BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ML0523
         (190 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,153,314 sequences; 3,808,957,724 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

sp|Q9CCR9|NUSB_MYCLE Tax_Id=1769 (nusB)RecName: Full=N utilizati...   304   3e-81
sp|B8ZUK7|NUSB_MYCLB Tax_Id=561304 (nusB)RecName: Full=N utiliza...   304   3e-81
sp|Q741J2|NUSB_MYCPA Tax_Id=1770 (nusB)RecName: Full=N utilizati...   197   6e-49
sp|A0QI54|NUSB_MYCA1 Tax_Id=243243 (nusB)RecName: Full=N utiliza...   197   6e-49
tr|B2HND3|B2HND3_MYCMM Tax_Id=216594 (nusB)SubName: Full=N utili...   194   3e-48
tr|A0PPH7|A0PPH7_MYCUA Tax_Id=362242 (nusB)SubName: Full=N utili...   193   7e-48
sp|C1AF01|NUSB_MYCBT Tax_Id=561275 (nusB)RecName: Full=N utiliza...   191   3e-47
sp|A1KLN0|NUSB_MYCBP Tax_Id=410289 (nusB)RecName: Full=N utiliza...   191   3e-47
sp|Q7TYC8|NUSB_MYCBO Tax_Id=1765 (nusB)RecName: Full=N utilizati...   191   3e-47
sp|P95020|NUSB_MYCTU Tax_Id=1773 (nusB)RecName: Full=N utilizati...   188   2e-46
sp|A5U5N2|NUSB_MYCTA Tax_Id=419947 (nusB)RecName: Full=N utiliza...   188   2e-46
tr|C6DMG3|C6DMG3_MYCTK Tax_Id=478434 SubName: Full=N utilization...   188   2e-46
tr|A5WQE1|A5WQE1_MYCTF Tax_Id=336982 SubName: Full=N utilization...   188   2e-46
tr|A4KNW0|A4KNW0_MYCTU Tax_Id=395095 SubName: Full=N utilization...   188   2e-46
tr|A2VKP3|A2VKP3_MYCTU Tax_Id=348776 SubName: Full=N utilization...   188   2e-46
sp|A0QWR5|NUSB_MYCS2 Tax_Id=246196 (nusB)RecName: Full=N utiliza...   180   6e-44
sp|A4TBX3|NUSB_MYCGI Tax_Id=350054 (nusB)RecName: Full=N utiliza...   179   1e-43
sp|A1T8G0|NUSB_MYCVP Tax_Id=350058 (nusB)RecName: Full=N utiliza...   179   2e-43
sp|Q1B9G7|NUSB_MYCSS Tax_Id=164756 (nusB)RecName: Full=N utiliza...   174   3e-42
sp|A1UFJ6|NUSB_MYCSK Tax_Id=189918 (nusB)RecName: Full=N utiliza...   174   3e-42
sp|A3PZ57|NUSB_MYCSJ Tax_Id=164757 (nusB)RecName: Full=N utiliza...   174   3e-42
tr|B1MCE4|B1MCE4_MYCA9 Tax_Id=561007 SubName: Full=Probable tran...   167   4e-40
sp|C1B4I5|NUSB_RHOOB Tax_Id=632772 (nusB)RecName: Full=N utiliza...   156   1e-36
sp|Q0S0M6|NUSB_RHOSR Tax_Id=101510 (nusB)RecName: Full=N utiliza...   155   2e-36
sp|C0ZZC1|NUSB_RHOE4 Tax_Id=234621 (nusB)RecName: Full=N utiliza...   152   1e-35
tr|C3JST1|C3JST1_RHOER Tax_Id=596309 (nusB)SubName: Full=Transcr...   152   1e-35
sp|Q5YTL2|NUSB_NOCFA Tax_Id=37329 (nusB)RecName: Full=N utilizat...   146   1e-33
tr|D0LCQ6|D0LCQ6_9ACTO Tax_Id=526226 SubName: Full=Transcription...   132   2e-29
tr|C2ATL1|C2ATL1_TSUPA Tax_Id=521096 SubName: Full=NusB antiterm...   125   2e-27
tr|C6W8Z7|C6W8Z7_ACTMD Tax_Id=446462 SubName: Full=NusB antiterm...   120   7e-26
sp|C5C681|NUSB_BEUC1 Tax_Id=471853 (nusB)RecName: Full=N utiliza...   119   1e-25
tr|C0UA51|C0UA51_9ACTO Tax_Id=526225 SubName: Full=NusB antiterm...   118   4e-25
sp|A0JX79|NUSB_ARTS2 Tax_Id=290399 (nusB)RecName: Full=N utiliza...   117   8e-25
tr|C7R4C7|C7R4C7_JONDD Tax_Id=471856 SubName: Full=NusB antiterm...   117   8e-25
tr|C1RPY9|C1RPY9_9CELL Tax_Id=446466 SubName: Full=NusB antiterm...   116   1e-24
sp|A6WCD3|NUSB_KINRD Tax_Id=266940 (nusB)RecName: Full=N utiliza...   115   2e-24
tr|C8XJK9|C8XJK9_NAKMY Tax_Id=479431 SubName: Full=NusB antiterm...   115   2e-24
tr|C4EKZ6|C4EKZ6_STRRS Tax_Id=479432 SubName: Full=Transcription...   114   4e-24
tr|C9KAL7|C9KAL7_9MICO Tax_Id=446469 SubName: Full=NusB antiterm...   114   7e-24
sp|Q47QY5|NUSB_THEFY Tax_Id=269800 (nusB)RecName: Full=N utiliza...   112   2e-23
sp|A1R700|NUSB_ARTAT Tax_Id=290340 (nusB)RecName: Full=N utiliza...   111   3e-23
tr|B2GI93|B2GI93_KOCRD Tax_Id=378753 (nusB)SubName: Full=Transcr...   111   3e-23
tr|C4RHP4|C4RHP4_9ACTO Tax_Id=219305 SubName: Full=Transcription...   111   4e-23
tr|C4LIU4|C4LIU4_CORK4 Tax_Id=645127 SubName: Full=N utilization...   110   6e-23
tr|C0V667|C0V667_9MICO Tax_Id=446471 SubName: Full=NusB antiterm...   110   6e-23
sp|B8H8V2|NUSB_ARTCA Tax_Id=452863 (nusB)RecName: Full=N utiliza...   110   8e-23
tr|C7MSI9|C7MSI9_SACVD Tax_Id=471857 SubName: Full=Transcription...   110   8e-23
sp|A1SJD8|NUSB_NOCSJ Tax_Id=196162 (nusB)RecName: Full=N utiliza...   109   1e-22
tr|A9WSB5|A9WSB5_RENSM Tax_Id=288705 (nusB)SubName: Full=Transcr...   109   1e-22
tr|C1WUI7|C1WUI7_9ACTO Tax_Id=479435 SubName: Full=Transcription...   109   1e-22

>sp|Q9CCR9|NUSB_MYCLE Tax_Id=1769 (nusB)RecName: Full=N utilization
           substance protein B homolog; Short=Protein
           nusB;[Mycobacterium leprae]
          Length = 190

 Score =  304 bits (779), Expect = 3e-81
 Identities = 160/190 (84%), Positives = 160/190 (84%)

Query: 1   MSNPVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGV 60
           MSNPVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGV
Sbjct: 1   MSNPVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGV 60

Query: 61  SEHTARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKEL 120
           SEHTARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLY               LAKEL
Sbjct: 61  SEHTARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEAVELAKEL 120

Query: 121 STDDSPGFVNGLLGKVMLVTPQIXXXXXXXXXXXXXXXGTSEDHVPQREPAAGQLGQDDS 180
           STDDSPGFVNGLLGKVMLVTPQI               GTSEDHVPQREPAAGQLGQDDS
Sbjct: 121 STDDSPGFVNGLLGKVMLVTPQIRAAAQAVQQAVRMAAGTSEDHVPQREPAAGQLGQDDS 180

Query: 181 NGGQVAAVCR 190
           NGGQVAAVCR
Sbjct: 181 NGGQVAAVCR 190


>sp|B8ZUK7|NUSB_MYCLB Tax_Id=561304 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Mycobacterium leprae]
          Length = 190

 Score =  304 bits (779), Expect = 3e-81
 Identities = 160/190 (84%), Positives = 160/190 (84%)

Query: 1   MSNPVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGV 60
           MSNPVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGV
Sbjct: 1   MSNPVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGV 60

Query: 61  SEHTARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKEL 120
           SEHTARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLY               LAKEL
Sbjct: 61  SEHTARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEAVELAKEL 120

Query: 121 STDDSPGFVNGLLGKVMLVTPQIXXXXXXXXXXXXXXXGTSEDHVPQREPAAGQLGQDDS 180
           STDDSPGFVNGLLGKVMLVTPQI               GTSEDHVPQREPAAGQLGQDDS
Sbjct: 121 STDDSPGFVNGLLGKVMLVTPQIRAAAQAVQQAVRMAAGTSEDHVPQREPAAGQLGQDDS 180

Query: 181 NGGQVAAVCR 190
           NGGQVAAVCR
Sbjct: 181 NGGQVAAVCR 190


>sp|Q741J2|NUSB_MYCPA Tax_Id=1770 (nusB)RecName: Full=N utilization
           substance protein B homolog; Short=Protein
           nusB;[Mycobacterium paratuberculosis]
          Length = 156

 Score =  197 bits (500), Expect = 6e-49
 Identities = 98/143 (68%), Positives = 113/143 (79%)

Query: 1   MSNPVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGV 60
           MS P++GRHQARKRAVDLLFEAEAR LSP E+++VR+ LA +  +VAPL PYT  VA+GV
Sbjct: 1   MSKPLRGRHQARKRAVDLLFEAEARGLSPAEVVDVRTGLADTNPEVAPLQPYTAAVARGV 60

Query: 61  SEHTARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKEL 120
            +H A ID+LI SHLQGW LDRLPAVDRAILRV++WELLY               LAKEL
Sbjct: 61  GDHAAHIDDLISSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKEL 120

Query: 121 STDDSPGFVNGLLGKVMLVTPQI 143
           STDDSPGFVNG+LG+VMLVTPQI
Sbjct: 121 STDDSPGFVNGVLGQVMLVTPQI 143


>sp|A0QI54|NUSB_MYCA1 Tax_Id=243243 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Mycobacterium avium]
          Length = 156

 Score =  197 bits (500), Expect = 6e-49
 Identities = 98/143 (68%), Positives = 113/143 (79%)

Query: 1   MSNPVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGV 60
           MS P++GRHQARKRAVDLLFEAEAR LSP E+++VR+ LA +  +VAPL PYT  VA+GV
Sbjct: 1   MSKPLRGRHQARKRAVDLLFEAEARGLSPAEVVDVRTGLADTNPEVAPLQPYTAAVARGV 60

Query: 61  SEHTARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKEL 120
            +H A ID+LI SHLQGW LDRLPAVDRAILRV++WELLY               LAKEL
Sbjct: 61  GDHAAHIDDLISSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKEL 120

Query: 121 STDDSPGFVNGLLGKVMLVTPQI 143
           STDDSPGFVNG+LG+VMLVTPQI
Sbjct: 121 STDDSPGFVNGVLGQVMLVTPQI 143


>tr|B2HND3|B2HND3_MYCMM Tax_Id=216594 (nusB)SubName: Full=N
           utilization substance protein NusB;[Mycobacterium
           marinum]
          Length = 173

 Score =  194 bits (494), Expect = 3e-48
 Identities = 97/140 (69%), Positives = 111/140 (79%)

Query: 4   PVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEH 63
           PVKGRHQARKRAVDL+FEAEAR L P EI ++R+ LA++K DVAPLHPYT  VA+G+ +H
Sbjct: 9   PVKGRHQARKRAVDLMFEAEARGLGPGEIADLRTELAETKPDVAPLHPYTAAVARGIDQH 68

Query: 64  TARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTD 123
            A ID+LI SHLQGW LDRLPAVDRAILRV++WELLY               LAKELSTD
Sbjct: 69  AAHIDDLITSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVELAKELSTD 128

Query: 124 DSPGFVNGLLGKVMLVTPQI 143
           DSP FVNG+LG+VMLVTPQI
Sbjct: 129 DSPSFVNGVLGQVMLVTPQI 148


>tr|A0PPH7|A0PPH7_MYCUA Tax_Id=362242 (nusB)SubName: Full=N
           utilization substance protein NusB;[Mycobacterium
           ulcerans]
          Length = 173

 Score =  193 bits (491), Expect = 7e-48
 Identities = 97/140 (69%), Positives = 110/140 (78%)

Query: 4   PVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEH 63
           PVKGRHQARKRAVDL+FEAEAR L P EI ++R+ LA++K DVAPLHPYT  VA+G+ EH
Sbjct: 9   PVKGRHQARKRAVDLMFEAEARGLGPGEIADLRTELAETKPDVAPLHPYTAAVARGIGEH 68

Query: 64  TARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTD 123
            A ID+LI SHLQGW LDRLPAVDRAILRV++WELLY               LAKELSTD
Sbjct: 69  AAHIDDLITSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVELAKELSTD 128

Query: 124 DSPGFVNGLLGKVMLVTPQI 143
           DSP FVNG+LG+VMLV PQI
Sbjct: 129 DSPSFVNGVLGQVMLVRPQI 148


>sp|C1AF01|NUSB_MYCBT Tax_Id=561275 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Mycobacterium bovis]
          Length = 156

 Score =  191 bits (486), Expect = 3e-47
 Identities = 94/140 (67%), Positives = 112/140 (80%)

Query: 4   PVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEH 63
           PV+GRHQARKRAVDLLFEAE R +S  E+++ R+ALA++K D+A LHPYT  VA+GVSEH
Sbjct: 6   PVRGRHQARKRAVDLLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEH 65

Query: 64  TARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTD 123
            A ID+LI +HL+GW LDRLPAVDRAILRVS+WELL+               LAKELSTD
Sbjct: 66  AAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTD 125

Query: 124 DSPGFVNGLLGKVMLVTPQI 143
           DSPGFVNG+LG+VMLVTPQ+
Sbjct: 126 DSPGFVNGVLGQVMLVTPQL 145


>sp|A1KLN0|NUSB_MYCBP Tax_Id=410289 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Mycobacterium bovis]
          Length = 156

 Score =  191 bits (486), Expect = 3e-47
 Identities = 94/140 (67%), Positives = 112/140 (80%)

Query: 4   PVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEH 63
           PV+GRHQARKRAVDLLFEAE R +S  E+++ R+ALA++K D+A LHPYT  VA+GVSEH
Sbjct: 6   PVRGRHQARKRAVDLLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEH 65

Query: 64  TARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTD 123
            A ID+LI +HL+GW LDRLPAVDRAILRVS+WELL+               LAKELSTD
Sbjct: 66  AAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTD 125

Query: 124 DSPGFVNGLLGKVMLVTPQI 143
           DSPGFVNG+LG+VMLVTPQ+
Sbjct: 126 DSPGFVNGVLGQVMLVTPQL 145


>sp|Q7TYC8|NUSB_MYCBO Tax_Id=1765 (nusB)RecName: Full=N utilization
           substance protein B homolog; Short=Protein
           nusB;[Mycobacterium bovis]
          Length = 156

 Score =  191 bits (486), Expect = 3e-47
 Identities = 94/140 (67%), Positives = 112/140 (80%)

Query: 4   PVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEH 63
           PV+GRHQARKRAVDLLFEAE R +S  E+++ R+ALA++K D+A LHPYT  VA+GVSEH
Sbjct: 6   PVRGRHQARKRAVDLLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEH 65

Query: 64  TARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTD 123
            A ID+LI +HL+GW LDRLPAVDRAILRVS+WELL+               LAKELSTD
Sbjct: 66  AAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTD 125

Query: 124 DSPGFVNGLLGKVMLVTPQI 143
           DSPGFVNG+LG+VMLVTPQ+
Sbjct: 126 DSPGFVNGVLGQVMLVTPQL 145


>sp|P95020|NUSB_MYCTU Tax_Id=1773 (nusB)RecName: Full=N utilization
           substance protein B homolog; Short=Protein
           nusB;[Mycobacterium tuberculosis]
          Length = 156

 Score =  188 bits (478), Expect = 2e-46
 Identities = 93/140 (66%), Positives = 111/140 (79%)

Query: 4   PVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEH 63
           PV+GRHQARKRAV LLFEAE R +S  E+++ R+ALA++K D+A LHPYT  VA+GVSEH
Sbjct: 6   PVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEH 65

Query: 64  TARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTD 123
            A ID+LI +HL+GW LDRLPAVDRAILRVS+WELL+               LAKELSTD
Sbjct: 66  AAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTD 125

Query: 124 DSPGFVNGLLGKVMLVTPQI 143
           DSPGFVNG+LG+VMLVTPQ+
Sbjct: 126 DSPGFVNGVLGQVMLVTPQL 145


>sp|A5U5N2|NUSB_MYCTA Tax_Id=419947 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Mycobacterium tuberculosis]
          Length = 156

 Score =  188 bits (478), Expect = 2e-46
 Identities = 93/140 (66%), Positives = 111/140 (79%)

Query: 4   PVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEH 63
           PV+GRHQARKRAV LLFEAE R +S  E+++ R+ALA++K D+A LHPYT  VA+GVSEH
Sbjct: 6   PVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEH 65

Query: 64  TARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTD 123
            A ID+LI +HL+GW LDRLPAVDRAILRVS+WELL+               LAKELSTD
Sbjct: 66  AAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTD 125

Query: 124 DSPGFVNGLLGKVMLVTPQI 143
           DSPGFVNG+LG+VMLVTPQ+
Sbjct: 126 DSPGFVNGVLGQVMLVTPQL 145


>tr|C6DMG3|C6DMG3_MYCTK Tax_Id=478434 SubName: Full=N utilization
           substance protein B nusB;[Mycobacterium tuberculosis]
          Length = 156

 Score =  188 bits (478), Expect = 2e-46
 Identities = 93/140 (66%), Positives = 111/140 (79%)

Query: 4   PVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEH 63
           PV+GRHQARKRAV LLFEAE R +S  E+++ R+ALA++K D+A LHPYT  VA+GVSEH
Sbjct: 6   PVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEH 65

Query: 64  TARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTD 123
            A ID+LI +HL+GW LDRLPAVDRAILRVS+WELL+               LAKELSTD
Sbjct: 66  AAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTD 125

Query: 124 DSPGFVNGLLGKVMLVTPQI 143
           DSPGFVNG+LG+VMLVTPQ+
Sbjct: 126 DSPGFVNGVLGQVMLVTPQL 145


>tr|A5WQE1|A5WQE1_MYCTF Tax_Id=336982 SubName: Full=N utilization
           substance protein B nusB;[Mycobacterium tuberculosis]
          Length = 156

 Score =  188 bits (478), Expect = 2e-46
 Identities = 93/140 (66%), Positives = 111/140 (79%)

Query: 4   PVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEH 63
           PV+GRHQARKRAV LLFEAE R +S  E+++ R+ALA++K D+A LHPYT  VA+GVSEH
Sbjct: 6   PVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEH 65

Query: 64  TARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTD 123
            A ID+LI +HL+GW LDRLPAVDRAILRVS+WELL+               LAKELSTD
Sbjct: 66  AAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTD 125

Query: 124 DSPGFVNGLLGKVMLVTPQI 143
           DSPGFVNG+LG+VMLVTPQ+
Sbjct: 126 DSPGFVNGVLGQVMLVTPQL 145


>tr|A4KNW0|A4KNW0_MYCTU Tax_Id=395095 SubName: Full=N utilization
           substance protein nusB (Nusb protein);[Mycobacterium
           tuberculosis str. Haarlem]
          Length = 156

 Score =  188 bits (478), Expect = 2e-46
 Identities = 93/140 (66%), Positives = 111/140 (79%)

Query: 4   PVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEH 63
           PV+GRHQARKRAV LLFEAE R +S  E+++ R+ALA++K D+A LHPYT  VA+GVSEH
Sbjct: 6   PVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEH 65

Query: 64  TARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTD 123
            A ID+LI +HL+GW LDRLPAVDRAILRVS+WELL+               LAKELSTD
Sbjct: 66  AAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTD 125

Query: 124 DSPGFVNGLLGKVMLVTPQI 143
           DSPGFVNG+LG+VMLVTPQ+
Sbjct: 126 DSPGFVNGVLGQVMLVTPQL 145


>tr|A2VKP3|A2VKP3_MYCTU Tax_Id=348776 SubName: Full=N utilization
           substance protein nusB (Nusb protein);[Mycobacterium
           tuberculosis C]
          Length = 156

 Score =  188 bits (478), Expect = 2e-46
 Identities = 93/140 (66%), Positives = 111/140 (79%)

Query: 4   PVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEH 63
           PV+GRHQARKRAV LLFEAE R +S  E+++ R+ALA++K D+A LHPYT  VA+GVSEH
Sbjct: 6   PVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEH 65

Query: 64  TARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTD 123
            A ID+LI +HL+GW LDRLPAVDRAILRVS+WELL+               LAKELSTD
Sbjct: 66  AAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTD 125

Query: 124 DSPGFVNGLLGKVMLVTPQI 143
           DSPGFVNG+LG+VMLVTPQ+
Sbjct: 126 DSPGFVNGVLGQVMLVTPQL 145


>sp|A0QWR5|NUSB_MYCS2 Tax_Id=246196 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Mycobacterium smegmatis]
          Length = 160

 Score =  180 bits (457), Expect = 6e-44
 Identities = 91/138 (65%), Positives = 111/138 (80%)

Query: 6   KGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTA 65
           +GRHQARKRAVDLLFEAEAR L+   + + R+ALA+ + DVAPL+PYTV+VA+GV+EH A
Sbjct: 8   RGRHQARKRAVDLLFEAEARGLTAEAVADSRAALAEDQDDVAPLNPYTVLVARGVTEHAA 67

Query: 66  RIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDS 125
            ID+LI +HLQGW L+RLPAVDRAILRV++WELL+               LAKELSTD+S
Sbjct: 68  HIDDLISAHLQGWTLERLPAVDRAILRVAVWELLHAEDVPEPVAVDEAVELAKELSTDES 127

Query: 126 PGFVNGLLGKVMLVTPQI 143
           PGFVNG+LG+VMLVTPQI
Sbjct: 128 PGFVNGVLGQVMLVTPQI 145


>sp|A4TBX3|NUSB_MYCGI Tax_Id=350054 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Mycobacterium gilvum]
          Length = 164

 Score =  179 bits (454), Expect = 1e-43
 Identities = 90/139 (64%), Positives = 110/139 (79%), Gaps = 1/139 (0%)

Query: 6   KGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLD-VAPLHPYTVVVAQGVSEHT 64
           +GRHQARKRAVDLLFEAEAR ++  E+ E R+ALA +  D +APL+PYTV VA+GV++H 
Sbjct: 8   RGRHQARKRAVDLLFEAEARGITAAEVAEARNALADNGADDIAPLNPYTVTVARGVTDHA 67

Query: 65  ARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDD 124
           A ID+LI +HLQGW LDRLPAVDRA+LRV++WELL+               LAK+LSTDD
Sbjct: 68  AHIDDLISAHLQGWTLDRLPAVDRAVLRVAVWELLHAVDVPEPVAVDEAVELAKQLSTDD 127

Query: 125 SPGFVNGLLGKVMLVTPQI 143
           SPGFVNG+LG+VMLVTPQI
Sbjct: 128 SPGFVNGVLGQVMLVTPQI 146


>sp|A1T8G0|NUSB_MYCVP Tax_Id=350058 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Mycobacterium vanbaalenii]
          Length = 163

 Score =  179 bits (453), Expect = 2e-43
 Identities = 91/139 (65%), Positives = 109/139 (78%), Gaps = 1/139 (0%)

Query: 6   KGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLD-VAPLHPYTVVVAQGVSEHT 64
           +GRHQARKRAVDLLFEAEAR ++  E+ E R+ALA+ + D +A L+PYTV VAQGV+ H 
Sbjct: 8   RGRHQARKRAVDLLFEAEARGITAAEVAEARNALAEKRTDDIATLNPYTVTVAQGVTAHA 67

Query: 65  ARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDD 124
           A ID+LI +HLQGW LDRLPAVDRAILRV++WELL+               LAK+LSTDD
Sbjct: 68  AHIDDLISAHLQGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAVDEAVELAKQLSTDD 127

Query: 125 SPGFVNGLLGKVMLVTPQI 143
           SPGFVNG+LG+VMLVTPQI
Sbjct: 128 SPGFVNGVLGQVMLVTPQI 146


>sp|Q1B9G7|NUSB_MYCSS Tax_Id=164756 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Mycobacterium sp.]
          Length = 162

 Score =  174 bits (442), Expect = 3e-42
 Identities = 89/140 (63%), Positives = 107/140 (76%)

Query: 4   PVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEH 63
           P +GRHQARKRAVDLLFEAEAR L+  E+   R+ LA ++ DV  L+PYTV VA+GV++H
Sbjct: 6   PDRGRHQARKRAVDLLFEAEARGLTAAEVATSRNKLAGTQPDVTALNPYTVTVARGVTDH 65

Query: 64  TARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTD 123
              ID+LI +HLQGW LDRLPAVDRAILRV++WELL+               LAK+LSTD
Sbjct: 66  RDHIDDLISAHLQGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAVDEAVELAKQLSTD 125

Query: 124 DSPGFVNGLLGKVMLVTPQI 143
           DSPGFVNG+LG+VMLVTPQI
Sbjct: 126 DSPGFVNGVLGQVMLVTPQI 145


>sp|A1UFJ6|NUSB_MYCSK Tax_Id=189918 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Mycobacterium sp.]
          Length = 162

 Score =  174 bits (442), Expect = 3e-42
 Identities = 89/140 (63%), Positives = 107/140 (76%)

Query: 4   PVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEH 63
           P +GRHQARKRAVDLLFEAEAR L+  E+   R+ LA ++ DV  L+PYTV VA+GV++H
Sbjct: 6   PDRGRHQARKRAVDLLFEAEARGLTAAEVATSRNKLAGTQPDVTALNPYTVTVARGVTDH 65

Query: 64  TARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTD 123
              ID+LI +HLQGW LDRLPAVDRAILRV++WELL+               LAK+LSTD
Sbjct: 66  RDHIDDLISAHLQGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAVDEAVELAKQLSTD 125

Query: 124 DSPGFVNGLLGKVMLVTPQI 143
           DSPGFVNG+LG+VMLVTPQI
Sbjct: 126 DSPGFVNGVLGQVMLVTPQI 145


>sp|A3PZ57|NUSB_MYCSJ Tax_Id=164757 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Mycobacterium sp.]
          Length = 162

 Score =  174 bits (442), Expect = 3e-42
 Identities = 89/140 (63%), Positives = 107/140 (76%)

Query: 4   PVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEH 63
           P +GRHQARKRAVDLLFEAEAR L+  E+   R+ LA ++ DV  L+PYTV VA+GV++H
Sbjct: 6   PDRGRHQARKRAVDLLFEAEARGLTAAEVATSRNKLAGTQPDVTALNPYTVTVARGVTDH 65

Query: 64  TARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTD 123
              ID+LI +HLQGW LDRLPAVDRAILRV++WELL+               LAK+LSTD
Sbjct: 66  RDHIDDLISAHLQGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAVDEAVELAKQLSTD 125

Query: 124 DSPGFVNGLLGKVMLVTPQI 143
           DSPGFVNG+LG+VMLVTPQI
Sbjct: 126 DSPGFVNGVLGQVMLVTPQI 145


>tr|B1MCE4|B1MCE4_MYCA9 Tax_Id=561007 SubName: Full=Probable
           transcription antitermination factor NusB;[Mycobacterium
           abscessus]
          Length = 173

 Score =  167 bits (424), Expect = 4e-40
 Identities = 86/137 (62%), Positives = 103/137 (75%)

Query: 7   GRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTAR 66
           GR +ARKRAVDLLFEAEAR+++   + + R ALA SK D+ PL+PYTV VA GV+EH A 
Sbjct: 27  GRRKARKRAVDLLFEAEAREMTAAGVADERRALAASKPDIDPLNPYTVSVAHGVTEHAAH 86

Query: 67  IDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSP 126
           IDELI SHLQGW L RLPAVDRAILRV++WELL+               LAK+LSTD+SP
Sbjct: 87  IDELISSHLQGWTLARLPAVDRAILRVAVWELLHAQDVPEVVAVDEAVELAKQLSTDESP 146

Query: 127 GFVNGLLGKVMLVTPQI 143
            FVNG+LG++MLVTP I
Sbjct: 147 AFVNGVLGQLMLVTPHI 163


>sp|C1B4I5|NUSB_RHOOB Tax_Id=632772 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Rhodococcus opacus]
          Length = 169

 Score =  156 bits (394), Expect = 1e-36
 Identities = 77/136 (56%), Positives = 99/136 (72%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67
           RH+ARKRAVD LFEAEARDL P+++   R+ L+     VAP+ PYTV V  GV+E+  R+
Sbjct: 11  RHKARKRAVDFLFEAEARDLDPVDLATERAELSGKDDSVAPVAPYTVTVVTGVAENLDRL 70

Query: 68  DELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSPG 127
           DE+I SHLQ W L+RLPAVDRAILR+++WEL +               LAK+LSTD+SPG
Sbjct: 71  DEVISSHLQDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKQLSTDESPG 130

Query: 128 FVNGLLGKVMLVTPQI 143
           FVNG+LG+V+LV PQ+
Sbjct: 131 FVNGILGQVVLVAPQV 146


>sp|Q0S0M6|NUSB_RHOSR Tax_Id=101510 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Rhodococcus sp.]
          Length = 169

 Score =  155 bits (393), Expect = 2e-36
 Identities = 77/136 (56%), Positives = 99/136 (72%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67
           RH+ARKRAVD LFEAEARDL P+++   R+ L+     VAP+ PYTV V  GV+E+  R+
Sbjct: 11  RHKARKRAVDFLFEAEARDLDPVDLATERAELSGKDDSVAPVAPYTVTVVTGVAENLDRL 70

Query: 68  DELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSPG 127
           DE+I SHLQ W L+RLPAVDRAILR+++WEL +               LAK+LSTD+SPG
Sbjct: 71  DEVIRSHLQDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKQLSTDESPG 130

Query: 128 FVNGLLGKVMLVTPQI 143
           FVNG+LG+V+LV PQ+
Sbjct: 131 FVNGILGQVVLVAPQV 146


>sp|C0ZZC1|NUSB_RHOE4 Tax_Id=234621 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Rhodococcus erythropolis]
          Length = 165

 Score =  152 bits (385), Expect = 1e-35
 Identities = 77/136 (56%), Positives = 97/136 (71%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67
           RH+ARKRAVD LFEAEARDL P+ +   RS L+     VAP+  YTV +  GV+E+  RI
Sbjct: 11  RHKARKRAVDFLFEAEARDLDPVALASERSDLSVKDDAVAPVAAYTVTLVSGVAENLDRI 70

Query: 68  DELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSPG 127
           D++I SHLQ W L+RLPAVDRAILR+++WEL +               LAK+LSTDDSPG
Sbjct: 71  DQVISSHLQDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKQLSTDDSPG 130

Query: 128 FVNGLLGKVMLVTPQI 143
           FVNG+LG+V+LV PQ+
Sbjct: 131 FVNGILGQVVLVAPQV 146


>tr|C3JST1|C3JST1_RHOER Tax_Id=596309 (nusB)SubName:
           Full=Transcription antitermination factor
           NusB;[Rhodococcus erythropolis SK121]
          Length = 165

 Score =  152 bits (385), Expect = 1e-35
 Identities = 77/136 (56%), Positives = 97/136 (71%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67
           RH+ARKRAVD LFEAEARDL P+ +   RS L+     VAP+  YTV +  GV+E+  RI
Sbjct: 11  RHKARKRAVDFLFEAEARDLDPVALASERSDLSVKDDAVAPVAAYTVTLVSGVAENLDRI 70

Query: 68  DELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSPG 127
           D++I SHLQ W L+RLPAVDRAILR+++WEL +               LAK+LSTDDSPG
Sbjct: 71  DQVISSHLQDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKQLSTDDSPG 130

Query: 128 FVNGLLGKVMLVTPQI 143
           FVNG+LG+V+LV PQ+
Sbjct: 131 FVNGILGQVVLVAPQV 146


>sp|Q5YTL2|NUSB_NOCFA Tax_Id=37329 (nusB)RecName: Full=N utilization
           substance protein B homolog; Short=Protein
           nusB;[Nocardia farcinica]
          Length = 169

 Score =  146 bits (368), Expect = 1e-33
 Identities = 74/136 (54%), Positives = 94/136 (69%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67
           RH+AR+RAVDLLFEAEARD+   +++  R+ LA     VAPLH YT  + +GV++   R+
Sbjct: 18  RHKARRRAVDLLFEAEARDVDAADLLTERADLATRDQSVAPLHAYTRTLVEGVADELERV 77

Query: 68  DELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSPG 127
           D  I S+LQ W L RLPAVDRAILRV++WEL +               LAKELSTDDSP 
Sbjct: 78  DGTIESYLQDWTLSRLPAVDRAILRVAVWELFHATDVPPVVAVDEAVELAKELSTDDSPS 137

Query: 128 FVNGLLGKVMLVTPQI 143
           FVNG+LG+V+LV PQ+
Sbjct: 138 FVNGVLGQVVLVAPQV 153


>tr|D0LCQ6|D0LCQ6_9ACTO Tax_Id=526226 SubName: Full=Transcription
           antitermination factor NusB;[Gordonia bronchialis DSM
           43247]
          Length = 163

 Score =  132 bits (331), Expect = 2e-29
 Identities = 66/136 (48%), Positives = 89/136 (65%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67
           RH+AR+RAVD+LFEAEA+ +SP +++  R  L +S   V  +H YT  V +G+++   +I
Sbjct: 7   RHKARRRAVDILFEAEAKQVSPAQLVAERRELVRSDESVGAIHDYTARVIEGLADDQEQI 66

Query: 68  DELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSPG 127
           D +I SHL+ W L RLPAVDRAILR++ WEL                 LAKELSTDDSP 
Sbjct: 67  DSVISSHLREWTLPRLPAVDRAILRLATWELFNSVDVDTVVIVDEAVELAKELSTDDSPA 126

Query: 128 FVNGLLGKVMLVTPQI 143
           FVNG+L K+  + PQ+
Sbjct: 127 FVNGVLAKIADLAPQV 142


>tr|C2ATL1|C2ATL1_TSUPA Tax_Id=521096 SubName: Full=NusB
           antitermination factor;[Tsukamurella paurometabola DSM
           20162]
          Length = 165

 Score =  125 bits (314), Expect = 2e-27
 Identities = 66/137 (48%), Positives = 86/137 (62%), Gaps = 1/137 (0%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLE-IIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTAR 66
           RH+ARKRAVDLLFE EAR ++ ++ ++  R  LA     V P+  YT  +  GV     +
Sbjct: 16  RHRARKRAVDLLFEVEARGVTDVDGLLAERRTLAADDASVPPVSEYTAQLVTGVDVDREQ 75

Query: 67  IDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSP 126
           +D +I SHL GW L RLPAVDRAILRV++WEL                 LAKELSTD+SP
Sbjct: 76  LDSVITSHLTGWTLARLPAVDRAILRVAVWELFNAPDVPPAVVVDEAVELAKELSTDESP 135

Query: 127 GFVNGLLGKVMLVTPQI 143
            ++NG+LGKV  + PQ+
Sbjct: 136 SYLNGVLGKVATLAPQV 152


>tr|C6W8Z7|C6W8Z7_ACTMD Tax_Id=446462 SubName: Full=NusB
           antitermination factor;[Actinosynnema mirum]
          Length = 139

 Score =  120 bits (301), Expect = 7e-26
 Identities = 61/136 (44%), Positives = 88/136 (64%), Gaps = 4/136 (2%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67
           R +ARKRAVD+++EA+ R +  + ++  R        DV P++ YTV + +GV+ H ARI
Sbjct: 4   RTKARKRAVDVIYEADQRGVDAVTLLSDRVG----STDVPPINEYTVSLVEGVTAHRARI 59

Query: 68  DELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSPG 127
           D+LI  H +GW L R+PAVDRA+LRV ++ELL+               LAK LSTDDSP 
Sbjct: 60  DDLISEHSEGWTLQRMPAVDRAVLRVGLYELLWAADVPDAVAIDEAVELAKGLSTDDSPR 119

Query: 128 FVNGLLGKVMLVTPQI 143
           FVNG+LG++ ++  Q+
Sbjct: 120 FVNGVLGRIAVIADQL 135


>sp|C5C681|NUSB_BEUC1 Tax_Id=471853 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Beutenbergia cavernae]
          Length = 153

 Score =  119 bits (299), Expect = 1e-25
 Identities = 64/142 (45%), Positives = 90/142 (63%), Gaps = 11/142 (7%)

Query: 8   RHQARKRAVDLLFEAEARDLS--------PLEIIEVRSALAKSKLDVAPLHPYTVVVAQG 59
           R +ARKRA+DLL+EA+ + +S         + ++  R A    +   AP+  YTV + +G
Sbjct: 4   RRKARKRALDLLYEADQKAVSGGAPASGDAVALLAERIATPHGE---APMREYTVEIVEG 60

Query: 60  VSEHTARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKE 119
           V+ H ARIDEL+ ++ QGW L+R+PAVDRAILR+ +WELL+               LA E
Sbjct: 61  VAAHQARIDELLETYAQGWSLERMPAVDRAILRIGVWELLFNDDVPDAVAVDEAVALAAE 120

Query: 120 LSTDDSPGFVNGLLGKVMLVTP 141
           LSTDDSP FVNGLLG+++ + P
Sbjct: 121 LSTDDSPTFVNGLLGQLLRLAP 142


>tr|C0UA51|C0UA51_9ACTO Tax_Id=526225 SubName: Full=NusB
           antitermination factor;[Geodermatophilus obscurus DSM
           43160]
          Length = 135

 Score =  118 bits (295), Expect = 4e-25
 Identities = 62/130 (47%), Positives = 85/130 (65%), Gaps = 5/130 (3%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67
           R +ARKRAVD+L+EA+ R   PLE++  R ALA       P+  + V + +GV+EH AR+
Sbjct: 4   RSKARKRAVDVLYEADLRGSDPLELLRERVALASP-----PIPDHAVRLVEGVAEHAARV 58

Query: 68  DELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSPG 127
           DELI  H +GW + RLP VDRAILR++++ELL+               LA+ LSTDDSP 
Sbjct: 59  DELIDRHARGWSIHRLPDVDRAILRMAVFELLWVDDVPDAVVIDEAVELARSLSTDDSPA 118

Query: 128 FVNGLLGKVM 137
           +VNG+LG V+
Sbjct: 119 YVNGVLGGVL 128


>sp|A0JX79|NUSB_ARTS2 Tax_Id=290399 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Arthrobacter sp.]
          Length = 136

 Score =  117 bits (292), Expect = 8e-25
 Identities = 60/139 (43%), Positives = 86/139 (61%), Gaps = 5/139 (3%)

Query: 5   VKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHT 64
           +  R +AR RA+D+LFEAE R LS  +++  R    + K D   ++PYT+ + +GV  H 
Sbjct: 1   MSARGKARNRALDVLFEAEQRSLSAFDVLRSR----REKTDQI-VNPYTLEIVEGVVSHQ 55

Query: 65  ARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDD 124
           A IDE + ++ QGW L+R+P+VDR ILR+  WELLY               LAK LSTD+
Sbjct: 56  AAIDEFLETYSQGWTLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAKTLSTDE 115

Query: 125 SPGFVNGLLGKVMLVTPQI 143
           SP F+NGLLG++  + P +
Sbjct: 116 SPSFINGLLGRLQQLKPSL 134


>tr|C7R4C7|C7R4C7_JONDD Tax_Id=471856 SubName: Full=NusB
           antitermination factor;[Jonesia denitrificans]
          Length = 138

 Score =  117 bits (292), Expect = 8e-25
 Identities = 64/136 (47%), Positives = 90/136 (66%), Gaps = 3/136 (2%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67
           R +ARKRAV++L+EA+ R+LS  +++++R  LA   +  A L  Y V + +GV  H  RI
Sbjct: 4   RSKARKRAVNILYEADQRNLSAAQVLDIR--LADPGVPSA-LPQYAVDLVEGVILHRERI 60

Query: 68  DELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSPG 127
           DE++ ++ +GW L R+PAVDRAILR+  WELLY               LA+ELST+DSP 
Sbjct: 61  DEILETYSRGWPLRRMPAVDRAILRLGTWELLYNDDVPDIVAIDEAVDLARELSTEDSPS 120

Query: 128 FVNGLLGKVMLVTPQI 143
           FVNGLLG+VM + P +
Sbjct: 121 FVNGLLGRVMDIKPAL 136


>tr|C1RPY9|C1RPY9_9CELL Tax_Id=446466 SubName: Full=NusB
           antitermination factor;[Cellulomonas flavigena DSM
           20109]
          Length = 138

 Score =  116 bits (290), Expect = 1e-24
 Identities = 61/136 (44%), Positives = 86/136 (63%), Gaps = 3/136 (2%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67
           R +ARKRA+D+LFEAE R L   E++  R     ++   A L  Y V + +GV EH  RI
Sbjct: 4   RTKARKRALDVLFEAEQRGLDVAELLAKRVVEPGTE---ASLPQYAVELVEGVLEHAERI 60

Query: 68  DELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSPG 127
           DEL+ +H  GW + R+PAVDRA+LR+  WE+L+               LA+ELSTD+SP 
Sbjct: 61  DELLATHSHGWTVARMPAVDRALLRLGAWEILWNDDVPDAVAVDEAVSLARELSTDESPA 120

Query: 128 FVNGLLGKVMLVTPQI 143
           FVNGLLG+++++ P +
Sbjct: 121 FVNGLLGRLVVLKPTL 136


>sp|A6WCD3|NUSB_KINRD Tax_Id=266940 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Kineococcus radiotolerans]
          Length = 136

 Score =  115 bits (289), Expect = 2e-24
 Identities = 58/129 (44%), Positives = 84/129 (65%), Gaps = 5/129 (3%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67
           R +ARKRA+++LFEA+ R L+PL++++ +   A       P+  Y V V +GV EH ARI
Sbjct: 4   RRKARKRALEVLFEADQRGLAPLDVLKDKILRADP-----PVGEYAVTVVEGVVEHQARI 58

Query: 68  DELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSPG 127
           DE++ ++   W LDR+PAVDRA+LR+  WE+LY               +A+ELSTD+SP 
Sbjct: 59  DEVLSTYSMAWPLDRMPAVDRALLRIGTWEVLYAADVPDHVAVSEAVEIAQELSTDESPK 118

Query: 128 FVNGLLGKV 136
           FVNGLL ++
Sbjct: 119 FVNGLLARI 127


>tr|C8XJK9|C8XJK9_NAKMY Tax_Id=479431 SubName: Full=NusB
           antitermination factor;[Nakamurella multipartita]
          Length = 144

 Score =  115 bits (288), Expect = 2e-24
 Identities = 59/141 (41%), Positives = 85/141 (60%), Gaps = 2/141 (1%)

Query: 5   VKGRHQARKRAVDLLFEAEARDLSPLEIIEVR--SALAKSKLDVAPLHPYTVVVAQGVSE 62
           +  R ++RKRA+D+LF AEAR + PL ++  R        +    P+  Y   + +G  E
Sbjct: 1   MSARSKSRKRALDVLFAAEARGVDPLVVLSERMEEPTGPDRHSWTPIGDYAEGLVRGFVE 60

Query: 63  HTARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELST 122
           H  R+D L+  H +GW +DR+PAVDRAILR++++ELLY                AK LST
Sbjct: 61  HQDRVDTLLAEHSRGWTVDRMPAVDRAILRIAVYELLYSTEVPPAVVVNEAVDSAKILST 120

Query: 123 DDSPGFVNGLLGKVMLVTPQI 143
           DDSP FVNG+LG++  +TPQ+
Sbjct: 121 DDSPRFVNGVLGQIAAITPQL 141


>tr|C4EKZ6|C4EKZ6_STRRS Tax_Id=479432 SubName: Full=Transcription
           antitermination factor NusB;[Streptosporangium roseum
           DSM 43021]
          Length = 136

 Score =  114 bits (286), Expect = 4e-24
 Identities = 60/139 (43%), Positives = 84/139 (60%), Gaps = 5/139 (3%)

Query: 5   VKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHT 64
           +  R +AR+RA+D+LFEAEAR   PL ++  R   A+      P++ YT  + +GV  H 
Sbjct: 1   MSARGKARRRALDILFEAEARSQDPLSVLAERLERAEP-----PVNEYTATIVEGVCRHR 55

Query: 65  ARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDD 124
           ARIDELI ++ +GW LDR+PAVDR +LR   +ELL+               LA ELSTD+
Sbjct: 56  ARIDELITTYAEGWTLDRMPAVDRNLLRGGTYELLWMPDVPEGVVISEWVSLASELSTDE 115

Query: 125 SPGFVNGLLGKVMLVTPQI 143
           SP FVNGL+ +   + P +
Sbjct: 116 SPQFVNGLMARFKQLKPSL 134


>tr|C9KAL7|C9KAL7_9MICO Tax_Id=446469 SubName: Full=NusB
           antitermination factor;[Sanguibacter keddieii DSM 10542]
          Length = 138

 Score =  114 bits (284), Expect = 7e-24
 Identities = 61/136 (44%), Positives = 86/136 (63%), Gaps = 3/136 (2%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67
           R +ARKRA+D+LFEAE R L P+ ++  R A   ++   A L  Y+V + +GV E   RI
Sbjct: 4   RTKARKRALDVLFEAEQRHLDPITLLADRVAEPGTE---ASLPQYSVDIVEGVLEQLDRI 60

Query: 68  DELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSPG 127
           DEL+ ++   W LDR+PAVDRA+LR+  WE+L+               L++ LSTDDSP 
Sbjct: 61  DELLETYSHEWSLDRMPAVDRALLRIGTWEILFNDEVPDAVAIDEAVELSRSLSTDDSPV 120

Query: 128 FVNGLLGKVMLVTPQI 143
           FVNGLLG+++ + P I
Sbjct: 121 FVNGLLGRILELKPTI 136


>sp|Q47QY5|NUSB_THEFY Tax_Id=269800 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Thermobifida fusca]
          Length = 142

 Score =  112 bits (280), Expect = 2e-23
 Identities = 61/136 (44%), Positives = 85/136 (62%), Gaps = 5/136 (3%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67
           RH+AR RAV++L+EAE R +   E+IE R A  +      P++ +T  +A  V EH ARI
Sbjct: 10  RHKARVRAVEILYEAEVRGVPVSEVIERRRAQTEP-----PINEFTEQLATRVDEHRARI 64

Query: 68  DELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSPG 127
           DEL+ ++  GW LDR+P VDR ILR+ ++ELL+               +AKELSTD+SP 
Sbjct: 65  DELLETYAIGWTLDRMPVVDRNILRIGVYELLWADDIPDGVAIAEAVAMAKELSTDESPV 124

Query: 128 FVNGLLGKVMLVTPQI 143
           FVNGLL ++M   P +
Sbjct: 125 FVNGLLSRLMEKKPSL 140


>sp|A1R700|NUSB_ARTAT Tax_Id=290340 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Arthrobacter aurescens]
          Length = 136

 Score =  111 bits (278), Expect = 3e-23
 Identities = 57/139 (41%), Positives = 85/139 (61%), Gaps = 5/139 (3%)

Query: 5   VKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHT 64
           +  R +AR RA+++LFEAE R +S  + +  R    + K D+  ++PYTV + +GV    
Sbjct: 1   MSARGKARSRALEVLFEAEQRSVSAFDAMTAR----REKTDLV-INPYTVEIVEGVVSMQ 55

Query: 65  ARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDD 124
           A IDE + ++ QGW L+R+P+VDR ILR+  WELLY               LAK +STD+
Sbjct: 56  ATIDEFLQTYAQGWTLERMPSVDRIILRIGAWELLYNDEVPDGVAVSEAVALAKTMSTDE 115

Query: 125 SPGFVNGLLGKVMLVTPQI 143
           SP F+NGLLG++  + P +
Sbjct: 116 SPAFINGLLGRLQKLKPSL 134


>tr|B2GI93|B2GI93_KOCRD Tax_Id=378753 (nusB)SubName:
           Full=Transcription antitermination protein NusB;[Kocuria
           rhizophila]
          Length = 138

 Score =  111 bits (278), Expect = 3e-23
 Identities = 62/137 (45%), Positives = 84/137 (61%), Gaps = 7/137 (5%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVA-PLHPYTVVVAQGVSEHTAR 66
           R +AR RAV++LFEAE R+ S      VR AL + + + + P++PYTV + +GV E    
Sbjct: 5   RSKARVRAVEILFEAEQRNES------VRDALVRRRENSSSPINPYTVEILEGVDERRED 58

Query: 67  IDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSP 126
           IDE + ++ QGW L R+PAVDR  LRV  WELLY               + ++LSTDDSP
Sbjct: 59  IDEFLETYSQGWALGRMPAVDRNALRVGAWELLYNSEIPDGVAVAEAVAVTRQLSTDDSP 118

Query: 127 GFVNGLLGKVMLVTPQI 143
            FVNGLLG++  V P +
Sbjct: 119 RFVNGLLGRLQKVKPSL 135


>tr|C4RHP4|C4RHP4_9ACTO Tax_Id=219305 SubName: Full=Transcription
           antitermination factor nusB;[Micromonospora sp. ATCC
           39149]
          Length = 136

 Score =  111 bits (277), Expect = 4e-23
 Identities = 59/133 (44%), Positives = 84/133 (63%), Gaps = 10/133 (7%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHP----YTVVVAQGVSEH 63
           R +ARKRA+D+LFEA+ RD  P+E+      LA     +   HP    Y V + +GV+ H
Sbjct: 4   RRKARKRALDVLFEADLRDRPPVEV------LAGYVERIEKPHPEHLGYAVGLVEGVAAH 57

Query: 64  TARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTD 123
             RIDELI S+ +GW LDR+PAVDR + R++++ELLY               LA+++STD
Sbjct: 58  LGRIDELIASYAEGWTLDRMPAVDRNLARIAVYELLYVDELDDAVAISEAVELARQMSTD 117

Query: 124 DSPGFVNGLLGKV 136
           DSP F+NG+LG++
Sbjct: 118 DSPRFLNGVLGRI 130


>tr|C4LIU4|C4LIU4_CORK4 Tax_Id=645127 SubName: Full=N utilization
           substance protein B;[Corynebacterium kroppenstedtii]
          Length = 192

 Score =  110 bits (276), Expect = 6e-23
 Identities = 59/131 (45%), Positives = 82/131 (62%), Gaps = 2/131 (1%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAK-SKLDVAPLHPYTVVVAQGVSEHTAR 66
           R++AR+RAVD+LFEAE RD  P+ ++E R  L++ S+  V P+  YT  +  GV+E+   
Sbjct: 49  RYKARRRAVDILFEAEFRDQDPVYVVEQRRELSQDSESGVLPVSDYTATIVSGVAENLDG 108

Query: 67  IDELIISHLQG-WKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDS 125
           ID  I SHL   W+LDR+PAVDRA++RVS WELL+               LA E STD +
Sbjct: 109 IDSAIASHLSSTWRLDRIPAVDRAVMRVSTWELLHNEEVPPKVAVSEGIELASEYSTDVA 168

Query: 126 PGFVNGLLGKV 136
           P +VN +L  +
Sbjct: 169 PAYVNAVLDDI 179


>tr|C0V667|C0V667_9MICO Tax_Id=446471 SubName: Full=NusB
           antitermination factor;[Xylanimonas cellulosilytica DSM
           15894]
          Length = 138

 Score =  110 bits (276), Expect = 6e-23
 Identities = 56/136 (41%), Positives = 83/136 (61%), Gaps = 3/136 (2%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67
           R +ARKRA DLLFEAE R    + ++  R    ++ +  +P+  Y   + +GV  H  RI
Sbjct: 4   RTKARKRAADLLFEAEQRRWDAVRLLRDR---IETPVSESPVPQYAADIVEGVVAHRERI 60

Query: 68  DELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSPG 127
           DEL+ ++  GW ++R+PAVDRA+LR+  WE+L+               LA +LSTDDSP 
Sbjct: 61  DELLETYSNGWTIERMPAVDRALLRIGAWEILFNDDVPDAVAIDEAVDLAAQLSTDDSPS 120

Query: 128 FVNGLLGKVMLVTPQI 143
           FVNGLLG+++ + P +
Sbjct: 121 FVNGLLGRIVELKPTL 136


>sp|B8H8V2|NUSB_ARTCA Tax_Id=452863 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Arthrobacter chlorophenolicus]
          Length = 136

 Score =  110 bits (275), Expect = 8e-23
 Identities = 57/139 (41%), Positives = 83/139 (59%), Gaps = 5/139 (3%)

Query: 5   VKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHT 64
           +  R +AR RA+D+LFEAE R  S  +++  R    + K D   ++PYT+ + +GV    
Sbjct: 1   MSARGKARSRALDVLFEAEQRSASAFDVLRAR----REKTDQI-VNPYTLEIVEGVVSRQ 55

Query: 65  ARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDD 124
             IDE + ++ QGW L+R+P+VDR ILR+  WELLY               LAK LSTD+
Sbjct: 56  QAIDEFLETYSQGWSLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAKTLSTDE 115

Query: 125 SPGFVNGLLGKVMLVTPQI 143
           SP F+NGLLG++  + P +
Sbjct: 116 SPQFINGLLGRLQQLKPSL 134


>tr|C7MSI9|C7MSI9_SACVD Tax_Id=471857 SubName: Full=Transcription
           antitermination factor NusB;[Saccharomonospora viridis]
          Length = 153

 Score =  110 bits (275), Expect = 8e-23
 Identities = 57/136 (41%), Positives = 83/136 (61%), Gaps = 4/136 (2%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67
           R  +R+RAV+LL+EA  R   P  ++  R        DV P+  YT+ + +GVSE+  RI
Sbjct: 18  RRASRQRAVELLYEAALRKTDPATLMSERLGSP----DVDPISDYTITLVEGVSENRERI 73

Query: 68  DELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSPG 127
           DEL+  + QGW L+R+P VD A+LRV ++ELL+               +AK+LSTDDSP 
Sbjct: 74  DELLAEYAQGWSLERMPPVDLAVLRVGLYELLWLDDVPDPVAIDEAVGIAKQLSTDDSPR 133

Query: 128 FVNGLLGKVMLVTPQI 143
           FVNG+LG++  V  ++
Sbjct: 134 FVNGVLGRIGTVAERL 149


>sp|A1SJD8|NUSB_NOCSJ Tax_Id=196162 (nusB)RecName: Full=N
           utilization substance protein B homolog; Short=Protein
           nusB;[Nocardioides sp.]
          Length = 135

 Score =  109 bits (273), Expect = 1e-22
 Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 5/139 (3%)

Query: 5   VKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHT 64
           +  R +ARKRA+D+LF ++ R    +  ++   A+A+ +    P + YT  + +GV EH 
Sbjct: 1   MSARSKARKRALDVLFASDVRGEDAVAALD--RAIAEGE---GPTNDYTATLVRGVVEHQ 55

Query: 65  ARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDD 124
           ARIDEL+ S+  GW LDR+PAVDR +LR+ +WELLY               L  +LSTD+
Sbjct: 56  ARIDELLSSYSHGWALDRMPAVDRNVLRLGVWELLYADDVPDAVAVSEAMALVTDLSTDE 115

Query: 125 SPGFVNGLLGKVMLVTPQI 143
           SP FVNG+LG ++   P +
Sbjct: 116 SPQFVNGILGSIVRNKPSL 134


>tr|A9WSB5|A9WSB5_RENSM Tax_Id=288705 (nusB)SubName:
           Full=Transcription antitermination factor;[Renibacterium
           salmoninarum]
          Length = 143

 Score =  109 bits (273), Expect = 1e-22
 Identities = 56/136 (41%), Positives = 85/136 (62%), Gaps = 5/136 (3%)

Query: 8   RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67
           R +AR+RA+D+LFEA  RD+S  E++++R    + + D   ++PY+V +  GV +    I
Sbjct: 11  RSKARRRALDILFEAGQRDVSAAEVLKLR----RERTDQI-INPYSVDIIDGVGQKQEEI 65

Query: 68  DELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTDDSPG 127
           DE + ++ QGW L+R+PAVD   LR+  WELLY               LAK+LSTD+SP 
Sbjct: 66  DEFLQTYAQGWTLERMPAVDLIALRIGAWELLYNDDVPDAVAVSEAVELAKQLSTDESPQ 125

Query: 128 FVNGLLGKVMLVTPQI 143
           F+NGLLG++  + P +
Sbjct: 126 FINGLLGRLQQLKPTL 141


>tr|C1WUI7|C1WUI7_9ACTO Tax_Id=479435 SubName: Full=Transcription
           antitermination factor NusB;[Kribbella flavida DSM
           17836]
          Length = 136

 Score =  109 bits (273), Expect = 1e-22
 Identities = 58/140 (41%), Positives = 87/140 (62%), Gaps = 7/140 (5%)

Query: 5   VKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDV-APLHPYTVVVAQGVSEH 63
           +  R +ARKRA+D+L+E+E R L       V   LA    D   P++ +TV + +GV+EH
Sbjct: 1   MSARSKARKRALDVLYESEVRGLP------VGGTLADRVADNDPPVNEFTVALVEGVAEH 54

Query: 64  TARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYXXXXXXXXXXXXXXXLAKELSTD 123
            A ID+L+ +H  GW LDR+PAVDR +LR+ ++ELL+               LA++LSTD
Sbjct: 55  IAAIDDLLSTHSVGWTLDRMPAVDRNVLRIGVYELLFDEQVPDVVAVSEAVALARDLSTD 114

Query: 124 DSPGFVNGLLGKVMLVTPQI 143
           +SP FVNGLL +++ + P +
Sbjct: 115 ESPAFVNGLLARLLQLKPTL 134


  Database: Amellifera_nr
    Posted date:  Jan 15, 2010  5:10 AM
  Number of letters in database: 3,808,957,724
  Number of sequences in database:  11,153,314
  
Lambda     K      H
   0.317    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11153314
Number of Hits to DB: 1,152,050,315
Number of extensions: 34187122
Number of successful extensions: 76884
Number of sequences better than 10.0: 1409
Number of HSP's gapped: 76578
Number of HSP's successfully gapped: 1409
Length of query: 190
Length of database: 3,808,957,724
Length adjustment: 129
Effective length of query: 61
Effective length of database: 2,370,180,218
Effective search space: 144580993298
Effective search space used: 144580993298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)