVVTAARGFSQPIVSQVAGRDPLVLEVDSECSLEEATQQLVFRAYHHVDLVAKR 175 Query: 186 GEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACREL 245 GEFA RGGILD+F TA+HPVRVEFWGDE++E+R F V DQR+IP+ V + REL Sbjct: 176 GEFATRGGILDVFPTTAQHPVRVEFWGDEVSEIRGFQVADQRAIPDSDVSRVEVFPAREL 235 Query: 246 LLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDY 305 ++ ++ +E +LAK+++ IP DGMEAL+P L Sbjct: 236 PITPEIAQRAAELAVKFQGNPTLQE---------LLAKISDSIPSDGMEALIPALVDQPM 286 Query: 306 ALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYG 365 L + +T +++ PEK+R + ADL TD FL A W AA+GAD L Sbjct: 287 VTLAELMPENTHIVVVGPEKIRTRVADLQATDAEFLAAGWEAAAMGADGPVATRGLDLDA 346 Query: 366 SGFVELGDVQAAAIRSGHPWWTLS-----QLSDESALELDIRAAPSTRGHQHAIDGIFAM 420 S + ++ A + PWWT + + SD L L+ P+ RG ID + A+ Sbjct: 347 SSYRSYESLENTAQKHTMPWWTFAPPGMFEASDGDTLPLEFEPGPTPRGDLEQIDQMMAL 406 Query: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXX 480 L AH GG AA + P G R+VER E I Sbjct: 407 LLAHTRDGGAAAFIAPAQGAIKRMVERFKEQGIPTKVATPGWQPTLGEVTLYQAMSHAGL 466 Query: 481 XXXXXI-----PGANLVIITEADLTGSRATPVEG-KRLAAKRRSAADPLALTAGDLVVHD 534 P LV+IT+ DLTG+R + G KR AKRR DPLAL GD VVH+ Sbjct: 467 VFPKVRKQPGKPALPLVVITKTDLTGNRVGDIAGAKRRPAKRRHRVDPLALKTGDYVVHE 526 Query: 535 QHGIGRFVEMVERTVGG----ARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQ 590 HGIGRF++M ER + +RREY+VLEYA++K+ + AD+LYVPMDSLD LS+YVGG+ Sbjct: 527 THGIGRFLKMTERVIQSGDETSRREYIVLEYAASKRGQPADQLYVPMDSLDMLSKYVGGE 586 Query: 591 APALSRLGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFG 650 P LS++GGSDW NTK KAR AVREIAGELV LYAKRQ++PGHAF PD+PWQ EMED F Sbjct: 587 KPTLSKMGGSDWKNTKKKARAAVREIAGELVELYAKRQSAPGHAFAPDSPWQHEMEDNFP 646 Query: 651 FTETVDQLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPT 710 + ET DQ+ AI VK DMEK PMDRV+ GDVGYGK E+AVRAAFKAVQDG+QV VLVPT Sbjct: 647 YVETEDQMLAIDAVKADMEKPSPMDRVVVGDVGYGKTEVAVRAAFKAVQDGRQVVVLVPT 706 Query: 711 TLLADQHLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGV 770 TLLA QHL TF ERMAGFPVT+KGLSRFT +ES+ ++ GLA+GSVDIVIGTHRLLQTGV Sbjct: 707 TLLAQQHLSTFEERMAGFPVTIKGLSRFTSPSESKEILKGLADGSVDIVIGTHRLLQTGV 766 Query: 771 CWKDLGLVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 830 WK+LGLV+VDEEQ FGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREMSTILT Sbjct: 767 QWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILT 826 Query: 831 PPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARV 890 PPE+R+P+LTYVG +DKQVAAA+RRELLRDGQ FYVHN+VS I + A + LVPEAR+ Sbjct: 827 PPEDRHPILTYVGAQEDKQVAAAIRRELLRDGQVFYVHNKVSDIEKKARELRELVPEARI 886 Query: 891 VVAHGQMPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQ 950 VVAHGQM E+LLE T++GFW+REYD+LVCTTIVETGLDI NANTL+VE A GLSQLHQ Sbjct: 887 VVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQ 946 Query: 951 LRGRVGRSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNV 1010 LRGRVGRS ERGYAYFLYP A LTE +YDRL TIAQNN+LGAGMAVA+KDLE+RGAGNV Sbjct: 947 LRGRVGRSRERGYAYFLYPKGATLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNV 1006 Query: 1011 LGVEQSGHVAGVGFDLYVRLVGEAVEAYRAVADGKTA-ITPEEPKDVRIDLPVDAHLPPD 1069 LG +QSGH+AGVGFDLYVRLVGEAVEAYRA+ADGK A T + PK++RIDLPVDAH+P D Sbjct: 1007 LGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADGKVADATEQGPKEIRIDLPVDAHIPED 1066 Query: 1070 YIASDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGI 1129 YI S+RLRLE YR+LAA+++D ++A VV+E+ DR+G +P +RL+AV++LR L R +G+ Sbjct: 1067 YINSERLRLEVYRKLAASANDKDLALVVEEMKDRFGPVPHEVKRLLAVSRLRHLARATGL 1126 Query: 1130 IEVTAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPC 1189 ++ + ++L P+ L DS QVRLKR+ P A YRA A +Q+P P+ G+ + Sbjct: 1127 SDI-GVQGTRIKLHPVELTDSKQVRLKRLAPSATYRAAAKAIQLPFPKEGAK---VTDKQ 1182 Query: 1190 IRDVELVQAVADLITAL----------QGLPRKVIGITGP 1219 +RDVEL+Q VAD I + + LP KVI + P Sbjct: 1183 LRDVELLQWVADFIAEMFEHDRVSVTGEKLPDKVISVAQP 1222 >tr|Q8NRS9|Q8NRS9_CORGL Tax_Id=1718 SubName: Full=Transcription-repair coupling factor-superfamily II helicase;[Corynebacterium glutamicum] Length = 1209 Score = 1271 bits (3289), Expect = 0.0 Identities = 684/1221 (56%), Positives = 849/1221 (69%), Gaps = 42/1221 (3%) Query: 17 VELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGREASNLT 76 +++A T P LM G + L + G AR + ALA P+LVVTATGREA +LT Sbjct: 1 MKVAATDPKLKGLMSNVGQQ--HLHITGIDQARPWAIGALAHHAPVLVVTATGREAEDLT 58 Query: 77 AELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPLQVVVTA 136 AEL+ + G VA PSWETLPHERLSPGVD VG R VL L L+VVV A Sbjct: 59 AELKAMMGDKVAWLPSWETLPHERLSPGVDIVGKRAQVLNHLGD---------LKVVVAA 109 Query: 137 VRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVRGGILD 196 R+ QP+ P+TL G E F + LV AY VDMV +RGEFA RGGILD Sbjct: 110 ARAFCQPVLKDAEGRAPLTLKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRGGILD 169 Query: 197 IFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDVXXXXX 256 IF T ++PVRVEFWGDE++++R FSV DQR+IPEI + ++ RELL++++V Sbjct: 170 IFPTTLDYPVRVEFWGDEVSDIRQFSVADQRTIPEITIKSIEIFPARELLITEEVASRAE 229 Query: 257 XXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLTDQFAADT 316 ++ P + ++ ++L+++A+ VDGMEAL+P L + + +T Sbjct: 230 SLI--------SKHPG-NPTLVEMLSRIADSQDVDGMEALIPALTDTPMVPMLELMPENT 280 Query: 317 PVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFVELGDVQA 376 VL+ PEKVR + ADL TD FL A W AA+GAD + L S + ++ Sbjct: 281 HVLVIAPEKVRRRIADLEATDAEFLMAGWEAAAMGADGPVAAEGLDLEASSYRSYESLEV 340 Query: 377 AAIRSGHPWWTLS-----QLSDESALELDIRAAPSTRGHQHAIDGIFAMLRAHVATGGYA 431 +A +S WWT + + S+E+ L LD A P+ RG ID + A L AH GG A Sbjct: 341 SASKSDVRWWTFAPPGMFEASEEATLPLDFEAGPAPRGELPKIDAMMAQLLAHTTGGGRA 400 Query: 432 AIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPGAN- 490 A + P G R+V+R AE I + Sbjct: 401 AFIAPTQGAIKRMVDRFAEKGIPTHVATPGWEPTPGQVTLYHALSHAGLVFPKVRKHRDG 460 Query: 491 ----LVIITEADLTGSRATPVEG-KRLAAKRRSAADPLALTAGDLVVHDQHGIGRFVEMV 545 LV+ITE DLTG+R + G KR AKRR+ DPLAL GDLVVH+ HGIGRFV+M Sbjct: 461 AAMPLVVITETDLTGNRVGDIAGAKRRPAKRRNKVDPLALEPGDLVVHETHGIGRFVKMT 520 Query: 546 ERTVGG----ARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGSD 601 ERT+ +RREY+VLEYA +K+ + D+LYVPMD+LD LSRYVGG+ P LS++GGSD Sbjct: 521 ERTISAGDETSRREYIVLEYAPSKRGQPGDQLYVPMDALDMLSRYVGGEKPTLSKMGGSD 580 Query: 602 WANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTAI 661 W N K KAR AVREIAGELV LYAKRQ++PGH F PDTPWQ EMED F + ET DQ+ AI Sbjct: 581 WKNAKKKARAAVREIAGELVELYAKRQSAPGHPFAPDTPWQKEMEDNFPYVETEDQMLAI 640 Query: 662 TEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRTF 721 VK DMEKSVPMDRVI GDVGYGK E+AVRAAFKAVQDGKQVAVLVPTTLLA QH TF Sbjct: 641 DAVKEDMEKSVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTF 700 Query: 722 TERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVVD 781 ERM GFPVT+KGLSRFT AESR ++ GLA GSVDIVIGTHRLLQTGV WK+LGLV+VD Sbjct: 701 EERMTGFPVTIKGLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVD 760 Query: 782 EEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 841 EEQ FGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREM+T+LTPPE+R+P+LTY Sbjct: 761 EEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTY 820 Query: 842 VGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPEDL 901 VGP++DKQVAA++RRELLRDGQ F++HN+V+ I + A + LVPEARVVVAHGQM E+L Sbjct: 821 VGPYEDKQVAASIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPEARVVVAHGQMSEEL 880 Query: 902 LETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHER 961 LE T++GFW+REYD+LVCTTIVETGLDI NANTL+VE A GLSQLHQLRGRVGRS ER Sbjct: 881 LEQTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRER 940 Query: 962 GYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAG 1021 GYAYFLYP A LTE++YDRL TIAQNN+LGAGMAVA+KDLE+RGAGNVLG EQSGH+AG Sbjct: 941 GYAYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAG 1000 Query: 1022 VGFDLYVRLVGEAVEAYRAVADGKTAI-TPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 VGFDLYVRLVGEAVEAYRA+ADGK T + PK++R+DLPVDAH+P YI ++RLRLE Sbjct: 1001 VGFDLYVRLVGEAVEAYRALADGKVVDGTVKGPKEIRVDLPVDAHIPEKYINAERLRLEI 1060 Query: 1081 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM 1140 YR+LA + S+ ++ V+E+ DRYG +PE +RL+AV++LR L R + + ++ A + + Sbjct: 1061 YRKLAQSESEVDLRLAVEEMEDRYGPIPEEVERLLAVSRLRHLMREAHLTDI-AVQGTRI 1119 Query: 1141 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA 1200 ++ P+ L DS QVRLKR++PGA YRA A +Q+ P+ G+ + P +RDV+L+Q VA Sbjct: 1120 KVHPVDLADSQQVRLKRLFPGATYRAAAKAIQLSFPKTGNK---VTDPLLRDVDLLQWVA 1176 Query: 1201 DLITALQGLPRKVIGITGPEP 1221 + I+ + L + I + GP+P Sbjct: 1177 NFISNMFNL--EEIDVRGPQP 1195 >tr|C5VBF1|C5VBF1_9CORY Tax_Id=553207 (mfd)SubName: Full=Transcription-repair coupling factor; EC=3.6.1.-;[Corynebacterium matruchotii ATCC 14266] Length = 1238 Score = 1264 bits (3270), Expect = 0.0 Identities = 680/1227 (55%), Positives = 847/1227 (69%), Gaps = 44/1227 (3%) Query: 3 APGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPL 62 AP A ++GL++ A T P L+ G L +A AR + ALA PL Sbjct: 7 APTAATTPAMLSGLLKTAATDPKLKGLISHVGD--PTLSIATIDQARPWAIGALAHHTPL 64 Query: 63 LVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPD 122 LVVTATGREA +LTAEL+ ++G VA FP+WETLPHERLSP D G R +L LA+ Sbjct: 65 LVVTATGREAEDLTAELKAMWGDQVAWFPAWETLPHERLSPAADVAGTRAKILHNLAN-- 122 Query: 123 DARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMV 182 L++VVTA R + QP+ +P+TL+VG + F + LV AY VD+V Sbjct: 123 -------LRIVVTAARGVCQPILETNPGRDPLTLTVGHDYDFTDLTHHLVFKAYKHVDLV 175 Query: 183 GRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIAC 242 RRGEFA RGGI+DIF T EHP+R EFWGDE+T++R FSV DQR+ P++ + Sbjct: 176 ARRGEFATRGGIIDIFPTTGEHPIRAEFWGDELTDLRAFSVADQRAFPDLDYPAVDVYPA 235 Query: 243 RELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCP 302 RELL++DDV E P + ++L K+A+ IP DGMEAL+PVL Sbjct: 236 RELLITDDVAGRAAELAVAHR-----ENPTLQ----ELLTKVADRIPADGMEALIPVLAD 286 Query: 303 ---DDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVD 359 L + A T V+ PEK+R + ADL TD FL A W AA+GA A PVD Sbjct: 287 LTATPMRTLPELMPAGTHVVAVHPEKIRTRIADLQATDAEFLAAGWEAAAMGA--AGPVD 344 Query: 360 VEQL--YGSGFVELGDVQAAAIRSGHPWWTLSQ--LSDESALELDIRAAPSTRGHQHAID 415 L S + + A ++G WW+++ + E AL L+ P+ RG I Sbjct: 345 SRDLDLSASSYRSYDSLVVGATKAGQSWWSVTPPGMGGEDALPLEFEPGPTPRGDLSQIG 404 Query: 416 GIFAMLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXX 475 + ++L AH GG AA + P G R+V+R E I Sbjct: 405 EMMSLLLAHTMAGGRAAFIAPAPGAIKRMVDRFREQGIAAAVAQPGAEPQPGEVTLYQAL 464 Query: 476 XXXXXXXXXX--IPGAN---LVIITEADLTGSRATPVEG-KRLAAKRRSAADPLALTAGD 529 +PGA LV++TE D+TG+R + G KR A+RR DPLAL +GD Sbjct: 465 SHAGLVFPKVRKLPGAEALPLVVVTETDVTGNRVGDIAGAKRRQARRRHRVDPLALKSGD 524 Query: 530 LVVHDQHGIGRFVEMVERTVG----GARREYLVLEYASNKKSKQADKLYVPMDSLDQLSR 585 VVH+ HGIGRFV M ERT+ +RREY+VLEYA ++ + AD+LYVPMDSLD LSR Sbjct: 525 YVVHETHGIGRFVRMTERTITMGEETSRREYIVLEYAPTRRGQPADQLYVPMDSLDLLSR 584 Query: 586 YVGGQAPALSRLGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEM 645 YVGG+ P LS++GGSDW NTK KAR AVREIA ELV LYAKR +PGHAF PD+PWQ E+ Sbjct: 585 YVGGEKPTLSKMGGSDWKNTKKKARAAVREIASELVELYAKRATAPGHAFAPDSPWQQEL 644 Query: 646 EDAFGFTETVDQLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVA 705 ED F F ET DQ+ AI VK DME+ VPMDRVI GDVGYGK E+AVRAAFKAVQDGKQVA Sbjct: 645 EDNFPFVETEDQMAAIAAVKQDMEQPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVA 704 Query: 706 VLVPTTLLADQHLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRL 765 VLVPTTLLA QHL TF ERMAGFPVT+KGLSRFT A++++ ++ GL +GSVDIVIGTHRL Sbjct: 705 VLVPTTLLAQQHLATFAERMAGFPVTIKGLSRFTSASDAKEILSGLRDGSVDIVIGTHRL 764 Query: 766 LQTGVCWKDLGLVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREM 825 LQTGV WK LGLVVVDEEQ FGVEHKEHIK++R+HVDVLTMSATPIPRTLEMS+AGIREM Sbjct: 765 LQTGVQWKQLGLVVVDEEQRFGVEHKEHIKAMRSHVDVLTMSATPIPRTLEMSMAGIREM 824 Query: 826 STILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLV 885 STILTPPE+R+P+LTYVG ++KQ+AAA+RRELLRDGQ F+VHN+VS I + A + LV Sbjct: 825 STILTPPEDRHPILTYVGAQEEKQIAAAIRRELLRDGQVFFVHNKVSDIEKKARELRNLV 884 Query: 886 PEARVVVAHGQMPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGL 945 PEAR+VVAHGQM E++LE T++GFW+REYD+LVCTTIVETGLDI NANTL+VE A GL Sbjct: 885 PEARIVVAHGQMSEEVLERTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGL 944 Query: 946 SQLHQLRGRVGRSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIR 1005 SQLHQLRGRVGRS RGYAYFLYP LTE +YDRL TIAQNN+LGAGMAVA+KDLE+R Sbjct: 945 SQLHQLRGRVGRSRSRGYAYFLYPKGTTLTETSYDRLATIAQNNDLGAGMAVAMKDLEMR 1004 Query: 1006 GAGNVLGVEQSGHVAGVGFDLYVRLVGEAVEAYRAVADGKTAI-TPEEPKDVRIDLPVDA 1064 GAGNVLG +QSGH+AGVGFDLYVRLVGEAV YRA+ADGK T + PK++RIDLPVDA Sbjct: 1005 GAGNVLGAQQSGHIAGVGFDLYVRLVGEAVATYRALADGKPVDGTDQSPKEIRIDLPVDA 1064 Query: 1065 HLPPDYIASDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLC 1124 H+P YI ++RLRLE Y++LAA++S+T++ +V+E+ DRYG +P+ A RL+AVA+LR L Sbjct: 1065 HIPESYINAERLRLEVYQKLAASTSETDIRLIVEEMEDRYGPIPQEASRLLAVARLRHLA 1124 Query: 1125 RGSGIIEVTAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGT 1184 R +GI ++ + +++ P+ L+DS QVRLKR++PGA YRA A +QV IP+AG+ T Sbjct: 1125 RQAGITDI-GVQGNRIKIHPVELLDSQQVRLKRLFPGATYRAVAKAIQVSIPKAGT---T 1180 Query: 1185 LGVPCIRDVELVQAVADLITALQGLPR 1211 + P +RDV+L+Q VAD ++A+ L + Sbjct: 1181 VTDPKLRDVDLIQWVADFLSAMFNLDK 1207 >tr|Q4JU44|Q4JU44_CORJK Tax_Id=306537 (mfd)SubName: Full=Transcription-repair coupling factor;[Corynebacterium jeikeium] Length = 1258 Score = 1260 bits (3261), Expect = 0.0 Identities = 697/1240 (56%), Positives = 839/1240 (67%), Gaps = 61/1240 (4%) Query: 13 IAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGREA 72 +AGL++ A +M G L + P A F LA+ PLLVVTATGR+A Sbjct: 28 LAGLLKAAAQDGKLRGMMTHLGE--GALHMQAPEGAWPFAVGTLAQRTPLLVVTATGRQA 85 Query: 73 SNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPLQV 132 +LT LR + G V +FPSWETLPHE+LSP V+TV R+ VLRRL D+ LQV Sbjct: 86 QDLTTVLRYMLGDRVELFPSWETLPHEKLSPAVETVSTRMRVLRRLHEGDEN-----LQV 140 Query: 133 VVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVRG 192 VV R+ +QP+ + LG V PV L VG+EI F+ + RL EL YT VD+VG+RG FA+RG Sbjct: 141 VVAPTRAAVQPVQSNLGEVTPVRLKVGEEIDFDSLTHRLQELGYTHVDVVGKRGHFAIRG 200 Query: 193 GILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDVX 252 GI+DIF T E PVRV+FWGDEITE+R FSV DQR+IP + D ++ ACREL+++D+V Sbjct: 201 GIVDIFPATEEMPVRVDFWGDEITEVRAFSVGDQRTIPGVEPDQVMVYACRELIVTDEVA 260 Query: 253 XXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLTDQF 312 +E A + + ++L K+++ I V GME+L+P L + L + Sbjct: 261 SKAKNL---------AQEHAGNAELAEILDKISQKIQVQGMESLIPALHTAELVALPELM 311 Query: 313 AADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFVELG 372 T L+ P V +A DL +T + FLEA W VAA+G +AP++ G ++ + Sbjct: 312 PEGTHTLVMAPAAVERRAHDLRETGQQFLEAGWDVAAMGG--SAPME-----GVAYLSID 364 Query: 373 DVQAAAIRSGHPWWTLSQLS-------DESALELDIRAAPSTRGHQHAIDGIFAMLRAHV 425 VQ + G PWWTLS L LEL+ +AP G AI + + +R V Sbjct: 365 AVQKVQQKLGRPWWTLSTLGMADFDADTSDVLELNYDSAPRPHGEMEAIGAVMSDIRKRV 424 Query: 426 ATGGYAAIVTPGTGTAHRVVERLAES---------DIXXXXXXXXXXXXXXXXXXXXXXX 476 +GG A P A R++ R E+ D+ Sbjct: 425 ESGGRVAFAAPTPAVAARMLRRFQEAGIAAEAIGVDLSGSRGLGRIKKSKHTTADEPAPH 484 Query: 477 XXXXXXXXXIPGA-----------NLVIITEADLTGSRA-TPVEGKRLAAKRRSAADPLA 524 G +L+ TE DLTG+R GKR AK+R+ DPLA Sbjct: 485 QVSIYHAVAYEGLVFPFAGDDKRPSLLFFTETDLTGNRVDAKATGKRKPAKKRNRVDPLA 544 Query: 525 LTAGDLVVHDQHGIGRFVEMVERTVG----GARREYLVLEYASNKKSKQADKLYVPMDSL 580 L GDLVVHD HGIG+FV+M ERTVG +RREYLVLEYA +K+ D+LYVPMD L Sbjct: 545 LEPGDLVVHDSHGIGKFVKMTERTVGKGPDASRREYLVLEYAPSKRGGPGDQLYVPMDQL 604 Query: 581 DQLSRYVGGQAPALSRLGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTP 640 D LSRYVGG+ PALS++GG+DW NTK KAR AVREIAGELV LYA RQA+PG+AF DTP Sbjct: 605 DMLSRYVGGEKPALSKMGGADWKNTKRKARGAVREIAGELVQLYASRQAAPGYAFAADTP 664 Query: 641 WQAEMEDAFGFTETVDQLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQD 700 WQ EMEDAF FTET DQ AI VK DMEK VPMDRVI GDVGYGK E+AVRAAFKAVQ Sbjct: 665 WQREMEDAFPFTETEDQYNAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQS 724 Query: 701 GKQVAVLVPTTLLADQHLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVI 760 GKQVAVLVPTTLLA QH TF+ERM FP T+K LSRFT AES+ VI G+A+G+VDIVI Sbjct: 725 GKQVAVLVPTTLLAQQHYNTFSERMQDFPTTIKELSRFTTPAESKKVIAGMADGTVDIVI 784 Query: 761 GTHRLLQTGVCWKDLGLVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLA 820 GTHRLLQTGV WK+LGL++VDEEQ FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMS+A Sbjct: 785 GTHRLLQTGVHWKNLGLIIVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMA 844 Query: 821 GIREMSTILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAAR 880 GIREMSTILTPPE+R+PVLTYVG +DK VAAA+RRELLRDGQ FYVHN+V SI Q AA Sbjct: 845 GIREMSTILTPPEDRHPVLTYVGAQEDKHVAAAIRRELLRDGQVFYVHNKVRSIEQTAAD 904 Query: 881 VCGLVPEARVVVAHGQMPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERA 940 + LVPEARVVVAHGQM E+ LETT++GFW+RE+D+LVCTTIVETGLDI NANTL+VE A Sbjct: 905 IRRLVPEARVVVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVETGLDIANANTLIVENA 964 Query: 941 DTFGLSQLHQLRGRVGRSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALK 1000 GLSQLHQLRGRVGRS ERGYAYFLYP LTE +YDRL TIAQNN+LGAGMAVA+K Sbjct: 965 HHMGLSQLHQLRGRVGRSRERGYAYFLYPKGEVLTETSYDRLTTIAQNNDLGAGMAVAMK 1024 Query: 1001 DLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVGEAVEAYRAVADGKTAI-TPEEPKDVRID 1059 DLE+RGAGNVLG EQSGH+AGVGFDLYVRLVGEAVEA+RA+ADGK EE K++RID Sbjct: 1025 DLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFRAMADGKPVDGREEEKKEIRID 1084 Query: 1060 LPVDAHLPPDYIASDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQ 1119 LPVDAH+P +YIAS+RLRLE YR+ A + ++ V++EL DRYG PE Q L +++ Sbjct: 1085 LPVDAHIPAEYIASERLRLEAYRKFAEVQDEEQIEKVLEELRDRYGKPPEQIQMLAVLSR 1144 Query: 1120 LRLLCRGSGIIEVTAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAG 1179 LRLLCR + EV + S + SPI L DS QVRLKR++P A YRAT V +P P+ G Sbjct: 1145 LRLLCRDLQVTEVVT-TGSKISFSPIELQDSTQVRLKRLFPAANYRATTKIVLIPAPKRG 1203 Query: 1180 SSGGTLGVPCIRDVELVQAVADLITALQGLP-RKVIGITG 1218 G VP +RD ELVQ AD +T L G+P R + G G Sbjct: 1204 Q--GMRAVP-LRDTELVQWCADALTQLAGIPIRNMAGGAG 1240 >tr|C8RQD1|C8RQD1_CORJE Tax_Id=525262 (mfd)SubName: Full=Transcription-repair coupling factor;[Corynebacterium jeikeium ATCC 43734] Length = 1243 Score = 1260 bits (3260), Expect = 0.0 Identities = 694/1231 (56%), Positives = 836/1231 (67%), Gaps = 60/1231 (4%) Query: 13 IAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGREA 72 +AGL++ A +M G L + P A F LA+ PLLVVTATGR+A Sbjct: 21 LAGLLKAAAQDGKLRGMMTHLGE--GGLHMQAPEGAWPFAVGTLAQRTPLLVVTATGRQA 78 Query: 73 SNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPLQV 132 +LT LR + G V +FPSWETLPHE+LSP V+TV R+ VLRRL D+ LQV Sbjct: 79 QDLTTVLRYMLGDRVELFPSWETLPHEKLSPAVETVSTRMRVLRRLHEGDEN-----LQV 133 Query: 133 VVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVRG 192 VV R+ +QP+ + LG V PV L VG+EI F+ + RL EL YT VD+VG+RG FA+RG Sbjct: 134 VVAPTRAAVQPVQSNLGEVTPVRLKVGEEIDFDSLTHRLQELGYTHVDVVGKRGHFAIRG 193 Query: 193 GILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDVX 252 GI+DIF T E PVRV+FWGDEITE+R FSV DQR+IP + D ++ ACREL+++D+V Sbjct: 194 GIVDIFPATEEMPVRVDFWGDEITEVRAFSVGDQRTIPGVEPDQVMVYACRELIVTDEVA 253 Query: 253 XXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLTDQF 312 +E A + + ++L K+++ I V GME+L+P L + L + Sbjct: 254 SKAKNL---------AQEHAGNAELAEILDKISQKIQVQGMESLIPALHTAELVALPELM 304 Query: 313 AADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFVELG 372 T L+ P V +A DL +T + FLEA W VAA+G +AP++ G ++ + Sbjct: 305 PEGTHTLVMAPAAVERRAHDLRETGQQFLEAGWDVAAMGG--SAPME-----GVAYLSID 357 Query: 373 DVQAAAIRSGHPWWTLSQLS-------DESALELDIRAAPSTRGHQHAIDGIFAMLRAHV 425 VQ + G PWWTLS L LEL+ +AP G AI + + +R V Sbjct: 358 AVQKVQQKLGRPWWTLSTLGMADFDADTSDVLELNYDSAPRPHGEMEAIGALMSDIRKRV 417 Query: 426 ATGGYAAIVTPGTGTAHRVVERLAES---------DIXXXXXXXXXXXXXXXXXXXXXXX 476 +GG A P A R++ R E+ D+ Sbjct: 418 ESGGRVAFAAPTPAVAARMLRRFQEAGIAAEAIGVDLSGSRGLGRIKKSKHTTADEPAPH 477 Query: 477 XXXXXXXXXIPGA-----------NLVIITEADLTGSRA-TPVEGKRLAAKRRSAADPLA 524 G +L+ TE DLTG+R GKR AK+R+ DPLA Sbjct: 478 QVSIYHAVAYEGLVFPFTGDDKRPSLLFFTETDLTGNRVDAKATGKRKPAKKRNRVDPLA 537 Query: 525 LTAGDLVVHDQHGIGRFVEMVERTVG----GARREYLVLEYASNKKSKQADKLYVPMDSL 580 L +GDLVVHD HGIG+FV+M ERTVG +RREYLVLEYA +K+ D+LYVPMD L Sbjct: 538 LESGDLVVHDSHGIGKFVKMTERTVGKGPDASRREYLVLEYAPSKRGGPGDQLYVPMDQL 597 Query: 581 DQLSRYVGGQAPALSRLGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTP 640 D LSRYVGG+ PALS++GG+DW NTK KAR AVREIAGELV LYA RQA+PG+AF DTP Sbjct: 598 DMLSRYVGGEKPALSKMGGADWKNTKRKARGAVREIAGELVQLYASRQAAPGYAFAADTP 657 Query: 641 WQAEMEDAFGFTETVDQLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQD 700 WQ EMEDAF FTET DQ AI VK DMEK VPMDRVI GDVGYGK E+AVRAAFKAVQ Sbjct: 658 WQREMEDAFPFTETEDQYNAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQS 717 Query: 701 GKQVAVLVPTTLLADQHLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVI 760 GKQVAVLVPTTLLA QH TF+ERM FP T+K LSRFT AES+ VI G+A+G+VDIVI Sbjct: 718 GKQVAVLVPTTLLAQQHYNTFSERMQDFPTTIKELSRFTTPAESKKVIAGMADGTVDIVI 777 Query: 761 GTHRLLQTGVCWKDLGLVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLA 820 GTHRLLQTGV WK+LGL++VDEEQ FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMS+A Sbjct: 778 GTHRLLQTGVHWKNLGLIIVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMA 837 Query: 821 GIREMSTILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAAR 880 GIREMSTILTPPE+R+PVLTYVG +DK VAAA+RRELLRDGQ FYVHN+V SI Q AA Sbjct: 838 GIREMSTILTPPEDRHPVLTYVGAQEDKHVAAAIRRELLRDGQVFYVHNKVRSIEQTAAD 897 Query: 881 VCGLVPEARVVVAHGQMPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERA 940 + LVPEARVVVAHGQM E+ LETT++GFW+RE+D+LVCTTIVETGLDI NANTL+VE A Sbjct: 898 IRRLVPEARVVVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVETGLDIANANTLIVENA 957 Query: 941 DTFGLSQLHQLRGRVGRSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALK 1000 GLSQLHQLRGRVGRS ERGYAYFLYP LTE +YDRL TIAQNN+LGAGMAVA+K Sbjct: 958 HHMGLSQLHQLRGRVGRSRERGYAYFLYPKGEVLTETSYDRLTTIAQNNDLGAGMAVAMK 1017 Query: 1001 DLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVGEAVEAYRAVADGKTAI-TPEEPKDVRID 1059 DLE+RGAGNVLG EQSGH+AGVGFDLYVRLVGEAVEA+RA+ADGK EE K++RID Sbjct: 1018 DLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFRAMADGKPVDGREEEKKEIRID 1077 Query: 1060 LPVDAHLPPDYIASDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQ 1119 LPVDAH+P +YIAS+RLRLE YR+ A + ++ V++EL DRYG PE Q L +++ Sbjct: 1078 LPVDAHIPAEYIASERLRLEAYRKFAEVQDEEQIEKVLEELHDRYGKPPEQIQMLAVLSR 1137 Query: 1120 LRLLCRGSGIIEVTAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAG 1179 LRLLCR + EV + S + SPI L DS QVRLKR++P A YRAT V +P P+ G Sbjct: 1138 LRLLCRDLQVTEVVT-TGSKISFSPIELQDSTQVRLKRLFPAANYRATTKIVLIPAPKRG 1196 Query: 1180 SSGGTLGVPCIRDVELVQAVADLITALQGLP 1210 G VP +RD ELVQ AD +T L G+P Sbjct: 1197 Q--GMRAVP-LRDTELVQWCADALTQLAGIP 1224 >tr|C0E7P9|C0E7P9_9CORY Tax_Id=566549 SubName: Full=Putative uncharacterized protein;[Corynebacterium matruchotii ATCC 33806] Length = 1223 Score = 1259 bits (3258), Expect = 0.0 Identities = 675/1217 (55%), Positives = 844/1217 (69%), Gaps = 44/1217 (3%) Query: 13 IAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGREA 72 ++GL++ A T P L+ G L +A A+ + ALA PLLVVTATGREA Sbjct: 2 LSGLLKTAATDPKLKGLISHVGD--PTLSIATIDQAQPWAIGALAHHTPLLVVTATGREA 59 Query: 73 SNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPLQV 132 +LTAEL+ ++G VA FP+WETLPHERLSP D G R +L LA+ L++ Sbjct: 60 EDLTAELKAMWGDQVAWFPAWETLPHERLSPAADVAGTRAKILHNLAN---------LRI 110 Query: 133 VVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVRG 192 VVTA R + QP+ +P+TL+VG + F + LV AY VD+V RRGEFA RG Sbjct: 111 VVTAARGVCQPILETTPGRDPLTLTVGHDYDFTDLTHHLVFKAYKHVDLVARRGEFATRG 170 Query: 193 GILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDVX 252 GI+DIF T EHP+R EFWGDE+T++R FSV DQR+ P++ T+ RELL++D+V Sbjct: 171 GIIDIFPTTGEHPIRAEFWGDELTDLRAFSVADQRAFPDLDYPTVDVYPARELLITDNVA 230 Query: 253 XXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCP---DDYALLT 309 E P + ++L K+A+ IP DGMEAL+PVL L Sbjct: 231 GRAAELAVAHR-----ENPTLQ----ELLTKIADRIPADGMEALIPVLADLTATPMRTLP 281 Query: 310 DQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQL--YGSG 367 + A T V+ PEK+R + ADL TD FL A W AA+GA A PVD L S Sbjct: 282 ELMLAGTHVVAVHPEKIRTRIADLQATDAEFLAAGWEAAAMGA--AGPVDSRDLDLSASS 339 Query: 368 FVELGDVQAAAIRSGHPWWTLSQ--LSDESALELDIRAAPSTRGHQHAIDGIFAMLRAHV 425 + + A ++G WW+++ + E AL L+ P+ RG I + ++L AH Sbjct: 340 YRSYDSLVLGATKAGQSWWSITPPGMGGEDALPLEFEPGPTPRGDLSQIGEMMSLLLAHT 399 Query: 426 ATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 485 GG AA + P G R+ +R E I Sbjct: 400 MAGGRAAFIAPAPGAIKRMADRFREQGIAATVAQPGAEPQPGEVTLYQALSHAGLVFPKV 459 Query: 486 --IPGAN---LVIITEADLTGSRATPVEG-KRLAAKRRSAADPLALTAGDLVVHDQHGIG 539 +PGA LV++TE D+TG+R + G KR A+RR DPLAL +GD VVH+ HGIG Sbjct: 460 RKLPGAEALPLVVVTETDVTGNRVGDIAGAKRRQARRRHRVDPLALKSGDYVVHETHGIG 519 Query: 540 RFVEMVERTVG----GARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALS 595 RFV M ERT+ +RREY+VLEYA ++ + AD+LYVPMDSLD LSRYVGG+ P LS Sbjct: 520 RFVRMTERTITMGEETSRREYIVLEYAPTRRGQPADQLYVPMDSLDLLSRYVGGEKPTLS 579 Query: 596 RLGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETV 655 ++GGSDW NTK KAR AVREIA ELV LYAKR +PGHAF PD+PWQ E+ED F F ET Sbjct: 580 KMGGSDWKNTKKKARAAVREIASELVELYAKRATAPGHAFAPDSPWQQELEDNFPFVETE 639 Query: 656 DQLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLAD 715 DQ+ AI VK DME+ VPMDRVI GDVGYGK E+AVRAAFKAVQDGKQVAVLVPTTLLA Sbjct: 640 DQMAAIAAVKQDMEQPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQ 699 Query: 716 QHLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDL 775 QHL TF ERMAGFPVT++GLSRFT A++++ ++ GL +GSVDIVIGTHRLLQTGV WK L Sbjct: 700 QHLATFAERMAGFPVTIRGLSRFTSASDAKEILSGLRDGSVDIVIGTHRLLQTGVQWKQL 759 Query: 776 GLVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER 835 GLVVVDEEQ FGVEHKEHIK++R+HVDVLTMSATPIPRTLEMS+AGIREMSTILTPPE+R Sbjct: 760 GLVVVDEEQRFGVEHKEHIKAMRSHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDR 819 Query: 836 YPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHG 895 +P+LTYVG ++KQ+AAA+RRELLRDGQ F+VHN+VS I + A + LVPEAR+VVAHG Sbjct: 820 HPILTYVGAQEEKQIAAAIRRELLRDGQVFFVHNKVSDIEKKARELRNLVPEARIVVAHG 879 Query: 896 QMPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRV 955 QM E++LE T++GFW+REYD+LVCTTIVETGLDI NANTL+VE A GLSQLHQLRGRV Sbjct: 880 QMSEEVLERTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRV 939 Query: 956 GRSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQ 1015 GRS RGYAYFLYP LTE +YDRL TIAQNN+LGAGMAVA+KDLE+RGAGNVLG +Q Sbjct: 940 GRSRSRGYAYFLYPKGTTLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQ 999 Query: 1016 SGHVAGVGFDLYVRLVGEAVEAYRAVADGKTAI-TPEEPKDVRIDLPVDAHLPPDYIASD 1074 SGH+AGVGFDLYVRLVGEAV YRA+ADGK T + PK++RIDLPVDAH+P YI ++ Sbjct: 1000 SGHIAGVGFDLYVRLVGEAVATYRALADGKPVDGTDQSPKEIRIDLPVDAHIPESYINAE 1059 Query: 1075 RLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTA 1134 RLRLE YR+LAA++S+T++ +V+E+ DRYG +P+ A RL+AVA+LR L R +GI ++ Sbjct: 1060 RLRLEVYRKLAASTSETDIRLIVEEMEDRYGPIPQEASRLLAVARLRHLARQAGITDI-G 1118 Query: 1135 PSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVE 1194 + +++ P+ L+DS QVRLKR++PGA YRA A +QV IP+AG+ T+ P +RDV+ Sbjct: 1119 VHGNRIKIHPVELLDSQQVRLKRLFPGATYRAVAKAIQVSIPKAGT---TVTDPKLRDVD 1175 Query: 1195 LVQAVADLITALQGLPR 1211 L+Q VAD ++A+ L + Sbjct: 1176 LIQWVADFLSAMFNLDK 1192 >tr|C4LHL4|C4LHL4_CORK4 Tax_Id=645127 SubName: Full=Transcription-repair coupling factor;[Corynebacterium kroppenstedtii] Length = 1281 Score = 1248 bits (3230), Expect = 0.0 Identities = 683/1240 (55%), Positives = 843/1240 (67%), Gaps = 47/1240 (3%) Query: 12 PIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGRE 71 P+AG+V+LAL +P ++ G L ++ AR +VA A+A +++VTAT RE Sbjct: 41 PLAGVVQLALQSPKLQGVLASVGE--PRLHISAIDEARSWVARAIAEKSVVVIVTATSRE 98 Query: 72 ASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPLQ 131 A +LTAELR + G AVAMFP+WETLPHERLSPG +TVGARL VLRRLAHP D P++ Sbjct: 99 AQDLTAELRDMMGDAVAMFPAWETLPHERLSPGSETVGARLKVLRRLAHPHDIPGEQPIR 158 Query: 132 VVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVR 191 +VV RS +QP+ LG EP+ L+ ++ + RL E+ Y VD+VG+RGEFAVR Sbjct: 159 IVVAPARSFIQPIMKGLGEREPIILA--EDTDVTGIATRLAEMGYQHVDLVGKRGEFAVR 216 Query: 192 GGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDV 251 GG++DIF TAE PVR E WGDEI+++R FSV DQR+I + CREL + D V Sbjct: 217 GGVVDIFPSTAELPVRAELWGDEISDLRAFSVGDQRTIENFDPGAVPVYPCRELRIDDAV 276 Query: 252 XXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLTDQ 311 A + ++ D L K++EG+ V+GME+L+PVL L ++ Sbjct: 277 RARAEKM---------ARTHASNATLADALTKISEGVAVEGMESLIPVLFDGPMVTLPEE 327 Query: 312 FAADTP-----VLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGA----DNAAPVDVE- 361 AA P VL+ PEKV+ +A DLI T + F++A W AA+GA D AA + E Sbjct: 328 VAAADPSVTTTVLVMSPEKVQRRADDLIATGKEFVKAGWEAAAMGAESPIDTAALAEAED 387 Query: 362 -----QLYGSGFVELGDVQAAAIRSGHPWWT------LSQLSDESALELDIRAAPSTRGH 410 + S + LG ++ A G WWT L S LELD P +G Sbjct: 388 GNDDLNVDQSAYRSLGAMEKTAEHHGLSWWTCAPPGFLGSAEASSTLELDFSTGPQPKGK 447 Query: 411 QHAIDGIFAMLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXX 470 ++ + L HVA GG +A R+ R E+ I Sbjct: 448 PGDVEKAMSELHDHVAHGGRLVFTALTPASAQRMSGRFREAGIGVTPDADPQNPSAPGKA 507 Query: 471 XXXXXXXXXXXXXXXIPGAN-LVIITEADLTGSRATPV-EGKRLAAKRRSAADPLALTAG 528 + A L+++ E D TG+R +G+R ++R+ DPL+L G Sbjct: 508 TVIRAVLHGGLVIPHVDDARPLLVVAETDFTGNRIVAYGDGRRRPWRKRNRVDPLSLNPG 567 Query: 529 DLVVHDQHGIGRFVEMVERTVG----GARREYLVLEYASNKKSKQADKLYVPMDSLDQLS 584 DLVVH+ HGIGRFV+M ERTVG RREY+VLEYA +K+ AD LYVPMDSLD LS Sbjct: 568 DLVVHETHGIGRFVKMQERTVGKGADATRREYMVLEYAPSKRGGAADHLYVPMDSLDLLS 627 Query: 585 RYVGGQAPALSRLGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAE 644 RYVGG+ P+LS++GGSDW NTK KAR AVR+IA +LV LYAKRQA+PG+AF PDTPWQ E Sbjct: 628 RYVGGENPSLSKMGGSDWKNTKKKARAAVRDIAADLVQLYAKRQAAPGYAFSPDTPWQRE 687 Query: 645 MEDAFGFTETVDQLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQV 704 MED F FTET DQ AI VK DMEK VPMDRVI GDVGYGK E+AVRAAFKAVQDGKQV Sbjct: 688 MEDNFPFTETEDQYNAIEAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQV 747 Query: 705 AVLVPTTLLADQHLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHR 764 +LVPTTLLA QH TF+ERM GFP+T++ LSRFT ++R V+ GLAEG VDIVIGTHR Sbjct: 748 VLLVPTTLLAQQHFATFSERMEGFPITIRQLSRFTTPKQAREVLTGLAEGQVDIVIGTHR 807 Query: 765 LLQTGVCWKDLGLVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIRE 824 LLQTGV WK+LGLV+VDEEQ FGVEHKEHIK+LR+HVD+LTMSATPIPRTLEMS+AGIR+ Sbjct: 808 LLQTGVQWKNLGLVIVDEEQRFGVEHKEHIKALRSHVDMLTMSATPIPRTLEMSMAGIRD 867 Query: 825 MSTILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGL 884 MSTILTPPE+R+PVLTYVG +DKQ+AAA+RRELLRDGQ FYVHNRV SI Q A + L Sbjct: 868 MSTILTPPEDRHPVLTYVGVQEDKQIAAAIRRELLRDGQVFYVHNRVRSIEQVAQHIREL 927 Query: 885 VPEARVVVAHGQMPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFG 944 VPEARVVVAHGQM ED LE T+ GFW+REYD+LVCTTIVETGLDI NANTL+VE A G Sbjct: 928 VPEARVVVAHGQMNEDQLENTVEGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMG 987 Query: 945 LSQLHQLRGRVGRSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEI 1004 L+QLHQLRGRVGRS ERGYAYFLYPP LTE +YDRL TIAQNN+LGAGMAVA+KDLE+ Sbjct: 988 LAQLHQLRGRVGRSRERGYAYFLYPPSQTLTETSYDRLSTIAQNNDLGAGMAVAMKDLEM 1047 Query: 1005 RGAGNVLGVEQSGHVAGVGFDLYVRLVGEAVEAYRAVADGKTAI-TPEEPKDVRIDLPVD 1063 RGAGNVLG EQSGH+AGVGFDLYVRLVGEAVEA++A+ADGK + +E K+ RID+ VD Sbjct: 1048 RGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFKAMADGKPIDGSDKENKETRIDINVD 1107 Query: 1064 AHLPPDYIASDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLL 1123 AH+P YIAS+RLRL YR LA A ++ + V EL+DRYG P+ RL+AVA+LR++ Sbjct: 1108 AHIPTSYIASERLRLAAYRDLAQAKNEEALQNVRAELVDRYGQPPQEIDRLLAVARLRMV 1167 Query: 1124 CRGSGIIEVTAPSA--STMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSS 1181 CR G+ +V A A + + SPI L DS +VRL R+YPGAQYRAT V VP P+ G Sbjct: 1168 CRECGVTDVVATGANKAAISFSPIELPDSGRVRLGRLYPGAQYRATTHNVVVPAPKKGRG 1227 Query: 1182 GGTLGVPCIRDVELVQAVADLITALQGLPRKVIGITGPEP 1221 + ++D EL+Q AD++T+L G P + + +G +P Sbjct: 1228 ---IRAQAVKDEELLQWCADVMTSLLGKPHREVA-SGVQP 1263 >tr|C3PFA1|C3PFA1_CORA7 Tax_Id=548476 (mfd)SubName: Full=Transcription-repair coupling factor;[Corynebacterium aurimucosum] Length = 1212 Score = 1241 bits (3210), Expect = 0.0 Identities = 669/1215 (55%), Positives = 833/1215 (68%), Gaps = 38/1215 (3%) Query: 13 IAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGREA 72 + GL+++A + P L + G A L + G AR + LA P+LVVTA+GREA Sbjct: 2 LGGLLKVAASDPKLKGLASQVGE--ASLHITGIDQARPWAIGTLAHHAPVLVVTASGREA 59 Query: 73 SNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPLQV 132 +LTAEL + G VA FP+WETLPHERLSP D VG R VL D QV Sbjct: 60 EDLTAELTAMLGDKVAYFPAWETLPHERLSPAADIVGKRARVL-------DLVGAGKAQV 112 Query: 133 VVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVRG 192 VVT+ R QP+ +++ P+ L DE +++ L AY VDMV +RGE+A RG Sbjct: 113 VVTSARGYCQPILSKVEGRAPIFLKEEDEHELSHILSELEFRAYKHVDMVAKRGEYATRG 172 Query: 193 GILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDVX 252 GILD+F T+++PVRVEFWGDEIT++R FSV DQR+IPEI V + REL ++++V Sbjct: 173 GILDVFPTTSDYPVRVEFWGDEITDIRQFSVADQRAIPEIEVGEVAIYPARELPITNEVA 232 Query: 253 XXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLTDQF 312 + ++ ++L K+ E IP +GMEA+L VL + L + Sbjct: 233 ARARELARKFGG---------NAALAELLTKVGEHIPAEGMEAVLAVLADVPFVTLPELL 283 Query: 313 AADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFVELG 372 AA T VLL PEK+R + ADL TD FL A W AA+GAD + S + Sbjct: 284 AAGTHVLLVAPEKIRTRIADLESTDAEFLAAGWEAAAMGADGPLAAEGLDTSASSYRSYE 343 Query: 373 DVQAAAIRSGHPWWTLSQ-----LSDESALELDIRAAPSTRGHQHAIDGIFAMLRAHVAT 427 ++ P WT + ++ L LD P+ RG ID + A L AH Sbjct: 344 SLETTCRNIEAPLWTFAPPGMFAAAESETLPLDFEPGPTPRGDITEIDAMMAQLLAHTTA 403 Query: 428 GGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-- 485 GG AA + P G R+VER AE I Sbjct: 404 GGRAAFIAPAQGAIKRMVERFAEKGIPTKVATPGWEPSPGEVTLYQALSHAGLVFPKVRK 463 Query: 486 ---IPGANLVIITEADLTGSRATPVEG-KRLAAKRRSAADPLALTAGDLVVHDQHGIGRF 541 LV+ITE DLTG+R + G KR AKRR+ DPLAL GD VVH+ HGIG+F Sbjct: 464 LKDAEALPLVVITETDLTGNRVGDIAGAKRRPAKRRNRVDPLALKQGDYVVHETHGIGKF 523 Query: 542 VEMVERTVGG----ARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRL 597 ++M ERTV +RREY+VLEYA++K+ + AD+L+VPMDSLD LS+Y GG+AP LS++ Sbjct: 524 LKMAERTVQSGDETSRREYIVLEYAASKRGQPADQLWVPMDSLDLLSKYTGGEAPTLSKM 583 Query: 598 GGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQ 657 GGSDW NTK KAR AVREIAGELV LYAKRQA+PGH FGPDTPWQAEMED F F ET DQ Sbjct: 584 GGSDWKNTKKKARAAVREIAGELVELYAKRQAAPGHQFGPDTPWQAEMEDNFPFVETEDQ 643 Query: 658 LTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQH 717 + AI VK DME +VPMDRV+ GDVGYGK E+AVRAAFKAVQDGKQVAVLVPTTLLA QH Sbjct: 644 MLAIDAVKEDMESTVPMDRVVVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQH 703 Query: 718 LRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGL 777 TF ERM GFPV ++ LSRFT A ES+ ++ GLA+GSVDIVIGTHRLLQTGV WK+LGL Sbjct: 704 ADTFRERMQGFPVDIEVLSRFTSAKESKEILAGLADGSVDIVIGTHRLLQTGVQWKNLGL 763 Query: 778 VVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYP 837 +VVDEEQ FGVEHKEHIK+L+ VDVLTMSATPIPRTLEMS+AGIREMSTILTPPE+R+P Sbjct: 764 IVVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHP 823 Query: 838 VLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQM 897 VLTYVG ++DKQVAAA+RRELLRDGQ F++HN+V+ I + A + LVPEAR+VVAHGQM Sbjct: 824 VLTYVGAYEDKQVAAAIRRELLRDGQVFFIHNKVADIEKKARELRDLVPEARIVVAHGQM 883 Query: 898 PEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGR 957 ED+LE T++GFW+RE+D+LVCTTIVETGLDI NANTL+VE A GLSQLHQLRGRVGR Sbjct: 884 NEDVLERTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGR 943 Query: 958 SHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSG 1017 S ERGYAYFLYP A LTE +YDRL TIAQNN+LGAGMAVA+KDLE+RGAGNVLG EQSG Sbjct: 944 SRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSG 1003 Query: 1018 HVAGVGFDLYVRLVGEAVEAYRAVADGKT-AITPEEPKDVRIDLPVDAHLPPDYIASDRL 1076 H+AGVGFDLYVRLVGEAVE ++A+A G+T +T E PK++RIDLPVDAH+P YI S+RL Sbjct: 1004 HIAGVGFDLYVRLVGEAVETFKALARGETPVVTDEGPKEIRIDLPVDAHIPESYINSERL 1063 Query: 1077 RLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPS 1136 RLE YR+LAA+ + ++A VV+E+ DRYG +PEP +RL+AVA+LR R +G+ ++T Sbjct: 1064 RLEVYRKLAASKENADLAHVVEEMQDRYGPVPEPVERLLAVARLRHQARRAGVSDITV-Q 1122 Query: 1137 ASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELV 1196 + +++ P+ L DS QVRLKR++PG+ YRA A +Q+ P+AG + + P +RD+EL+ Sbjct: 1123 GTRIKVHPVELADSKQVRLKRLFPGSNYRAAAKAIQLNFPKAGRN---VTDPKLRDIELL 1179 Query: 1197 QAVADLITALQGLPR 1211 Q +AD + ++ L R Sbjct: 1180 QWMADFLASMFELER 1194 >tr|B1VFK5|B1VFK5_CORU7 Tax_Id=504474 SubName: Full=Transcription-repair coupling factor;[Corynebacterium urealyticum] Length = 1249 Score = 1240 bits (3208), Expect = 0.0 Identities = 685/1258 (54%), Positives = 837/1258 (66%), Gaps = 60/1258 (4%) Query: 2 TAPGPACLDTP-IAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 +APG P ++G++ A L+ G A+L + GP F +A+ Sbjct: 14 SAPGNKGHAAPALSGVLRAAARDSKLKGLVTHVGA--AQLAIQGPDAVWPFAVGTIAQHA 71 Query: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 P+LV+TAT R+A +LT +L+ + G V + P+WETLPHER+SP V+TV R+ VLRRL Sbjct: 72 PVLVITATARQAEDLTEQLKAMLGDEVELMPAWETLPHERISPNVETVSQRMKVLRRLHR 131 Query: 121 PDDARLGPP---LQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYT 177 LG ++VVV VR+L+QP+ LG V PV +V E+ FE++ LVE Y+ Sbjct: 132 QTAGELGESDTHIRVVVAPVRTLVQPIQDSLGAVTPVHFAVDQEVDFEQIQHELVERGYS 191 Query: 178 RVDMVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTL 237 VD+V +RG FAVRGGILD+F T E PVRVEFWGDE++++R FSV DQR+IP + +D + Sbjct: 192 AVDVVAKRGHFAVRGGILDVFPATGELPVRVEFWGDEVSDIRPFSVGDQRTIPGVELDEV 251 Query: 238 VAIACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALL 297 RELL++D V +E A + DV K++E I V GMEAL+ Sbjct: 252 TVYPARELLITDSVATRAGQL---------AKEHASHAELADVYHKISEKIVVPGMEALI 302 Query: 298 PVLCPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAP 357 P L + LL + T ++ P V +AADL +T FLEA W AA+GA+ AP Sbjct: 303 PSLHDGELKLLPEFLPEGTHTIVLAPAAVERRAADLKETGEQFLEAGWEAAAMGAN--AP 360 Query: 358 VDVEQLYGSGFVELGDVQAAAIRSGHPWWTLSQLS--------DESALELDIRAAPSTRG 409 D G +V + + A PWWTLS L D AL LD AAP RG Sbjct: 361 AD-----GVAYVSVAAARHAQTALDRPWWTLSPLGMLDSDEGFDGDALLLDYDAAPQPRG 415 Query: 410 HQHAIDGIFAMLRAHVATGGYAAIVTPGTGTAHRVVERLAES---------DIXXXXXXX 460 AI+ + A +R V GG A P + A R++ R E+ D+ Sbjct: 416 EMEAIEHMMADIRTRVEAGGRVAFAAPTSTVAARMLRRFHEAGIAAEAVGVDLRGQRGIG 475 Query: 461 XXXXXXXXXXXXXXXXXXXXXXXXXIPGA----------NLVIITEADLTGSRA-TPVEG 509 G +L+ +TE D+TG+R G Sbjct: 476 RQAASKATPDQEPAPKKVSIYHAVAHEGLVFPMAGGEHPSLLFLTETDVTGNRVEAAATG 535 Query: 510 KRLAAKRRSAADPLALTAGDLVVHDQHGIGRFVEMVERTVG----GARREYLVLEYASNK 565 KR AKRR+ DPLAL GDLVVHD HGIG+FV+M ERTVG +RREYLVLEYA +K Sbjct: 536 KRKPAKRRNRVDPLALEPGDLVVHDSHGIGKFVKMTERTVGKGADASRREYLVLEYAPSK 595 Query: 566 KSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTKARCAVREIAGELVSLYA 625 + D+LYVPMD LD LSRYVGG+ PALS++GG+DW NTK KAR AVREIAGELV LYA Sbjct: 596 RGGPGDQLYVPMDQLDLLSRYVGGEKPALSKMGGADWKNTKRKARKAVREIAGELVQLYA 655 Query: 626 KRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEKSVPMDRVICGDVGYG 685 +RQA+PG+AF PD+PWQ EME+AF FTET DQ AI VK DMEK VPMDRVI GDVGYG Sbjct: 656 QRQAAPGYAFAPDSPWQREMEEAFPFTETEDQFNAIEAVKSDMEKPVPMDRVIVGDVGYG 715 Query: 686 KAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRTFTERMAGFPVTVKGLSRFTDAAESR 745 K E+AVRAAFKAVQ GKQVAVLVPTTLLA QH++TF +RM FP + LSRFT A+S+ Sbjct: 716 KTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHMKTFRDRMQDFPTRIAELSRFTTPAQSK 775 Query: 746 AVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVVDEEQWFGVEHKEHIKSLRTHVDVLT 805 ++ GLAEG++DIV+GTHRLLQTGV WK+LGL++VDEEQ FGVEHKEHIKSLRTHVDVLT Sbjct: 776 EILKGLAEGTIDIVVGTHRLLQTGVTWKNLGLIIVDEEQRFGVEHKEHIKSLRTHVDVLT 835 Query: 806 MSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAF 865 MSATPIPRTLEMS+AGIREMSTILTPP++R+PVLTYVG +DK VAAA+RRELLRDGQ F Sbjct: 836 MSATPIPRTLEMSMAGIREMSTILTPPQDRHPVLTYVGAQEDKHVAAAIRRELLRDGQVF 895 Query: 866 YVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPEDLLETTMRGFWNREYDILVCTTIVET 925 Y+HNRV SI +AA + LVPEARVVVAHGQM E+ LETT+ GFWNRE+DILVCTTIVET Sbjct: 896 YIHNRVKSIEKAAEHIRSLVPEARVVVAHGQMSEEQLETTVEGFWNREFDILVCTTIVET 955 Query: 926 GLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHERGYAYFLYPPQAPLTEIAYDRLVTI 985 GLDI NANTL+VE A GLSQLHQLRGRVGRS ER YAYFLYP LTE +YDRL TI Sbjct: 956 GLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERAYAYFLYPKGEVLTETSYDRLSTI 1015 Query: 986 AQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVGEAVEAYRAVADGK 1045 AQNNELGAGMAVA+KDLE+RGAGNVLG EQSGH+AGVGFDLYVRLVGEAVEA+RA+ADGK Sbjct: 1016 AQNNELGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFRAMADGK 1075 Query: 1046 TAI-TPEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDTEVAAVVDELIDRY 1104 EE K++RIDLPVDAH+P Y+AS+RLRLE YR+LA A + ++ V+ E DRY Sbjct: 1076 PVDGREEEKKEIRIDLPVDAHIPVTYVASERLRLEAYRKLAEAQDEDQIEEVLTEFRDRY 1135 Query: 1105 GALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTMRLSPIRLIDSAQVRLKRMYPGAQY 1164 G P L +++LRL+CR G+ EV A + S + SPI L DS QVRLKR++PGA Y Sbjct: 1136 GEPPAQVTNLAVLSRLRLVCRDLGVSEVVA-TGSRISFSPIDLQDSGQVRLKRLFPGATY 1194 Query: 1165 RATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVADLITALQGLPRKVIGITGPEPT 1222 RAT V +P P+ G+ + +RDV L Q A+ +T L G+P + I G PT Sbjct: 1195 RATTKVVVIPAPKEGAG---MRAVALRDVPLAQWCANALTQLAGIPERDIS-GGSAPT 1248 >tr|C2BQC5|C2BQC5_9CORY Tax_Id=525264 SubName: Full=Possible transcription-repair coupling factor;[Corynebacterium pseudogenitalium ATCC 33035] Length = 1213 Score = 1239 bits (3205), Expect = 0.0 Identities = 667/1227 (54%), Positives = 838/1227 (68%), Gaps = 43/1227 (3%) Query: 13 IAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGREA 72 +AGL+++A + P ++ G +L + G +R + ALA P+LVVTAT REA Sbjct: 6 LAGLLKVAASDPKLKGMISHVGE---DLHITGLDQSRPWALGALAHHAPVLVVTATSREA 62 Query: 73 SNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPLQV 132 +LTAEL + G VAMFPSWETLPHERLSPGVD +G R VL L LQV Sbjct: 63 EDLTAELTAMLGEKVAMFPSWETLPHERLSPGVDIIGRRAEVLHNL---------DSLQV 113 Query: 133 VVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVRG 192 +VTA R L QP+ ++ PV L E F+ V+ L AY VDMV +RGE+A RG Sbjct: 114 IVTAARGLSQPILQEVEGRAPVHLEEDHEYDFDEVVRELEFRAYKHVDMVAKRGEYATRG 173 Query: 193 GILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDVX 252 GI+DIF T ++PVRVEFWGDEIT++R FSV DQR+IPEI V + REL ++D + Sbjct: 174 GIIDIFPTTLDYPVRVEFWGDEITDIRQFSVADQRTIPEIEVGRVDIFPARELPITDAIA 233 Query: 253 XXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLTDQF 312 + P + ++ ++L K++E IP +GMEALLP L L + Sbjct: 234 KRAADLA--------VKHPG-NPALVELLTKVSEHIPAEGMEALLPALSDAPMITLPEFL 284 Query: 313 AADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFVELG 372 T V++ PEK+R + ADL KTD FL A W AA+GAD + S + Sbjct: 285 RPTTHVVMVGPEKIRRRVADLEKTDAEFLAAGWEAAAMGADGPLATEGLDTEASSYRSYE 344 Query: 373 DVQAAAIRSGHPWWTLSQ-----LSDESALELDIRAAPSTRGHQHAIDGIFAMLRAHVAT 427 ++ + S P WT S +E L L+ P+ RG+ ID + A L AH Sbjct: 345 SLEVSISESSLPLWTFSPPGMLAAPEEETLPLEFEPGPTPRGNIEEIDAMMAQLLAHTNA 404 Query: 428 GGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-- 485 GG AA + P G R+V+R AE I Sbjct: 405 GGRAAFIAPAQGAIKRMVDRFAEKGIRTKVATPGWEPTAGEVTLYQALSHAGLVFPKVKK 464 Query: 486 ---IPGANLVIITEADLTGSRATPV-EGKRLAAKRRSAADPLALTAGDLVVHDQHGIGRF 541 LV++TE DLTG+R + E KR AKRR+ DPLAL GD VVH+ HGIG+F Sbjct: 465 PKDAEALPLVVVTETDLTGNRVGDIAEAKRRPAKRRNKVDPLALKQGDFVVHETHGIGKF 524 Query: 542 VEMVERTVGG----ARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRL 597 ++M ERT+ +RREY+VLEYA +K+ + AD+L+VPMDSLD LS+Y GG++P LS++ Sbjct: 525 LKMAERTIQSGDETSRREYIVLEYAPSKRGQPADQLWVPMDSLDLLSKYTGGESPHLSKM 584 Query: 598 GGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQ 657 GGSDW NTK KAR AVREIAGELV LYAKRQA+PGH F PD PWQAEMED F F ET DQ Sbjct: 585 GGSDWKNTKKKARAAVREIAGELVELYAKRQAAPGHQFSPDNPWQAEMEDNFPFVETEDQ 644 Query: 658 LTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQH 717 + AI VK DME +VPMDRV+ GDVGYGK E+A+RAAFKAVQDG QVAVLVPTTLLA QH Sbjct: 645 MLAIDAVKHDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGMQVAVLVPTTLLAQQH 704 Query: 718 LRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGL 777 TF+ERM GFPV ++ LSRFT E++ + GLA+GSVDIV+GTHRLLQTGV WK+LGL Sbjct: 705 FDTFSERMTGFPVKIEVLSRFTSKKEAKDIFKGLADGSVDIVVGTHRLLQTGVHWKNLGL 764 Query: 778 VVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYP 837 +VVDEEQ FGVEHKEHIK+L+ VDVLTMSATPIPRTLEMS+AGIREMSTILTPPE+R+P Sbjct: 765 IVVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHP 824 Query: 838 VLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQM 897 VLTYVG ++DKQVAAA+RRELLRDGQ F++HN+VS I + A + LVPEARVVVAHGQM Sbjct: 825 VLTYVGAYEDKQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPEARVVVAHGQM 884 Query: 898 PEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGR 957 E++LE T++GFW+REYD+LVCTTIVETGLDI NANTL+VE A GLSQLHQLRGRVGR Sbjct: 885 NEEVLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGR 944 Query: 958 SHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSG 1017 S ERGYAYFLYP A LTE +YDRL TIAQNN+LGAGMAVA+KDLE+RGAGNVLG +QSG Sbjct: 945 SRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSG 1004 Query: 1018 HVAGVGFDLYVRLVGEAVEAYRAVADGKT-AITPEEPKDVRIDLPVDAHLPPDYIASDRL 1076 H+AGVGFDLYVRLVGEAVE ++++A G+ +T E PK++RIDLPVDAH+P YI S+RL Sbjct: 1005 HIAGVGFDLYVRLVGEAVETFKSLARGEAPTVTDEGPKEIRIDLPVDAHIPESYIDSERL 1064 Query: 1077 RLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPS 1136 RLE YR+LAA+ + ++ AV++E+ DR+G LP+ RL++VA+LR R +GI ++T Sbjct: 1065 RLEVYRKLAASQDNDDLKAVIEEMEDRFGPLPQEVLRLLSVARLRHQARRAGISDITV-Q 1123 Query: 1137 ASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELV 1196 + ++ P+ L DS QVRLKR+YPG+ +RA A + VP P+AG + + P +RD EL+ Sbjct: 1124 GTRIKFHPVELPDSKQVRLKRLYPGSSFRAAAKAINVPFPKAGRN---VTSPKLRDTELI 1180 Query: 1197 QAVADLITALQGLPRKVIGITGPEPTS 1223 Q AD ++AL + + I ++G +PTS Sbjct: 1181 QWAADFLSALFDV--EPINVSGAQPTS 1205 >tr|C0WFA9|C0WFA9_9CORY Tax_Id=525260 SubName: Full=Possible transcription-repair coupling factor;[Corynebacterium accolens ATCC 49725] Length = 1213 Score = 1238 bits (3203), Expect = 0.0 Identities = 669/1224 (54%), Positives = 836/1224 (68%), Gaps = 43/1224 (3%) Query: 13 IAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGREA 72 +AGL+++A T P L+ G +L + G AR + LA P+L VTAT REA Sbjct: 6 LAGLLKVAATDPKLKGLVANVGQ---DLHITGIDQARPWALGTLAHHAPVLAVTATSREA 62 Query: 73 SNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPLQV 132 +LTAEL + G VAMFPSWETLPHERLSPGVD +G R VL + DD L++ Sbjct: 63 EDLTAELTAMMGDKVAMFPSWETLPHERLSPGVDIIGKRAQVLHNI---DD------LRI 113 Query: 133 VVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVRG 192 +VTA R L QP+ + PV L E F+ V+ L AY VDMV +RGEFA RG Sbjct: 114 IVTAARGLSQPILQDIEGRAPVHLEEDHEYNFDDVVRSLEFRAYKHVDMVAKRGEFATRG 173 Query: 193 GILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDVX 252 GI+D+F T ++PVRVEFWGDE+T++R FSV DQR+IPEI V + REL ++D V Sbjct: 174 GIIDVFPTTLDYPVRVEFWGDEVTDIRQFSVADQRTIPEIEVGRVDIFTARELPITDAVA 233 Query: 253 XXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLTDQF 312 T PA+ ++L K++E IP +GMEA+LPVL L++ Sbjct: 234 QRAATLAATH-----TGNPAL----VELLTKVSEHIPAEGMEAVLPVLSDAPLITLSEFL 284 Query: 313 AADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFVELG 372 A T V++ PEK+R + DL KTD FL A W AA+GAD + GS + Sbjct: 285 PAATHVVMMAPEKIRRRVEDLEKTDAEFLAAGWEAAAMGADGPLSTEGLDTEGSSYRSFE 344 Query: 373 DVQAAAIRSGHPWWTLSQLS-----DESALELDIRAAPSTRGHQHAIDGIFAMLRAHVAT 427 ++ + +G P WT S +E L L+ P+ RG ID + A L AH Sbjct: 345 SLEVSIREAGQPLWTFSPPGMLAGPEEETLPLEFEPGPTPRGDIKEIDAMMAQLLAHTNA 404 Query: 428 GGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-- 485 GG AA + P G R+VER AE I Sbjct: 405 GGRAAFIAPAQGAIKRMVERFAEQGIRTKVATPGWEPSAGEVTLYQALSHAGLVFPKVRK 464 Query: 486 ---IPGANLVIITEADLTGSRATPV-EGKRLAAKRRSAADPLALTAGDLVVHDQHGIGRF 541 LV++TE DLTG+R + + KR AKRR+ DPLAL GD VVH+ HGIG+F Sbjct: 465 LKDAEALPLVVVTETDLTGNRVGDIADAKRRPAKRRNKVDPLALKQGDFVVHETHGIGKF 524 Query: 542 VEMVERTVGG----ARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRL 597 ++M ERT+ +RREY+VLEYA +K+ + AD+L+VPMDSLD LS+Y G ++P LS++ Sbjct: 525 LKMAERTIQSGDETSRREYIVLEYAPSKRGQPADQLWVPMDSLDLLSKYTGSESPHLSKM 584 Query: 598 GGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQ 657 GGSDW NTK KAR AVREIAGELV LYAKRQA+PGH F PD PWQAEMED F F ET DQ Sbjct: 585 GGSDWKNTKKKARAAVREIAGELVDLYAKRQAAPGHQFAPDNPWQAEMEDNFPFVETEDQ 644 Query: 658 LTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQH 717 + AI VK DME +VPMDRV+ GDVGYGK E+A+RAAFKAVQDG QVAVLVPTTLLA QH Sbjct: 645 MLAIDAVKEDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGTQVAVLVPTTLLAQQH 704 Query: 718 LRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGL 777 TF+ERMAGFPV + LSRFT E+ + GLA+GS+DIV+GTHRLLQTGV WK+LGL Sbjct: 705 FDTFSERMAGFPVKMAVLSRFTSKKEATEIFKGLADGSIDIVVGTHRLLQTGVHWKNLGL 764 Query: 778 VVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYP 837 +VVDEEQ FGVEHKEHIK+L+ VDVLTMSATPIPRTLEMS+AGIREMSTILTPPE+R+P Sbjct: 765 IVVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHP 824 Query: 838 VLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQM 897 VLTYVG ++DKQVAAA+RRELLRDGQ F++HN+VS I + A + LVPEAR+VVAHGQM Sbjct: 825 VLTYVGAYEDKQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPEARIVVAHGQM 884 Query: 898 PEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGR 957 ED+LE T++GFW+REYD+LVCTTIVETGLDI NANTL+VE A GLSQLHQLRGRVGR Sbjct: 885 NEDVLEKTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGR 944 Query: 958 SHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSG 1017 S ERGYAYFLYP A LTE +YDRL TIAQNN+LGAGMAVA+KDLE+RGAGNVLG +QSG Sbjct: 945 SRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSG 1004 Query: 1018 HVAGVGFDLYVRLVGEAVEAYRAVADGKT-AITPEEPKDVRIDLPVDAHLPPDYIASDRL 1076 H+AGVGFDLYVRLVGEAVEA++++A G+ A+T E PK++RIDLPVDAH+P YI S+RL Sbjct: 1005 HIAGVGFDLYVRLVGEAVEAFKSLARGEAPAVTDEGPKEIRIDLPVDAHIPESYIDSERL 1064 Query: 1077 RLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPS 1136 RLE YR+LAA+ + ++AA +E+ DR+G LP+ +RL+AVA+LR R +G+ ++T Sbjct: 1065 RLEVYRKLAASQDNKDLAAAREEMEDRFGPLPKEVERLLAVARLRHQARRAGVADITV-Q 1123 Query: 1137 ASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELV 1196 + ++ P+ L DS QVRLKR+YPG+ +RA A + VP P+AG + + P +RD EL+ Sbjct: 1124 GTRVKFHPVELPDSKQVRLKRLYPGSSFRAAAKAINVPFPKAGRN---VTSPKLRDEELI 1180 Query: 1197 QAVADLITALQGLPRKVIGITGPE 1220 Q AD ++AL + + I ++G E Sbjct: 1181 QWAADFLSALFDV--QPINVSGEE 1202 >tr|C6RB20|C6RB20_9CORY Tax_Id=553206 (mfd)SubName: Full=Transcription-repair coupling factor; EC=3.6.1.-;[Corynebacterium tuberculostearicum SK141] Length = 1212 Score = 1236 bits (3198), Expect = 0.0 Identities = 666/1227 (54%), Positives = 838/1227 (68%), Gaps = 43/1227 (3%) Query: 13 IAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGREA 72 +AGL+++A + P ++ G +L + G +R + LA P+LVVTAT REA Sbjct: 6 LAGLLKVAASDPKLKGMISHVGE---DLHITGLDQSRPWALGTLAHHAPVLVVTATSREA 62 Query: 73 SNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPLQV 132 +LTAEL + G VAMFP+WETLPHERLSPGVD +G R VL L LQV Sbjct: 63 EDLTAELTAMLGEKVAMFPAWETLPHERLSPGVDIIGRRAEVLHNL---------DSLQV 113 Query: 133 VVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVRG 192 +VTA R L QP+ ++ PV L E F+ V+ L AY VDMV +RGE+A RG Sbjct: 114 IVTAARGLSQPILQEVEGRAPVHLEEDHEYDFDEVVRELEFRAYKHVDMVAKRGEYATRG 173 Query: 193 GILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDVX 252 GI+DIF T ++PVRVEFWGDEIT++R FSV DQR+IPEI V + REL ++D + Sbjct: 174 GIIDIFPTTLDYPVRVEFWGDEITDIRQFSVADQRTIPEIEVGRVDIFPARELPITDAIA 233 Query: 253 XXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLTDQF 312 + P + ++ ++L K++E IP +GMEALLP L L + Sbjct: 234 KRAADLA--------VKHPG-NPALVELLTKVSELIPAEGMEALLPALSDAPMITLPEFL 284 Query: 313 AADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFVELG 372 T V++ PEK+R + ADL KTD FL A W AA+GAD + S + Sbjct: 285 RPTTHVVMVGPEKIRRRVADLEKTDAEFLAAGWEAAAMGADGPLATEGLDTEASSYRSYE 344 Query: 373 DVQAAAIRSGHPWWTLSQ-----LSDESALELDIRAAPSTRGHQHAIDGIFAMLRAHVAT 427 ++ + S P WT S +E L L+ P+ RG+ ID + A L AH Sbjct: 345 SLEVSISESSLPLWTFSPPGMLAAPEEETLPLEFEPGPTPRGNIEEIDAMMAQLLAHTNA 404 Query: 428 GGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIP 487 GG AA + P G R+V+R AE I Sbjct: 405 GGRAAFIAPAQGAIKRMVDRFAEKGIRTKVATPGWEPTAGEVTLYQALSHAGLVFPKVKK 464 Query: 488 GAN-----LVIITEADLTGSRATPV-EGKRLAAKRRSAADPLALTAGDLVVHDQHGIGRF 541 + LV++TE DLTG+R + E KR AKRR+ DPLAL GD VVH+ HGIG+F Sbjct: 465 PKDAEPLPLVVVTETDLTGNRVGDIAEAKRRPAKRRNKVDPLALKQGDFVVHETHGIGKF 524 Query: 542 VEMVERTVGG----ARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRL 597 ++M ERT+ +RREY+VLEYA +K+ + AD+L+VPMDSLD LS+Y GG++P LS++ Sbjct: 525 LKMAERTIQSGDETSRREYIVLEYAPSKRGQPADQLWVPMDSLDLLSKYTGGESPHLSKM 584 Query: 598 GGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQ 657 GGSDW NTK KAR AVREIAGELV LYAKRQA+PGH F PD PWQAEMED F F ET DQ Sbjct: 585 GGSDWKNTKKKARAAVREIAGELVELYAKRQAAPGHQFSPDNPWQAEMEDNFPFVETEDQ 644 Query: 658 LTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQH 717 + AI VK DME +VPMDRV+ GDVGYGK E+A+RAAFKAVQDG QVAVLVPTTLLA QH Sbjct: 645 MLAIDAVKHDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGMQVAVLVPTTLLAQQH 704 Query: 718 LRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGL 777 TF+ERM GFPV ++ LSRFT E++ + GLA+GSVDIV+GTHRLLQTGV WK+LGL Sbjct: 705 FDTFSERMTGFPVKIEVLSRFTSKKEAKDIFKGLADGSVDIVVGTHRLLQTGVHWKNLGL 764 Query: 778 VVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYP 837 +VVDEEQ FGVEHKEHIK+L+ VDVLTMSATPIPRTLEMS+AGIREMSTILTPPE+R+P Sbjct: 765 IVVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHP 824 Query: 838 VLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQM 897 VLTYVG ++DKQVAAA+RRELLRDGQ F++HN+VS I + A + LVPEARVVVAHGQM Sbjct: 825 VLTYVGAYEDKQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPEARVVVAHGQM 884 Query: 898 PEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGR 957 E++LE T++GFW+REYD+LVCTTIVETGLDI NANTL+VE A GLSQLHQLRGRVGR Sbjct: 885 NEEVLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGR 944 Query: 958 SHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSG 1017 S ERGYAYFLYP A LTE +YDRL TIAQNN+LGAGMAVA+KDLE+RGAGNVLG +QSG Sbjct: 945 SRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSG 1004 Query: 1018 HVAGVGFDLYVRLVGEAVEAYRAVADGKT-AITPEEPKDVRIDLPVDAHLPPDYIASDRL 1076 H+AGVGFDLYVRLVGEAVE ++++A G+ +T E PK++RIDLPVDAH+P YI S+RL Sbjct: 1005 HIAGVGFDLYVRLVGEAVETFKSLARGEAPTVTDEGPKEIRIDLPVDAHIPEGYIDSERL 1064 Query: 1077 RLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPS 1136 RLE YR+LAA+ +D ++ AV++E+ DR+G LP+ RL++VA+LR R +GI ++T Sbjct: 1065 RLEVYRKLAASQNDDDLKAVIEEMEDRFGPLPQEVLRLLSVARLRHQARRAGISDITV-Q 1123 Query: 1137 ASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELV 1196 + ++ P+ L DS QVRLKR+YPG+ +RA A + VP P+AG + + P +RD EL+ Sbjct: 1124 GTRVKFHPVELPDSKQVRLKRLYPGSSFRAAAKAINVPFPKAGRN---VTSPKLRDTELI 1180 Query: 1197 QAVADLITALQGLPRKVIGITGPEPTS 1223 Q AD ++AL + I ++G +PTS Sbjct: 1181 QWAADFLSALFDV--DPINVSGAQPTS 1205 >tr|C2CLV5|C2CLV5_CORST Tax_Id=525268 (mfd)SubName: Full=Transcription-repair coupling factor;[Corynebacterium striatum ATCC 6940] Length = 1220 Score = 1235 bits (3196), Expect = 0.0 Identities = 669/1212 (55%), Positives = 833/1212 (68%), Gaps = 40/1212 (3%) Query: 13 IAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGREA 72 +AGL+++A + P L + G L + G AR + LA P+LVVTATGREA Sbjct: 6 LAGLLKVAASDPKLKGLATQVGE--PHLHITGIDQARPWAIGTLANQAPVLVVTATGREA 63 Query: 73 SNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPLQV 132 +LTAEL + G VA FP+WETLPHERLSPG D VG R VL R+A L+V Sbjct: 64 EDLTAELTAMMGDKVAQFPAWETLPHERLSPGADIVGRRAQVLHRIAEGK-------LRV 116 Query: 133 VVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVRG 192 VVTA R QP+ + P++L+ EI E ++++L AY VDMV +RGE+AVRG Sbjct: 117 VVTAARGYSQPILKNVEGRSPISLAEDMEIELEAIVSQLEFRAYKHVDMVAKRGEYAVRG 176 Query: 193 GILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDVX 252 GILD+F T ++PVRVEFWGDEIT++R FSV DQR+IPEI V + REL ++DDV Sbjct: 177 GILDVFPTTLDYPVRVEFWGDEITDIRQFSVADQRAIPEIEVGAVDIFPARELPITDDVA 236 Query: 253 XXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYALLTDQF 312 + P + ++ ++L K+ E IP DGMEALL VL L + Sbjct: 237 KRAQELAL--------KHPG-NAALVELLTKVGEHIPADGMEALLAVLSDAPLITLPEFM 287 Query: 313 AADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFVELG 372 T VLL PEK+R + ADL TD FL A W AA+GAD + + + Sbjct: 288 PEGTHVLLVAPEKIRTRIADLESTDAEFLAAGWEAAAMGADGPLAAEGLDTEAASYRSYE 347 Query: 373 DVQAAAIRSGHPWWTLSQ----LSDES-ALELDIRAAPSTRGHQHAIDGIFAMLRAHVAT 427 ++A + P WT + ++DE+ L L+ P+ RG ID + A L AH Sbjct: 348 SLEATCANANLPLWTFAPPGMFMADEAQTLPLEYEPGPTPRGDVKEIDAMMAQLLAHTRD 407 Query: 428 GGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIP 487 GG AA + P G R+VER E I Sbjct: 408 GGRAAFIAPAQGAIKRMVERFVEKGIRTKVATPGWEPTPGEVTLYQALSHAGLVFPKARS 467 Query: 488 --GAN-----LVIITEADLTGSRATPVEG-KRLAAKRRSAADPLALTAGDLVVHDQHGIG 539 GA LV++TE DLTG+R + G KR AKRR+ DPLAL GD VVH+ HGIG Sbjct: 468 QGGATKEALPLVVVTETDLTGNRVGDIAGAKRRPAKRRNRVDPLALKQGDHVVHETHGIG 527 Query: 540 RFVEMVERTVGG----ARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALS 595 RF++M ERT+ +RREY+VLEYA++K+ + AD+L+VPMDSLD LS+Y GG+ P LS Sbjct: 528 RFLKMAERTIQSGDETSRREYIVLEYAASKRGQPADQLWVPMDSLDLLSKYTGGEKPTLS 587 Query: 596 RLGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETV 655 ++GGSDW NTK KAR AVREIAGELV LYAKRQASPGH F PDTPWQAEMED F + ET Sbjct: 588 KMGGSDWKNTKKKARAAVREIAGELVELYAKRQASPGHQFAPDTPWQAEMEDNFPYIETE 647 Query: 656 DQLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLAD 715 DQ+ AI VK DME +VPMDRV+ GDVGYGK E+AVRAAFKAVQDG QVAVLVPTTLLA Sbjct: 648 DQMLAIDAVKEDMESTVPMDRVVVGDVGYGKTEVAVRAAFKAVQDGMQVAVLVPTTLLAQ 707 Query: 716 QHLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDL 775 QH TF ERM GFPV ++ LSRFT +++ ++ GLA+GSVDIVIGTHRLLQTGV WK+L Sbjct: 708 QHADTFRERMTGFPVNIQVLSRFTSTKDAKEIVSGLADGSVDIVIGTHRLLQTGVHWKNL 767 Query: 776 GLVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER 835 GL+VVDEEQ FGVEHKEHIK+L+ VDVLTMSATPIPRTLEMS+AGIREMSTILTPPE+R Sbjct: 768 GLIVVDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDR 827 Query: 836 YPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHG 895 +PVLTYVG ++DKQ+AAA+RRELLRDGQ F++HN+VS I + A + LVPEAR+VVAHG Sbjct: 828 HPVLTYVGAYEDKQIAAAIRRELLRDGQTFFIHNKVSDIEKKARELRELVPEARIVVAHG 887 Query: 896 QMPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRV 955 QM E+ LE T++GFW+REYD+LVCTTIVETGLDI NANTL+VE A GLSQLHQLRGRV Sbjct: 888 QMNEEALEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRV 947 Query: 956 GRSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQ 1015 GRS ERGYAYFLYP A LTE +YDRL TIAQNN+LGAGMAVA+KDLE+RGAGNVLG +Q Sbjct: 948 GRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQ 1007 Query: 1016 SGHVAGVGFDLYVRLVGEAVEAYRAVADGKT-AITPEEPKDVRIDLPVDAHLPPDYIASD 1074 SGH+AGVGFDLYVRLVGEAVE ++A+A G+ T + PK++RIDLPVDAH+P DYI S+ Sbjct: 1008 SGHIAGVGFDLYVRLVGEAVETFKALARGEVPKATDDGPKEIRIDLPVDAHIPEDYINSE 1067 Query: 1075 RLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTA 1134 RLRLE YR+LAA+ + ++ V+E+ DRYG LP+P RL+AVA+LR R +G+ ++T Sbjct: 1068 RLRLEVYRKLAASKDNADLQLAVEEMEDRYGPLPQPVTRLLAVARLRHQARRAGVSDITV 1127 Query: 1135 PSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVE 1194 + +++ P+ L DS QVRLKR++PG+ YRA A +Q+ P+AG + + P +RDVE Sbjct: 1128 -QGTRIKVHPVELPDSKQVRLKRLFPGSNYRAAAKAIQLNFPKAGRN---VTDPKLRDVE 1183 Query: 1195 LVQAVADLITAL 1206 L+Q VAD ++ + Sbjct: 1184 LLQWVADFLSQM 1195 >tr|C0XQ03|C0XQ03_9CORY Tax_Id=525263 SubName: Full=Possible transcription-repair coupling factor;[Corynebacterium lipophiloflavum DSM 44291] Length = 1191 Score = 1224 bits (3168), Expect = 0.0 Identities = 660/1227 (53%), Positives = 833/1227 (67%), Gaps = 53/1227 (4%) Query: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 MT PA + GL+ +A+T P L+ G EL L G R + A+AL+R Sbjct: 1 MTTTVPA-----LGGLLTVAMTDPKLKGLLSNIGQD--ELHLTGIDQTRSWAAAALSRQV 53 Query: 61 PLLVVTATGREASNLTAELRGVFGAA-VAMFPSWETLPHERLSPGVDTVGARLMVLRRLA 119 P+L+VTATG EA +L AEL + G V FP+ ETLPHERLSP D VG R VL Sbjct: 54 PVLLVTATGHEAEDLAAELAALIGPEKVGYFPALETLPHERLSPAADVVGRRSKVLH--- 110 Query: 120 HPDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRV 179 DA QV+V A R++ QP+ L ++P+ ++ G E F ++ + AY V Sbjct: 111 ---DAP-----QVIVAAARAVCQPV---LPAIDPIVIARGSEYDFTQLTESIAHFAYEHV 159 Query: 180 DMVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVA 239 DMV +RGEFA RGG++D+F TAEHPVR+EFWGDE+T++R F+V DQR I E VDT+ Sbjct: 160 DMVAKRGEFATRGGLIDVFPTTAEHPVRIEFWGDEVTDIRTFAVADQRGIDE--VDTVEL 217 Query: 240 IACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPV 299 R+LL+ V + ++ +L ++++G DGMEAL+P Sbjct: 218 FPARQLLIDASVAARADELARAHPQ---------NATLVQMLTRISQGHHADGMEALIPA 268 Query: 300 LCPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVD 359 L + +L + + VL+ PEKVR + DL TD+ FLEA W AA+GA V+ Sbjct: 269 LTEKPFRVLPELLPKGSVVLVTAPEKVRARIEDLEATDKEFLEAGWEAAAMGAQGPVAVE 328 Query: 360 VEQLYGSGFVELGDVQAAAIRSGHPWWTLSQ-----LSDESALELDIRAAPSTRGHQHAI 414 + S + ++A+ + SG+ WWT + D + L L+ AP+ +G AI Sbjct: 329 GLDVSASSYRSFESLRASTLASGNSWWTFAPPGMFAADDATTLPLEFEPAPAPKGDPKAI 388 Query: 415 DGIFAMLRAHV-ATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXX 473 + +FA ++ HV + G AA V P GT R ERL E I Sbjct: 389 EQLFATVKLHVQSNNGTAAFVAPAKGTVERFAERLREHGISARIASDGLEPVTGQVTLYQ 448 Query: 474 XXXXXXXXXXXXIPGANLVIITEADLTGSRATPVEG-KRLAAKRRSAADPLALTAGDLVV 532 +PG N+V+ITE D+TG+R + G KR A +RR+ DPLAL GD VV Sbjct: 449 ALSHAGLV----LPGPNMVVITETDVTGNRVGDIAGAKRRAPRRRNRVDPLALNPGDFVV 504 Query: 533 HDQHGIGRFVEMVERTVG----GARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVG 588 H+ HGIGRFV+M ERTV +RREY+VLEY K+ + D+L+VPM+SLD LS+Y G Sbjct: 505 HETHGIGRFVKMAERTVHTGEEDSRREYIVLEYQPAKRGQPNDQLWVPMESLDLLSKYSG 564 Query: 589 GQAPALSRLGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDA 648 G+ P+LS++GGSDW +TK KAR AVREIA ELV LYAKRQA+PGHAF PDTPWQ EMED Sbjct: 565 GEQPSLSKMGGSDWRSTKRKARAAVREIAAELVQLYAKRQAAPGHAFAPDTPWQVEMEDN 624 Query: 649 FGFTETVDQLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLV 708 F F ET DQL AI VK DMEK PMDRVI GDVG+GK E+AVRAAFKAVQDGKQVAVLV Sbjct: 625 FPFVETEDQLLAIDAVKEDMEKPTPMDRVIVGDVGFGKTEVAVRAAFKAVQDGKQVAVLV 684 Query: 709 PTTLLADQHLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQT 768 PTTLLA QH TF+ RM GF VT++ LSRFT A ES+ + GLA+GSVD+VIGTHRLL T Sbjct: 685 PTTLLAQQHFSTFSTRMDGFGVTIRELSRFTSAKESKETLAGLADGSVDVVIGTHRLLAT 744 Query: 769 GVCWKDLGLVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTI 828 GV WK+LGL+VVDEEQ FGVEHKEHIK+L++HVDVLTM+ATPIPRTLEMSL GIREM++I Sbjct: 745 GVQWKNLGLIVVDEEQRFGVEHKEHIKALKSHVDVLTMTATPIPRTLEMSLTGIREMTSI 804 Query: 829 LTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEA 888 TPPE+R+PVLTYVGP +DKQ+AAA+RRELLRDGQ FY+HN+V+ I +AA RV LVPEA Sbjct: 805 TTPPEDRHPVLTYVGPQEDKQIAAAIRRELLRDGQIFYIHNKVADIEKAARRVRDLVPEA 864 Query: 889 RVVVAHGQMPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQL 948 RVVVAHGQM E LLE T++GFWNREYD+LVCTTIVETGLDI NANTL+VE A GLSQL Sbjct: 865 RVVVAHGQMSEQLLEQTVQGFWNREYDVLVCTTIVETGLDIANANTLIVENAQNMGLSQL 924 Query: 949 HQLRGRVGRSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAG 1008 HQLRGRVGRS +R YAYFLYP LTE +YDRL TIAQNN+LG+G+AVA KDLE+RGAG Sbjct: 925 HQLRGRVGRSRDRAYAYFLYPKDKTLTETSYDRLATIAQNNDLGSGIAVAQKDLEMRGAG 984 Query: 1009 NVLGVEQSGHVAGVGFDLYVRLVGEAVEAYRAVADGKTA-ITPEEPKDVRIDLPVDAHLP 1067 NVLG EQSGH+AGVGFD+YVRLVGEAV+ Y+A+ G+T T + PK++RIDLPVDAH+P Sbjct: 985 NVLGAEQSGHIAGVGFDMYVRLVGEAVDTYKALMTGETVDATGQGPKEIRIDLPVDAHIP 1044 Query: 1068 PDYIASDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGS 1127 Y+ S+RLRLE YR+LA + D ++A V +E++DR+G LP + L+AVA+LR R + Sbjct: 1045 DTYVNSERLRLEIYRKLAESRDDADLATVSEEMVDRFGPLPREVEHLIAVARLRQQARAA 1104 Query: 1128 GIIEVTAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGV 1187 G+ ++ S +R P+ L DS QVRLKR+YPGA YRA A +QVP+PRA + + Sbjct: 1105 GVSDILV-QGSRIRFQPVELPDSKQVRLKRLYPGANYRAAAKALQVPLPRAAAG---VNQ 1160 Query: 1188 PCIRDVELVQAVADLITALQGLPRKVI 1214 P +RD ELVQ V+D + + G+ +KV+ Sbjct: 1161 PTLRDTELVQWVSDFLADMFGVDKKVV 1187 >tr|C8X6Q6|C8X6Q6_NAKMY Tax_Id=479431 SubName: Full=Transcription-repair coupling factor;[Nakamurella multipartita] Length = 1192 Score = 1219 bits (3155), Expect = 0.0 Identities = 665/1210 (54%), Positives = 831/1210 (68%), Gaps = 41/1210 (3%) Query: 13 IAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALAR----LG-PLLVVTA 67 + GL+ P F + E G+ + GP R FV LA G P+L+VTA Sbjct: 6 LRGLLAAVSADPFFAAMNEATGSITHRV--TGPPAIRPFVVGTLAAGYPDAGVPVLLVTA 63 Query: 68 TGREASNLTAELRGVFGA-AVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARL 126 TGREA A + + G VA+FPSWETLPHERLSP DTVG RL LRRLAHP++ Sbjct: 64 TGREAEAAVASIGDLIGDDRVALFPSWETLPHERLSPRADTVGRRLATLRRLAHPEEHPG 123 Query: 127 GPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRG 186 G P VVV +RS++QPM LG + PVTL VG E+ ++ RLV LAY RVDMV +RG Sbjct: 124 GYPA-VVVATIRSMIQPMAPHLGEMAPVTLRVGQEVDLTELVDRLVSLAYGRVDMVEKRG 182 Query: 187 EFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELL 246 E AVRGGILDIF PTA+HP+RVEFWGDEI+++R F V DQRS+ V+ +VA CRE+L Sbjct: 183 EIAVRGGILDIFPPTADHPIRVEFWGDEISDLRTFGVTDQRSLG--AVEQVVAPPCREIL 240 Query: 247 LSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCPDDYA 306 L+ +V T +P ++ +L LA GI V+GME+L+PVL DD Sbjct: 241 LTAEVRERAAQLSAQQ-----TGDPTLA----QMLDNLANGITVEGMESLIPVLVGDDLE 291 Query: 307 LLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGS 366 LL + T V+L DPE++R +AADL++T FL ASW AA G AP+D L S Sbjct: 292 LLPNLVRPGTHVVLADPERIRTRAADLVRTGEEFLAASWMAAATGG--RAPID---LGSS 346 Query: 367 GFVELGDVQAAAIRSGHPWWTLSQLSDESALELD----IRAAPSTRGHQHAIDGIFAMLR 422 + L +V + P W ++ AL+ + AP+ RG + R Sbjct: 347 AYRSLAEVLDVVRDAELPIWRVASFESGEALQESDSPAVLGAPAYRGE---LASAIHDAR 403 Query: 423 AHVATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 482 A GG +V G GTA R ERLAE+D+ Sbjct: 404 ERQAAGGSTVVVVAGAGTAARAGERLAEADMGVVVAEQLTEPPRSDVVTVTCGRLEHGFV 463 Query: 483 XXXIPGANLVIITEADLTGSRATPVEGK--RLAAKRRSAADPLALTAGDLVVHDQHGIGR 540 + + L ++TEADLTGS E RL A+RR+A DPLAL GD VVH QHGIG+ Sbjct: 464 ---LRESGLAVLTEADLTGSTGVNPEAAAARLPARRRNAVDPLALKPGDYVVHSQHGIGK 520 Query: 541 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS 600 +V+MV+RT GGA REYLV+EYA +K+++ D+L+VP D+LDQLSRYVGG+ P L++LGG+ Sbjct: 521 YVDMVQRTSGGATREYLVVEYAPSKRNQPGDRLFVPTDALDQLSRYVGGEVPTLNKLGGA 580 Query: 601 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA 660 DWA TK +AR AVR+IA +LV +YA R ++PGHAF PDTPWQ E+EDAF +TET DQL A Sbjct: 581 DWAKTKGRARKAVRQIAAKLVQVYAARASAPGHAFAPDTPWQRELEDAFPYTETHDQLAA 640 Query: 661 ITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT 720 I EVK DME++VPMDRVI GDVGYGK EIAVRAAFKAVQDGKQV +LVPTTLLA QHL T Sbjct: 641 IDEVKADMERAVPMDRVISGDVGYGKTEIAVRAAFKAVQDGKQVVILVPTTLLAQQHLST 700 Query: 721 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV 780 F+ERM+ FPVTV+GLSRFT ++ + GLA+GSVDIVIGTHRLLQ + +KDLGLVVV Sbjct: 701 FSERMSAFPVTVRGLSRFTSNEQAAQTVKGLADGSVDIVIGTHRLLQPSIRYKDLGLVVV 760 Query: 781 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 840 DEEQ FGVEHKEHI +LR HVD+LTMSATPIPRTLEMSLAGIREMSTI TPPEER+P+LT Sbjct: 761 DEEQRFGVEHKEHITALRAHVDMLTMSATPIPRTLEMSLAGIREMSTIATPPEERHPILT 820 Query: 841 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED 900 YVG +D+K VAAA+RRELLR+GQ FYVHNRV+ I A R+ VPEAR+ VAHGQM ED Sbjct: 821 YVGAYDEKLVAAAIRRELLREGQVFYVHNRVADIESVARRLREAVPEARIAVAHGQMNED 880 Query: 901 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE 960 LE + GFW RE+D+L+CTTIVETGLDI NANTL+V+ A+ GLSQ+HQLRGRVGR E Sbjct: 881 RLEKIIDGFWAREWDVLLCTTIVETGLDISNANTLIVDHAEVLGLSQMHQLRGRVGRGRE 940 Query: 961 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1020 RGYAYFLYP + PLTE A+DRL TIAQN++LGAGMAVA+KDLEIRGAG++LG EQSGH+A Sbjct: 941 RGYAYFLYPGEKPLTETAHDRLATIAQNSDLGAGMAVAMKDLEIRGAGSILGAEQSGHIA 1000 Query: 1021 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 GVGFDLYVRLVGEAV A++ A EEP +VR+DLP+DA++P +YI ++RLRL+ Sbjct: 1001 GVGFDLYVRLVGEAVTAFKKAAAAAGEELQEEPVEVRVDLPIDANVPHEYIPAERLRLDA 1060 Query: 1081 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM 1140 YRR+A +S EVAAV DEL DRYG +PE + L+AVA+ R +CR G+ EVT + Sbjct: 1061 YRRIAGVASKEEVAAVRDELTDRYGPIPEQVENLLAVAEFRQVCRSVGVTEVTL-GPPGL 1119 Query: 1141 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA 1200 R++PI L +S Q+R+ R+YPG++YRA A+ + + P A GG +G +RD EL+ + Sbjct: 1120 RIAPIVLPESGQLRMARLYPGSKYRAAASVLTLKPPTA---GGRIGAAALRDRELLTYLG 1176 Query: 1201 DLITALQGLP 1210 ++ + +P Sbjct: 1177 RVLEDIAPVP 1186 >tr|C8NVV2|C8NVV2_9CORY Tax_Id=585529 (mfd)SubName: Full=Transcription-repair coupling factor; EC=3.6.1.-;[Corynebacterium genitalium ATCC 33030] Length = 1224 Score = 1215 bits (3143), Expect = 0.0 Identities = 650/1208 (53%), Positives = 826/1208 (68%), Gaps = 46/1208 (3%) Query: 13 IAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLGPLLVVTATGREA 72 +AG++ A P L R G PA L + G R + A+AL+R P+L++TATG EA Sbjct: 11 LAGVLTQAAGDPKLTGLRARVGD-PA-LHVTGIDQVRPWAAAALSREVPVLLITATGHEA 68 Query: 73 SNLTAELRGVFGAA-VAMFPSWETLPHERLSPGVDTVGARLMVLRRLAHPDDARLGPPLQ 131 +L AE+ + G VA+ P+ ETLPHERLSP D +GAR V+ +A + Sbjct: 69 EDLAAEIAALIGQEQVALMPALETLPHERLSPAADVIGARNKVVHNIAST---------R 119 Query: 132 VVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVR 191 VVV + R+ QP+ L V PVT+ +G+E F + LV AY VDMV +RGEFA R Sbjct: 120 VVVASARAACQPV---LPPVAPVTVKLGEEYDFGELTETLVRFAYEHVDMVAKRGEFATR 176 Query: 192 GGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDV 251 GGI+D+F TAEHPVR+EFWGDE T++R F+V DQR+I ++ ++ R+LL+ D V Sbjct: 177 GGIIDVFPTTAEHPVRIEFWGDEATDLRTFAVADQRTIDDVA--SVEMHPARQLLIDDSV 234 Query: 252 XXXXXXXXXXXXXXXPTEEPAISGSVT--DVLAKLAEGIPVDGMEALLPVLCPDDYALLT 309 A SG+ T +L +++EG VDGMEA++P L +++L Sbjct: 235 RTRAQAL-----------STAHSGNPTLAQLLERVSEGTYVDGMEAIVPALTDASFSVLP 283 Query: 310 DQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQLYGSGFV 369 + A + VL+ PEKVR + ADL TD+ FLEA W AA+GA+ + + S + Sbjct: 284 ELMPAGSIVLVTSPEKVRARIADLQATDQEFLEAGWEAAAMGAEGPVAAEGLDVSASSYR 343 Query: 370 ELGDVQAAAIRSGHPWWTLSQ-----LSDESALELDIRAAPSTRGHQHAIDGIFAMLRAH 424 ++ +A + + WWT + +DE+ L L+ AP+ +G I+ ++ ++ H Sbjct: 344 SFESLEVSARDADNAWWTFAPPGMFTANDEATLPLEYEPAPAPKGDPKQIEALYGQVKLH 403 Query: 425 VATGGYAAIVTPGTGTAHRVVERLAESDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 484 + GG AA V P GT R+ ERL E+ + Sbjct: 404 LQGGGRAAFVAPAKGTIERMAERLRENSVSARIATPGLEPVDGQVTLYQALSHAGLS--- 460 Query: 485 XIPGANLVIITEADLTGSRATPVEG-KRLAAKRRSAADPLALTAGDLVVHDQHGIGRFVE 543 PG LV+ TE D+TG+R + G KR A +RR+ DPLAL GD VVHD HGIGRFV+ Sbjct: 461 -FPGPGLVVFTETDVTGNRVGDIAGAKRRAPRRRNRVDPLALKPGDYVVHDTHGIGRFVK 519 Query: 544 MVERTVG----GARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGG 599 M ERT+G ARRE++VLEY K+ + AD L+VPMDSLD LS+Y GG+ P+LS++GG Sbjct: 520 MAERTIGTGSDAARREFIVLEYQPAKRGQPADMLWVPMDSLDLLSKYSGGEQPSLSKMGG 579 Query: 600 SDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLT 659 SDW NTK KAR AVREIAGELV LYAKR ++PGHAF D+PWQ EMED F F ET DQ+ Sbjct: 580 SDWKNTKRKARAAVREIAGELVELYAKRASAPGHAFAADSPWQMEMEDNFPFVETEDQMA 639 Query: 660 AITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLR 719 AI VK DMEK PMDRVI GDVG+GK E+AVRAAFKAVQDGKQVAVLVPTTLLA QH Sbjct: 640 AIEAVKSDMEKPTPMDRVIVGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHYS 699 Query: 720 TFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVV 779 TF++RM GF V ++ LSRFT AA+++ + GLA+GSVDIVIGTHRLLQTGV WK+LGL+V Sbjct: 700 TFSQRMDGFGVEIRELSRFTTAADAKKISAGLADGSVDIVIGTHRLLQTGVQWKNLGLIV 759 Query: 780 VDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVL 839 VDEEQ FGVEHKEHIK+L++HVDVLTM+ATPIPRTLEMSL GIREM++I TPPE+R+PVL Sbjct: 760 VDEEQRFGVEHKEHIKALKSHVDVLTMTATPIPRTLEMSLTGIREMTSITTPPEDRHPVL 819 Query: 840 TYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPE 899 TYVGP +DKQVAAA+RRELLRDGQ FY+HN+V+ I + A + LVPEAR+VVAHGQM E Sbjct: 820 TYVGPQEDKQVAAAIRRELLRDGQVFYIHNKVADIEKTARHLRTLVPEARIVVAHGQMSE 879 Query: 900 DLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSH 959 +LE T++GFW RE+D+LVCTTIVETGLDI NANTL+VE A GLSQLHQLRGRVGRS Sbjct: 880 QVLEQTVQGFWGREFDVLVCTTIVETGLDIANANTLIVENAQNMGLSQLHQLRGRVGRSR 939 Query: 960 ERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHV 1019 ERGYAYFLYP LTE +YDRL TIAQNN+LGAGMAVA KDLE+RGAGNVLG EQSGH+ Sbjct: 940 ERGYAYFLYPKDKVLTETSYDRLATIAQNNDLGAGMAVAQKDLEMRGAGNVLGAEQSGHI 999 Query: 1020 AGVGFDLYVRLVGEAVEAYRAVADGKTA-ITPEEPKDVRIDLPVDAHLPPDYIASDRLRL 1078 AGVGFD+YVRLVGEAVE ++++ G+ T PK++RIDLPVDAH+P YI S+RLRL Sbjct: 1000 AGVGFDMYVRLVGEAVETFKSLMQGEVVDATDHGPKEIRIDLPVDAHIPETYINSERLRL 1059 Query: 1079 EGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSAS 1138 E YR+LAAA + E+ V DEL+DR+G LP QRL AVA++R R +G+ ++T + Sbjct: 1060 ESYRKLAAARDEDELTTVADELVDRFGDLPAEVQRLFAVARVRHQARKAGVADITM-QGT 1118 Query: 1139 TMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQA 1198 ++ P+ + DS Q+RLKR+YPGA YRA A +QVP PR G + L P +RD EL+Q Sbjct: 1119 RLKFHPVDMADSKQIRLKRLYPGANYRAAAKAIQVPFPREGGTKKALNAPNLRDEELLQW 1178 Query: 1199 VADLITAL 1206 VAD ++ + Sbjct: 1179 VADFLSEM 1186 >tr|C2GIP0|C2GIP0_9CORY Tax_Id=548478 (mfd)SubName: Full=Transcription-repair coupling factor;[Corynebacterium glucuronolyticum ATCC 51866] Length = 1218 Score = 1203 bits (3112), Expect = 0.0 Identities = 653/1192 (54%), Positives = 816/1192 (68%), Gaps = 38/1192 (3%) Query: 40 LILAGPACARLFVASALARLGPLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHE 99 L + P R ++ AL+ PLLVVTA+GREA +LTAEL + G V +PSWETLPHE Sbjct: 29 LHITAPDEVRAWLVGALSAHVPLLVVTASGREAEDLTAELTAMMGDKVMYYPSWETLPHE 88 Query: 100 RLSPGVDTVGARLMVLRRLAHPDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVG 159 RLSPGVD +G + VL L L VVVTA R L QP+ ++ +PVT++VG Sbjct: 89 RLSPGVDIIGQQAKVLHHL---------DSLDVVVTAARGLAQPLVNEVTGRDPVTVTVG 139 Query: 160 DEIGFERVIARLVELAYTRVDMVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMR 219 ++ FE +I LV +Y+RVD+V RGEFAVRGGI+DIF TA +PVRVEFWGDE+TE+ Sbjct: 140 EDYPFEELIDSLVFRSYSRVDLVAARGEFAVRGGIIDIFPTTANNPVRVEFWGDEVTEIT 199 Query: 220 MFSVVDQRSIPEIGVDTLVAIACRELLLSDDVXXXXXXXXXXXXXXXPTEEPAISGSVTD 279 F+V DQR+ + + + R L ++D++ + ++ Sbjct: 200 TFAVADQRTYSDGQLKKVELYPARALPITDEIKKRAEALARTYGG---------NQALAQ 250 Query: 280 VLAKLAEGIPVDGMEALLPVLCPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRA 339 +L K+AEGI DGME L+PVL + D+ VLL DPE++R + DL TD Sbjct: 251 ILGKVAEGISADGMETLIPVLTDSPLVTIVDKLPEGAHVLLVDPERIRTRVGDLKATDTE 310 Query: 340 FLEASWSVAAIGADNAAPVDVEQL--YGSGFVELGDVQAAAIRSGHPWWTLSQ-----LS 392 FLEA W +AA+G D PVD + L S + L ++ A P WTL+ Sbjct: 311 FLEAGWELAAMGGDG--PVDHKDLDLEPSSYRSLESLEVTAREHEIPLWTLTPPGMMASD 368 Query: 393 DESALELDIRAAPSTRGHQHAIDGIFAMLRAHVATGGYAAIVTPGTGTAHRVVERLAESD 452 D L L RG + I + L AH GG A ++P R ++L E Sbjct: 369 DAETLPLSFGDLVRPRGDEKKISQLMEQLLAHTLAGGAAVYISPQKANCARFGDKLHERG 428 Query: 453 IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPGANLVIITEADLTGSRATPVEG-KR 511 I LV++TE D+TG+R + G KR Sbjct: 429 IAHVQGTEGMKPKAGAVTIYQAFSHNGVVFVPQDSETPLVVVTETDVTGNRVGDIAGAKR 488 Query: 512 LAAKRRSAADPLALTAGDLVVHDQHGIGRFVEMVERTV----GGARREYLVLEYASNKKS 567 AK+R+ DPLALTAGD VVH+ HGIGRFV+M ER V +RREY+VLEYA +++ Sbjct: 489 RKAKKRNRVDPLALTAGDYVVHETHGIGRFVKMTEREVRTGDDTSRREYIVLEYAPSRRG 548 Query: 568 KQADKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTKARCAVREIAGELVSLYAKR 627 D+LYVPMDSLD LS+YVGG+ P +S++GG+DW TK KAR AV+EIA ELV LYAKR Sbjct: 549 GPPDQLYVPMDSLDLLSKYVGGEKPTVSKMGGADWKKTKKKARSAVKEIAAELVDLYAKR 608 Query: 628 QASPGHAFGPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEKSVPMDRVICGDVGYGKA 687 +A+PGHAF PD+PWQAEMED F + ET DQ+ AI VK DME+ VPMDRVI GDVGYGK Sbjct: 609 RAAPGHAFAPDSPWQAEMEDNFPYVETEDQMLAIDAVKHDMEQPVPMDRVIIGDVGYGKT 668 Query: 688 EIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRTFTERMAGFPVTVKGLSRFTDAAESRAV 747 E+AVRAAFKAVQDGKQVAVLVPTTLLA QH TF ERM GF +T++ LSRFT ++R + Sbjct: 669 EVAVRAAFKAVQDGKQVAVLVPTTLLAQQHEATFRERMDGFGITIRQLSRFTPDKQAREI 728 Query: 748 IDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVVDEEQWFGVEHKEHIKSLRTHVDVLTMS 807 I GL +GSVDIVIGTHRLLQTGV WKDLGLV+VDEEQ FGVEHKEHIK+LR HVDVLTMS Sbjct: 729 IKGLVDGSVDIVIGTHRLLQTGVQWKDLGLVIVDEEQRFGVEHKEHIKALRAHVDVLTMS 788 Query: 808 ATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYV 867 ATPIPRTLEMS++GIREM+TILTPP++R PVLTYVG +DKQVAAA+RRELLRDGQ FYV Sbjct: 789 ATPIPRTLEMSMSGIREMTTILTPPQDRRPVLTYVGAQEDKQVAAAIRRELLRDGQVFYV 848 Query: 868 HNRVSSIYQAAARVCGLVPEARVVVAHGQMPEDLLETTMRGFWNREYDILVCTTIVETGL 927 HNRV SI + A ++ LVPEAR+VVAHGQM E+ LE T++GFW+RE+D+LVCTTIVETGL Sbjct: 849 HNRVKSIEERARQLRELVPEARIVVAHGQMSEEQLEKTVQGFWDREFDVLVCTTIVETGL 908 Query: 928 DIPNANTLVVERADTFGLSQLHQLRGRVGRSHERGYAYFLYPPQAPLTEIAYDRLVTIAQ 987 DI NANTL+VE A GLSQLHQLRGRVGRS ER YAYFLYP LTE +Y+RL TIAQ Sbjct: 909 DIANANTLIVENAHHMGLSQLHQLRGRVGRSRERAYAYFLYPKGQVLTETSYERLTTIAQ 968 Query: 988 NNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVGEAVEAYRAVADGKTA 1047 NN++GAGMAVA+KDLE+RGAGNVLG EQSGH+AGVGFDLYVRLV EAVEA+RA+ADGK Sbjct: 969 NNDMGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVEEAVEAFRALADGKPL 1028 Query: 1048 -ITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGA 1106 T ++ ++R+DLPVD+H+P DYIAS+RLRLE YR+LAA+ ++ ++ V++E+ DRYG Sbjct: 1029 DATDQQSAEIRVDLPVDSHIPDDYIASERLRLEIYRKLAASRTEEDLRGVMEEMSDRYGP 1088 Query: 1107 LPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRA 1166 LPEP RL++V +LR L R +GI+++ A + ++L P+ L DS QVRLKR+YPG+ YR Sbjct: 1089 LPEPVLRLLSVTRLRHLARRAGIVDI-ALQGTRVKLHPLELPDSKQVRLKRLYPGSSYRP 1147 Query: 1167 TAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVADLITALQGLPRKVIGITG 1218 A VQV +P++G+ G + +RD ELVQ VAD+I AL + I +TG Sbjct: 1148 AAKAVQVKVPKSGA--GRVNDKELRDTELVQWVADVIAAL--CDEEEIDVTG 1195 Database: Amellifera_nr Posted date: Jan 15, 2010 5:10 AM Number of letters in database: 3,808,957,724 Number of sequences in database: 11,153,314 Lambda K H 0.319 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11153314 Number of Hits to DB: 8,579,369,294 Number of extensions: 355208805 Number of successful extensions: 929895 Number of sequences better than 10.0: 8349 Number of HSP's gapped: 920902 Number of HSP's successfully gapped: 10180 Length of query: 1224 Length of database: 3,808,957,724 Length adjustment: 149 Effective length of query: 1075 Effective length of database: 2,147,113,938 Effective search space: 2308147483350 Effective search space used: 2308147483350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits)