BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ML1022c (574 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,153,314 sequences; 3,808,957,724 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|Q59532|Q59532_MYCLE Tax_Id=1769 (rpoT)RecName: Full=RNA polym... 856 0.0 tr|B8ZQV8|B8ZQV8_MYCLB Tax_Id=561304 (rpoT)RecName: Full=RNA pol... 856 0.0 tr|Q9S5K3|Q9S5K3_MYCLE Tax_Id=1769 (rpoT)RecName: Full=RNA polym... 851 0.0 sp|P0A602|RPOD_MYCTU Tax_Id=1773 (rpoD)RecName: Full=RNA polymer... 634 e-179 sp|P0A603|RPOD_MYCBO Tax_Id=1765 (rpoD)RecName: Full=RNA polymer... 634 e-179 tr|C6DLK4|C6DLK4_MYCTK Tax_Id=478434 RecName: Full=RNA polymeras... 634 e-179 tr|C1AFG2|C1AFG2_MYCBT Tax_Id=561275 (sigA)RecName: Full=RNA pol... 634 e-179 tr|A5U655|A5U655_MYCTA Tax_Id=419947 (sigA)RecName: Full=RNA pol... 634 e-179 tr|A1KM41|A1KM41_MYCBP Tax_Id=410289 (sigA)RecName: Full=RNA pol... 634 e-179 tr|Q60158|Q60158_MYCBO Tax_Id=1765 (rpoV)RecName: Full=RNA polym... 634 e-179 tr|A5WQV6|A5WQV6_MYCTF Tax_Id=336982 RecName: Full=RNA polymeras... 634 e-179 tr|Q59502|Q59502_MYCBO Tax_Id=1765 (rpoV)RecName: Full=RNA polym... 632 e-179 tr|A2VL47|A2VL47_MYCTU Tax_Id=348776 RecName: Full=RNA polymeras... 631 e-179 tr|A0QIN4|A0QIN4_MYCA1 Tax_Id=243243 RecName: Full=RNA polymeras... 624 e-176 tr|Q73W40|Q73W40_MYCPA Tax_Id=1770 (sigA)RecName: Full=RNA polym... 620 e-175 tr|B2HLZ7|B2HLZ7_MYCMM Tax_Id=216594 (sigA)RecName: Full=RNA pol... 605 e-171 tr|A0PT58|A0PT58_MYCUA Tax_Id=362242 (sigA)RecName: Full=RNA pol... 603 e-170 tr|A1T7X4|A1T7X4_MYCVP Tax_Id=350058 RecName: Full=RNA polymeras... 600 e-169 tr|B1MCW6|B1MCW6_MYCA9 Tax_Id=561007 RecName: Full=RNA polymeras... 598 e-169 tr|Q1B9Z1|Q1B9Z1_MYCSS Tax_Id=164756 RecName: Full=RNA polymeras... 597 e-168 tr|A1UF21|A1UF21_MYCSK Tax_Id=189918 RecName: Full=RNA polymeras... 597 e-168 tr|A0QW02|A0QW02_MYCS2 Tax_Id=246196 RecName: Full=RNA polymeras... 596 e-168 tr|Q59552|Q59552_MYCSM Tax_Id=1772 (mysA)RecName: Full=RNA polym... 596 e-168 tr|A4TCR0|A4TCR0_MYCGI Tax_Id=350054 RecName: Full=RNA polymeras... 596 e-168 tr|A3PYI3|A3PYI3_MYCSJ Tax_Id=164757 RecName: Full=RNA polymeras... 596 e-168 tr|Q0S1J1|Q0S1J1_RHOSR Tax_Id=101510 (sigA)RecName: Full=RNA pol... 592 e-167 tr|C1B466|C1B466_RHOOB Tax_Id=632772 (sigA)RecName: Full=RNA pol... 592 e-167 tr|C6L2K0|C6L2K0_RHOOP Tax_Id=37919 (sigA)RecName: Full=RNA poly... 592 e-167 tr|C0ZYT9|C0ZYT9_RHOE4 Tax_Id=234621 (sigA)RecName: Full=RNA pol... 587 e-165 tr|C3JLL5|C3JLL5_RHOER Tax_Id=596309 RecName: Full=RNA polymeras... 587 e-165 tr|Q8VM92|Q8VM92_RHOFA Tax_Id=1828 (rofA)RecName: Full=RNA polym... 576 e-162 tr|Q5YT84|Q5YT84_NOCFA Tax_Id=37329 (sigA)RecName: Full=RNA poly... 573 e-161 tr|C2APF0|C2APF0_TSUPA Tax_Id=521096 RecName: Full=RNA polymeras... 565 e-159 tr|D0LBS9|D0LBS9_9ACTO Tax_Id=526226 SubName: Full=RNA polymeras... 560 e-157 tr|C6WAJ3|C6WAJ3_ACTMD Tax_Id=446462 RecName: Full=RNA polymeras... 552 e-155 tr|C7MYK8|C7MYK8_SACVD Tax_Id=471857 RecName: Full=RNA polymeras... 547 e-153 tr|A4FAP1|A4FAP1_SACEN Tax_Id=405948 (sigA)RecName: Full=RNA pol... 547 e-153 tr|C8XG60|C8XG60_NAKMY Tax_Id=479431 SubName: Full=RNA polymeras... 543 e-152 tr|C0U2T9|C0U2T9_9ACTO Tax_Id=526225 RecName: Full=RNA polymeras... 543 e-152 tr|A4X4Z1|A4X4Z1_SALTO Tax_Id=369723 RecName: Full=RNA polymeras... 540 e-151 tr|A8M805|A8M805_SALAI Tax_Id=391037 RecName: Full=RNA polymeras... 539 e-151 tr|Q4JVA6|Q4JVA6_CORJK Tax_Id=306537 (sigA)RecName: Full=RNA pol... 538 e-151 tr|C8RTJ4|C8RTJ4_CORJE Tax_Id=525262 (sigA)SubName: Full=RNA pol... 538 e-150 tr|C4LJ07|C4LJ07_CORK4 Tax_Id=645127 (sigA)RecName: Full=RNA pol... 534 e-149 tr|C4RDI4|C4RDI4_9ACTO Tax_Id=219305 RecName: Full=RNA polymeras... 531 e-149 tr|C4DE52|C4DE52_9ACTO Tax_Id=446470 RecName: Full=RNA polymeras... 530 e-148 tr|Q9AGV7|Q9AGV7_CORAM Tax_Id=1697 (rpoD)RecName: Full=RNA polym... 530 e-148 tr|Q9ANT7|Q9ANT7_9CORY Tax_Id=92706 (sigA)RecName: Full=RNA poly... 527 e-147 tr|Q8NPA3|Q8NPA3_CORGL Tax_Id=1718 RecName: Full=RNA polymerase ... 526 e-147 tr|Q6M4B0|Q6M4B0_CORGL Tax_Id=1718 (sigA)RecName: Full=RNA polym... 526 e-147 >tr|Q59532|Q59532_MYCLE Tax_Id=1769 (rpoT)RecName: Full=RNA polymerase sigma factor;[Mycobacterium leprae] Length = 574 Score = 856 bits (2212), Expect = 0.0 Identities = 457/574 (79%), Positives = 458/574 (79%) Query: 1 VEQSRRVPPLQWLSAVARPIARVLTLISTPTFDIADTFGYACPNPPEVSPTEGVYVVATK 60 +EQSRRVPPLQWLSAVARPIARVLTLISTPTFDIADTFGYACPNPPEVSPTEGVYVVATK Sbjct: 1 MEQSRRVPPLQWLSAVARPIARVLTLISTPTFDIADTFGYACPNPPEVSPTEGVYVVATK 60 Query: 61 TSPATGQPVXXXXXXXXXXXXXXXXXXXXNGXXXXXXXXXXXXXXXXXXXXPXXXXXXXX 120 TSPATGQPV NG P Sbjct: 61 TSPATGQPVKRTATKTPATPAKRSTTKAANGSAPTKRATSTASRATKSTTPPKASGASDA 120 Query: 121 XXXXRTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEXXXXXXXXXXXXXXXXXEPDLDVE 180 RTSVKSVDTKAPSAQDHTTKASAAKDTLNDPE EPDLDVE Sbjct: 121 AKKARTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEATLNTLDSDATADDLDAEPDLDVE 180 Query: 181 PSXXXXXXXXXXXXXXXXXXXXXVVTDIEPGETEDGEATAATKTDEASTDDDEEIVEPTE 240 PS VVTDIEPGETEDGEATAATKTDEASTDDDEEIVEPTE Sbjct: 181 PSEDIDIDIEAADLGLDDLEDDDVVTDIEPGETEDGEATAATKTDEASTDDDEEIVEPTE 240 Query: 241 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIE 300 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK KRIE Sbjct: 241 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 300 Query: 301 AGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 360 AGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG Sbjct: 301 AGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 360 Query: 361 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 420 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE Sbjct: 361 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 420 Query: 421 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 480 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ Sbjct: 421 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 480 Query: 481 LGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 540 LGDFI FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ Sbjct: 481 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 540 Query: 541 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 541 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 >tr|B8ZQV8|B8ZQV8_MYCLB Tax_Id=561304 (rpoT)RecName: Full=RNA polymerase sigma factor;[Mycobacterium leprae] Length = 574 Score = 856 bits (2212), Expect = 0.0 Identities = 457/574 (79%), Positives = 458/574 (79%) Query: 1 VEQSRRVPPLQWLSAVARPIARVLTLISTPTFDIADTFGYACPNPPEVSPTEGVYVVATK 60 +EQSRRVPPLQWLSAVARPIARVLTLISTPTFDIADTFGYACPNPPEVSPTEGVYVVATK Sbjct: 1 MEQSRRVPPLQWLSAVARPIARVLTLISTPTFDIADTFGYACPNPPEVSPTEGVYVVATK 60 Query: 61 TSPATGQPVXXXXXXXXXXXXXXXXXXXXNGXXXXXXXXXXXXXXXXXXXXPXXXXXXXX 120 TSPATGQPV NG P Sbjct: 61 TSPATGQPVKRTATKTPATPAKRSTTKAANGSAPTKRATSTASRATKSTTPPKASGASDA 120 Query: 121 XXXXRTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEXXXXXXXXXXXXXXXXXEPDLDVE 180 RTSVKSVDTKAPSAQDHTTKASAAKDTLNDPE EPDLDVE Sbjct: 121 AKKARTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEATLNTLDSDATADDLDAEPDLDVE 180 Query: 181 PSXXXXXXXXXXXXXXXXXXXXXVVTDIEPGETEDGEATAATKTDEASTDDDEEIVEPTE 240 PS VVTDIEPGETEDGEATAATKTDEASTDDDEEIVEPTE Sbjct: 181 PSEDIDIDIEAADLGLDDLEDDDVVTDIEPGETEDGEATAATKTDEASTDDDEEIVEPTE 240 Query: 241 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIE 300 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK KRIE Sbjct: 241 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 300 Query: 301 AGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 360 AGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG Sbjct: 301 AGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 360 Query: 361 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 420 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE Sbjct: 361 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 420 Query: 421 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 480 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ Sbjct: 421 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 480 Query: 481 LGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 540 LGDFI FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ Sbjct: 481 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 540 Query: 541 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 541 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 >tr|Q9S5K3|Q9S5K3_MYCLE Tax_Id=1769 (rpoT)RecName: Full=RNA polymerase sigma factor;[Mycobacterium leprae] Length = 576 Score = 851 bits (2199), Expect = 0.0 Identities = 457/576 (79%), Positives = 458/576 (79%), Gaps = 2/576 (0%) Query: 1 VEQSRRVPPLQWLSAVARPIARVLTLISTPTFDIADTFGYACPNPPEVSPTEGVYVVATK 60 +EQSRRVPPLQWLSAVARPIARVLTLISTPTFDIADTFGYACPNPPEVSPTEGVYVVATK Sbjct: 1 MEQSRRVPPLQWLSAVARPIARVLTLISTPTFDIADTFGYACPNPPEVSPTEGVYVVATK 60 Query: 61 TSPATGQPVXXXXXXXXXXXXXXXXXXXXNGXXXXXXXXXXXXXXXXXXXXPXXXXXXXX 120 TSPATGQPV NG P Sbjct: 61 TSPATGQPVKRTATKTPATPAKRSTTKAANGSAPTKRATSTASRATKSTTPPKASGASDA 120 Query: 121 XXXXRTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEXXXXXXXXXXXXXXXXXEPDLDVE 180 RTSVKSVDTKAPSAQDHTTKASAAKDTLNDPE EPDLDVE Sbjct: 121 AKKARTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEATLNTLDSDATADDLDAEPDLDVE 180 Query: 181 PSXXXXXXXXXXXXXXXXXXXXX--VVTDIEPGETEDGEATAATKTDEASTDDDEEIVEP 238 PS VVTDIEPGETEDGEATAATKTDEASTDDDEEIVEP Sbjct: 181 PSEDIDIDIDIEAADLGLDDLEDDDVVTDIEPGETEDGEATAATKTDEASTDDDEEIVEP 240 Query: 239 TEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKR 298 TEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK KR Sbjct: 241 TEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKR 300 Query: 299 IEAGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTG 358 IEAGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTG Sbjct: 301 IEAGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTG 360 Query: 359 RGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHM 418 RGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHM Sbjct: 361 RGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHM 420 Query: 419 VEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGD 478 VEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGD Sbjct: 421 VEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGD 480 Query: 479 SQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEI 538 SQLGDFI FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEI Sbjct: 481 SQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEI 540 Query: 539 GQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 GQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 541 GQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 576 >sp|P0A602|RPOD_MYCTU Tax_Id=1773 (rpoD)RecName: Full=RNA polymerase sigma factor rpoD; Short=Sigma-A;[Mycobacterium tuberculosis] Length = 528 Score = 634 bits (1635), Expect = e-179 Identities = 346/454 (76%), Positives = 355/454 (78%), Gaps = 7/454 (1%) Query: 125 RTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEXXXXXXXXXXXXXXXXXEPDLDVEPSXX 184 R + KS KAPSA+ H TK A KD + E EPDLDVEP Sbjct: 78 RAAAKSAAAKAPSARGHATKPRAPKDAQH--EAATDPEDALDSVEELDAEPDLDVEPGED 135 Query: 185 XXXXXXXXXXXXXXXXXXXVVTD-IEPGETEDGE---ATAATKTDEASTDDDEEIVEPTE 240 D ++ G+ ED E A AA + + DDDEEI EPTE Sbjct: 136 LDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQTA-DDDEEIAEPTE 194 Query: 241 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIE 300 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK KRIE Sbjct: 195 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 254 Query: 301 AGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 360 AGLYATQLMTELSERG KLP AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG Sbjct: 255 AGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 314 Query: 361 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 420 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE Sbjct: 315 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 374 Query: 421 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 480 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ Sbjct: 375 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 434 Query: 481 LGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 540 LGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQ Sbjct: 435 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQ 494 Query: 541 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 495 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 >sp|P0A603|RPOD_MYCBO Tax_Id=1765 (rpoD)RecName: Full=RNA polymerase sigma factor rpoD; Short=Sigma-A;[Mycobacterium bovis] Length = 528 Score = 634 bits (1635), Expect = e-179 Identities = 346/454 (76%), Positives = 355/454 (78%), Gaps = 7/454 (1%) Query: 125 RTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEXXXXXXXXXXXXXXXXXEPDLDVEPSXX 184 R + KS KAPSA+ H TK A KD + E EPDLDVEP Sbjct: 78 RAAAKSAAAKAPSARGHATKPRAPKDAQH--EAATDPEDALDSVEELDAEPDLDVEPGED 135 Query: 185 XXXXXXXXXXXXXXXXXXXVVTD-IEPGETEDGE---ATAATKTDEASTDDDEEIVEPTE 240 D ++ G+ ED E A AA + + DDDEEI EPTE Sbjct: 136 LDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQTA-DDDEEIAEPTE 194 Query: 241 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIE 300 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK KRIE Sbjct: 195 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 254 Query: 301 AGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 360 AGLYATQLMTELSERG KLP AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG Sbjct: 255 AGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 314 Query: 361 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 420 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE Sbjct: 315 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 374 Query: 421 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 480 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ Sbjct: 375 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 434 Query: 481 LGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 540 LGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQ Sbjct: 435 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQ 494 Query: 541 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 495 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 >tr|C6DLK4|C6DLK4_MYCTK Tax_Id=478434 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 528 Score = 634 bits (1635), Expect = e-179 Identities = 346/454 (76%), Positives = 355/454 (78%), Gaps = 7/454 (1%) Query: 125 RTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEXXXXXXXXXXXXXXXXXEPDLDVEPSXX 184 R + KS KAPSA+ H TK A KD + E EPDLDVEP Sbjct: 78 RAAAKSAAAKAPSARGHATKPRAPKDAQH--EAATDPEDALDSVEELDAEPDLDVEPGED 135 Query: 185 XXXXXXXXXXXXXXXXXXXVVTD-IEPGETEDGE---ATAATKTDEASTDDDEEIVEPTE 240 D ++ G+ ED E A AA + + DDDEEI EPTE Sbjct: 136 LDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQTA-DDDEEIAEPTE 194 Query: 241 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIE 300 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK KRIE Sbjct: 195 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 254 Query: 301 AGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 360 AGLYATQLMTELSERG KLP AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG Sbjct: 255 AGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 314 Query: 361 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 420 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE Sbjct: 315 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 374 Query: 421 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 480 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ Sbjct: 375 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 434 Query: 481 LGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 540 LGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQ Sbjct: 435 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQ 494 Query: 541 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 495 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 >tr|C1AFG2|C1AFG2_MYCBT Tax_Id=561275 (sigA)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 528 Score = 634 bits (1635), Expect = e-179 Identities = 346/454 (76%), Positives = 355/454 (78%), Gaps = 7/454 (1%) Query: 125 RTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEXXXXXXXXXXXXXXXXXEPDLDVEPSXX 184 R + KS KAPSA+ H TK A KD + E EPDLDVEP Sbjct: 78 RAAAKSAAAKAPSARGHATKPRAPKDAQH--EAATDPEDALDSVEELDAEPDLDVEPGED 135 Query: 185 XXXXXXXXXXXXXXXXXXXVVTD-IEPGETEDGE---ATAATKTDEASTDDDEEIVEPTE 240 D ++ G+ ED E A AA + + DDDEEI EPTE Sbjct: 136 LDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQTA-DDDEEIAEPTE 194 Query: 241 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIE 300 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK KRIE Sbjct: 195 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 254 Query: 301 AGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 360 AGLYATQLMTELSERG KLP AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG Sbjct: 255 AGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 314 Query: 361 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 420 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE Sbjct: 315 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 374 Query: 421 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 480 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ Sbjct: 375 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 434 Query: 481 LGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 540 LGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQ Sbjct: 435 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQ 494 Query: 541 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 495 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 >tr|A5U655|A5U655_MYCTA Tax_Id=419947 (sigA)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 528 Score = 634 bits (1635), Expect = e-179 Identities = 346/454 (76%), Positives = 355/454 (78%), Gaps = 7/454 (1%) Query: 125 RTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEXXXXXXXXXXXXXXXXXEPDLDVEPSXX 184 R + KS KAPSA+ H TK A KD + E EPDLDVEP Sbjct: 78 RAAAKSAAAKAPSARGHATKPRAPKDAQH--EAATDPEDALDSVEELDAEPDLDVEPGED 135 Query: 185 XXXXXXXXXXXXXXXXXXXVVTD-IEPGETEDGE---ATAATKTDEASTDDDEEIVEPTE 240 D ++ G+ ED E A AA + + DDDEEI EPTE Sbjct: 136 LDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQTA-DDDEEIAEPTE 194 Query: 241 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIE 300 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK KRIE Sbjct: 195 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 254 Query: 301 AGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 360 AGLYATQLMTELSERG KLP AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG Sbjct: 255 AGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 314 Query: 361 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 420 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE Sbjct: 315 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 374 Query: 421 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 480 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ Sbjct: 375 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 434 Query: 481 LGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 540 LGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQ Sbjct: 435 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQ 494 Query: 541 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 495 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 >tr|A1KM41|A1KM41_MYCBP Tax_Id=410289 (sigA)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 528 Score = 634 bits (1635), Expect = e-179 Identities = 346/454 (76%), Positives = 355/454 (78%), Gaps = 7/454 (1%) Query: 125 RTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEXXXXXXXXXXXXXXXXXEPDLDVEPSXX 184 R + KS KAPSA+ H TK A KD + E EPDLDVEP Sbjct: 78 RAAAKSAAAKAPSARGHATKPRAPKDAQH--EAATDPEDALDSVEELDAEPDLDVEPGED 135 Query: 185 XXXXXXXXXXXXXXXXXXXVVTD-IEPGETEDGE---ATAATKTDEASTDDDEEIVEPTE 240 D ++ G+ ED E A AA + + DDDEEI EPTE Sbjct: 136 LDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQTA-DDDEEIAEPTE 194 Query: 241 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIE 300 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK KRIE Sbjct: 195 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 254 Query: 301 AGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 360 AGLYATQLMTELSERG KLP AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG Sbjct: 255 AGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 314 Query: 361 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 420 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE Sbjct: 315 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 374 Query: 421 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 480 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ Sbjct: 375 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 434 Query: 481 LGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 540 LGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQ Sbjct: 435 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQ 494 Query: 541 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 495 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 >tr|Q60158|Q60158_MYCBO Tax_Id=1765 (rpoV)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 528 Score = 634 bits (1635), Expect = e-179 Identities = 346/454 (76%), Positives = 355/454 (78%), Gaps = 7/454 (1%) Query: 125 RTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEXXXXXXXXXXXXXXXXXEPDLDVEPSXX 184 R + KS KAPSA+ H TK A KD + E EPDLDVEP Sbjct: 78 RAAAKSAAAKAPSARGHATKPRAPKDAQH--EAATDPEDALDSVEELDAEPDLDVEPGED 135 Query: 185 XXXXXXXXXXXXXXXXXXXVVTD-IEPGETEDGE---ATAATKTDEASTDDDEEIVEPTE 240 D ++ G+ ED E A AA + + DDDEEI EPTE Sbjct: 136 LDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQTA-DDDEEIAEPTE 194 Query: 241 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIE 300 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK KRIE Sbjct: 195 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 254 Query: 301 AGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 360 AGLYATQLMTELSERG KLP AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG Sbjct: 255 AGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 314 Query: 361 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 420 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE Sbjct: 315 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 374 Query: 421 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 480 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ Sbjct: 375 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 434 Query: 481 LGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 540 LGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQ Sbjct: 435 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQ 494 Query: 541 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 495 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 >tr|A5WQV6|A5WQV6_MYCTF Tax_Id=336982 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 528 Score = 634 bits (1635), Expect = e-179 Identities = 346/454 (76%), Positives = 355/454 (78%), Gaps = 7/454 (1%) Query: 125 RTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEXXXXXXXXXXXXXXXXXEPDLDVEPSXX 184 R + KS KAPSA+ H TK A KD + E EPDLDVEP Sbjct: 78 RAAAKSAAAKAPSARGHATKPRAPKDAQH--EAATDPEDALDSVEELDAEPDLDVEPGED 135 Query: 185 XXXXXXXXXXXXXXXXXXXVVTD-IEPGETEDGE---ATAATKTDEASTDDDEEIVEPTE 240 D ++ G+ ED E A AA + + DDDEEI EPTE Sbjct: 136 LDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQTA-DDDEEIAEPTE 194 Query: 241 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIE 300 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK KRIE Sbjct: 195 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 254 Query: 301 AGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 360 AGLYATQLMTELSERG KLP AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG Sbjct: 255 AGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 314 Query: 361 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 420 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE Sbjct: 315 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 374 Query: 421 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 480 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ Sbjct: 375 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 434 Query: 481 LGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 540 LGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQ Sbjct: 435 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQ 494 Query: 541 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 495 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 >tr|Q59502|Q59502_MYCBO Tax_Id=1765 (rpoV)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 528 Score = 632 bits (1630), Expect = e-179 Identities = 345/454 (75%), Positives = 354/454 (77%), Gaps = 7/454 (1%) Query: 125 RTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEXXXXXXXXXXXXXXXXXEPDLDVEPSXX 184 R + KS KAPSA+ H TK A KD + E EPDLDVEP Sbjct: 78 RAAAKSAAAKAPSARGHATKPRAPKDAQH--EAATDPEDALDSVEELDAEPDLDVEPGED 135 Query: 185 XXXXXXXXXXXXXXXXXXXVVTD-IEPGETEDGE---ATAATKTDEASTDDDEEIVEPTE 240 D ++ G+ ED E A AA + + DDDEEI EPTE Sbjct: 136 LDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQTA-DDDEEIAEPTE 194 Query: 241 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIE 300 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK KRIE Sbjct: 195 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 254 Query: 301 AGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 360 AGLYATQLMTELSERG KLP AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG Sbjct: 255 AGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 314 Query: 361 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 420 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE Sbjct: 315 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 374 Query: 421 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 480 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ Sbjct: 375 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 434 Query: 481 LGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 540 LGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQ Sbjct: 435 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQ 494 Query: 541 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 VYGVTRERIRQIESKTMSKL HPSRSQVLRDYLD Sbjct: 495 VYGVTRERIRQIESKTMSKLHHPSRSQVLRDYLD 528 >tr|A2VL47|A2VL47_MYCTU Tax_Id=348776 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis C] Length = 528 Score = 631 bits (1627), Expect = e-179 Identities = 345/454 (75%), Positives = 354/454 (77%), Gaps = 7/454 (1%) Query: 125 RTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEXXXXXXXXXXXXXXXXXEPDLDVEPSXX 184 R + KS KAPSA+ H TK A KD + E EPDLDVEP Sbjct: 78 RAAAKSAAAKAPSARGHATKPRAPKDAQH--EAATDPEDALDSVEELDAEPDLDVEPGED 135 Query: 185 XXXXXXXXXXXXXXXXXXXVVTD-IEPGETEDGE---ATAATKTDEASTDDDEEIVEPTE 240 D ++ G+ ED E A AA + + DDDEEI EPTE Sbjct: 136 LDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQTA-DDDEEIAEPTE 194 Query: 241 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIE 300 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK KRIE Sbjct: 195 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 254 Query: 301 AGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 360 AGLYATQLMTELSERG KLP AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG Sbjct: 255 AGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 314 Query: 361 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 420 MAFLDLIQEGNL LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE Sbjct: 315 MAFLDLIQEGNLRLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 374 Query: 421 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 480 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ Sbjct: 375 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 434 Query: 481 LGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 540 LGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQ Sbjct: 435 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQ 494 Query: 541 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 495 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 >tr|A0QIN4|A0QIN4_MYCA1 Tax_Id=243243 RecName: Full=RNA polymerase sigma factor;[Mycobacterium avium] Length = 496 Score = 624 bits (1608), Expect = e-176 Identities = 339/453 (74%), Positives = 352/453 (77%), Gaps = 12/453 (2%) Query: 125 RTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEXXXXXXXXXXXXXXXXXEPDLDVEPSXX 184 R+S K D KAPS + AAK DP+ EPDL+ EP Sbjct: 53 RSSAKGADAKAPSGRG----TKAAKGGPADPDALDTDGAVEDLDT----EPDLEGEPGED 104 Query: 185 XXXXXXXXXXXXXXXXXXXVVTDIEPGETEDGE---ATAATKTDEASTDDDEEIVEPTEK 241 DIEPG+ E+GE A A + D+D+EI EP+EK Sbjct: 105 LDIDTDLNLDDLEEDVAADDA-DIEPGDAEEGEDEEAAAPKAAGATAADEDDEIAEPSEK 163 Query: 242 DKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEA 301 DKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK KRIEA Sbjct: 164 DKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEA 223 Query: 302 GLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGM 361 GLYATQLM+E++ERG KLP AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGM Sbjct: 224 GLYATQLMSEMAERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGM 283 Query: 362 AFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 421 AFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV Sbjct: 284 AFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 343 Query: 422 INKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQL 481 INKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQL Sbjct: 344 INKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQL 403 Query: 482 GDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQV 541 GDFI FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQV Sbjct: 404 GDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQV 463 Query: 542 YGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 YGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 464 YGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 496 >tr|Q73W40|Q73W40_MYCPA Tax_Id=1770 (sigA)RecName: Full=RNA polymerase sigma factor;[Mycobacterium paratuberculosis] Length = 509 Score = 620 bits (1599), Expect = e-175 Identities = 338/453 (74%), Positives = 351/453 (77%), Gaps = 12/453 (2%) Query: 125 RTSVKSVDTKAPSAQDHTTKASAAKDTLNDPEXXXXXXXXXXXXXXXXXEPDLDVEPSXX 184 R+S K D KAPSA+ AAK DP+ EPDL+ EP Sbjct: 66 RSSAKGADAKAPSARG----TKAAKGGPADPDALDTDGAVEDLDT----EPDLEGEPGED 117 Query: 185 XXXXXXXXXXXXXXXXXXXVVTDIEPGETEDGE---ATAATKTDEASTDDDEEIVEPTEK 241 DIEPG+ E+GE A A D+D+EI EP+EK Sbjct: 118 LDIDTDLNLDDLEEDVAADDA-DIEPGDAEEGEDEEAAAPKAAGATVADEDDEIAEPSEK 176 Query: 242 DKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEA 301 DKASGDFVWDEDESEALRQAR+DAELTASADSVRAYLKQIGK KRIEA Sbjct: 177 DKASGDFVWDEDESEALRQARRDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEA 236 Query: 302 GLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGM 361 GLYATQLM+E++ERG KLP AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGM Sbjct: 237 GLYATQLMSEMAERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGM 296 Query: 362 AFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 421 AFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV Sbjct: 297 AFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 356 Query: 422 INKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQL 481 INKLGRIQRELLQD GREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQL Sbjct: 357 INKLGRIQRELLQDPGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQL 416 Query: 482 GDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQV 541 GDFI FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQV Sbjct: 417 GDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQV 476 Query: 542 YGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 YGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 477 YGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 509 >tr|B2HLZ7|B2HLZ7_MYCMM Tax_Id=216594 (sigA)RecName: Full=RNA polymerase sigma factor;[Mycobacterium marinum] Length = 501 Score = 605 bits (1560), Expect = e-171 Identities = 315/367 (85%), Positives = 322/367 (87%), Gaps = 1/367 (0%) Query: 209 EPGETEDGEATAATKTDEAST-DDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAEL 267 E + EDG+ A T D+EEI EP+EKDKASGDFVWDEDESEALRQARKDAEL Sbjct: 135 EGDDAEDGDGAKAPAAAAPGTPSDEEEIAEPSEKDKASGDFVWDEDESEALRQARKDAEL 194 Query: 268 TASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRDM 327 TASADSVRAYLKQIGK KRIEAGLYATQLM EL++RG KLP AQRRDM Sbjct: 195 TASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMAELTDRGEKLPAAQRRDM 254 Query: 328 MWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGY 387 MWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGY Sbjct: 255 MWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGY 314 Query: 388 KFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAK 447 KFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAK Sbjct: 315 KFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAK 374 Query: 448 EMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQ 507 EMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQLQ Sbjct: 375 EMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQ 434 Query: 508 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 567 SVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ Sbjct: 435 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 494 Query: 568 VLRDYLD 574 VLRDYLD Sbjct: 495 VLRDYLD 501 >tr|A0PT58|A0PT58_MYCUA Tax_Id=362242 (sigA)RecName: Full=RNA polymerase sigma factor;[Mycobacterium ulcerans] Length = 501 Score = 603 bits (1556), Expect = e-170 Identities = 316/368 (85%), Positives = 322/368 (87%), Gaps = 4/368 (1%) Query: 207 DIEPGETEDGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAE 266 D E G+ A AA T D+EEI EP+EKDKASGDFVWDEDESEALRQARKDAE Sbjct: 138 DAEYGDGAKAPAAAAPGT----ASDEEEIAEPSEKDKASGDFVWDEDESEALRQARKDAE 193 Query: 267 LTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRD 326 LTASADSVRAYLKQIGK KRIEAGLYATQLM EL++RG KLP AQRRD Sbjct: 194 LTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMAELTDRGEKLPAAQRRD 253 Query: 327 MMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 386 MMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG Sbjct: 254 MMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 313 Query: 387 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 446 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA Sbjct: 314 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 373 Query: 447 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQL 506 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQL Sbjct: 374 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 433 Query: 507 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 566 QSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS Sbjct: 434 QSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 493 Query: 567 QVLRDYLD 574 QVLRDYLD Sbjct: 494 QVLRDYLD 501 >tr|A1T7X4|A1T7X4_MYCVP Tax_Id=350058 RecName: Full=RNA polymerase sigma factor;[Mycobacterium vanbaalenii] Length = 478 Score = 600 bits (1548), Expect = e-169 Identities = 310/363 (85%), Positives = 319/363 (87%) Query: 212 ETEDGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELTASA 271 + ED + A A DD+ + EP+EKDKASGDFVWDE+ESEALRQARKDAELTASA Sbjct: 116 DDEDADEGAPKAAKPAKDGDDDGVAEPSEKDKASGDFVWDEEESEALRQARKDAELTASA 175 Query: 272 DSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWIC 331 DSVRAYLKQIGK KRIEAGLYATQLM EL+++G KLP AQRRDMMWIC Sbjct: 176 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMAELADKGEKLPAAQRRDMMWIC 235 Query: 332 RDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 391 RDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST Sbjct: 236 RDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 295 Query: 392 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 451 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI Sbjct: 296 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 355 Query: 452 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLE 511 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQLQSVLE Sbjct: 356 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLE 415 Query: 512 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 571 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD Sbjct: 416 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 475 Query: 572 YLD 574 YLD Sbjct: 476 YLD 478 >tr|B1MCW6|B1MCW6_MYCA9 Tax_Id=561007 RecName: Full=RNA polymerase sigma factor;[Mycobacterium abscessus] Length = 467 Score = 598 bits (1543), Expect = e-169 Identities = 316/380 (83%), Positives = 325/380 (85%), Gaps = 15/380 (3%) Query: 207 DIEPGETEDGEAT------------AATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDE 254 DIEPG+ D + AA EA D D+E P+EKDKASGDFVWDE+E Sbjct: 91 DIEPGDDLDTDLADDADIEADLAEAAAEPEPEAEADGDDE---PSEKDKASGDFVWDEEE 147 Query: 255 SEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSE 314 SEALRQARKDAELTASADSVRAYLKQIGK KRIEAGLYATQ++TEL+E Sbjct: 148 SEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQIVTELTE 207 Query: 315 RGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGL 374 +G KLP AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGL Sbjct: 208 KGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGL 267 Query: 375 IRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQ 434 IRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQ Sbjct: 268 IRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQ 327 Query: 435 DLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXX 494 DLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI Sbjct: 328 DLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAV 387 Query: 495 XXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIES 554 FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIES Sbjct: 388 DAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIES 447 Query: 555 KTMSKLRHPSRSQVLRDYLD 574 KTMSKLRHPSRSQVLRDYLD Sbjct: 448 KTMSKLRHPSRSQVLRDYLD 467 >tr|Q1B9Z1|Q1B9Z1_MYCSS Tax_Id=164756 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 480 Score = 597 bits (1540), Expect = e-168 Identities = 312/371 (84%), Positives = 322/371 (86%), Gaps = 3/371 (0%) Query: 207 DIEPGETEDGEATAATK---TDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARK 263 D + +T D +A AA K A +DEEI EP+EKDKASGDFVWDE+ESEALRQARK Sbjct: 110 DGDDADTPDAKAKAAPKGGAVPAAPATEDEEIAEPSEKDKASGDFVWDEEESEALRQARK 169 Query: 264 DAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQ 323 DAELTASADSVRAYLKQIGK KRIEAGL+ATQ + EL+E+G KLP Q Sbjct: 170 DAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFATQKLAELAEKGEKLPVQQ 229 Query: 324 RRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 383 RRDM WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY Sbjct: 230 RRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 289 Query: 384 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE 443 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE Sbjct: 290 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE 349 Query: 444 ELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQ 503 ELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQ Sbjct: 350 ELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQ 409 Query: 504 DQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP 563 DQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP Sbjct: 410 DQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP 469 Query: 564 SRSQVLRDYLD 574 SRSQVLRDYLD Sbjct: 470 SRSQVLRDYLD 480 >tr|A1UF21|A1UF21_MYCSK Tax_Id=189918 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 480 Score = 597 bits (1540), Expect = e-168 Identities = 312/371 (84%), Positives = 322/371 (86%), Gaps = 3/371 (0%) Query: 207 DIEPGETEDGEATAATK---TDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARK 263 D + +T D +A AA K A +DEEI EP+EKDKASGDFVWDE+ESEALRQARK Sbjct: 110 DGDDADTPDAKAKAAPKGGAVPAAPATEDEEIAEPSEKDKASGDFVWDEEESEALRQARK 169 Query: 264 DAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQ 323 DAELTASADSVRAYLKQIGK KRIEAGL+ATQ + EL+E+G KLP Q Sbjct: 170 DAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFATQKLAELAEKGEKLPVQQ 229 Query: 324 RRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 383 RRDM WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY Sbjct: 230 RRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 289 Query: 384 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE 443 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE Sbjct: 290 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE 349 Query: 444 ELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQ 503 ELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQ Sbjct: 350 ELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQ 409 Query: 504 DQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP 563 DQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP Sbjct: 410 DQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP 469 Query: 564 SRSQVLRDYLD 574 SRSQVLRDYLD Sbjct: 470 SRSQVLRDYLD 480 >tr|A0QW02|A0QW02_MYCS2 Tax_Id=246196 RecName: Full=RNA polymerase sigma factor;[Mycobacterium smegmatis] Length = 466 Score = 596 bits (1537), Expect = e-168 Identities = 310/363 (85%), Positives = 319/363 (87%) Query: 212 ETEDGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELTASA 271 E E+ EA AAT + D++I EP+EKDKASGDFVWDE+ESEALRQARKDAELTASA Sbjct: 104 EDEEEEADAATPAVATAKAADDDIDEPSEKDKASGDFVWDEEESEALRQARKDAELTASA 163 Query: 272 DSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWIC 331 DSVRAYLKQIGK KRIEAGLYATQ + EL+E+G KLP QRRDM WIC Sbjct: 164 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQKLAELAEKGEKLPVQQRRDMQWIC 223 Query: 332 RDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 391 RDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST Sbjct: 224 RDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 283 Query: 392 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 451 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI Sbjct: 284 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 343 Query: 452 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLE 511 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQLQSVLE Sbjct: 344 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLE 403 Query: 512 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 571 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD Sbjct: 404 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 463 Query: 572 YLD 574 YLD Sbjct: 464 YLD 466 >tr|Q59552|Q59552_MYCSM Tax_Id=1772 (mysA)RecName: Full=RNA polymerase sigma factor;[Mycobacterium smegmatis] Length = 466 Score = 596 bits (1537), Expect = e-168 Identities = 310/363 (85%), Positives = 319/363 (87%) Query: 212 ETEDGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELTASA 271 E E+ EA AAT + D++I EP+EKDKASGDFVWDE+ESEALRQARKDAELTASA Sbjct: 104 EDEEEEADAATPAVATAKAADDDIDEPSEKDKASGDFVWDEEESEALRQARKDAELTASA 163 Query: 272 DSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWIC 331 DSVRAYLKQIGK KRIEAGLYATQ + EL+E+G KLP QRRDM WIC Sbjct: 164 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQKLAELAEKGEKLPVQQRRDMQWIC 223 Query: 332 RDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 391 RDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST Sbjct: 224 RDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 283 Query: 392 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 451 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI Sbjct: 284 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 343 Query: 452 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLE 511 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQLQSVLE Sbjct: 344 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLE 403 Query: 512 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 571 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD Sbjct: 404 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRD 463 Query: 572 YLD 574 YLD Sbjct: 464 YLD 466 >tr|A4TCR0|A4TCR0_MYCGI Tax_Id=350054 RecName: Full=RNA polymerase sigma factor;[Mycobacterium gilvum] Length = 488 Score = 596 bits (1536), Expect = e-168 Identities = 310/369 (84%), Positives = 318/369 (86%) Query: 206 TDIEPGETEDGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDA 265 +D E E + AT A DD+ + EP+EKDKASGDFVWDE+ESEALRQARKDA Sbjct: 120 SDDEAAEADPVVATTKAAAKPAKEADDDSLPEPSEKDKASGDFVWDEEESEALRQARKDA 179 Query: 266 ELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRR 325 ELTASADSVRAYLKQIGK KRIEAGLY TQLM E +E+G KL TAQRR Sbjct: 180 ELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYCTQLMAEFAEKGEKLTTAQRR 239 Query: 326 DMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTK 385 D MWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTK Sbjct: 240 DYMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTK 299 Query: 386 GYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEEL 445 GYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEEL Sbjct: 300 GYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEEL 359 Query: 446 AKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQ 505 AKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQ Sbjct: 360 AKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQ 419 Query: 506 LQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSR 565 LQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSR Sbjct: 420 LQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSR 479 Query: 566 SQVLRDYLD 574 SQVLRDYLD Sbjct: 480 SQVLRDYLD 488 >tr|A3PYI3|A3PYI3_MYCSJ Tax_Id=164757 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 480 Score = 596 bits (1536), Expect = e-168 Identities = 311/371 (83%), Positives = 321/371 (86%), Gaps = 3/371 (0%) Query: 207 DIEPGETEDGEATAATK---TDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARK 263 D + +T D + AA K A +DEEI EP+EKDKASGDFVWDE+ESEALRQARK Sbjct: 110 DGDDADTPDAKVKAAPKGGAVPAAPATEDEEIAEPSEKDKASGDFVWDEEESEALRQARK 169 Query: 264 DAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQ 323 DAELTASADSVRAYLKQIGK KRIEAGL+ATQ + EL+E+G KLP Q Sbjct: 170 DAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFATQKLAELAEKGEKLPVQQ 229 Query: 324 RRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 383 RRDM WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY Sbjct: 230 RRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 289 Query: 384 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE 443 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE Sbjct: 290 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE 349 Query: 444 ELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQ 503 ELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQ Sbjct: 350 ELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQ 409 Query: 504 DQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP 563 DQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP Sbjct: 410 DQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP 469 Query: 564 SRSQVLRDYLD 574 SRSQVLRDYLD Sbjct: 470 SRSQVLRDYLD 480 >tr|Q0S1J1|Q0S1J1_RHOSR Tax_Id=101510 (sigA)RecName: Full=RNA polymerase sigma factor;[Rhodococcus sp.] Length = 457 Score = 592 bits (1526), Expect = e-167 Identities = 309/368 (83%), Positives = 320/368 (86%), Gaps = 3/368 (0%) Query: 207 DIEPGETEDGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAE 266 DI G+ + E+ + + +DEE EP+EKDKASGDFVWDE+ESEALRQARKDAE Sbjct: 93 DITEGDLAEVESDVV---EVVAVGEDEETEEPSEKDKASGDFVWDEEESEALRQARKDAE 149 Query: 267 LTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRD 326 LTASADSVRAYLKQIGK KRIEAGLYATQ+M ELS+ G KLP AQRRD Sbjct: 150 LTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQIMQELSDSGEKLPAAQRRD 209 Query: 327 MMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 386 M WICRDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG Sbjct: 210 MSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 269 Query: 387 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 446 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA Sbjct: 270 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 329 Query: 447 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQL 506 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQL Sbjct: 330 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 389 Query: 507 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 566 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS Sbjct: 390 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 449 Query: 567 QVLRDYLD 574 QVLRDYLD Sbjct: 450 QVLRDYLD 457 >tr|C1B466|C1B466_RHOOB Tax_Id=632772 (sigA)RecName: Full=RNA polymerase sigma factor;[Rhodococcus opacus] Length = 457 Score = 592 bits (1526), Expect = e-167 Identities = 309/368 (83%), Positives = 320/368 (86%), Gaps = 3/368 (0%) Query: 207 DIEPGETEDGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAE 266 DI G+ + E+ + + +DEE EP+EKDKASGDFVWDE+ESEALRQARKDAE Sbjct: 93 DITEGDLAEVESDVV---EVVAVGEDEETEEPSEKDKASGDFVWDEEESEALRQARKDAE 149 Query: 267 LTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRD 326 LTASADSVRAYLKQIGK KRIEAGLYATQ+M ELS+ G KLP AQRRD Sbjct: 150 LTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQIMQELSDSGEKLPAAQRRD 209 Query: 327 MMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 386 M WICRDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG Sbjct: 210 MSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 269 Query: 387 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 446 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA Sbjct: 270 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 329 Query: 447 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQL 506 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQL Sbjct: 330 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 389 Query: 507 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 566 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS Sbjct: 390 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 449 Query: 567 QVLRDYLD 574 QVLRDYLD Sbjct: 450 QVLRDYLD 457 >tr|C6L2K0|C6L2K0_RHOOP Tax_Id=37919 (sigA)RecName: Full=RNA polymerase sigma factor;[Rhodococcus opacus] Length = 457 Score = 592 bits (1526), Expect = e-167 Identities = 309/368 (83%), Positives = 320/368 (86%), Gaps = 3/368 (0%) Query: 207 DIEPGETEDGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAE 266 DI G+ + E+ + + +DEE EP+EKDKASGDFVWDE+ESEALRQARKDAE Sbjct: 93 DITEGDLAEVESDVV---EVVAVGEDEETEEPSEKDKASGDFVWDEEESEALRQARKDAE 149 Query: 267 LTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRD 326 LTASADSVRAYLKQIGK KRIEAGLYATQ+M ELS+ G KLP AQRRD Sbjct: 150 LTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQIMQELSDSGEKLPAAQRRD 209 Query: 327 MMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 386 M WICRDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG Sbjct: 210 MSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 269 Query: 387 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 446 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA Sbjct: 270 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 329 Query: 447 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQL 506 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQL Sbjct: 330 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 389 Query: 507 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 566 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS Sbjct: 390 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 449 Query: 567 QVLRDYLD 574 QVLRDYLD Sbjct: 450 QVLRDYLD 457 >tr|C0ZYT9|C0ZYT9_RHOE4 Tax_Id=234621 (sigA)RecName: Full=RNA polymerase sigma factor;[Rhodococcus erythropolis] Length = 452 Score = 587 bits (1514), Expect = e-165 Identities = 306/368 (83%), Positives = 319/368 (86%), Gaps = 2/368 (0%) Query: 207 DIEPGETEDGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAE 266 DI G+ + E+ A +D+E EP+EKDKASGDFVWDE+ESEALRQARKDAE Sbjct: 87 DITDGDLAEVESDVVEVV--AVGEDEETAAEPSEKDKASGDFVWDEEESEALRQARKDAE 144 Query: 267 LTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRD 326 LTASADSVRAYLKQIGK KRIEAGLYA Q+M +L+++G KLP AQRRD Sbjct: 145 LTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAVQIMQDLADKGEKLPAAQRRD 204 Query: 327 MMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 386 M WICRDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG Sbjct: 205 MSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 264 Query: 387 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 446 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA Sbjct: 265 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 324 Query: 447 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQL 506 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQL Sbjct: 325 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 384 Query: 507 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 566 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS Sbjct: 385 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 444 Query: 567 QVLRDYLD 574 QVLRDYLD Sbjct: 445 QVLRDYLD 452 >tr|C3JLL5|C3JLL5_RHOER Tax_Id=596309 RecName: Full=RNA polymerase sigma factor;[Rhodococcus erythropolis SK121] Length = 430 Score = 587 bits (1514), Expect = e-165 Identities = 306/368 (83%), Positives = 319/368 (86%), Gaps = 2/368 (0%) Query: 207 DIEPGETEDGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAE 266 DI G+ + E+ A +D+E EP+EKDKASGDFVWDE+ESEALRQARKDAE Sbjct: 65 DITDGDLAEVESDVVEVV--AVGEDEETAAEPSEKDKASGDFVWDEEESEALRQARKDAE 122 Query: 267 LTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRD 326 LTASADSVRAYLKQIGK KRIEAGLYA Q+M +L+++G KLP AQRRD Sbjct: 123 LTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAVQIMQDLADKGEKLPAAQRRD 182 Query: 327 MMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 386 M WICRDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG Sbjct: 183 MSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 242 Query: 387 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 446 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA Sbjct: 243 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 302 Query: 447 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQL 506 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQL Sbjct: 303 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 362 Query: 507 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 566 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS Sbjct: 363 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 422 Query: 567 QVLRDYLD 574 QVLRDYLD Sbjct: 423 QVLRDYLD 430 >tr|Q8VM92|Q8VM92_RHOFA Tax_Id=1828 (rofA)RecName: Full=RNA polymerase sigma factor;[Rhodococcus fascians] Length = 474 Score = 576 bits (1484), Expect = e-162 Identities = 297/344 (86%), Positives = 307/344 (89%) Query: 231 DDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXX 290 +++ EPT +DKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 131 EEDATSEPTAEDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAE 190 Query: 291 XXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVV 350 KRIEAGL+A + M E +E+G KLP AQRRDM WICRDG+RAKNHLLEANLRLVV Sbjct: 191 EEVELAKRIEAGLFAVEKMRESAEKGEKLPVAQRRDMTWICRDGNRAKNHLLEANLRLVV 250 Query: 351 SLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQAR 410 SLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQAR Sbjct: 251 SLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQAR 310 Query: 411 TIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLD 470 TIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLD Sbjct: 311 TIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLD 370 Query: 471 QTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDG 530 QTIGDEGDSQLGDFI FTLLQDQLQSVLETLSEREAGVVRLRFGLTDG Sbjct: 371 QTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDG 430 Query: 531 QPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 QPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 431 QPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 474 >tr|Q5YT84|Q5YT84_NOCFA Tax_Id=37329 (sigA)RecName: Full=RNA polymerase sigma factor;[Nocardia farcinica] Length = 454 Score = 573 bits (1476), Expect = e-161 Identities = 300/368 (81%), Positives = 311/368 (84%) Query: 207 DIEPGETEDGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAE 266 D+E E + + + E +D+E EP+ DKASGDFVWDE+ESEALRQARKDAE Sbjct: 87 DLEVDEGDLADDPEIAEAAEEPAEDEEAEEEPSAADKASGDFVWDEEESEALRQARKDAE 146 Query: 267 LTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRD 326 LTASADSVRAYLKQIGK KRIEAGLYA + M E +E G KLP A RRD Sbjct: 147 LTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAEKMREFAESGEKLPVAMRRD 206 Query: 327 MMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 386 WI RDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG Sbjct: 207 YNWIVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 266 Query: 387 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 446 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA Sbjct: 267 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 326 Query: 447 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQL 506 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQL Sbjct: 327 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 386 Query: 507 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 566 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS Sbjct: 387 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 446 Query: 567 QVLRDYLD 574 QVLRDYLD Sbjct: 447 QVLRDYLD 454 >tr|C2APF0|C2APF0_TSUPA Tax_Id=521096 RecName: Full=RNA polymerase sigma factor;[Tsukamurella paurometabola DSM 20162] Length = 483 Score = 565 bits (1457), Expect = e-159 Identities = 300/370 (81%), Positives = 313/370 (84%), Gaps = 5/370 (1%) Query: 206 TDIEPGETEDGEA-TAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKD 264 +D + D +A +A TK A +DDE P+E+DKASGDFVWDE+ESEALRQARKD Sbjct: 118 SDDTADDVSDSKAKSAVTKPAPADAEDDE----PSEQDKASGDFVWDEEESEALRQARKD 173 Query: 265 AELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQR 324 AELTASADSVRAYLKQIGK KRIEAGL+A Q++ ERG K R Sbjct: 174 AELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFAEQMINRWVERGEKPAIGIR 233 Query: 325 RDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 384 RDM WI RDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT Sbjct: 234 RDMNWIARDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 293 Query: 385 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 444 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE Sbjct: 294 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 353 Query: 445 LAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQD 504 LAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQD Sbjct: 354 LAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQD 413 Query: 505 QLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPS 564 QLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPS Sbjct: 414 QLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPS 473 Query: 565 RSQVLRDYLD 574 RSQVLRDYLD Sbjct: 474 RSQVLRDYLD 483 >tr|D0LBS9|D0LBS9_9ACTO Tax_Id=526226 SubName: Full=RNA polymerase sigma factor RpoD;[Gordonia bronchialis DSM 43247] Length = 489 Score = 560 bits (1444), Expect = e-157 Identities = 294/364 (80%), Positives = 307/364 (84%), Gaps = 1/364 (0%) Query: 212 ETEDGEATA-ATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELTAS 270 E ED T A T + +T E +K +GDFVWDE+ESEALRQARKDAELTAS Sbjct: 126 EDEDNSVTVVAADTAKTATGKSAAAKETATPEKTAGDFVWDEEESEALRQARKDAELTAS 185 Query: 271 ADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWI 330 ADSVRAYLKQIGK KRIEAGL+AT+ + + E G K+ TAQ+RD+ WI Sbjct: 186 ADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFATERLRRIMESGEKITTAQKRDLNWI 245 Query: 331 CRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFS 390 RDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFS Sbjct: 246 SRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFS 305 Query: 391 TYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMD 450 TYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMD Sbjct: 306 TYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMD 365 Query: 451 ITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVL 510 ITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQLQSVL Sbjct: 366 ITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL 425 Query: 511 ETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLR 570 ETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLR Sbjct: 426 ETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLR 485 Query: 571 DYLD 574 DYLD Sbjct: 486 DYLD 489 >tr|C6WAJ3|C6WAJ3_ACTMD Tax_Id=446462 RecName: Full=RNA polymerase sigma factor;[Actinosynnema mirum] Length = 435 Score = 552 bits (1423), Expect = e-155 Identities = 293/372 (78%), Positives = 304/372 (81%), Gaps = 8/372 (2%) Query: 211 GETEDGEATAATKTDEASTDDDEEIVEPTEKDKAS--------GDFVWDEDESEALRQAR 262 GE ++ E DE D+ E I EP E++ A GDFVWDE+ESEALRQAR Sbjct: 64 GEGDEPEEIEGAPGDEDLVDEVELIDEPVEEEPAEEENAKPGEGDFVWDEEESEALRQAR 123 Query: 263 KDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTA 322 KDAELTASADSVRAYLKQIGK KRIEAGLYA + + + KL Sbjct: 124 KDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERLRRAEDESEKLTPQ 183 Query: 323 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 382 RRD+ WI RDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD Sbjct: 184 MRRDLRWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 243 Query: 383 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP 442 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP Sbjct: 244 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP 303 Query: 443 EELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLL 502 EELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLL Sbjct: 304 EELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLL 363 Query: 503 QDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRH 562 QDQLQSVL TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRH Sbjct: 364 QDQLQSVLATLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRH 423 Query: 563 PSRSQVLRDYLD 574 PSRSQVLRDYLD Sbjct: 424 PSRSQVLRDYLD 435 >tr|C7MYK8|C7MYK8_SACVD Tax_Id=471857 RecName: Full=RNA polymerase sigma factor;[Saccharomonospora viridis] Length = 439 Score = 547 bits (1410), Expect = e-153 Identities = 289/360 (80%), Positives = 301/360 (83%), Gaps = 2/360 (0%) Query: 215 DGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSV 274 D +A D T+D +E E E D DFVWDE+ESEALRQARKDAELTASADSV Sbjct: 82 DVDAVEVDVVDATVTEDTDESDE--ESDANDPDFVWDEEESEALRQARKDAELTASADSV 139 Query: 275 RAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWICRDG 334 RAYLKQIGK KRIEAGLYA + + E G KL T RRD+ WI RDG Sbjct: 140 RAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERLRIAEEEGEKLSTQMRRDLKWIVRDG 199 Query: 335 DRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 394 +RAK+HLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG+KFSTYAT Sbjct: 200 ERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYAT 259 Query: 395 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPE 454 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI+PE Sbjct: 260 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPE 319 Query: 455 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLS 514 KVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQLQSVL+TLS Sbjct: 320 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLS 379 Query: 515 EREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 EREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 380 EREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 439 >tr|A4FAP1|A4FAP1_SACEN Tax_Id=405948 (sigA)RecName: Full=RNA polymerase sigma factor;[Saccharopolyspora erythraea] Length = 467 Score = 547 bits (1410), Expect = e-153 Identities = 290/366 (79%), Positives = 300/366 (81%) Query: 209 EPGETEDGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELT 268 EP ET+ A + +E V E KA DFVWDE+ESEALRQARKDAELT Sbjct: 102 EPIETDLTSPDVADLAEVEVEIPEEPTVPEDEDGKADSDFVWDEEESEALRQARKDAELT 161 Query: 269 ASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRDMM 328 ASADSVRAYLKQIGK KRIEAGLYA + + + E +L RRD+ Sbjct: 162 ASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERLRQAEEAEERLAMQMRRDLR 221 Query: 329 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 388 WI RDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK Sbjct: 222 WIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 281 Query: 389 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 448 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE Sbjct: 282 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 341 Query: 449 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQS 508 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQLQS Sbjct: 342 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 401 Query: 509 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 568 VL TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV Sbjct: 402 VLATLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 461 Query: 569 LRDYLD 574 LRDYLD Sbjct: 462 LRDYLD 467 >tr|C8XG60|C8XG60_NAKMY Tax_Id=479431 SubName: Full=RNA polymerase, sigma 70 subunit, RpoD subfamily;[Nakamurella multipartita] Length = 448 Score = 543 bits (1400), Expect = e-152 Identities = 290/385 (75%), Positives = 308/385 (80%), Gaps = 15/385 (3%) Query: 205 VTDIEPGETEDGEATAAT-KTDEASTDDDEEIVEPT-------------EKDKASGDFVW 250 V + T G A + DEA DD+EE P +K S +F W Sbjct: 64 VEQVADDATATGTAVVGVLEIDEADEDDEEEAATPAVAKAKPAGKDATPDKPGESEEFTW 123 Query: 251 D-EDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLM 309 D E+ESEAL+QARKDAELTASADSVRAYLKQIGK KRIEAGLY+++ M Sbjct: 124 DDEEESEALKQARKDAELTASADSVRAYLKQIGKVALLNAEEEVDLAKRIEAGLYSSERM 183 Query: 310 TELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQE 369 + E G +LP RRD+ WI RDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQE Sbjct: 184 RQFEEAGERLPNQMRRDLRWIKRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQE 243 Query: 370 GNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ 429 GNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ Sbjct: 244 GNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ 303 Query: 430 RELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXX 489 RELLQDLGREPTPEELAKEMDITP+KVLEIQQYAREPISLDQTIGDEGDSQLGDFI Sbjct: 304 RELLQDLGREPTPEELAKEMDITPDKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSE 363 Query: 490 XXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERI 549 FTLLQDQLQ+VL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERI Sbjct: 364 AVVAVDAVSFTLLQDQLQAVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERI 423 Query: 550 RQIESKTMSKLRHPSRSQVLRDYLD 574 RQIESKTMSKLRHPSRSQVLRDYL+ Sbjct: 424 RQIESKTMSKLRHPSRSQVLRDYLE 448 >tr|C0U2T9|C0U2T9_9ACTO Tax_Id=526225 RecName: Full=RNA polymerase sigma factor;[Geodermatophilus obscurus DSM 43160] Length = 429 Score = 543 bits (1398), Expect = e-152 Identities = 285/359 (79%), Positives = 296/359 (82%), Gaps = 1/359 (0%) Query: 217 EATAATKTDEASTDDDEEIVEPTEKDKASGDFVWD-EDESEALRQARKDAELTASADSVR 275 E AT A D E+ E+ GDF WD E+ESEALRQARKDAELTASADSVR Sbjct: 71 ETVVATPDGVAEAPTDSEVAAAPEEAAEGGDFEWDDEEESEALRQARKDAELTASADSVR 130 Query: 276 AYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWICRDGD 335 AYLKQIGK KRIEAGLY + + + E G KL RRD+ WI RDG+ Sbjct: 131 AYLKQIGKVALLNAEEEVDLAKRIEAGLYGAERLRQAEEEGQKLSPQMRRDLNWIVRDGE 190 Query: 336 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 395 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW Sbjct: 191 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 250 Query: 396 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEK 455 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP+K Sbjct: 251 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPDK 310 Query: 456 VLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSE 515 VLEIQQYAREPISLDQTIGDEGDSQLGDFI FTL+QDQL SVL+TLSE Sbjct: 311 VLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLMQDQLTSVLQTLSE 370 Query: 516 REAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 REAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 371 REAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 429 >tr|A4X4Z1|A4X4Z1_SALTO Tax_Id=369723 RecName: Full=RNA polymerase sigma factor;[Salinispora tropica] Length = 542 Score = 540 bits (1392), Expect = e-151 Identities = 286/364 (78%), Positives = 301/364 (82%), Gaps = 5/364 (1%) Query: 215 DGEATAATKTDEASTDDDEEIVEPTEKDKASG----DFVWDEDESEALRQARKDAELTAS 270 D E AA + ++ D+ E+ E D AS DF WD++ESEAL+QAR+DAELTAS Sbjct: 180 DAEELAA-EIEDVVVDEPAELTRAAEADAASSASDNDFEWDDEESEALKQARRDAELTAS 238 Query: 271 ADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWI 330 ADSVRAYLKQIGK KRIEAGLYAT+ + E K +RDMMWI Sbjct: 239 ADSVRAYLKQIGKVPLLNAEQEVELAKRIEAGLYATEQLRAAEEGDEKFNRDMQRDMMWI 298 Query: 331 CRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFS 390 RDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFS Sbjct: 299 SRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFS 358 Query: 391 TYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMD 450 TYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMD Sbjct: 359 TYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMD 418 Query: 451 ITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVL 510 ITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI F+LLQDQLQ VL Sbjct: 419 ITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFSLLQDQLQQVL 478 Query: 511 ETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLR 570 +TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLR Sbjct: 479 QTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLR 538 Query: 571 DYLD 574 DYLD Sbjct: 539 DYLD 542 >tr|A8M805|A8M805_SALAI Tax_Id=391037 RecName: Full=RNA polymerase sigma factor;[Salinispora arenicola] Length = 532 Score = 539 bits (1389), Expect = e-151 Identities = 286/370 (77%), Positives = 304/370 (82%), Gaps = 5/370 (1%) Query: 209 EPGETEDGEATAATKTDEASTDDDEEIVEPTEKDKASG----DFVWDEDESEALRQARKD 264 E G D E AA + ++ D+ E+ + E D A+ DF WD++ESEAL+QAR+D Sbjct: 164 EAGGEVDPEELAA-EIEDVVVDEPAELTQAAEADAANSATDNDFEWDDEESEALKQARRD 222 Query: 265 AELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQR 324 AELTASADSVRAYLKQIGK KRIEAGLYA + + E KL + Sbjct: 223 AELTASADSVRAYLKQIGKVPLLNAEQEVELAKRIEAGLYAAERLRATEEGEEKLNRDMQ 282 Query: 325 RDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 384 RD+MWI RDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT Sbjct: 283 RDLMWISRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 342 Query: 385 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 444 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE Sbjct: 343 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 402 Query: 445 LAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQD 504 LAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI F+LLQD Sbjct: 403 LAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFSLLQD 462 Query: 505 QLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPS 564 QLQ VL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPS Sbjct: 463 QLQQVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPS 522 Query: 565 RSQVLRDYLD 574 RSQVLRDYLD Sbjct: 523 RSQVLRDYLD 532 >tr|Q4JVA6|Q4JVA6_CORJK Tax_Id=306537 (sigA)RecName: Full=RNA polymerase sigma factor;[Corynebacterium jeikeium] Length = 544 Score = 538 bits (1386), Expect = e-151 Identities = 287/368 (77%), Positives = 298/368 (80%), Gaps = 1/368 (0%) Query: 207 DIEPGETEDGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAE 266 D++ E +D + D+ DDD E E E DK G FVWDEDES ALRQARKDAE Sbjct: 178 DLDDLEDDDDDIEDEDLEDDEDEDDDAED-EDEETDKNDGSFVWDEDESAALRQARKDAE 236 Query: 267 LTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRD 326 LTASADSVRAYLKQIGK KRIEAGLYA + E+ E G KL RRD Sbjct: 237 LTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAAYRLQEIKESGEKLSPMHRRD 296 Query: 327 MMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 386 + I RDG RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY KG Sbjct: 297 LREIDRDGRRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYVKG 356 Query: 387 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 446 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA Sbjct: 357 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 416 Query: 447 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQL 506 +EMDIT +KVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQL Sbjct: 417 REMDITVDKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 476 Query: 507 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 566 Q VL TLSEREAGVV+LRFGLTDG PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS Sbjct: 477 QDVLHTLSEREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 536 Query: 567 QVLRDYLD 574 QVLRDYLD Sbjct: 537 QVLRDYLD 544 >tr|C8RTJ4|C8RTJ4_CORJE Tax_Id=525262 (sigA)SubName: Full=RNA polymerase principal sigma factor SigA;[Corynebacterium jeikeium ATCC 43734] Length = 552 Score = 538 bits (1385), Expect = e-150 Identities = 287/368 (77%), Positives = 298/368 (80%), Gaps = 1/368 (0%) Query: 207 DIEPGETEDGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAE 266 D++ E +D + D+ DDD E E E DK G FVWDEDES ALRQARKDAE Sbjct: 186 DLDDLEDDDDDIEDDDLEDDEDEDDDAED-EDEETDKNDGSFVWDEDESAALRQARKDAE 244 Query: 267 LTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRD 326 LTASADSVRAYLKQIGK KRIEAGLYA + E+ E G KL RRD Sbjct: 245 LTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAAYRLQEIKESGEKLSPMHRRD 304 Query: 327 MMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 386 + I RDG RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY KG Sbjct: 305 LREIDRDGRRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYVKG 364 Query: 387 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 446 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA Sbjct: 365 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 424 Query: 447 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQL 506 +EMDIT +KVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQL Sbjct: 425 REMDITVDKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 484 Query: 507 QSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 566 Q VL TLSEREAGVV+LRFGLTDG PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS Sbjct: 485 QDVLHTLSEREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRS 544 Query: 567 QVLRDYLD 574 QVLRDYLD Sbjct: 545 QVLRDYLD 552 >tr|C4LJ07|C4LJ07_CORK4 Tax_Id=645127 (sigA)RecName: Full=RNA polymerase sigma factor;[Corynebacterium kroppenstedtii] Length = 621 Score = 534 bits (1376), Expect = e-149 Identities = 280/361 (77%), Positives = 301/361 (83%), Gaps = 5/361 (1%) Query: 214 EDGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELTASADS 273 +D ++ +T+++STDDD++ + D +G+FVWDEDES ALRQARKDAELTASADS Sbjct: 266 DDHSSSPIKRTNDSSTDDDDD-----DDDSDNGNFVWDEDESAALRQARKDAELTASADS 320 Query: 274 VRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWICRD 333 VRAYLKQIGK +RIEAGLYA + EL TKL AQ RD+ I D Sbjct: 321 VRAYLKQIGKVALLNAEQEVSLAQRIEAGLYANHKLEELKASNTKLSPAQSRDLRSIAHD 380 Query: 334 GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 393 G +AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA Sbjct: 381 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 440 Query: 394 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 453 TWWIRQAITR+MADQARTIRIPVHMVEVINKLGRIQRELLQDL REPTPEELA+EMDIT Sbjct: 441 TWWIRQAITRSMADQARTIRIPVHMVEVINKLGRIQRELLQDLSREPTPEELAREMDITE 500 Query: 454 EKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETL 513 +KVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQLQ VL+TL Sbjct: 501 DKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLKTL 560 Query: 514 SEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 573 +EREAGVVRLRFGLTDG PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL Sbjct: 561 TEREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 620 Query: 574 D 574 D Sbjct: 621 D 621 >tr|C4RDI4|C4RDI4_9ACTO Tax_Id=219305 RecName: Full=RNA polymerase sigma factor;[Micromonospora sp. ATCC 39149] Length = 534 Score = 531 bits (1369), Expect = e-149 Identities = 283/372 (76%), Positives = 301/372 (80%), Gaps = 11/372 (2%) Query: 207 DIEPGETEDGEATAATKTDEASTDDDEEIVEPTEKDKASG----DFVWDEDESEALRQAR 262 DI+P E A + ++ ++ E+ + D AS DF WD++ESEAL+QAR Sbjct: 170 DIDPEEL-------AAEIEDVVVEEPVELAQAAAADAASSATDNDFEWDDEESEALKQAR 222 Query: 263 KDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTA 322 +DAELTASADSVRAYLKQIGK KRIEAGLYA + + E KL Sbjct: 223 RDAELTASADSVRAYLKQIGKVPLLNAEQEVELAKRIEAGLYAAERLRAAEEGEEKLVRE 282 Query: 323 QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 382 RD+ WI RDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD Sbjct: 283 MVRDLGWISRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 342 Query: 383 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP 442 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP Sbjct: 343 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP 402 Query: 443 EELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLL 502 EELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI F+LL Sbjct: 403 EELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFSLL 462 Query: 503 QDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRH 562 QDQLQ VL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRH Sbjct: 463 QDQLQQVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRH 522 Query: 563 PSRSQVLRDYLD 574 PSRSQVLRDYLD Sbjct: 523 PSRSQVLRDYLD 534 >tr|C4DE52|C4DE52_9ACTO Tax_Id=446470 RecName: Full=RNA polymerase sigma factor;[Stackebrandtia nassauensis DSM 44728] Length = 559 Score = 530 bits (1366), Expect = e-148 Identities = 277/355 (78%), Positives = 298/355 (83%), Gaps = 3/355 (0%) Query: 220 AATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLK 279 +A KT + S+ D + E + S F WD+++SEAL+QARKDAE+TASADSVRAYLK Sbjct: 208 SAKKTAKKSSKKDGK---KDEDGEGSDGFDWDDEDSEALKQARKDAEMTASADSVRAYLK 264 Query: 280 QIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKN 339 QIGK KRIEAGLYA + + +L E G ++PT RRD+ W+ RDGDRAKN Sbjct: 265 QIGKVPLLNAAQEVELAKRIEAGLYAVERLRQLKEAGEEIPTQVRRDLEWVTRDGDRAKN 324 Query: 340 HLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQ 399 HLL ANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG+KFSTYATWWIRQ Sbjct: 325 HLLAANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQ 384 Query: 400 AITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEI 459 AITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP PEELAKEMDI+PEKVLEI Sbjct: 385 AITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPAPEELAKEMDISPEKVLEI 444 Query: 460 QQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAG 519 QQYAREPISLDQTIGDEGDSQLGDFI F+LLQ QLQ VL+TLSEREAG Sbjct: 445 QQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFSLLQGQLQQVLQTLSEREAG 504 Query: 520 VVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 VVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 505 VVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 559 >tr|Q9AGV7|Q9AGV7_CORAM Tax_Id=1697 (rpoD)RecName: Full=RNA polymerase sigma factor;[Corynebacterium ammoniagenes] Length = 467 Score = 530 bits (1364), Expect = e-148 Identities = 285/378 (75%), Positives = 299/378 (79%), Gaps = 10/378 (2%) Query: 207 DIEPGETEDGEATA----ATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQAR 262 D+ P ED A DE DD E E E+++ +G VWDEDES LRQAR Sbjct: 90 DVRPTADEDQAEVDFDPNAADEDEFGEPDDLEEDEDEEEEEDAGASVWDEDESATLRQAR 149 Query: 263 KDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELS------ERG 316 KDA+LTASADSVRAYLKQIGK +RIEAGLYA + E+ + Sbjct: 150 KDAQLTASADSVRAYLKQIGKVALLNAEQEVSLAERIEAGLYAQHRLDEMERLIAEGDAA 209 Query: 317 TKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIR 376 KL AQ+RD+ WI RDG +AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIR Sbjct: 210 AKLSPAQKRDLRWIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIR 269 Query: 377 AVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDL 436 AVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDL Sbjct: 270 AVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDL 329 Query: 437 GREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXX 496 GREPTP+ELAKEMDIT EKVLEIQQYAREPISLDQTIGDEGDSQLGDFI Sbjct: 330 GREPTPQELAKEMDITEEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDA 389 Query: 497 XXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 556 FTLLQDQLQ VL TLSEREAGVVRLRFGLTDG PRTLDEIGQVYGVTRERIRQIESKT Sbjct: 390 VSFTLLQDQLQDVLTTLSEREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKT 449 Query: 557 MSKLRHPSRSQVLRDYLD 574 MSKLRHPSRSQVLRDYLD Sbjct: 450 MSKLRHPSRSQVLRDYLD 467 >tr|Q9ANT7|Q9ANT7_9CORY Tax_Id=92706 (sigA)RecName: Full=RNA polymerase sigma factor;[[Brevibacterium] flavum] Length = 498 Score = 527 bits (1358), Expect = e-147 Identities = 282/366 (77%), Positives = 296/366 (80%), Gaps = 6/366 (1%) Query: 215 DGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSV 274 DG+ DE D E + E +E D+ G VWDEDES LRQARKDAELTASADSV Sbjct: 133 DGDDFVDGIEDEEDEDGVEALGEESEDDEEDGSSVWDEDESATLRQARKDAELTASADSV 192 Query: 275 RAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSE------RGTKLPTAQRRDMM 328 RAYLKQIGK KRIEAGLYAT M E+ E + KL A RRD+ Sbjct: 193 RAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEAFAAGDKDAKLTPAVRRDLR 252 Query: 329 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 388 I RDG +AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY+KGYK Sbjct: 253 AIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYK 312 Query: 389 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 448 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQ+LGREPTP+EL+KE Sbjct: 313 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKE 372 Query: 449 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQS 508 MDI+ EKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQLQ Sbjct: 373 MDISEEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQD 432 Query: 509 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 568 VLETLSEREAGVV+LRFGLTDG PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV Sbjct: 433 VLETLSEREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 492 Query: 569 LRDYLD 574 LRDYLD Sbjct: 493 LRDYLD 498 >tr|Q8NPA3|Q8NPA3_CORGL Tax_Id=1718 RecName: Full=RNA polymerase sigma factor;[Corynebacterium glutamicum] Length = 498 Score = 526 bits (1355), Expect = e-147 Identities = 281/366 (76%), Positives = 296/366 (80%), Gaps = 6/366 (1%) Query: 215 DGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSV 274 DG+ DE D E + E +E D+ G VWDEDES LRQARKDAELTASADSV Sbjct: 133 DGDDFVDGIEDEEDEDGVEALGEESEDDEEDGSSVWDEDESATLRQARKDAELTASADSV 192 Query: 275 RAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSE------RGTKLPTAQRRDMM 328 RAYLKQIGK KRIEAGLYAT M E+ E + KL A +RD+ Sbjct: 193 RAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEAFAAGDKDAKLTPAVKRDLR 252 Query: 329 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 388 I RDG +AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY+KGYK Sbjct: 253 AIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYK 312 Query: 389 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 448 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQ+LGREPTP+EL+KE Sbjct: 313 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKE 372 Query: 449 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQS 508 MDI+ EKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQLQ Sbjct: 373 MDISEEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQD 432 Query: 509 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 568 VLETLSEREAGVV+LRFGLTDG PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV Sbjct: 433 VLETLSEREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 492 Query: 569 LRDYLD 574 LRDYLD Sbjct: 493 LRDYLD 498 >tr|Q6M4B0|Q6M4B0_CORGL Tax_Id=1718 (sigA)RecName: Full=RNA polymerase sigma factor;[Corynebacterium glutamicum] Length = 494 Score = 526 bits (1355), Expect = e-147 Identities = 281/366 (76%), Positives = 296/366 (80%), Gaps = 6/366 (1%) Query: 215 DGEATAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSV 274 DG+ DE D E + E +E D+ G VWDEDES LRQARKDAELTASADSV Sbjct: 129 DGDDFVDGIEDEEDEDGVEALGEESEDDEEDGSSVWDEDESATLRQARKDAELTASADSV 188 Query: 275 RAYLKQIGKXXXXXXXXXXXXXKRIEAGLYATQLMTELSE------RGTKLPTAQRRDMM 328 RAYLKQIGK KRIEAGLYAT M E+ E + KL A +RD+ Sbjct: 189 RAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEAFAAGDKDAKLTPAVKRDLR 248 Query: 329 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 388 I RDG +AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY+KGYK Sbjct: 249 AIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYK 308 Query: 389 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 448 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQ+LGREPTP+EL+KE Sbjct: 309 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKE 368 Query: 449 MDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQS 508 MDI+ EKVLEIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQLQ Sbjct: 369 MDISEEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQD 428 Query: 509 VLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 568 VLETLSEREAGVV+LRFGLTDG PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV Sbjct: 429 VLETLSEREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 488 Query: 569 LRDYLD 574 LRDYLD Sbjct: 489 LRDYLD 494 Database: Amellifera_nr Posted date: Jan 15, 2010 5:10 AM Number of letters in database: 3,808,957,724 Number of sequences in database: 11,153,314 Lambda K H 0.314 0.131 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11153314 Number of Hits to DB: 3,157,065,546 Number of extensions: 113129012 Number of successful extensions: 349787 Number of sequences better than 10.0: 6975 Number of HSP's gapped: 346117 Number of HSP's successfully gapped: 7638 Length of query: 574 Length of database: 3,808,957,724 Length adjustment: 143 Effective length of query: 431 Effective length of database: 2,214,033,822 Effective search space: 954248577282 Effective search space used: 954248577282 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 83 (36.6 bits)