BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ML1014c (319 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,153,314 sequences; 3,808,957,724 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|Q59531|Q59531_MYCLE Tax_Id=1769 RecName: Full=RNA polymerase ... 587 e-166 tr|B8ZQV3|B8ZQV3_MYCLB Tax_Id=561304 RecName: Full=RNA polymeras... 587 e-166 tr|Q73W34|Q73W34_MYCPA Tax_Id=1770 (sigB)RecName: Full=RNA polym... 564 e-159 tr|A0QIP2|A0QIP2_MYCA1 Tax_Id=243243 RecName: Full=RNA polymeras... 564 e-159 tr|Q7TY20|Q7TY20_MYCBO Tax_Id=1765 (sigB)RecName: Full=RNA polym... 562 e-158 tr|Q59563|Q59563_MYCTU Tax_Id=1773 (mysB)RecName: Full=RNA polym... 562 e-158 tr|C6DLJ7|C6DLJ7_MYCTK Tax_Id=478434 RecName: Full=RNA polymeras... 562 e-158 tr|C1AFG9|C1AFG9_MYCBT Tax_Id=561275 (sigB)RecName: Full=RNA pol... 562 e-158 tr|A5U662|A5U662_MYCTA Tax_Id=419947 (sigB)RecName: Full=RNA pol... 562 e-158 tr|A1KM48|A1KM48_MYCBP Tax_Id=410289 (sigB)RecName: Full=RNA pol... 562 e-158 tr|A5WQW2|A5WQW2_MYCTF Tax_Id=336982 RecName: Full=RNA polymeras... 562 e-158 tr|A4KJZ0|A4KJZ0_MYCTU Tax_Id=395095 RecName: Full=RNA polymeras... 562 e-158 tr|B2HLY9|B2HLY9_MYCMM Tax_Id=216594 (sigB)RecName: Full=RNA pol... 560 e-158 tr|P77906|P77906_MYCTU Tax_Id=1773 (mytB)RecName: Full=RNA polym... 560 e-158 tr|A0PT65|A0PT65_MYCUA Tax_Id=362242 (sigB)RecName: Full=RNA pol... 557 e-157 tr|A1T7W4|A1T7W4_MYCVP Tax_Id=350058 RecName: Full=RNA polymeras... 556 e-156 tr|A0QVZ5|A0QVZ5_MYCS2 Tax_Id=246196 RecName: Full=RNA polymeras... 555 e-156 tr|Q1B9Z9|Q1B9Z9_MYCSS Tax_Id=164756 RecName: Full=RNA polymeras... 555 e-156 tr|A3PYH5|A3PYH5_MYCSJ Tax_Id=164757 RecName: Full=RNA polymeras... 555 e-156 tr|A1UF13|A1UF13_MYCSK Tax_Id=189918 RecName: Full=RNA polymeras... 555 e-156 tr|A4TCQ2|A4TCQ2_MYCGI Tax_Id=350054 RecName: Full=RNA polymeras... 551 e-155 tr|Q59553|Q59553_MYCSM Tax_Id=1772 (mysB)RecName: Full=RNA polym... 546 e-154 tr|Q5YT68|Q5YT68_NOCFA Tax_Id=37329 (sigB)RecName: Full=RNA poly... 520 e-146 tr|B1MCY5|B1MCY5_MYCA9 Tax_Id=561007 RecName: Full=RNA polymeras... 520 e-146 tr|C2APA0|C2APA0_TSUPA Tax_Id=521096 RecName: Full=RNA polymeras... 509 e-142 tr|Q0S1K1|Q0S1K1_RHOSR Tax_Id=101510 (sigB)RecName: Full=RNA pol... 503 e-141 tr|C1B3C8|C1B3C8_RHOOB Tax_Id=632772 (sigB)RecName: Full=RNA pol... 502 e-140 tr|C6L2K1|C6L2K1_RHOOP Tax_Id=37919 (sigB)RecName: Full=RNA poly... 502 e-140 tr|D0LBS2|D0LBS2_9ACTO Tax_Id=526226 SubName: Full=RNA polymeras... 500 e-140 tr|C0ZYS7|C0ZYS7_RHOE4 Tax_Id=234621 (sigB)RecName: Full=RNA pol... 498 e-139 tr|C3JLK3|C3JLK3_RHOER Tax_Id=596309 RecName: Full=RNA polymeras... 498 e-139 tr|Q8VM94|Q8VM94_RHOFA Tax_Id=1828 (rofB)RecName: Full=RNA polym... 494 e-138 tr|C7MZ75|C7MZ75_SACVD Tax_Id=471857 RecName: Full=RNA polymeras... 470 e-130 tr|C6WAH7|C6WAH7_ACTMD Tax_Id=446462 RecName: Full=RNA polymeras... 468 e-130 tr|A4FAM7|A4FAM7_SACEN Tax_Id=405948 (sigB)RecName: Full=RNA pol... 468 e-130 tr|C4LJ13|C4LJ13_CORK4 Tax_Id=645127 (sigB)RecName: Full=RNA pol... 461 e-128 tr|Q4JV99|Q4JV99_CORJK Tax_Id=306537 (sigB)RecName: Full=RNA pol... 450 e-125 tr|C8RTK2|C8RTK2_CORJE Tax_Id=525262 (sigB)SubName: Full=RNA pol... 450 e-125 tr|C8XG81|C8XG81_NAKMY Tax_Id=479431 SubName: Full=RNA polymeras... 449 e-124 tr|B1VDF6|B1VDF6_CORU7 Tax_Id=504474 RecName: Full=RNA polymeras... 449 e-124 tr|C2CP37|C2CP37_CORST Tax_Id=525268 (sigB)RecName: Full=RNA pol... 446 e-123 tr|C3PGV0|C3PGV0_CORA7 Tax_Id=548476 (sigB)RecName: Full=RNA pol... 444 e-123 sp|P33118|RPSB_CORDI Tax_Id=1717 (sigB)RecName: Full=RNA polymer... 442 e-122 tr|C6RAB0|C6RAB0_9CORY Tax_Id=553206 RecName: Full=RNA polymeras... 442 e-122 tr|C2BP49|C2BP49_9CORY Tax_Id=525264 RecName: Full=RNA polymeras... 442 e-122 tr|C0WKT8|C0WKT8_9CORY Tax_Id=525260 (sigB)RecName: Full=RNA pol... 439 e-121 tr|A4QES7|A4QES7_CORGB Tax_Id=340322 RecName: Full=RNA polymeras... 439 e-121 tr|Q9ANT6|Q9ANT6_9CORY Tax_Id=92706 (sigB)RecName: Full=RNA poly... 439 e-121 tr|Q79VF3|Q79VF3_CORGL Tax_Id=1718 (sigB)RecName: Full=RNA polym... 438 e-121 tr|C8NPB9|C8NPB9_COREF Tax_Id=196164 (sigB)SubName: Full=RNA pol... 435 e-120 >tr|Q59531|Q59531_MYCLE Tax_Id=1769 RecName: Full=RNA polymerase sigma factor;[Mycobacterium leprae] Length = 319 Score = 587 bits (1512), Expect = e-166 Identities = 304/319 (95%), Positives = 304/319 (95%) Query: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT Sbjct: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 RKRFGEGRK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 RKRFGEGRKRALAAVARDGAAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN Sbjct: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD Sbjct: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 Query: 301 VMCKLRNGERADRLRSYAS 319 VMCKLRNGERADRLRSYAS Sbjct: 301 VMCKLRNGERADRLRSYAS 319 >tr|B8ZQV3|B8ZQV3_MYCLB Tax_Id=561304 RecName: Full=RNA polymerase sigma factor;[Mycobacterium leprae] Length = 319 Score = 587 bits (1512), Expect = e-166 Identities = 304/319 (95%), Positives = 304/319 (95%) Query: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT Sbjct: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 RKRFGEGRK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 RKRFGEGRKRALAAVARDGAAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN Sbjct: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD Sbjct: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 Query: 301 VMCKLRNGERADRLRSYAS 319 VMCKLRNGERADRLRSYAS Sbjct: 301 VMCKLRNGERADRLRSYAS 319 >tr|Q73W34|Q73W34_MYCPA Tax_Id=1770 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium paratuberculosis] Length = 332 Score = 564 bits (1454), Expect = e-159 Identities = 293/319 (91%), Positives = 297/319 (93%) Query: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 MA A+T+R D DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYAEHLL+T Sbjct: 14 MANASTSRFDGDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLET 73 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 RKR GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 74 RKRLGENRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 133 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 134 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 193 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATDEELAAESGIPI+KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN Sbjct: 194 LGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 253 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD Sbjct: 254 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 313 Query: 301 VMCKLRNGERADRLRSYAS 319 VM KLRNGERADRLRSYAS Sbjct: 314 VMSKLRNGERADRLRSYAS 332 >tr|A0QIP2|A0QIP2_MYCA1 Tax_Id=243243 RecName: Full=RNA polymerase sigma factor;[Mycobacterium avium] Length = 319 Score = 564 bits (1454), Expect = e-159 Identities = 293/319 (91%), Positives = 297/319 (93%) Query: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 MA A+T+R D DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYAEHLL+T Sbjct: 1 MANASTSRFDGDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLET 60 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 RKR GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 RKRLGENRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATDEELAAESGIPI+KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN Sbjct: 181 LGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD Sbjct: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 Query: 301 VMCKLRNGERADRLRSYAS 319 VM KLRNGERADRLRSYAS Sbjct: 301 VMSKLRNGERADRLRSYAS 319 >tr|Q7TY20|Q7TY20_MYCBO Tax_Id=1765 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 323 Score = 562 bits (1448), Expect = e-158 Identities = 292/316 (92%), Positives = 297/316 (93%) Query: 4 ATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKR 63 ATT+RVDSDLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYAEHLL+TRKR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 FGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 243 EATDEELAAESGIPI+KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMC 303 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVM Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|Q59563|Q59563_MYCTU Tax_Id=1773 (mysB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 323 Score = 562 bits (1448), Expect = e-158 Identities = 292/316 (92%), Positives = 297/316 (93%) Query: 4 ATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKR 63 ATT+RVDSDLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYAEHLL+TRKR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 FGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 243 EATDEELAAESGIPI+KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMC 303 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVM Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|C6DLJ7|C6DLJ7_MYCTK Tax_Id=478434 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 345 Score = 562 bits (1448), Expect = e-158 Identities = 292/316 (92%), Positives = 297/316 (93%) Query: 4 ATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKR 63 ATT+RVDSDLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYAEHLL+TRKR Sbjct: 30 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 89 Query: 64 FGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 90 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 149 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 150 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 209 Query: 184 EATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 243 EATDEELAAESGIPI+KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI Sbjct: 210 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 269 Query: 244 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMC 303 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVM Sbjct: 270 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 329 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 330 KLRHGERADRLRSYAS 345 >tr|C1AFG9|C1AFG9_MYCBT Tax_Id=561275 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 323 Score = 562 bits (1448), Expect = e-158 Identities = 292/316 (92%), Positives = 297/316 (93%) Query: 4 ATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKR 63 ATT+RVDSDLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYAEHLL+TRKR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 FGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 243 EATDEELAAESGIPI+KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMC 303 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVM Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|A5U662|A5U662_MYCTA Tax_Id=419947 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 323 Score = 562 bits (1448), Expect = e-158 Identities = 292/316 (92%), Positives = 297/316 (93%) Query: 4 ATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKR 63 ATT+RVDSDLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYAEHLL+TRKR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 FGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 243 EATDEELAAESGIPI+KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMC 303 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVM Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|A1KM48|A1KM48_MYCBP Tax_Id=410289 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 323 Score = 562 bits (1448), Expect = e-158 Identities = 292/316 (92%), Positives = 297/316 (93%) Query: 4 ATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKR 63 ATT+RVDSDLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYAEHLL+TRKR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 FGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 243 EATDEELAAESGIPI+KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMC 303 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVM Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|A5WQW2|A5WQW2_MYCTF Tax_Id=336982 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 345 Score = 562 bits (1448), Expect = e-158 Identities = 292/316 (92%), Positives = 297/316 (93%) Query: 4 ATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKR 63 ATT+RVDSDLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYAEHLL+TRKR Sbjct: 30 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 89 Query: 64 FGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 90 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 149 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 150 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 209 Query: 184 EATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 243 EATDEELAAESGIPI+KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI Sbjct: 210 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 269 Query: 244 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMC 303 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVM Sbjct: 270 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 329 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 330 KLRHGERADRLRSYAS 345 >tr|A4KJZ0|A4KJZ0_MYCTU Tax_Id=395095 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis str. Haarlem] Length = 323 Score = 562 bits (1448), Expect = e-158 Identities = 292/316 (92%), Positives = 297/316 (93%) Query: 4 ATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKR 63 ATT+RVDSDLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYAEHLL+TRKR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 FGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 243 EATDEELAAESGIPI+KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMC 303 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVM Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|B2HLY9|B2HLY9_MYCMM Tax_Id=216594 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium marinum] Length = 333 Score = 560 bits (1443), Expect = e-158 Identities = 290/319 (90%), Positives = 294/319 (92%) Query: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 +A RVDSDLDAQSPAADLVRVYLNGIGKTALLNA EVELAKRIEAGLYAEHLL T Sbjct: 15 IARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLAT 74 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 RKR G+ RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 75 RKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 134 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 135 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 194 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATDEELAAESGIP+EKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN Sbjct: 195 LGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 254 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD Sbjct: 255 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 314 Query: 301 VMCKLRNGERADRLRSYAS 319 VMCKLR+GERADRLRSYAS Sbjct: 315 VMCKLRHGERADRLRSYAS 333 >tr|P77906|P77906_MYCTU Tax_Id=1773 (mytB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 345 Score = 560 bits (1443), Expect = e-158 Identities = 291/316 (92%), Positives = 296/316 (93%) Query: 4 ATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKR 63 ATT+RVDSDLDAQSPAADLVRVYLNGIGKTALLN A EVELAKRIEAGLYAEHLL+TRKR Sbjct: 30 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNPAGEVELAKRIEAGLYAEHLLETRKR 89 Query: 64 FGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 90 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 149 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 150 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 209 Query: 184 EATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 243 EATDEELAAESGIPI+KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI Sbjct: 210 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 269 Query: 244 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMC 303 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVM Sbjct: 270 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 329 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 330 KLRHGERADRLRSYAS 345 >tr|A0PT65|A0PT65_MYCUA Tax_Id=362242 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium ulcerans] Length = 323 Score = 557 bits (1436), Expect = e-157 Identities = 288/319 (90%), Positives = 294/319 (92%) Query: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 +A RVDSDLDAQSPAADLVRVYLNGIGKTALLNA EVELAKRIEAGLYAEHLL T Sbjct: 5 IARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLAT 64 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 RKR G+ RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 65 RKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQN Sbjct: 125 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREIHQN 184 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATDEELAAESGIP+EKINDLLEHSRDPVSLDMPVGS+EEAPLGDFIEDAEAMSAEN Sbjct: 185 LGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAEN 244 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD Sbjct: 245 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 304 Query: 301 VMCKLRNGERADRLRSYAS 319 VMCKLR+GERADRLRSYAS Sbjct: 305 VMCKLRHGERADRLRSYAS 323 >tr|A1T7W4|A1T7W4_MYCVP Tax_Id=350058 RecName: Full=RNA polymerase sigma factor;[Mycobacterium vanbaalenii] Length = 329 Score = 556 bits (1432), Expect = e-156 Identities = 287/319 (89%), Positives = 294/319 (92%) Query: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 MA ATT+R+D DLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYA+HLL T Sbjct: 11 MANATTSRIDQDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 70 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 RKR GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 71 RKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 130 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 131 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 190 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATDEELAAESGIP+EKI DLLEHSRDPVSLDMPVGS+EEAPLGDFIEDAEAMSAEN Sbjct: 191 LGREATDEELAAESGIPVEKITDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAEN 250 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 251 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 310 Query: 301 VMCKLRNGERADRLRSYAS 319 VM KLRNGERADRLRSYAS Sbjct: 311 VMAKLRNGERADRLRSYAS 329 >tr|A0QVZ5|A0QVZ5_MYCS2 Tax_Id=246196 RecName: Full=RNA polymerase sigma factor;[Mycobacterium smegmatis] Length = 319 Score = 555 bits (1431), Expect = e-156 Identities = 286/319 (89%), Positives = 296/319 (92%) Query: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 MA ATT+RVD+DLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYA+HLL T Sbjct: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 +KR GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATDEELA ESGIP+EKINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAEN Sbjct: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 Query: 301 VMCKLRNGERADRLRSYAS 319 VM KLRNGERADRLRSYAS Sbjct: 301 VMAKLRNGERADRLRSYAS 319 >tr|Q1B9Z9|Q1B9Z9_MYCSS Tax_Id=164756 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 319 Score = 555 bits (1429), Expect = e-156 Identities = 288/319 (90%), Positives = 294/319 (92%) Query: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 MA ATT+RVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYA+HLL T Sbjct: 1 MANATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLNT 60 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 +KR GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 KKRLGESRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATDEELA ESGIP EKI DLLEHSRDPVSLDMPVGS+EEAPLGDFIEDAEAMSAEN Sbjct: 181 LGREATDEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAEN 240 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 241 AVISELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 Query: 301 VMCKLRNGERADRLRSYAS 319 VM KLRNGERADRLRSYAS Sbjct: 301 VMAKLRNGERADRLRSYAS 319 >tr|A3PYH5|A3PYH5_MYCSJ Tax_Id=164757 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 319 Score = 555 bits (1429), Expect = e-156 Identities = 288/319 (90%), Positives = 294/319 (92%) Query: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 MA ATT+RVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYA+HLL T Sbjct: 1 MANATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLNT 60 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 +KR GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 KKRLGESRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATDEELA ESGIP EKI DLLEHSRDPVSLDMPVGS+EEAPLGDFIEDAEAMSAEN Sbjct: 181 LGREATDEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAEN 240 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 241 AVISELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 Query: 301 VMCKLRNGERADRLRSYAS 319 VM KLRNGERADRLRSYAS Sbjct: 301 VMAKLRNGERADRLRSYAS 319 >tr|A1UF13|A1UF13_MYCSK Tax_Id=189918 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 319 Score = 555 bits (1429), Expect = e-156 Identities = 288/319 (90%), Positives = 294/319 (92%) Query: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 MA ATT+RVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYA+HLL T Sbjct: 1 MANATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLNT 60 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 +KR GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 KKRLGESRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATDEELA ESGIP EKI DLLEHSRDPVSLDMPVGS+EEAPLGDFIEDAEAMSAEN Sbjct: 181 LGREATDEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAEN 240 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 241 AVISELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 Query: 301 VMCKLRNGERADRLRSYAS 319 VM KLRNGERADRLRSYAS Sbjct: 301 VMAKLRNGERADRLRSYAS 319 >tr|A4TCQ2|A4TCQ2_MYCGI Tax_Id=350054 RecName: Full=RNA polymerase sigma factor;[Mycobacterium gilvum] Length = 329 Score = 551 bits (1419), Expect = e-155 Identities = 285/319 (89%), Positives = 292/319 (91%) Query: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 MA ATT+R D DLDAQSPAADLVRVYLNGIGKTALL AADEVELAKRIEAGLYA+HLL T Sbjct: 11 MANATTSRFDQDLDAQSPAADLVRVYLNGIGKTALLTAADEVELAKRIEAGLYAQHLLAT 70 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 RKR GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 71 RKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 130 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 131 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 190 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATDEELA ESGIP+EKINDLLEHSRDPVSLDMPVGS+EEAPLGDFIEDAEAMSAEN Sbjct: 191 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAEN 250 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 251 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 310 Query: 301 VMCKLRNGERADRLRSYAS 319 VM KLRNG+RADRLRSYAS Sbjct: 311 VMAKLRNGDRADRLRSYAS 329 >tr|Q59553|Q59553_MYCSM Tax_Id=1772 (mysB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium smegmatis] Length = 319 Score = 546 bits (1408), Expect = e-154 Identities = 282/319 (88%), Positives = 293/319 (91%) Query: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 MA ATT+RVD+DLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYA+HLL T Sbjct: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 +KR GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATDEELA ESGIP+EKINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAEN Sbjct: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 Query: 301 VMCKLRNGERADRLRSYAS 319 VM KLRNGERAD+ YAS Sbjct: 301 VMAKLRNGERADQPAVYAS 319 >tr|Q5YT68|Q5YT68_NOCFA Tax_Id=37329 (sigB)RecName: Full=RNA polymerase sigma factor;[Nocardia farcinica] Length = 322 Score = 520 bits (1339), Expect = e-146 Identities = 271/322 (84%), Positives = 285/322 (88%), Gaps = 3/322 (0%) Query: 1 MAEATTNRV---DSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHL 57 M T RV DSDLDAQSPAADLVRVYLNGIG+TALL AADEVELAKRIEAGLYA+HL Sbjct: 1 MTSPATTRVRASDSDLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYAQHL 60 Query: 58 LQTRKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNL 117 L+T KR +K HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNL Sbjct: 61 LETSKRLSAAKKKDLAMIVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNL 120 Query: 118 GLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREM 177 GLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+ Sbjct: 121 GLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREL 180 Query: 178 HQNLGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMS 237 HQ LGREATDEELAAESGIP+EKI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA S Sbjct: 181 HQQLGREATDEELAAESGIPVEKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATS 240 Query: 238 AENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQI 297 AE+AVIA LLH D+RSVLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQI Sbjct: 241 AESAVIAGLLHHDVRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQI 300 Query: 298 ERDVMCKLRNGERADRLRSYAS 319 ER+VM KLR GERADRLR+YAS Sbjct: 301 EREVMAKLRKGERADRLRAYAS 322 >tr|B1MCY5|B1MCY5_MYCA9 Tax_Id=561007 RecName: Full=RNA polymerase sigma factor;[Mycobacterium abscessus] Length = 323 Score = 520 bits (1339), Expect = e-146 Identities = 270/323 (83%), Positives = 285/323 (88%), Gaps = 4/323 (1%) Query: 1 MAEATTNRV----DSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEH 56 MA ATT DLDAQSPAADLVRVYLNGIGKTALL A DEVELAKRIEAGLYA+H Sbjct: 1 MANATTRPARTTESEDLDAQSPAADLVRVYLNGIGKTALLTAEDEVELAKRIEAGLYAQH 60 Query: 57 LLQTRKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 116 LL T+KR GE RK HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN Sbjct: 61 LLDTKKRLGEARKKDLAVIVREGNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120 Query: 117 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 176 LGLIRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE Sbjct: 121 LGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180 Query: 177 MHQNLGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 236 +HQ LGREA+DEELA ESGIP+EKI DLL+HSRDPVSLDMPVG++EEAPLGDFIED EAM Sbjct: 181 LHQRLGREASDEELAEESGIPVEKIGDLLDHSRDPVSLDMPVGTDEEAPLGDFIEDTEAM 240 Query: 237 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 296 SAENAVIAELLH+D+RSVLATLDERE QVIRLR+GLDDGQ RTLDQIGKLFGLSRERVRQ Sbjct: 241 SAENAVIAELLHSDVRSVLATLDEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQ 300 Query: 297 IERDVMCKLRNGERADRLRSYAS 319 IER+VM KLR+G+RA+RLRSYAS Sbjct: 301 IEREVMAKLRHGDRAERLRSYAS 323 >tr|C2APA0|C2APA0_TSUPA Tax_Id=521096 RecName: Full=RNA polymerase sigma factor;[Tsukamurella paurometabola DSM 20162] Length = 330 Score = 509 bits (1311), Expect = e-142 Identities = 260/310 (83%), Positives = 279/310 (90%) Query: 10 DSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKRFGEGRK 69 ++DLDAQSPAADLVRVYLNGIG+TALL A DEVELAKRIEAGLYA+HLL T+KR +K Sbjct: 21 EADLDAQSPAADLVRVYLNGIGRTALLTAEDEVELAKRIEAGLYAQHLLDTKKRLSASKK 80 Query: 70 XXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 129 HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY Sbjct: 81 RDLAFIVRDGQAARQHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYA 140 Query: 130 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEE 189 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARI+RE+HQ LGREATD E Sbjct: 141 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDAE 200 Query: 190 LAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHT 249 LAAESGIP EKI DL++HSRDPVSLDMPVGS+EEAPLGDFIEDAEA SAE+AVI+ L+H+ Sbjct: 201 LAAESGIPAEKIADLMDHSRDPVSLDMPVGSDEEAPLGDFIEDAEAASAESAVISTLMHS 260 Query: 250 DIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGE 309 D+RSVLATLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+VM KLRNGE Sbjct: 261 DVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRNGE 320 Query: 310 RADRLRSYAS 319 RADRLR+YAS Sbjct: 321 RADRLRAYAS 330 >tr|Q0S1K1|Q0S1K1_RHOSR Tax_Id=101510 (sigB)RecName: Full=RNA polymerase sigma factor;[Rhodococcus sp.] Length = 323 Score = 503 bits (1296), Expect = e-141 Identities = 261/319 (81%), Positives = 281/319 (88%), Gaps = 3/319 (0%) Query: 4 ATTNRVD---SDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 +TT R+ +DLDAQSPAADLVRVYLNGIG+TALL AADEVEL+KRIEAGLYA H+L+T Sbjct: 5 STTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIEAGLYAAHILET 64 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 KR +K HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 65 GKRLSPAKKRDLATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ Sbjct: 125 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQ 184 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATD+ELA ESGIP KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA SAEN Sbjct: 185 LGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAEN 244 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVIA LLH+D+RSVLATLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 245 AVIAGLLHSDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIERE 304 Query: 301 VMCKLRNGERADRLRSYAS 319 VM KLR G+RA+RLRSYAS Sbjct: 305 VMGKLRQGDRAERLRSYAS 323 >tr|C1B3C8|C1B3C8_RHOOB Tax_Id=632772 (sigB)RecName: Full=RNA polymerase sigma factor;[Rhodococcus opacus] Length = 323 Score = 502 bits (1293), Expect = e-140 Identities = 260/319 (81%), Positives = 281/319 (88%), Gaps = 3/319 (0%) Query: 4 ATTNRVD---SDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 +TT R+ +DLDAQSPAADLVRVYLNGIG+TALL AADEVEL+KRIEAGLYA H+L+T Sbjct: 5 STTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIEAGLYAAHILET 64 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 KR +K HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 65 GKRLSPAKKRDLATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ Sbjct: 125 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQ 184 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATD+ELA ESGIP KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA SAEN Sbjct: 185 LGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAEN 244 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVIA LLH+D+R+VLATLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 245 AVIAGLLHSDVRTVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIERE 304 Query: 301 VMCKLRNGERADRLRSYAS 319 VM KLR G+RA+RLRSYAS Sbjct: 305 VMGKLRQGDRAERLRSYAS 323 >tr|C6L2K1|C6L2K1_RHOOP Tax_Id=37919 (sigB)RecName: Full=RNA polymerase sigma factor;[Rhodococcus opacus] Length = 323 Score = 502 bits (1293), Expect = e-140 Identities = 260/319 (81%), Positives = 281/319 (88%), Gaps = 3/319 (0%) Query: 4 ATTNRVD---SDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 +TT R+ +DLDAQSPAADLVRVYLNGIG+TALL AADEVEL+KRIEAGLYA H+L+T Sbjct: 5 STTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIEAGLYAAHILET 64 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 KR +K HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 65 GKRLSPAKKRDLATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ Sbjct: 125 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQ 184 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATD+ELA ESGIP KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA SAEN Sbjct: 185 LGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAEN 244 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVIA LLH+D+R+VLATLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 245 AVIAGLLHSDVRTVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIERE 304 Query: 301 VMCKLRNGERADRLRSYAS 319 VM KLR G+RA+RLRSYAS Sbjct: 305 VMGKLRQGDRAERLRSYAS 323 >tr|D0LBS2|D0LBS2_9ACTO Tax_Id=526226 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Gordonia bronchialis DSM 43247] Length = 337 Score = 500 bits (1288), Expect = e-140 Identities = 258/320 (80%), Positives = 281/320 (87%), Gaps = 3/320 (0%) Query: 3 EATTNR---VDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQ 59 +AT R + DLDAQSPAADLVRVYLNGIG+TALLNA EVELAK+IEAGLYA+H+L Sbjct: 18 DATRTRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIEAGLYAKHVLA 77 Query: 60 TRKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL 119 T+KR +K HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL Sbjct: 78 TKKRLSAAKKRDLAIVVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL 137 Query: 120 IRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ 179 IRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ Sbjct: 138 IRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQ 197 Query: 180 NLGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAE 239 LGREATDEELA ESGIP EKI DLL+HSRDPVSLDMPVGS+EEAPLGDFIEDAEA SAE Sbjct: 198 QLGREATDEELANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAE 257 Query: 240 NAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER 299 +AVIA L+HTD+R+VLATLDERE QVIR+R+GLDDGQPRTLDQIG++FGLSRERVRQIER Sbjct: 258 SAVIAGLMHTDVRAVLATLDEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIER 317 Query: 300 DVMCKLRNGERADRLRSYAS 319 +VM KLR G+RA+RLR+YAS Sbjct: 318 EVMGKLRQGDRAERLRAYAS 337 >tr|C0ZYS7|C0ZYS7_RHOE4 Tax_Id=234621 (sigB)RecName: Full=RNA polymerase sigma factor;[Rhodococcus erythropolis] Length = 323 Score = 498 bits (1283), Expect = e-139 Identities = 260/319 (81%), Positives = 279/319 (87%), Gaps = 3/319 (0%) Query: 4 ATTNRVD---SDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 +TT R+ +DLDAQSPAADLVRVYLNGIG+TALL AADEVELAKRIEAGLYA H+L T Sbjct: 5 STTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYASHVLAT 64 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 KR +K HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 65 GKRLTVAKKRDLATIVREGQSARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ Sbjct: 125 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQ 184 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATD+ELA ESGIP KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA SAEN Sbjct: 185 LGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAEN 244 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVIA LLH+D+RSVL TLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 245 AVIAGLLHSDVRSVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIERE 304 Query: 301 VMCKLRNGERADRLRSYAS 319 VM KLR G+RA++LRSYAS Sbjct: 305 VMGKLRVGDRAEKLRSYAS 323 >tr|C3JLK3|C3JLK3_RHOER Tax_Id=596309 RecName: Full=RNA polymerase sigma factor;[Rhodococcus erythropolis SK121] Length = 323 Score = 498 bits (1283), Expect = e-139 Identities = 260/319 (81%), Positives = 279/319 (87%), Gaps = 3/319 (0%) Query: 4 ATTNRVD---SDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 +TT R+ +DLDAQSPAADLVRVYLNGIG+TALL AADEVELAKRIEAGLYA H+L T Sbjct: 5 STTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYASHVLAT 64 Query: 61 RKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 KR +K HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 65 GKRLTVAKKRDLATIVREGQSARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ Sbjct: 125 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQ 184 Query: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 LGREATD+ELA ESGIP KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA SAEN Sbjct: 185 LGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAEN 244 Query: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 AVIA LLH+D+RSVL TLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 245 AVIAGLLHSDVRSVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIERE 304 Query: 301 VMCKLRNGERADRLRSYAS 319 VM KLR G+RA++LRSYAS Sbjct: 305 VMGKLRVGDRAEKLRSYAS 323 >tr|Q8VM94|Q8VM94_RHOFA Tax_Id=1828 (rofB)RecName: Full=RNA polymerase sigma factor;[Rhodococcus fascians] Length = 323 Score = 494 bits (1271), Expect = e-138 Identities = 253/310 (81%), Positives = 275/310 (88%) Query: 10 DSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKRFGEGRK 69 D+DLDAQSPAADLVRVYLNGIG+TALL A +EV+LAKRIEAGLYA+ +L+ KR +K Sbjct: 14 DADLDAQSPAADLVRVYLNGIGRTALLTAEEEVDLAKRIEAGLYAKQVLENTKRLSAVKK 73 Query: 70 XXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 129 HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY Sbjct: 74 RNLAIIVRDGSAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYA 133 Query: 130 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEE 189 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ LGREATDEE Sbjct: 134 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDEE 193 Query: 190 LAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHT 249 L++ESGI +EKI DLL+HSRDPVSLDMPVGS+EEAPLGDFIED+EA SAENAVIA LLH+ Sbjct: 194 LSSESGIAVEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDSEATSAENAVIAGLLHS 253 Query: 250 DIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGE 309 D+R VL TLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+VM KLR G+ Sbjct: 254 DVRVVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMVKLRQGD 313 Query: 310 RADRLRSYAS 319 RA++LRSYAS Sbjct: 314 RAEKLRSYAS 323 >tr|C7MZ75|C7MZ75_SACVD Tax_Id=471857 RecName: Full=RNA polymerase sigma factor;[Saccharomonospora viridis] Length = 342 Score = 470 bits (1209), Expect = e-130 Identities = 239/310 (77%), Positives = 269/310 (86%) Query: 10 DSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKRFGEGRK 69 ++DLDAQ PAADLVRVYLNGIGKTALL A +EV+LAKRIEAG++A+H+L T E RK Sbjct: 33 EADLDAQGPAADLVRVYLNGIGKTALLTAEEEVDLAKRIEAGVFAQHVLDTSDDLSEERK 92 Query: 70 XXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 129 HLL+ANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA+EKFDYT Sbjct: 93 AELSEVVRDGEEAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYT 152 Query: 130 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEE 189 KGFKFSTYATWWIRQAITRGMADQ RTIRLPVHLVEQVNKLARIKR++HQ LGREAT EE Sbjct: 153 KGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRLGREATHEE 212 Query: 190 LAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHT 249 LAAESGI +K+ DLL+H+RDPVSLDMPVG++E+APLGDFIED+EA +AEN+VI+ LL Sbjct: 213 LAAESGIAEKKVADLLDHARDPVSLDMPVGADEDAPLGDFIEDSEAANAENSVISTLLQD 272 Query: 250 DIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGE 309 D+R VLATLD+RE VIRLR+GLDDGQPRTLDQIGK F LSRERVRQIER+VM KLR+GE Sbjct: 273 DLRRVLATLDDREEHVIRLRYGLDDGQPRTLDQIGKHFSLSRERVRQIEREVMAKLRHGE 332 Query: 310 RADRLRSYAS 319 RAD+LR+YAS Sbjct: 333 RADKLRAYAS 342 >tr|C6WAH7|C6WAH7_ACTMD Tax_Id=446462 RecName: Full=RNA polymerase sigma factor;[Actinosynnema mirum] Length = 330 Score = 468 bits (1205), Expect = e-130 Identities = 240/311 (77%), Positives = 267/311 (85%) Query: 9 VDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKRFGEGR 68 VD DLDAQ PAADLVRVYLNGIGKTALL AA EVELAKRIEAG++A H+L+T GR Sbjct: 20 VDLDLDAQGPAADLVRVYLNGIGKTALLTAAQEVELAKRIEAGVFAHHVLETTTALNAGR 79 Query: 69 KXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128 HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA+EKFDY Sbjct: 80 ADELRALVRDGLRAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDY 139 Query: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188 TKGFKFSTYATWWIRQAITRGMADQ RTIRLPVHLVEQVNKLARIKR++HQ LGREAT+E Sbjct: 140 TKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATNE 199 Query: 189 ELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 248 ELAAESG+ K++DLL+H+RDPVSLDMPVG+EE+APLGDFIED++A AE+AVI+ LL Sbjct: 200 ELAAESGLSPTKVSDLLDHARDPVSLDMPVGAEEDAPLGDFIEDSDATDAESAVISGLLQ 259 Query: 249 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNG 308 D+R VLATL++RE VIRLR+GL+DGQPRTLDQIGK FGLSRERVRQIER+VM KLR G Sbjct: 260 DDLRRVLATLEQREQAVIRLRYGLEDGQPRTLDQIGKQFGLSRERVRQIEREVMSKLRQG 319 Query: 309 ERADRLRSYAS 319 ERA +LR+YAS Sbjct: 320 ERAAKLRAYAS 330 >tr|A4FAM7|A4FAM7_SACEN Tax_Id=405948 (sigB)RecName: Full=RNA polymerase sigma factor;[Saccharopolyspora erythraea] Length = 324 Score = 468 bits (1204), Expect = e-130 Identities = 233/311 (74%), Positives = 269/311 (86%) Query: 9 VDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKRFGEGR 68 +++DLD Q P+ADLVRVYLNGIG+TALL A +EV+LAKRIEAG++A H+L+T + R Sbjct: 14 IEADLDTQGPSADLVRVYLNGIGRTALLTAQEEVDLAKRIEAGVFANHVLETSGKLSPER 73 Query: 69 KXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128 + HL+EANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA+EKFDY Sbjct: 74 RSDLKAVVRDGVLAKNHLMEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDY 133 Query: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNK+ARIKR++HQ LGREATDE Sbjct: 134 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKIARIKRDLHQKLGREATDE 193 Query: 189 ELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 248 ELA E+G+ +EK+ DLL+HSRDPVSLDMPVG+EE+APLGDFIEDAE+ AENAVI+ L Sbjct: 194 ELANEAGLTVEKVADLLDHSRDPVSLDMPVGAEEDAPLGDFIEDAESADAENAVISGFLQ 253 Query: 249 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNG 308 D+R VL+TL+ERE VIR+R+GLDDGQPRTLDQIGK FGLSRERVRQIER+VM KLR G Sbjct: 254 DDLRRVLSTLEEREQAVIRMRYGLDDGQPRTLDQIGKAFGLSRERVRQIEREVMSKLRQG 313 Query: 309 ERADRLRSYAS 319 +RAD+LR+YAS Sbjct: 314 DRADKLRAYAS 324 >tr|C4LJ13|C4LJ13_CORK4 Tax_Id=645127 (sigB)RecName: Full=RNA polymerase sigma factor;[Corynebacterium kroppenstedtii] Length = 326 Score = 461 bits (1186), Expect = e-128 Identities = 240/320 (75%), Positives = 273/320 (85%), Gaps = 5/320 (1%) Query: 4 ATTNRVDSDL-----DAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLL 58 +TT V+ D + ++P+ADLVRVYLNGIG+TALLNA DEVEL++RIEAGLYA+HLL Sbjct: 7 STTTEVNGDPGRRANNNENPSADLVRVYLNGIGRTALLNAEDEVELSQRIEAGLYAQHLL 66 Query: 59 QTRKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLG 118 ++ ++F +K HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLG Sbjct: 67 ESDEQFTPSKKRDLKAVAKDGRAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLG 126 Query: 119 LIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMH 178 LIRA+EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+ Sbjct: 127 LIRAVEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMY 186 Query: 179 QNLGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSA 238 Q+LGREAT+EELA ESGI KI+ LL+ SRDPVSLDMPVG++EEAPLGDFIED+EA A Sbjct: 187 QHLGREATNEELAEESGIDESKIDLLLKQSRDPVSLDMPVGTDEEAPLGDFIEDSEATDA 246 Query: 239 ENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIE 298 E AV+A L H+DIR+VLATL++RE VIRLRFGLDDG PRTLDQIG+ FGLSRERVRQIE Sbjct: 247 EEAVVASLRHSDIRTVLATLEKREQDVIRLRFGLDDGVPRTLDQIGREFGLSRERVRQIE 306 Query: 299 RDVMCKLRNGERADRLRSYA 318 R+VM KLR GERAD+LRSYA Sbjct: 307 REVMAKLRKGERADKLRSYA 326 >tr|Q4JV99|Q4JV99_CORJK Tax_Id=306537 (sigB)RecName: Full=RNA polymerase sigma factor;[Corynebacterium jeikeium] Length = 343 Score = 450 bits (1158), Expect = e-125 Identities = 229/303 (75%), Positives = 257/303 (84%) Query: 16 QSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKRFGEGRKXXXXXX 75 ++P+ADLVRVYLNGIGKTALL A DEVEL+KRIE GLY+E+LL ++ +K Sbjct: 40 ENPSADLVRVYLNGIGKTALLTAEDEVELSKRIEVGLYSEYLLSNAEKLTRAKKRDLKVL 99 Query: 76 XXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 135 HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS Sbjct: 100 AREGKAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 159 Query: 136 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESG 195 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q LGREAT+EEL+ ESG Sbjct: 160 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEELSEESG 219 Query: 196 IPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 255 I KI LL+ SRDPVSLDMPVGS+EEAPLGDFIED++A AE AV+A L H+D+R+VL Sbjct: 220 IEESKIEMLLKQSRDPVSLDMPVGSDEEAPLGDFIEDSDATDAETAVVASLRHSDVRAVL 279 Query: 256 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGERADRLR 315 TL+ERE VI+LR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR G+RAD+LR Sbjct: 280 GTLEEREQDVIKLRYGLDDGMPRTLDQIGRRFGLSRERVRQIEREVMAKLREGDRADKLR 339 Query: 316 SYA 318 YA Sbjct: 340 EYA 342 >tr|C8RTK2|C8RTK2_CORJE Tax_Id=525262 (sigB)SubName: Full=RNA polymerase principal sigma factor SigB;[Corynebacterium jeikeium ATCC 43734] Length = 343 Score = 450 bits (1158), Expect = e-125 Identities = 229/303 (75%), Positives = 257/303 (84%) Query: 16 QSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKRFGEGRKXXXXXX 75 ++P+ADLVRVYLNGIGKTALL A DEVEL+KRIE GLY+E+LL ++ +K Sbjct: 40 ENPSADLVRVYLNGIGKTALLTAEDEVELSKRIEVGLYSEYLLSNAEKLTRAKKRDLKVL 99 Query: 76 XXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 135 HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS Sbjct: 100 AREGKAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 159 Query: 136 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESG 195 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q LGREAT+EEL+ ESG Sbjct: 160 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEELSEESG 219 Query: 196 IPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 255 I KI LL+ SRDPVSLDMPVGS+EEAPLGDFIED++A AE AV+A L H+D+R+VL Sbjct: 220 IEESKIEMLLKQSRDPVSLDMPVGSDEEAPLGDFIEDSDATDAETAVVASLRHSDVRAVL 279 Query: 256 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGERADRLR 315 TL+ERE VI+LR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR G+RAD+LR Sbjct: 280 GTLEEREQDVIKLRYGLDDGMPRTLDQIGRRFGLSRERVRQIEREVMAKLREGDRADKLR 339 Query: 316 SYA 318 YA Sbjct: 340 EYA 342 >tr|C8XG81|C8XG81_NAKMY Tax_Id=479431 SubName: Full=RNA polymerase, sigma 70 subunit, RpoD subfamily; Flags: Precursor;[Nakamurella multipartita] Length = 334 Score = 449 bits (1155), Expect = e-124 Identities = 233/318 (73%), Positives = 263/318 (82%), Gaps = 2/318 (0%) Query: 4 ATTNRV--DSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTR 61 ATT V D DLDAQ P+ADLVRVYLNGIGKTALL A EVELAKRIEAG++A H+L++ Sbjct: 17 ATTRTVSHDEDLDAQGPSADLVRVYLNGIGKTALLTAEQEVELAKRIEAGVFAAHVLESD 76 Query: 62 KRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIR 121 R+ HLL ANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIR Sbjct: 77 VEMSPQRRKDLRMVVRDGGRARNHLLVANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIR 136 Query: 122 AMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNL 181 A+EKFDYTKGFKFSTYATWWIRQAI+RGMADQ RTIRLPVHLVEQVNKL+R+KRE+HQ L Sbjct: 137 AVEKFDYTKGFKFSTYATWWIRQAISRGMADQGRTIRLPVHLVEQVNKLSRLKRELHQQL 196 Query: 182 GREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENA 241 GR+AT ELA ESGIP EKI DLL+H+RDPVSLDMPVGS+EEAPLGDFIED+E+ SAE A Sbjct: 197 GRDATLAELAHESGIPEEKIADLLDHARDPVSLDMPVGSDEEAPLGDFIEDSESTSAEAA 256 Query: 242 VIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDV 301 V+A +H DI VL TLD+RE V+RLR+GLDDG+PRTLD+IG+ FG+SRERVRQIERD Sbjct: 257 VVAGFMHDDINRVLRTLDDREQTVVRLRYGLDDGRPRTLDEIGRHFGISRERVRQIERDS 316 Query: 302 MCKLRNGERADRLRSYAS 319 M KLR G+R++ LRSYAS Sbjct: 317 MAKLRVGDRSEVLRSYAS 334 >tr|B1VDF6|B1VDF6_CORU7 Tax_Id=504474 RecName: Full=RNA polymerase sigma factor;[Corynebacterium urealyticum] Length = 340 Score = 449 bits (1154), Expect = e-124 Identities = 234/316 (74%), Positives = 264/316 (83%) Query: 3 EATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRK 62 E T+R + ++P+ADLVRVYLNGIGKTALL A DEVEL++RIEAGLYAE LL++ + Sbjct: 24 EQNTDRRRRRGNNENPSADLVRVYLNGIGKTALLTAEDEVELSQRIEAGLYAEQLLKSGE 83 Query: 63 RFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA 122 +K HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA Sbjct: 84 PLTRAKKRDVKILAREGKAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA 143 Query: 123 MEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLG 182 MEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q+LG Sbjct: 144 MEKFDYKKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLG 203 Query: 183 REATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAV 242 REAT EELA ESGIP ++I L++ SRDPVSLDMPVG++EEAPLGDFIED+EA AE AV Sbjct: 204 REATYEELAEESGIPEDRIEMLMKQSRDPVSLDMPVGTDEEAPLGDFIEDSEAEDAEAAV 263 Query: 243 IAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVM 302 +A L H+DIRSVLATL++RE VI LR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM Sbjct: 264 VASLRHSDIRSVLATLEQREQDVITLRYGLDDGLPRTLDQIGRQFGLSRERVRQIEREVM 323 Query: 303 CKLRNGERADRLRSYA 318 KLR G+RAD+LR YA Sbjct: 324 AKLREGQRADKLREYA 339 >tr|C2CP37|C2CP37_CORST Tax_Id=525268 (sigB)RecName: Full=RNA polymerase sigma factor;[Corynebacterium striatum ATCC 6940] Length = 337 Score = 446 bits (1148), Expect = e-123 Identities = 231/302 (76%), Positives = 253/302 (83%) Query: 17 SPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKRFGEGRKXXXXXXX 76 +P+ADLVRVYLNGIGKTALL+A DEVELA+RIE GLYAE+ L ++ K Sbjct: 35 NPSADLVRVYLNGIGKTALLSAEDEVELAQRIEVGLYAEYKLANAEKITRAEKRDLKILV 94 Query: 77 XXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST 136 HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY KGFKFST Sbjct: 95 REGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFST 154 Query: 137 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGI 196 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q+LGREAT+EELA ESGI Sbjct: 155 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATNEELAEESGI 214 Query: 197 PIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLA 256 KI LL SRDPVSLDMPVG++EEAPLGDFIEDAEA AE AV+A + H+DIR V+ Sbjct: 215 EESKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDAEATDAETAVVAAMRHSDIRGVIE 274 Query: 257 TLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGERADRLRS 316 TL+ERE VIRLR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR+G RADRLR Sbjct: 275 TLEEREQDVIRLRYGLDDGVPRTLDQIGRKFGLSRERVRQIEREVMAKLRDGNRADRLRE 334 Query: 317 YA 318 YA Sbjct: 335 YA 336 >tr|C3PGV0|C3PGV0_CORA7 Tax_Id=548476 (sigB)RecName: Full=RNA polymerase sigma factor;[Corynebacterium aurimucosum] Length = 331 Score = 444 bits (1143), Expect = e-123 Identities = 230/302 (76%), Positives = 252/302 (83%) Query: 17 SPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKRFGEGRKXXXXXXX 76 +P+ADLVRVYLNGIGKTALL+A DEVELA+ IE GLYAE+ L ++ K Sbjct: 29 NPSADLVRVYLNGIGKTALLSAEDEVELAQTIEVGLYAEYKLANAEKLTRAEKRDLKILA 88 Query: 77 XXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST 136 HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY KGFKFST Sbjct: 89 REGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFST 148 Query: 137 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGI 196 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q+LGREAT+EELA ESGI Sbjct: 149 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATNEELAEESGI 208 Query: 197 PIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLA 256 KI LL SRDPVSLDMPVG++EEAPLGDFIEDAEA AE AV+A + H+DIRSV+ Sbjct: 209 EESKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDAEATDAETAVVASMRHSDIRSVIG 268 Query: 257 TLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGERADRLRS 316 +L+ERE VIRLR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR G RADRLR Sbjct: 269 SLEEREQDVIRLRYGLDDGVPRTLDQIGRKFGLSRERVRQIEREVMAKLREGNRADRLRE 328 Query: 317 YA 318 YA Sbjct: 329 YA 330 >sp|P33118|RPSB_CORDI Tax_Id=1717 (sigB)RecName: Full=RNA polymerase sigma factor sigB;[Corynebacterium diphtheriae] Length = 329 Score = 442 bits (1138), Expect = e-122 Identities = 235/321 (73%), Positives = 265/321 (82%), Gaps = 5/321 (1%) Query: 3 EATTNRVDS----DLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLL 58 EA+T VD + +P+ADLVRVYLNGIGKTALLNA DEVELA+ IE GLYAE+LL Sbjct: 8 EASTETVDRGSRRNQTNDNPSADLVRVYLNGIGKTALLNAEDEVELAQTIEVGLYAEYLL 67 Query: 59 Q-TRKRFGEGRKXXXXXXXXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNL 117 + +++ K HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNL Sbjct: 68 ENSQEPLTRAMKRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNL 127 Query: 118 GLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREM 177 GLIRAMEKFDY+KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM Sbjct: 128 GLIRAMEKFDYSKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREM 187 Query: 178 HQNLGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMS 237 +Q LGREAT+EELA ESGI KI LL SRDPVSLDMPVG++EEAPLGDFIED+EA Sbjct: 188 YQQLGREATNEELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATD 247 Query: 238 AENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQI 297 AE+AV+A L H+DIR+VL TL++RE VIRLR+GLDDG PRTLDQIG+ FGLSRERVRQI Sbjct: 248 AESAVVASLRHSDIRTVLDTLEQREQDVIRLRYGLDDGVPRTLDQIGRQFGLSRERVRQI 307 Query: 298 ERDVMCKLRNGERADRLRSYA 318 ER+VM KLR+G RA++LR+YA Sbjct: 308 EREVMSKLRDGARAEKLRAYA 328 >tr|C6RAB0|C6RAB0_9CORY Tax_Id=553206 RecName: Full=RNA polymerase sigma factor;[Corynebacterium tuberculostearicum SK141] Length = 365 Score = 442 bits (1136), Expect = e-122 Identities = 228/302 (75%), Positives = 252/302 (83%) Query: 17 SPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKRFGEGRKXXXXXXX 76 +P+ADLVRVYLNGIGKTALL+A DEVELA+ IE GLYAE+ L ++ K Sbjct: 63 NPSADLVRVYLNGIGKTALLSAEDEVELAQAIEVGLYAEYKLNNAEKLTRAEKRDLKILA 122 Query: 77 XXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST 136 HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY KGFKFST Sbjct: 123 REGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFST 182 Query: 137 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGI 196 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q+LGREAT+EEL+ ESGI Sbjct: 183 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATNEELSEESGI 242 Query: 197 PIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLA 256 KI LL SRDPVSLDMPVG++EEAPLGDFIEDAEA AE AV+A + H+DIR V+ Sbjct: 243 DENKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDAEATDAETAVVASMRHSDIRGVID 302 Query: 257 TLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGERADRLRS 316 TL++RE VIRLR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR+G RADRLR Sbjct: 303 TLEKREQDVIRLRYGLDDGVPRTLDQIGRRFGLSRERVRQIEREVMAKLRDGNRADRLRE 362 Query: 317 YA 318 YA Sbjct: 363 YA 364 >tr|C2BP49|C2BP49_9CORY Tax_Id=525264 RecName: Full=RNA polymerase sigma factor;[Corynebacterium pseudogenitalium ATCC 33035] Length = 337 Score = 442 bits (1136), Expect = e-122 Identities = 228/302 (75%), Positives = 252/302 (83%) Query: 17 SPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKRFGEGRKXXXXXXX 76 +P+ADLVRVYLNGIGKTALL+A DEVELA+ IE GLYAE+ L ++ K Sbjct: 35 NPSADLVRVYLNGIGKTALLSAEDEVELAQAIEVGLYAEYKLNNAEKLTRAEKRDLKILA 94 Query: 77 XXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST 136 HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY KGFKFST Sbjct: 95 REGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFST 154 Query: 137 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGI 196 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q+LGREAT+EEL+ ESGI Sbjct: 155 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATNEELSEESGI 214 Query: 197 PIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLA 256 KI LL SRDPVSLDMPVG++EEAPLGDFIEDAEA AE AV+A + H+DIR V+ Sbjct: 215 DENKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDAEATDAETAVVASMRHSDIRGVID 274 Query: 257 TLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGERADRLRS 316 TL++RE VIRLR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR+G RADRLR Sbjct: 275 TLEKREQDVIRLRYGLDDGVPRTLDQIGRRFGLSRERVRQIEREVMAKLRDGNRADRLRE 334 Query: 317 YA 318 YA Sbjct: 335 YA 336 >tr|C0WKT8|C0WKT8_9CORY Tax_Id=525260 (sigB)RecName: Full=RNA polymerase sigma factor;[Corynebacterium accolens ATCC 49725] Length = 337 Score = 439 bits (1130), Expect = e-121 Identities = 227/302 (75%), Positives = 251/302 (83%) Query: 17 SPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKRFGEGRKXXXXXXX 76 +P+ADLVRVYLNGIGKT LL+A DEVELA+ IE GLYAE+ L ++ K Sbjct: 35 NPSADLVRVYLNGIGKTDLLSAEDEVELAQTIEVGLYAEYKLNNAEKLTRAEKRDLKILA 94 Query: 77 XXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST 136 HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY KGFKFST Sbjct: 95 REGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFST 154 Query: 137 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGI 196 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q+LGREAT+EEL+ ESGI Sbjct: 155 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATNEELSEESGI 214 Query: 197 PIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLA 256 KI LL SRDPVSLDMPVG++EEAPLGDFIEDAEA AE AV+A + H+DIR V+ Sbjct: 215 DENKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDAEATDAETAVVASMRHSDIRGVID 274 Query: 257 TLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGERADRLRS 316 TL++RE VIRLR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR+G RADRLR Sbjct: 275 TLEKREQDVIRLRYGLDDGVPRTLDQIGRRFGLSRERVRQIEREVMAKLRDGNRADRLRE 334 Query: 317 YA 318 YA Sbjct: 335 YA 336 >tr|A4QES7|A4QES7_CORGB Tax_Id=340322 RecName: Full=RNA polymerase sigma factor;[Corynebacterium glutamicum] Length = 331 Score = 439 bits (1129), Expect = e-121 Identities = 230/303 (75%), Positives = 253/303 (83%), Gaps = 1/303 (0%) Query: 17 SPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKR-FGEGRKXXXXXX 75 +P+ DLVRVYLNGIGKTALL A DEVELA+ IE GLYAEHLL+ + K Sbjct: 28 NPSQDLVRVYLNGIGKTALLTAEDEVELAQTIEVGLYAEHLLKNSEEPLTRAMKRDLKVL 87 Query: 76 XXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 135 HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY+KGFKFS Sbjct: 88 AKDGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGFKFS 147 Query: 136 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESG 195 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q+LGREAT+EELA ESG Sbjct: 148 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNEELAEESG 207 Query: 196 IPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 255 I KI LL SRDPVSLDMPVG++EEAPLGDFIED+EA AE+AV+A + H+DIR+VL Sbjct: 208 IEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASMRHSDIRAVL 267 Query: 256 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGERADRLR 315 TL+ RE VIRLR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR+GERA RLR Sbjct: 268 NTLEPREQDVIRLRYGLDDGVPRTLDQIGRRFGLSRERVRQIEREVMSKLRDGERASRLR 327 Query: 316 SYA 318 YA Sbjct: 328 EYA 330 >tr|Q9ANT6|Q9ANT6_9CORY Tax_Id=92706 (sigB)RecName: Full=RNA polymerase sigma factor;[[Brevibacterium] flavum] Length = 331 Score = 439 bits (1129), Expect = e-121 Identities = 230/303 (75%), Positives = 253/303 (83%), Gaps = 1/303 (0%) Query: 17 SPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKR-FGEGRKXXXXXX 75 +P+ DLVRVYLNGIGKTALL A DEVELA+ IE GLYAEHLL+ + K Sbjct: 28 NPSQDLVRVYLNGIGKTALLTAEDEVELAQTIEVGLYAEHLLKNSEEPLTRAMKRDLKVL 87 Query: 76 XXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 135 HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY+KGFKFS Sbjct: 88 AKDGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGFKFS 147 Query: 136 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESG 195 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q+LGREAT+EELA ESG Sbjct: 148 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNEELAEESG 207 Query: 196 IPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 255 I KI LL SRDPVSLDMPVG++EEAPLGDFIED+EA AE+AV+A + H+DIR+VL Sbjct: 208 IEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASMRHSDIRAVL 267 Query: 256 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGERADRLR 315 TL+ RE VIRLR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR+GERA RLR Sbjct: 268 NTLEPREQDVIRLRYGLDDGVPRTLDQIGRRFGLSRERVRQIEREVMSKLRDGERASRLR 327 Query: 316 SYA 318 YA Sbjct: 328 EYA 330 >tr|Q79VF3|Q79VF3_CORGL Tax_Id=1718 (sigB)RecName: Full=RNA polymerase sigma factor;[Corynebacterium glutamicum] Length = 331 Score = 438 bits (1126), Expect = e-121 Identities = 229/303 (75%), Positives = 253/303 (83%), Gaps = 1/303 (0%) Query: 17 SPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKR-FGEGRKXXXXXX 75 +P+ DLVRVYLNGIGKTALL A DEVELA+ IE GLYAEHLL+ + K Sbjct: 28 NPSQDLVRVYLNGIGKTALLTAEDEVELAQTIEVGLYAEHLLKNSEEPLTRAMKRDLKVL 87 Query: 76 XXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 135 HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY+KGFKFS Sbjct: 88 AKDGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGFKFS 147 Query: 136 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESG 195 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKRE++Q+LGREAT+EELA ESG Sbjct: 148 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKRELYQHLGREATNEELAEESG 207 Query: 196 IPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 255 I KI LL SRDPVSLDMPVG++EEAPLGDFIED+EA AE+AV+A + H+DIR+VL Sbjct: 208 IEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASMRHSDIRAVL 267 Query: 256 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGERADRLR 315 TL+ RE VIRLR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR+GERA RLR Sbjct: 268 NTLEPREQDVIRLRYGLDDGVPRTLDQIGRRFGLSRERVRQIEREVMSKLRDGERASRLR 327 Query: 316 SYA 318 YA Sbjct: 328 EYA 330 >tr|C8NPB9|C8NPB9_COREF Tax_Id=196164 (sigB)SubName: Full=RNA polymerase principal sigma factor SigB;[Corynebacterium efficiens YS-314] Length = 333 Score = 435 bits (1118), Expect = e-120 Identities = 228/303 (75%), Positives = 254/303 (83%), Gaps = 1/303 (0%) Query: 17 SPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQ-TRKRFGEGRKXXXXXX 75 +P+ DLVRVYLNGIGKTALL A DEVELA+ IE GLYAE+ L+ + + K Sbjct: 30 NPSQDLVRVYLNGIGKTALLTAEDEVELAQTIEVGLYAEYKLKHSDEPLTRAMKRDLKVL 89 Query: 76 XXXXXXXXXHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 135 HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS Sbjct: 90 AKEGKKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 149 Query: 136 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESG 195 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q+LGREAT+EELA ESG Sbjct: 150 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNEELAEESG 209 Query: 196 IPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 255 I KI LL SRDPVSLDMPVG++EEAPLGDFIED+EA AE AV+A + H+DIRSVL Sbjct: 210 IEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAETAVVASMRHSDIRSVL 269 Query: 256 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGERADRLR 315 +TL++RE VIRLR+GL+DG PRTLDQIG+ FGLSRERVRQIER+VM KLR+GERA +LR Sbjct: 270 STLEQREQDVIRLRYGLEDGVPRTLDQIGRRFGLSRERVRQIEREVMSKLRDGERAAKLR 329 Query: 316 SYA 318 YA Sbjct: 330 EYA 332 Database: Amellifera_nr Posted date: Jan 15, 2010 5:10 AM Number of letters in database: 3,808,957,724 Number of sequences in database: 11,153,314 Lambda K H 0.318 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11153314 Number of Hits to DB: 2,057,521,179 Number of extensions: 81437133 Number of successful extensions: 257245 Number of sequences better than 10.0: 6903 Number of HSP's gapped: 253116 Number of HSP's successfully gapped: 7590 Length of query: 319 Length of database: 3,808,957,724 Length adjustment: 137 Effective length of query: 182 Effective length of database: 2,280,953,706 Effective search space: 415133574492 Effective search space used: 415133574492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 80 (35.4 bits)