BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ML0542 (110 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,153,314 sequences; 3,808,957,724 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|Q9CCQ6|RPOZ_MYCLE Tax_Id=1769 (rpoZ)RecName: Full=DNA-directe... 219 1e-55 sp|B8ZUM0|RPOZ_MYCLB Tax_Id=561304 (rpoZ)RecName: Full=DNA-direc... 219 1e-55 tr|B2HP48|B2HP48_MYCMM Tax_Id=216594 (rpoZ)SubName: Full=DNA-dir... 203 6e-51 tr|A0PPJ6|A0PPJ6_MYCUA Tax_Id=362242 (rpoZ)SubName: Full=DNA-dir... 202 7e-51 sp|P66721|RPOZ_MYCTU Tax_Id=1773 (rpoZ)RecName: Full=DNA-directe... 197 2e-49 sp|A5U292|RPOZ_MYCTA Tax_Id=419947 (rpoZ)RecName: Full=DNA-direc... 197 2e-49 sp|C1AN35|RPOZ_MYCBT Tax_Id=561275 (rpoZ)RecName: Full=DNA-direc... 197 2e-49 sp|A1KIH9|RPOZ_MYCBP Tax_Id=410289 (rpoZ)RecName: Full=DNA-direc... 197 2e-49 sp|P66722|RPOZ_MYCBO Tax_Id=1765 (rpoZ)RecName: Full=DNA-directe... 197 2e-49 tr|C6DTJ4|C6DTJ4_MYCTK Tax_Id=478434 SubName: Full=DNA-directed ... 197 2e-49 tr|A5WM73|A5WM73_MYCTF Tax_Id=336982 SubName: Full=DNA-directed ... 197 2e-49 tr|A4KGV1|A4KGV1_MYCTU Tax_Id=395095 SubName: Full=DNA-directed ... 197 2e-49 tr|A2VHS5|A2VHS5_MYCTU Tax_Id=348776 SubName: Full=DNA-directed ... 197 2e-49 sp|Q741G7|RPOZ_MYCPA Tax_Id=1770 (rpoZ)RecName: Full=DNA-directe... 186 7e-46 sp|A0QI28|RPOZ_MYCA1 Tax_Id=243243 (rpoZ)RecName: Full=DNA-direc... 184 2e-45 sp|A1T8H5|RPOZ_MYCVP Tax_Id=350058 (rpoZ)RecName: Full=DNA-direc... 169 1e-40 tr|Q1B9F5|Q1B9F5_MYCSS Tax_Id=164756 SubName: Full=DNA-directed ... 167 3e-40 tr|A4TBZ2|A4TBZ2_MYCGI Tax_Id=350054 SubName: Full=DNA-directed ... 167 3e-40 tr|A3PZ69|A3PZ69_MYCSJ Tax_Id=164757 SubName: Full=DNA-directed ... 167 3e-40 tr|A1UFK8|A1UFK8_MYCSK Tax_Id=189918 SubName: Full=DNA-directed ... 167 3e-40 sp|C1B4J5|RPOZ_RHOOB Tax_Id=632772 (rpoZ)RecName: Full=DNA-direc... 164 2e-39 sp|Q0S0L6|RPOZ_RHOSR Tax_Id=101510 (rpoZ)RecName: Full=DNA-direc... 163 6e-39 sp|A0QWT1|RPOZ_MYCS2 Tax_Id=246196 (rpoZ)RecName: Full=DNA-direc... 162 8e-39 tr|Q4VDJ2|Q4VDJ2_MYCSM Tax_Id=1772 (rpoZ)SubName: Full=DNA-direc... 162 8e-39 sp|C0ZZD2|RPOZ_RHOE4 Tax_Id=234621 (rpoZ)RecName: Full=DNA-direc... 162 1e-38 tr|C3JSU3|C3JSU3_RHOER Tax_Id=596309 (rpoZ)SubName: Full=DNA-dir... 162 1e-38 tr|D0LCR7|D0LCR7_9ACTO Tax_Id=526226 SubName: Full=DNA-directed ... 159 1e-37 sp|Q5YTM8|RPOZ_NOCFA Tax_Id=37329 (rpoZ)RecName: Full=DNA-direct... 156 6e-37 tr|C2ATJ9|C2ATJ9_TSUPA Tax_Id=521096 SubName: Full=DNA-directed ... 154 2e-36 tr|B1MCD0|B1MCD0_MYCA9 Tax_Id=561007 SubName: Full=DNA-directed ... 154 3e-36 tr|C6W8Y6|C6W8Y6_ACTMD Tax_Id=446462 SubName: Full=DNA-directed ... 140 6e-32 sp|A4FBI2|RPOZ_SACEN Tax_Id=405948 (rpoZ)RecName: Full=DNA-direc... 137 3e-31 tr|C7MSK0|C7MSK0_SACVD Tax_Id=471857 SubName: Full=DNA-directed ... 136 7e-31 sp|B1VDN5|RPOZ_CORU7 Tax_Id=504474 (rpoZ)RecName: Full=DNA-direc... 130 5e-29 sp|Q4JVH5|RPOZ_CORJK Tax_Id=306537 (rpoZ)RecName: Full=DNA-direc... 128 2e-28 tr|C8RTC4|C8RTC4_CORJE Tax_Id=525262 SubName: Full=DNA-directed ... 128 2e-28 sp|P60333|RPOZ_CORDI Tax_Id=1717 (rpoZ)RecName: Full=DNA-directe... 125 1e-27 tr|C8XII5|C8XII5_NAKMY Tax_Id=479431 SubName: Full=DNA-directed ... 122 1e-26 tr|C0WL27|C0WL27_9CORY Tax_Id=525260 (rpoZ)SubName: Full=DNA-dir... 122 2e-26 tr|C0UA72|C0UA72_9ACTO Tax_Id=526225 SubName: Full=DNA-directed ... 122 2e-26 tr|C6RA23|C6RA23_9CORY Tax_Id=553206 (rpoZ)SubName: Full=DNA-dir... 120 5e-26 tr|C2BPF6|C2BPF6_9CORY Tax_Id=525264 (rpoZ)SubName: Full=DNA-dir... 120 5e-26 tr|C5VC77|C5VC77_9CORY Tax_Id=553207 (rpoZ)SubName: Full=DNA-dir... 120 6e-26 tr|C0E315|C0E315_9CORY Tax_Id=566549 SubName: Full=Putative unch... 120 6e-26 tr|C2CMP9|C2CMP9_CORST Tax_Id=525268 (rpoZ)SubName: Full=DNA-dir... 119 1e-25 sp|Q8NQ43|RPOZ_CORGL Tax_Id=1718 (rpoZ)RecName: Full=DNA-directe... 119 1e-25 tr|A4QEI0|A4QEI0_CORGB Tax_Id=340322 SubName: Full=Putative unch... 119 1e-25 sp|Q8FT46|RPOZ_COREF Tax_Id=152794 (rpoZ)RecName: Full=DNA-direc... 118 2e-25 tr|C8NU99|C8NU99_9CORY Tax_Id=585529 SubName: Full=DNA-directed ... 118 2e-25 tr|C0XSU8|C0XSU8_9CORY Tax_Id=525263 (rpoZ)SubName: Full=DNA-dir... 118 2e-25 >sp|Q9CCQ6|RPOZ_MYCLE Tax_Id=1769 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium leprae] Length = 110 Score = 219 bits (557), Expect = 1e-55 Identities = 109/110 (99%), Positives = 110/110 (100%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE Sbjct: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 >sp|B8ZUM0|RPOZ_MYCLB Tax_Id=561304 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium leprae] Length = 110 Score = 219 bits (557), Expect = 1e-55 Identities = 109/110 (99%), Positives = 110/110 (100%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE Sbjct: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 >tr|B2HP48|B2HP48_MYCMM Tax_Id=216594 (rpoZ)SubName: Full=DNA-directed RNA polymerase (Omega chain) RpoZ;[Mycobacterium marinum] Length = 110 Score = 203 bits (516), Expect = 6e-51 Identities = 101/110 (91%), Positives = 105/110 (95%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SIPQS+ L+AV AVDQFDPSSGG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 >tr|A0PPJ6|A0PPJ6_MYCUA Tax_Id=362242 (rpoZ)SubName: Full=DNA-directed RNA polymerase (Omega chain) RpoZ;[Mycobacterium ulcerans] Length = 110 Score = 202 bits (515), Expect = 7e-51 Identities = 101/110 (91%), Positives = 105/110 (95%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SIPQS+ L+AV AVDQFDPSSGG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSIPQSDAPLAAVSAVDQFDPSSGGIGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 >sp|P66721|RPOZ_MYCTU Tax_Id=1773 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium tuberculosis] Length = 110 Score = 197 bits (502), Expect = 2e-49 Identities = 99/110 (90%), Positives = 104/110 (94%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QS+ SL+AV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >sp|A5U292|RPOZ_MYCTA Tax_Id=419947 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium tuberculosis] Length = 110 Score = 197 bits (502), Expect = 2e-49 Identities = 99/110 (90%), Positives = 104/110 (94%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QS+ SL+AV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >sp|C1AN35|RPOZ_MYCBT Tax_Id=561275 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium bovis] Length = 110 Score = 197 bits (502), Expect = 2e-49 Identities = 99/110 (90%), Positives = 104/110 (94%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QS+ SL+AV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >sp|A1KIH9|RPOZ_MYCBP Tax_Id=410289 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium bovis] Length = 110 Score = 197 bits (502), Expect = 2e-49 Identities = 99/110 (90%), Positives = 104/110 (94%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QS+ SL+AV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >sp|P66722|RPOZ_MYCBO Tax_Id=1765 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium bovis] Length = 110 Score = 197 bits (502), Expect = 2e-49 Identities = 99/110 (90%), Positives = 104/110 (94%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QS+ SL+AV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >tr|C6DTJ4|C6DTJ4_MYCTK Tax_Id=478434 SubName: Full=DNA-directed RNA polymerase subunit omega rpoZ;[Mycobacterium tuberculosis] Length = 110 Score = 197 bits (502), Expect = 2e-49 Identities = 99/110 (90%), Positives = 104/110 (94%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QS+ SL+AV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >tr|A5WM73|A5WM73_MYCTF Tax_Id=336982 SubName: Full=DNA-directed RNA polymerase omega subunit rpoZ;[Mycobacterium tuberculosis] Length = 110 Score = 197 bits (502), Expect = 2e-49 Identities = 99/110 (90%), Positives = 104/110 (94%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QS+ SL+AV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >tr|A4KGV1|A4KGV1_MYCTU Tax_Id=395095 SubName: Full=DNA-directed RNA polymerase (Omega chain) rpoZ;[Mycobacterium tuberculosis str. Haarlem] Length = 110 Score = 197 bits (502), Expect = 2e-49 Identities = 99/110 (90%), Positives = 104/110 (94%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QS+ SL+AV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >tr|A2VHS5|A2VHS5_MYCTU Tax_Id=348776 SubName: Full=DNA-directed RNA polymerase (Omega chain) rpoZ;[Mycobacterium tuberculosis C] Length = 110 Score = 197 bits (502), Expect = 2e-49 Identities = 99/110 (90%), Positives = 104/110 (94%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QS+ SL+AV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >sp|Q741G7|RPOZ_MYCPA Tax_Id=1770 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium paratuberculosis] Length = 108 Score = 186 bits (472), Expect = 7e-46 Identities = 92/106 (86%), Positives = 100/106 (94%), Gaps = 2/106 (1%) Query: 5 QSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQI 64 QS+ +L+AV+ D+FDPS+GG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQI Sbjct: 5 QSDAALAAVL--DRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQI 62 Query: 65 NDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ND+YNQLGEGILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE Sbjct: 63 NDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 108 >sp|A0QI28|RPOZ_MYCA1 Tax_Id=243243 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium avium] Length = 108 Score = 184 bits (468), Expect = 2e-45 Identities = 92/106 (86%), Positives = 99/106 (93%), Gaps = 2/106 (1%) Query: 5 QSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQI 64 QS+ +L+AV D+FDPS+GG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQI Sbjct: 5 QSDAALAAV--PDRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQI 62 Query: 65 NDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ND+YNQLGEGILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE Sbjct: 63 NDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 108 >sp|A1T8H5|RPOZ_MYCVP Tax_Id=350058 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium vanbaalenii] Length = 104 Score = 169 bits (427), Expect = 1e-40 Identities = 87/110 (79%), Positives = 94/110 (85%), Gaps = 6/110 (5%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +S P ++T L+AV DPS+ YDTPLGITNPPIDELLDR SSKYALVIYAAKR Sbjct: 1 MSTPHADTRLAAV----DIDPSAAS--AYDTPLGITNPPIDELLDRASSKYALVIYAAKR 54 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLG+GILEYVGPLVEPGLQEKPLSIAMREIH DLLEHTEGE Sbjct: 55 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIAMREIHGDLLEHTEGE 104 >tr|Q1B9F5|Q1B9F5_MYCSS Tax_Id=164756 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Mycobacterium sp.] Length = 107 Score = 167 bits (423), Expect = 3e-40 Identities = 84/110 (76%), Positives = 92/110 (83%), Gaps = 3/110 (2%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +S P ++ L+AV D + G YDTPLGITNPPIDELLDR SSKYALVIYAAKR Sbjct: 1 MSTPHADAQLTAV---DDLTIDAAAAGAYDTPLGITNPPIDELLDRASSKYALVIYAAKR 57 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE Sbjct: 58 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHEDLLEHTEGE 107 >tr|A4TBZ2|A4TBZ2_MYCGI Tax_Id=350054 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Mycobacterium gilvum] Length = 107 Score = 167 bits (423), Expect = 3e-40 Identities = 87/110 (79%), Positives = 94/110 (85%), Gaps = 3/110 (2%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +S P + T+ S + A D DPS+ YDTPLGITNPPIDELLDR SSKYALVIYAAKR Sbjct: 1 MSTPLTPTADSRLAAAD-IDPSAAS--AYDTPLGITNPPIDELLDRASSKYALVIYAAKR 57 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLG+GILEYVGPLVEPGLQEKPLSIAMREIH DLLEHTEGE Sbjct: 58 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIAMREIHGDLLEHTEGE 107 >tr|A3PZ69|A3PZ69_MYCSJ Tax_Id=164757 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Mycobacterium sp.] Length = 107 Score = 167 bits (423), Expect = 3e-40 Identities = 84/110 (76%), Positives = 92/110 (83%), Gaps = 3/110 (2%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +S P ++ L+AV D + G YDTPLGITNPPIDELLDR SSKYALVIYAAKR Sbjct: 1 MSTPHADAQLTAV---DDLTIDAAAAGAYDTPLGITNPPIDELLDRASSKYALVIYAAKR 57 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE Sbjct: 58 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHEDLLEHTEGE 107 >tr|A1UFK8|A1UFK8_MYCSK Tax_Id=189918 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Mycobacterium sp.] Length = 107 Score = 167 bits (423), Expect = 3e-40 Identities = 84/110 (76%), Positives = 92/110 (83%), Gaps = 3/110 (2%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +S P ++ L+AV D + G YDTPLGITNPPIDELLDR SSKYALVIYAAKR Sbjct: 1 MSTPHADAQLTAV---DDLTIDAAAAGAYDTPLGITNPPIDELLDRASSKYALVIYAAKR 57 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE Sbjct: 58 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHEDLLEHTEGE 107 >sp|C1B4J5|RPOZ_RHOOB Tax_Id=632772 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Rhodococcus opacus] Length = 101 Score = 164 bits (416), Expect = 2e-39 Identities = 82/101 (81%), Positives = 88/101 (87%) Query: 10 LSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYN 69 +S+ AV PS G YDTPLGITNPPIDELL R SSKYALVIYAAKRARQIND+YN Sbjct: 1 MSSTPAVASATPSHGALPAYDTPLGITNPPIDELLARTSSKYALVIYAAKRARQINDYYN 60 Query: 70 QLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 QLG+GILEYVGPLVEPGLQEKPLSIA+REIH+DLLEHTEGE Sbjct: 61 QLGDGILEYVGPLVEPGLQEKPLSIALREIHSDLLEHTEGE 101 >sp|Q0S0L6|RPOZ_RHOSR Tax_Id=101510 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Rhodococcus sp.] Length = 101 Score = 163 bits (412), Expect = 6e-39 Identities = 81/101 (80%), Positives = 87/101 (86%) Query: 10 LSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYN 69 +S+ A PS G YDTPLGITNPPIDELL R SSKYALVIYAAKRARQIND+YN Sbjct: 1 MSSTPAAASATPSHGALPAYDTPLGITNPPIDELLARTSSKYALVIYAAKRARQINDYYN 60 Query: 70 QLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 QLG+GILEYVGPLVEPGLQEKPLSIA+REIH+DLLEHTEGE Sbjct: 61 QLGDGILEYVGPLVEPGLQEKPLSIALREIHSDLLEHTEGE 101 >sp|A0QWT1|RPOZ_MYCS2 Tax_Id=246196 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium smegmatis] Length = 107 Score = 162 bits (411), Expect = 8e-39 Identities = 82/110 (74%), Positives = 89/110 (80%), Gaps = 3/110 (2%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +S P ++ L+A D S YDTPLGITNPPIDELL R SSKYALVIYAAKR Sbjct: 1 MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE Sbjct: 58 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107 >tr|Q4VDJ2|Q4VDJ2_MYCSM Tax_Id=1772 (rpoZ)SubName: Full=DNA-directed RNA polymerase omega subunit; EC=2.7.7.6;[Mycobacterium smegmatis] Length = 107 Score = 162 bits (411), Expect = 8e-39 Identities = 82/110 (74%), Positives = 89/110 (80%), Gaps = 3/110 (2%) Query: 1 VSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +S P ++ L+A D S YDTPLGITNPPIDELL R SSKYALVIYAAKR Sbjct: 1 MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57 Query: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE Sbjct: 58 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107 >sp|C0ZZD2|RPOZ_RHOE4 Tax_Id=234621 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Rhodococcus erythropolis] Length = 99 Score = 162 bits (409), Expect = 1e-38 Identities = 80/92 (86%), Positives = 86/92 (93%), Gaps = 3/92 (3%) Query: 22 SSGGQGV---YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEY 78 S+ GQG YDTPLGITNPPIDELL+R SSKYALVIY+AKRARQIND+YNQLG+GILEY Sbjct: 8 SAAGQGALPAYDTPLGITNPPIDELLERTSSKYALVIYSAKRARQINDYYNQLGDGILEY 67 Query: 79 VGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 VGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 68 VGPLVEPGLQEKPLSIALREIHADLLEHTEGE 99 >tr|C3JSU3|C3JSU3_RHOER Tax_Id=596309 (rpoZ)SubName: Full=DNA-directed RNA polymerase, omega subunit; EC=2.7.7.6;[Rhodococcus erythropolis SK121] Length = 99 Score = 162 bits (409), Expect = 1e-38 Identities = 80/92 (86%), Positives = 86/92 (93%), Gaps = 3/92 (3%) Query: 22 SSGGQGV---YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEY 78 S+ GQG YDTPLGITNPPIDELL+R SSKYALVIY+AKRARQIND+YNQLG+GILEY Sbjct: 8 SAAGQGALPAYDTPLGITNPPIDELLERTSSKYALVIYSAKRARQINDYYNQLGDGILEY 67 Query: 79 VGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 VGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 68 VGPLVEPGLQEKPLSIALREIHADLLEHTEGE 99 >tr|D0LCR7|D0LCR7_9ACTO Tax_Id=526226 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Gordonia bronchialis DSM 43247] Length = 99 Score = 159 bits (401), Expect = 1e-37 Identities = 76/82 (92%), Positives = 81/82 (98%) Query: 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEPGLQ 88 YDTPLGITNPPID+LL+R SSKYALVIYAAKRARQIND+YNQLG+GILEYVGPLVEPGLQ Sbjct: 18 YDTPLGITNPPIDDLLERASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQ 77 Query: 89 EKPLSIAMREIHADLLEHTEGE 110 EKPLSIAMREIH+DLLEHTEGE Sbjct: 78 EKPLSIAMREIHSDLLEHTEGE 99 >sp|Q5YTM8|RPOZ_NOCFA Tax_Id=37329 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Nocardia farcinica] Length = 91 Score = 156 bits (395), Expect = 6e-37 Identities = 73/82 (89%), Positives = 81/82 (98%) Query: 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEPGLQ 88 YDTP+G+TNPPIDELL+R SSKYALVIYAAKRARQIND+YNQLG+GILEYVGPLVEPGLQ Sbjct: 10 YDTPIGLTNPPIDELLERTSSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQ 69 Query: 89 EKPLSIAMREIHADLLEHTEGE 110 EKPLS+A+REIHADLLEH+EGE Sbjct: 70 EKPLSVALREIHADLLEHSEGE 91 >tr|C2ATJ9|C2ATJ9_TSUPA Tax_Id=521096 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Tsukamurella paurometabola DSM 20162] Length = 91 Score = 154 bits (390), Expect = 2e-36 Identities = 75/85 (88%), Positives = 78/85 (91%) Query: 26 QGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEP 85 + VYD PLGITNPPIDELLDR SSKYALVIYAAKRARQIND+YN L +GILEYVGPLVEP Sbjct: 7 EAVYDQPLGITNPPIDELLDRTSSKYALVIYAAKRARQINDYYNSLSDGILEYVGPLVEP 66 Query: 86 GLQEKPLSIAMREIHADLLEHTEGE 110 GL EKPLSIAMREIH DLLEHTEGE Sbjct: 67 GLHEKPLSIAMREIHEDLLEHTEGE 91 >tr|B1MCD0|B1MCD0_MYCA9 Tax_Id=561007 SubName: Full=DNA-directed RNA polymerase omega subunit;[Mycobacterium abscessus] Length = 102 Score = 154 bits (389), Expect = 3e-36 Identities = 75/81 (92%), Positives = 78/81 (96%) Query: 30 DTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEPGLQE 89 DTPLGITNPPIDELL R SSKYALVIYAAKRARQIND+YNQLG+GILEYVGPLVEPGLQE Sbjct: 22 DTPLGITNPPIDELLARASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQE 81 Query: 90 KPLSIAMREIHADLLEHTEGE 110 KPLSIA+REIH DLLEHTEGE Sbjct: 82 KPLSIALREIHGDLLEHTEGE 102 >tr|C6W8Y6|C6W8Y6_ACTMD Tax_Id=446462 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Actinosynnema mirum] Length = 92 Score = 140 bits (352), Expect = 6e-32 Identities = 68/80 (85%), Positives = 76/80 (95%) Query: 31 TPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEPGLQEK 90 +P GITNPPID+LL++VSSKYALVIYAAKRARQIND+Y QLGEG+LEYVGPLVEPG +EK Sbjct: 13 SPEGITNPPIDDLLEQVSSKYALVIYAAKRARQINDYYAQLGEGLLEYVGPLVEPGPREK 72 Query: 91 PLSIAMREIHADLLEHTEGE 110 PLSIA+REIHA LLEHTEGE Sbjct: 73 PLSIALREIHAGLLEHTEGE 92 >sp|A4FBI2|RPOZ_SACEN Tax_Id=405948 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Saccharopolyspora erythraea] Length = 97 Score = 137 bits (346), Expect = 3e-31 Identities = 66/81 (81%), Positives = 76/81 (93%) Query: 30 DTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEPGLQE 89 + P GITNPPID+LL++VSSKYALVIY+AKRARQIND+Y QLGEG+LEYVGPLVEPG +E Sbjct: 17 NAPEGITNPPIDDLLEQVSSKYALVIYSAKRARQINDYYAQLGEGLLEYVGPLVEPGPRE 76 Query: 90 KPLSIAMREIHADLLEHTEGE 110 KPLSIA+REIHA +LEHTEGE Sbjct: 77 KPLSIALREIHAGVLEHTEGE 97 >tr|C7MSK0|C7MSK0_SACVD Tax_Id=471857 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Saccharomonospora viridis] Length = 91 Score = 136 bits (343), Expect = 7e-31 Identities = 67/77 (87%), Positives = 73/77 (94%) Query: 34 GITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEPGLQEKPLS 93 GITNPPIDELL++VSSKYALVIYAAKRARQIND+Y QLGEG+LEYVGPLVEPG +EK LS Sbjct: 15 GITNPPIDELLEKVSSKYALVIYAAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKSLS 74 Query: 94 IAMREIHADLLEHTEGE 110 IA+REIHA LLEHTEGE Sbjct: 75 IALREIHAGLLEHTEGE 91 >sp|B1VDN5|RPOZ_CORU7 Tax_Id=504474 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Corynebacterium urealyticum] Length = 93 Score = 130 bits (327), Expect = 5e-29 Identities = 61/87 (70%), Positives = 75/87 (86%) Query: 23 SGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPL 82 + + V+D P+GITNPPIDELL +VSSKYAL I+AAKRARQIND++ + EG+LE+VGPL Sbjct: 7 NSNETVFDPPVGITNPPIDELLTKVSSKYALAIFAAKRARQINDYFQSIDEGVLEFVGPL 66 Query: 83 VEPGLQEKPLSIAMREIHADLLEHTEG 109 V P + EKPLSIA+REI+ADLLEHTEG Sbjct: 67 VTPEMHEKPLSIALREINADLLEHTEG 93 >sp|Q4JVH5|RPOZ_CORJK Tax_Id=306537 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Corynebacterium jeikeium] Length = 93 Score = 128 bits (322), Expect = 2e-28 Identities = 60/87 (68%), Positives = 74/87 (85%) Query: 23 SGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPL 82 + + V+D P+GITNPPIDELL +VSSKYALVI+AAKRARQIND++ + EG+ E+VGPL Sbjct: 7 NANESVFDPPVGITNPPIDELLTKVSSKYALVIFAAKRARQINDYFQTVDEGVFEFVGPL 66 Query: 83 VEPGLQEKPLSIAMREIHADLLEHTEG 109 V P + EKPLSIA+REI+ DLLEHTEG Sbjct: 67 VTPDVHEKPLSIALREINRDLLEHTEG 93 >tr|C8RTC4|C8RTC4_CORJE Tax_Id=525262 SubName: Full=DNA-directed RNA polymerase subunit omega; EC=2.7.7.6;[Corynebacterium jeikeium ATCC 43734] Length = 96 Score = 128 bits (322), Expect = 2e-28 Identities = 60/87 (68%), Positives = 74/87 (85%) Query: 23 SGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPL 82 + + V+D P+GITNPPIDELL +VSSKYALVI+AAKRARQIND++ + EG+ E+VGPL Sbjct: 10 NANESVFDPPVGITNPPIDELLTKVSSKYALVIFAAKRARQINDYFQTVDEGVFEFVGPL 69 Query: 83 VEPGLQEKPLSIAMREIHADLLEHTEG 109 V P + EKPLSIA+REI+ DLLEHTEG Sbjct: 70 VTPDVHEKPLSIALREINRDLLEHTEG 96 >sp|P60333|RPOZ_CORDI Tax_Id=1717 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Corynebacterium diphtheriae] Length = 92 Score = 125 bits (314), Expect = 1e-27 Identities = 62/88 (70%), Positives = 68/88 (77%) Query: 22 SSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGP 81 + GVYD P GIT PPIDELL VSSKYALVI+AAKRARQIN +Y Q EG+ E+VGP Sbjct: 5 AENNDGVYDAPTGITAPPIDELLKHVSSKYALVIFAAKRARQINSYYQQADEGVFEFVGP 64 Query: 82 LVEPGLQEKPLSIAMREIHADLLEHTEG 109 LV P QEKPLSIAMREI A LL+H EG Sbjct: 65 LVTPEAQEKPLSIAMREIEAGLLDHEEG 92 >tr|C8XII5|C8XII5_NAKMY Tax_Id=479431 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Nakamurella multipartita] Length = 95 Score = 122 bits (306), Expect = 1e-26 Identities = 62/77 (80%), Positives = 67/77 (87%) Query: 34 GITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEPGLQEKPLS 93 GIT PPIDELL R SSKY L IYAAKRARQIND+Y QLGEG+LEYVGPLVEP +EKPLS Sbjct: 19 GITYPPIDELLTRTSSKYGLSIYAAKRARQINDYYAQLGEGLLEYVGPLVEPLPKEKPLS 78 Query: 94 IAMREIHADLLEHTEGE 110 IA+REI+A LL HTEGE Sbjct: 79 IALREINAGLLTHTEGE 95 >tr|C0WL27|C0WL27_9CORY Tax_Id=525260 (rpoZ)SubName: Full=DNA-directed RNA polymerase subunit omega; EC=2.7.7.6;[Corynebacterium accolens ATCC 49725] Length = 100 Score = 122 bits (305), Expect = 2e-26 Identities = 59/89 (66%), Positives = 73/89 (82%) Query: 22 SSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGP 81 S+ + V+D P+GIT+PPIDELLD+VSSKYALVI+AAKRARQIN +Y + EG+ E+VGP Sbjct: 12 SAKSEPVFDDPIGITDPPIDELLDKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFVGP 71 Query: 82 LVEPGLQEKPLSIAMREIHADLLEHTEGE 110 LV P EKPLSIA+REI A LL+H EG+ Sbjct: 72 LVNPEPGEKPLSIALREIDAGLLDHEEGK 100 >tr|C0UA72|C0UA72_9ACTO Tax_Id=526225 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Geodermatophilus obscurus DSM 43160] Length = 87 Score = 122 bits (305), Expect = 2e-26 Identities = 61/84 (72%), Positives = 69/84 (82%) Query: 27 GVYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEPG 86 GV P GITNPPIDELL+R SSKY LVI+AAKRARQIN +Y+QL EG+LEYVGPLV+ Sbjct: 3 GVAPAPEGITNPPIDELLERTSSKYGLVIFAAKRARQINAYYSQLSEGLLEYVGPLVDTA 62 Query: 87 LQEKPLSIAMREIHADLLEHTEGE 110 QEKPLSIA+REI+ LL HT GE Sbjct: 63 PQEKPLSIALREINEGLLTHTAGE 86 >tr|C6RA23|C6RA23_9CORY Tax_Id=553206 (rpoZ)SubName: Full=DNA-directed RNA polymerase, omega subunit; EC=2.7.7.6;[Corynebacterium tuberculostearicum SK141] Length = 100 Score = 120 bits (301), Expect = 5e-26 Identities = 58/83 (69%), Positives = 70/83 (84%) Query: 28 VYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEPGL 87 V+D P+GIT+PPIDELLD+VSSKYALVI+AAKRARQIN +Y + EG+ E+VGPLV P Sbjct: 18 VFDDPIGITDPPIDELLDKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFVGPLVTPEP 77 Query: 88 QEKPLSIAMREIHADLLEHTEGE 110 EKPLSIA+REI A LL+H EG+ Sbjct: 78 GEKPLSIALREIDAGLLDHEEGK 100 >tr|C2BPF6|C2BPF6_9CORY Tax_Id=525264 (rpoZ)SubName: Full=DNA-directed RNA polymerase subunit omega; EC=2.7.7.6;[Corynebacterium pseudogenitalium ATCC 33035] Length = 100 Score = 120 bits (301), Expect = 5e-26 Identities = 58/83 (69%), Positives = 70/83 (84%) Query: 28 VYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEPGL 87 V+D P+GIT+PPIDELLD+VSSKYALVI+AAKRARQIN +Y + EG+ E+VGPLV P Sbjct: 18 VFDDPIGITDPPIDELLDKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFVGPLVTPEP 77 Query: 88 QEKPLSIAMREIHADLLEHTEGE 110 EKPLSIA+REI A LL+H EG+ Sbjct: 78 GEKPLSIALREIDAGLLDHEEGK 100 >tr|C5VC77|C5VC77_9CORY Tax_Id=553207 (rpoZ)SubName: Full=DNA-directed RNA polymerase, omega subunit; EC=2.7.7.6;[Corynebacterium matruchotii ATCC 14266] Length = 92 Score = 120 bits (300), Expect = 6e-26 Identities = 57/88 (64%), Positives = 69/88 (78%) Query: 22 SSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGP 81 S Q VYD P+GIT+PPIDELLD VSSKYALVI+AAKRARQIN +Y Q EG+ E+VGP Sbjct: 5 SESNQRVYDKPIGITDPPIDELLDHVSSKYALVIFAAKRARQINSYYRQQDEGVFEFVGP 64 Query: 82 LVEPGLQEKPLSIAMREIHADLLEHTEG 109 LV+P ++KPLS A+ EI +L+H EG Sbjct: 65 LVDPPTEQKPLSTALLEIQEGMLDHEEG 92 >tr|C0E315|C0E315_9CORY Tax_Id=566549 SubName: Full=Putative uncharacterized protein;[Corynebacterium matruchotii ATCC 33806] Length = 92 Score = 120 bits (300), Expect = 6e-26 Identities = 57/88 (64%), Positives = 69/88 (78%) Query: 22 SSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGP 81 S Q VYD P+GIT+PPIDELLD VSSKYALVI+AAKRARQIN +Y Q EG+ E+VGP Sbjct: 5 SESNQRVYDKPIGITDPPIDELLDHVSSKYALVIFAAKRARQINSYYRQQDEGVFEFVGP 64 Query: 82 LVEPGLQEKPLSIAMREIHADLLEHTEG 109 LV+P ++KPLS A+ EI +L+H EG Sbjct: 65 LVDPPTEQKPLSTALLEIQEGMLDHEEG 92 >tr|C2CMP9|C2CMP9_CORST Tax_Id=525268 (rpoZ)SubName: Full=DNA-directed RNA polymerase subunit omega; EC=2.7.7.6;[Corynebacterium striatum ATCC 6940] Length = 100 Score = 119 bits (298), Expect = 1e-25 Identities = 58/83 (69%), Positives = 68/83 (81%) Query: 28 VYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEPGL 87 V+D P GIT PPIDELLD+VSSKYALVI+AAKRARQIN +Y + EG+ E+VGPLV P Sbjct: 18 VFDPPTGITAPPIDELLDKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFVGPLVTPEA 77 Query: 88 QEKPLSIAMREIHADLLEHTEGE 110 EKPLSIA+REI A LL+H EG+ Sbjct: 78 GEKPLSIALREIEAGLLDHEEGK 100 >sp|Q8NQ43|RPOZ_CORGL Tax_Id=1718 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Corynebacterium glutamicum] Length = 97 Score = 119 bits (297), Expect = 1e-25 Identities = 57/84 (67%), Positives = 70/84 (83%) Query: 26 QGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEP 85 + V+D P+GIT PPIDELLD+V+SKYALVI+AAKRARQIN Y+Q EG+ E++GPLV P Sbjct: 14 KAVFDPPVGITAPPIDELLDKVTSKYALVIFAAKRARQINSFYHQADEGVFEFIGPLVTP 73 Query: 86 GLQEKPLSIAMREIHADLLEHTEG 109 EKPLSIA+REI+A LL+H EG Sbjct: 74 QPGEKPLSIALREINAGLLDHEEG 97 >tr|A4QEI0|A4QEI0_CORGB Tax_Id=340322 SubName: Full=Putative uncharacterized protein;[Corynebacterium glutamicum] Length = 95 Score = 119 bits (297), Expect = 1e-25 Identities = 57/84 (67%), Positives = 70/84 (83%) Query: 26 QGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEP 85 + V+D P+GIT PPIDELLD+V+SKYALVI+AAKRARQIN Y+Q EG+ E++GPLV P Sbjct: 12 KAVFDPPVGITAPPIDELLDKVTSKYALVIFAAKRARQINSFYHQADEGVFEFIGPLVTP 71 Query: 86 GLQEKPLSIAMREIHADLLEHTEG 109 EKPLSIA+REI+A LL+H EG Sbjct: 72 QPGEKPLSIALREINAGLLDHEEG 95 >sp|Q8FT46|RPOZ_COREF Tax_Id=152794 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Corynebacterium efficiens] Length = 97 Score = 118 bits (296), Expect = 2e-25 Identities = 56/84 (66%), Positives = 69/84 (82%) Query: 26 QGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEP 85 + V+D P+GIT PPIDELLD+V+SKYALVI+AAKRARQIN +Y Q EG+ E++GPLV P Sbjct: 14 KAVFDPPMGITAPPIDELLDKVTSKYALVIFAAKRARQINSYYQQADEGVFEFIGPLVTP 73 Query: 86 GLQEKPLSIAMREIHADLLEHTEG 109 EKPLSIA+REI+ LL+H EG Sbjct: 74 QPGEKPLSIALREINVGLLDHEEG 97 >tr|C8NU99|C8NU99_9CORY Tax_Id=585529 SubName: Full=DNA-directed RNA polymerase subunit omega; EC=2.7.7.6;[Corynebacterium genitalium ATCC 33030] Length = 96 Score = 118 bits (296), Expect = 2e-25 Identities = 58/83 (69%), Positives = 67/83 (80%) Query: 28 VYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEPGL 87 VYD P GIT PPIDELL +VSSKYALVI+AAKRARQIN +Y + EG+ E++GPLV P Sbjct: 14 VYDAPEGITAPPIDELLTKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFIGPLVTPQQ 73 Query: 88 QEKPLSIAMREIHADLLEHTEGE 110 EKPLSIA+REI A LLEH EG+ Sbjct: 74 GEKPLSIALREIEAGLLEHEEGQ 96 >tr|C0XSU8|C0XSU8_9CORY Tax_Id=525263 (rpoZ)SubName: Full=DNA-directed RNA polymerase subunit omega; EC=2.7.7.6;[Corynebacterium lipophiloflavum DSM 44291] Length = 109 Score = 118 bits (296), Expect = 2e-25 Identities = 58/82 (70%), Positives = 66/82 (80%) Query: 28 VYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEPGL 87 VYDTP GIT PPIDELL +VSSKYALVI+AAKRARQIN +Y + EG+ E++GPLV P Sbjct: 27 VYDTPEGITAPPIDELLGKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFIGPLVTPQA 86 Query: 88 QEKPLSIAMREIHADLLEHTEG 109 EKPLSIA+REI LLEH EG Sbjct: 87 GEKPLSIALREIQTGLLEHEEG 108 Database: Amellifera_nr Posted date: Jan 15, 2010 5:10 AM Number of letters in database: 3,808,957,724 Number of sequences in database: 11,153,314 Lambda K H 0.313 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11153314 Number of Hits to DB: 849,421,096 Number of extensions: 31431199 Number of successful extensions: 54150 Number of sequences better than 10.0: 644 Number of HSP's gapped: 54556 Number of HSP's successfully gapped: 644 Length of query: 110 Length of database: 3,808,957,724 Length adjustment: 78 Effective length of query: 32 Effective length of database: 2,938,999,232 Effective search space: 94047975424 Effective search space used: 94047975424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 75 (33.5 bits)