BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ML1076 (263 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,153,314 sequences; 3,808,957,724 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|Q9CCA6|Q9CCA6_MYCLE Tax_Id=1769 (sigE)SubName: Full=ECF subfa... 543 e-153 tr|B8ZQZ2|B8ZQZ2_MYCLB Tax_Id=561304 (sigE)SubName: Full=ECF sub... 543 e-153 tr|B2HS46|B2HS46_MYCMM Tax_Id=216594 (sigE)SubName: Full=Alterna... 400 e-110 tr|A0PVW3|A0PVW3_MYCUA Tax_Id=362242 (sigE)SubName: Full=Alterna... 399 e-109 tr|Q7U0C9|Q7U0C9_MYCBO Tax_Id=1765 (sigE)SubName: Full=ALTERNATI... 397 e-109 tr|O06289|O06289_MYCTU Tax_Id=1773 (sigE)SubName: Full=ALTERNATI... 397 e-109 tr|C6DUF1|C6DUF1_MYCTK Tax_Id=478434 SubName: Full=Alternative R... 397 e-109 tr|C1AML5|C1AML5_MYCBT Tax_Id=561275 (sigE)SubName: Full=RNA pol... 397 e-109 tr|A5U1R9|A5U1R9_MYCTA Tax_Id=419947 (sigE)SubName: Full=RNA pol... 397 e-109 tr|A1KI09|A1KI09_MYCBP Tax_Id=410289 (sigE)SubName: Full=Alterna... 397 e-109 tr|A5WLP9|A5WLP9_MYCTF Tax_Id=336982 SubName: Full=Alternative R... 397 e-109 tr|A4KGE5|A4KGE5_MYCTU Tax_Id=395095 SubName: Full=Alternative R... 397 e-109 tr|A2VHC1|A2VHC1_MYCTU Tax_Id=348776 SubName: Full=Alternative R... 397 e-109 tr|A0QCH1|A0QCH1_MYCA1 Tax_Id=243243 SubName: Full=RNA polymeras... 394 e-108 tr|Q73WV3|Q73WV3_MYCPA Tax_Id=1770 (sigE)SubName: Full=SigE;[Myc... 392 e-107 tr|O05735|O05735_MYCAV Tax_Id=1764 (sigE)SubName: Full=Extracyto... 392 e-107 tr|Q1B4T5|Q1B4T5_MYCSS Tax_Id=164756 SubName: Full=RNA polymeras... 362 2e-98 tr|A1UKA2|A1UKA2_MYCSK Tax_Id=189918 SubName: Full=RNA polymeras... 362 2e-98 tr|A3Q3Q6|A3Q3Q6_MYCSJ Tax_Id=164757 SubName: Full=RNA polymeras... 362 2e-98 tr|A1TDM1|A1TDM1_MYCVP Tax_Id=350058 SubName: Full=RNA polymeras... 355 3e-96 tr|A4T8X0|A4T8X0_MYCGI Tax_Id=350054 SubName: Full=RNA polymeras... 351 4e-95 tr|Q49971|Q49971_MYCLE Tax_Id=1769 SubName: Full=RpoE;[Mycobacte... 351 5e-95 tr|A0R2D4|A0R2D4_MYCS2 Tax_Id=246196 SubName: Full=Extracytoplas... 350 1e-94 tr|O05767|O05767_MYCSM Tax_Id=1772 (sigE)SubName: Full=Extracyto... 347 6e-94 tr|B1MLM1|B1MLM1_MYCA9 Tax_Id=561007 SubName: Full=Probable alte... 316 1e-84 tr|Q5YQG0|Q5YQG0_NOCFA Tax_Id=37329 SubName: Full=Putative sigma... 310 8e-83 tr|Q0S3Y2|Q0S3Y2_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,... 304 6e-81 tr|C1AZL3|C1AZL3_RHOOB Tax_Id=632772 (sigE)SubName: Full=RNA pol... 304 7e-81 tr|C1A2N1|C1A2N1_RHOE4 Tax_Id=234621 (sigE)SubName: Full=Putativ... 298 4e-79 tr|C3JTT3|C3JTT3_RHOER Tax_Id=596309 SubName: Full=Sigma factor,... 298 4e-79 tr|D0L8U6|D0L8U6_9ACTO Tax_Id=526226 SubName: Full=RNA polymeras... 287 9e-76 tr|C2ARI5|C2ARI5_TSUPA Tax_Id=521096 SubName: Full=RNA polymeras... 280 1e-73 tr|C7MVJ5|C7MVJ5_SACVD Tax_Id=471857 SubName: Full=RNA polymeras... 268 4e-70 tr|C6WL01|C6WL01_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras... 268 4e-70 tr|A4F8J4|A4F8J4_SACEN Tax_Id=405948 SubName: Full=Putative ECF ... 267 8e-70 tr|Q6NHY6|Q6NHY6_CORDI Tax_Id=1717 SubName: Full=Putative ECF fa... 258 5e-67 tr|C8XJ69|C8XJ69_NAKMY Tax_Id=479431 SubName: Full=RNA polymeras... 258 6e-67 tr|Q8FQE2|Q8FQE2_COREF Tax_Id=152794 SubName: Full=Putative RNA ... 257 1e-66 tr|C8NMR0|C8NMR0_COREF Tax_Id=196164 (sigE)SubName: Full=RNA pol... 257 1e-66 tr|C0XQL3|C0XQL3_9CORY Tax_Id=525263 SubName: Full=RNA polymeras... 256 2e-66 tr|C0E7D8|C0E7D8_9CORY Tax_Id=566549 SubName: Full=Putative unch... 255 3e-66 tr|C0U796|C0U796_9ACTO Tax_Id=526225 SubName: Full=RNA polymeras... 255 4e-66 tr|Q8NRD2|Q8NRD2_CORGL Tax_Id=1718 SubName: Full=DNA-directed RN... 253 1e-65 tr|A4QD85|A4QD85_CORGB Tax_Id=340322 SubName: Full=Putative unch... 253 1e-65 tr|Q6M649|Q6M649_CORGL Tax_Id=1718 (sigE)SubName: Full=PUTATIVE ... 253 1e-65 tr|C5VDT3|C5VDT3_9CORY Tax_Id=553207 SubName: Full=RNA polymeras... 252 3e-65 tr|Q9FBL1|Q9FBL1_STRCO Tax_Id=1902 SubName: Full=Putative ECF-su... 250 1e-64 tr|B4V167|B4V167_9ACTO Tax_Id=465541 SubName: Full=RNA polymeras... 249 3e-64 tr|C0WFJ4|C0WFJ4_9CORY Tax_Id=525260 SubName: Full=ECF family DN... 248 6e-64 tr|B5HA10|B5HA10_STRPR Tax_Id=457429 SubName: Full=RNA polymeras... 247 1e-63 >tr|Q9CCA6|Q9CCA6_MYCLE Tax_Id=1769 (sigE)SubName: Full=ECF subfamily sigma subunit;[Mycobacterium leprae] Length = 263 Score = 543 bits (1400), Expect = e-153 Identities = 263/263 (100%), Positives = 263/263 (100%) Query: 1 MGDGIGMEREGRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNLLSPTIMSHPPPSRD 60 MGDGIGMEREGRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNLLSPTIMSHPPPSRD Sbjct: 1 MGDGIGMEREGRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNLLSPTIMSHPPPSRD 60 Query: 61 DDWVEPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQET 120 DDWVEPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQET Sbjct: 61 DDWVEPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQET 120 Query: 121 FIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQI 180 FIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQI Sbjct: 121 FIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQI 180 Query: 181 YHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAL 240 YHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAL Sbjct: 181 YHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAL 240 Query: 241 RDYLLTAHPRDGATTDATHVKSA 263 RDYLLTAHPRDGATTDATHVKSA Sbjct: 241 RDYLLTAHPRDGATTDATHVKSA 263 >tr|B8ZQZ2|B8ZQZ2_MYCLB Tax_Id=561304 (sigE)SubName: Full=ECF subfamily sigma subunit;[Mycobacterium leprae] Length = 263 Score = 543 bits (1400), Expect = e-153 Identities = 263/263 (100%), Positives = 263/263 (100%) Query: 1 MGDGIGMEREGRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNLLSPTIMSHPPPSRD 60 MGDGIGMEREGRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNLLSPTIMSHPPPSRD Sbjct: 1 MGDGIGMEREGRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNLLSPTIMSHPPPSRD 60 Query: 61 DDWVEPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQET 120 DDWVEPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQET Sbjct: 61 DDWVEPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQET 120 Query: 121 FIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQI 180 FIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQI Sbjct: 121 FIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQI 180 Query: 181 YHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAL 240 YHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAL Sbjct: 181 YHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAL 240 Query: 241 RDYLLTAHPRDGATTDATHVKSA 263 RDYLLTAHPRDGATTDATHVKSA Sbjct: 241 RDYLLTAHPRDGATTDATHVKSA 263 >tr|B2HS46|B2HS46_MYCMM Tax_Id=216594 (sigE)SubName: Full=Alternative RNA polymerase sigma factor SigE;[Mycobacterium marinum] Length = 255 Score = 400 bits (1028), Expect = e-110 Identities = 203/243 (83%), Positives = 211/243 (86%), Gaps = 2/243 (0%) Query: 7 MEREGRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNLLSPTIMSHPPPSRDDDWVEP 66 MER GR GNT+ LRV GDE P DGR PE+ IT L S T MSHP RDD+W E Sbjct: 1 MERGGRGLGNTEWQLRVAAGDELPMSDGREKPEEHTITTL-STTTMSHPQLVRDDEWAET 59 Query: 67 FDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFR 126 D L GTAVFDATGDKA MPSW+ELVRQHA RVY LAYRLSGNQ DAEDLTQETFIRVFR Sbjct: 60 SDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFR 119 Query: 127 SVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRL 186 SVQNYQPGTFEGWLHRITTNLFLDMVRRR+RIRM+ALP+DYDRVPAD+PNPEQIYHDSRL Sbjct: 120 SVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRL 179 Query: 187 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLT 246 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L Sbjct: 180 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LA 238 Query: 247 AHP 249 AHP Sbjct: 239 AHP 241 >tr|A0PVW3|A0PVW3_MYCUA Tax_Id=362242 (sigE)SubName: Full=Alternative RNA polymerase sigma factor SigE;[Mycobacterium ulcerans] Length = 255 Score = 399 bits (1025), Expect = e-109 Identities = 203/243 (83%), Positives = 210/243 (86%), Gaps = 2/243 (0%) Query: 7 MEREGRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNLLSPTIMSHPPPSRDDDWVEP 66 MER GR GNT LRV GDE P DGR PE+ IT L S T MSHP RDD+W E Sbjct: 1 MERGGRGLGNTAWQLRVAAGDELPMSDGREKPEEHTITTL-STTTMSHPQLVRDDEWAET 59 Query: 67 FDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFR 126 D L GTAVFDATGDKA MPSW+ELVRQHA RVY LAYRLSGNQ DAEDLTQETFIRVFR Sbjct: 60 SDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFR 119 Query: 127 SVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRL 186 SVQNYQPGTFEGWLHRITTNLFLDMVRRR+RIRM+ALP+DYDRVPAD+PNPEQIYHDSRL Sbjct: 120 SVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRL 179 Query: 187 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLT 246 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L Sbjct: 180 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LA 238 Query: 247 AHP 249 AHP Sbjct: 239 AHP 241 >tr|Q7U0C9|Q7U0C9_MYCBO Tax_Id=1765 (sigE)SubName: Full=ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGE;[Mycobacterium bovis] Length = 257 Score = 397 bits (1020), Expect = e-109 Identities = 207/252 (82%), Positives = 215/252 (85%), Gaps = 6/252 (2%) Query: 11 GRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNL--LSPTIMSHPPPSRDDDWVEPFD 68 G GNT+ L V GD+ PT A+ EDL IT + LSPT MSHP RDD WVEP D Sbjct: 6 GPRVGNTESQLCVADGDDLPTYCS-ANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64 Query: 69 ALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSV 128 LQGTAVFDATGDKATMPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSV Sbjct: 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124 Query: 129 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGP 188 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRM+ALP+DYDRVPADEPNPEQIYHD+RLGP Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184 Query: 189 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAH 248 DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L AH Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LAAH 243 Query: 249 PRDGATTDATHV 260 P G A HV Sbjct: 244 PEHGEC--AVHV 253 >tr|O06289|O06289_MYCTU Tax_Id=1773 (sigE)SubName: Full=ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGE; SubName: Full=RNA polymerase sigma-70 factor, ECF subfamily; SubName: Full=SigE;[Mycobacterium tuberculosis] Length = 257 Score = 397 bits (1020), Expect = e-109 Identities = 207/252 (82%), Positives = 215/252 (85%), Gaps = 6/252 (2%) Query: 11 GRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNL--LSPTIMSHPPPSRDDDWVEPFD 68 G GNT+ L V GD+ PT A+ EDL IT + LSPT MSHP RDD WVEP D Sbjct: 6 GPRVGNTESQLCVADGDDLPTYCS-ANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64 Query: 69 ALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSV 128 LQGTAVFDATGDKATMPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSV Sbjct: 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124 Query: 129 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGP 188 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRM+ALP+DYDRVPADEPNPEQIYHD+RLGP Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184 Query: 189 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAH 248 DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L AH Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LAAH 243 Query: 249 PRDGATTDATHV 260 P G A HV Sbjct: 244 PEHGEC--AVHV 253 >tr|C6DUF1|C6DUF1_MYCTK Tax_Id=478434 SubName: Full=Alternative RNA polymerase sigma factor sigE;[Mycobacterium tuberculosis] Length = 257 Score = 397 bits (1020), Expect = e-109 Identities = 207/252 (82%), Positives = 215/252 (85%), Gaps = 6/252 (2%) Query: 11 GRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNL--LSPTIMSHPPPSRDDDWVEPFD 68 G GNT+ L V GD+ PT A+ EDL IT + LSPT MSHP RDD WVEP D Sbjct: 6 GPRVGNTESQLCVADGDDLPTYCS-ANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64 Query: 69 ALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSV 128 LQGTAVFDATGDKATMPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSV Sbjct: 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124 Query: 129 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGP 188 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRM+ALP+DYDRVPADEPNPEQIYHD+RLGP Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184 Query: 189 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAH 248 DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L AH Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LAAH 243 Query: 249 PRDGATTDATHV 260 P G A HV Sbjct: 244 PEHGEC--AVHV 253 >tr|C1AML5|C1AML5_MYCBT Tax_Id=561275 (sigE)SubName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 257 Score = 397 bits (1020), Expect = e-109 Identities = 207/252 (82%), Positives = 215/252 (85%), Gaps = 6/252 (2%) Query: 11 GRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNL--LSPTIMSHPPPSRDDDWVEPFD 68 G GNT+ L V GD+ PT A+ EDL IT + LSPT MSHP RDD WVEP D Sbjct: 6 GPRVGNTESQLCVADGDDLPTYCS-ANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64 Query: 69 ALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSV 128 LQGTAVFDATGDKATMPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSV Sbjct: 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124 Query: 129 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGP 188 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRM+ALP+DYDRVPADEPNPEQIYHD+RLGP Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184 Query: 189 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAH 248 DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L AH Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LAAH 243 Query: 249 PRDGATTDATHV 260 P G A HV Sbjct: 244 PEHGEC--AVHV 253 >tr|A5U1R9|A5U1R9_MYCTA Tax_Id=419947 (sigE)SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium tuberculosis] Length = 257 Score = 397 bits (1020), Expect = e-109 Identities = 207/252 (82%), Positives = 215/252 (85%), Gaps = 6/252 (2%) Query: 11 GRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNL--LSPTIMSHPPPSRDDDWVEPFD 68 G GNT+ L V GD+ PT A+ EDL IT + LSPT MSHP RDD WVEP D Sbjct: 6 GPRVGNTESQLCVADGDDLPTYCS-ANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64 Query: 69 ALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSV 128 LQGTAVFDATGDKATMPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSV Sbjct: 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124 Query: 129 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGP 188 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRM+ALP+DYDRVPADEPNPEQIYHD+RLGP Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184 Query: 189 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAH 248 DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L AH Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LAAH 243 Query: 249 PRDGATTDATHV 260 P G A HV Sbjct: 244 PEHGEC--AVHV 253 >tr|A1KI09|A1KI09_MYCBP Tax_Id=410289 (sigE)SubName: Full=Alternative RNA polymerase sigma factor sigE;[Mycobacterium bovis] Length = 257 Score = 397 bits (1020), Expect = e-109 Identities = 207/252 (82%), Positives = 215/252 (85%), Gaps = 6/252 (2%) Query: 11 GRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNL--LSPTIMSHPPPSRDDDWVEPFD 68 G GNT+ L V GD+ PT A+ EDL IT + LSPT MSHP RDD WVEP D Sbjct: 6 GPRVGNTESQLCVADGDDLPTYCS-ANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64 Query: 69 ALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSV 128 LQGTAVFDATGDKATMPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSV Sbjct: 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124 Query: 129 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGP 188 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRM+ALP+DYDRVPADEPNPEQIYHD+RLGP Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184 Query: 189 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAH 248 DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L AH Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LAAH 243 Query: 249 PRDGATTDATHV 260 P G A HV Sbjct: 244 PEHGEC--AVHV 253 >tr|A5WLP9|A5WLP9_MYCTF Tax_Id=336982 SubName: Full=Alternative RNA polymerase sigma factor sigE;[Mycobacterium tuberculosis] Length = 257 Score = 397 bits (1020), Expect = e-109 Identities = 207/252 (82%), Positives = 215/252 (85%), Gaps = 6/252 (2%) Query: 11 GRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNL--LSPTIMSHPPPSRDDDWVEPFD 68 G GNT+ L V GD+ PT A+ EDL IT + LSPT MSHP RDD WVEP D Sbjct: 6 GPRVGNTESQLCVADGDDLPTYCS-ANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64 Query: 69 ALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSV 128 LQGTAVFDATGDKATMPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSV Sbjct: 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124 Query: 129 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGP 188 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRM+ALP+DYDRVPADEPNPEQIYHD+RLGP Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184 Query: 189 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAH 248 DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L AH Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LAAH 243 Query: 249 PRDGATTDATHV 260 P G A HV Sbjct: 244 PEHGEC--AVHV 253 >tr|A4KGE5|A4KGE5_MYCTU Tax_Id=395095 SubName: Full=Alternative RNA polymerase sigma factor sigE;[Mycobacterium tuberculosis str. Haarlem] Length = 257 Score = 397 bits (1020), Expect = e-109 Identities = 207/252 (82%), Positives = 215/252 (85%), Gaps = 6/252 (2%) Query: 11 GRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNL--LSPTIMSHPPPSRDDDWVEPFD 68 G GNT+ L V GD+ PT A+ EDL IT + LSPT MSHP RDD WVEP D Sbjct: 6 GPRVGNTESQLCVADGDDLPTYCS-ANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64 Query: 69 ALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSV 128 LQGTAVFDATGDKATMPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSV Sbjct: 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124 Query: 129 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGP 188 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRM+ALP+DYDRVPADEPNPEQIYHD+RLGP Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184 Query: 189 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAH 248 DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L AH Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LAAH 243 Query: 249 PRDGATTDATHV 260 P G A HV Sbjct: 244 PEHGEC--AVHV 253 >tr|A2VHC1|A2VHC1_MYCTU Tax_Id=348776 SubName: Full=Alternative RNA polymerase sigma factor sigE;[Mycobacterium tuberculosis C] Length = 257 Score = 397 bits (1020), Expect = e-109 Identities = 207/252 (82%), Positives = 215/252 (85%), Gaps = 6/252 (2%) Query: 11 GRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNL--LSPTIMSHPPPSRDDDWVEPFD 68 G GNT+ L V GD+ PT A+ EDL IT + LSPT MSHP RDD WVEP D Sbjct: 6 GPRVGNTESQLCVADGDDLPTYCS-ANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64 Query: 69 ALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSV 128 LQGTAVFDATGDKATMPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSV Sbjct: 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124 Query: 129 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGP 188 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRM+ALP+DYDRVPADEPNPEQIYHD+RLGP Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184 Query: 189 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAH 248 DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L AH Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LAAH 243 Query: 249 PRDGATTDATHV 260 P G A HV Sbjct: 244 PEHGEC--AVHV 253 >tr|A0QCH1|A0QCH1_MYCA1 Tax_Id=243243 SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium avium] Length = 424 Score = 394 bits (1012), Expect = e-108 Identities = 202/257 (78%), Positives = 215/257 (83%), Gaps = 2/257 (0%) Query: 7 MEREGRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNLLSPTIMSHPPPSRDDDWVEP 66 M+R R TGNT+ L V DE P + G + E+LIIT LLSP+ MSH D W EP Sbjct: 1 MDRGARETGNTEWQLPVAANDEMPLI-GMPNSEELIITTLLSPSSMSHAHDPSADGWAEP 59 Query: 67 FDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFR 126 D LQGTAVFDATGDK MPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFR Sbjct: 60 SDGLQGTAVFDATGDKTAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFR 119 Query: 127 SVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRL 186 SVQNYQPGTFEGWLHRITTNLFLDMVRRR+RIRM+ALP+DY+RVPADEPNPE+IYHDSRL Sbjct: 120 SVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYERVPADEPNPEEIYHDSRL 179 Query: 187 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLT 246 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L Sbjct: 180 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LA 238 Query: 247 AHPRDGATTDATHVKSA 263 AHP A + V SA Sbjct: 239 AHPDHDALRASLGVVSA 255 >tr|Q73WV3|Q73WV3_MYCPA Tax_Id=1770 (sigE)SubName: Full=SigE;[Mycobacterium paratuberculosis] Length = 251 Score = 392 bits (1008), Expect = e-107 Identities = 198/243 (81%), Positives = 210/243 (86%), Gaps = 2/243 (0%) Query: 7 MEREGRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNLLSPTIMSHPPPSRDDDWVEP 66 M+R R TGNT+ L V DE P + G + E+LIIT LLSP+ MSH D W EP Sbjct: 1 MDRGARETGNTEWQLPVAANDEMPLI-GMPNSEELIITTLLSPSSMSHAHDPSADGWAEP 59 Query: 67 FDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFR 126 D LQGTAVFDATGDK MPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFR Sbjct: 60 SDGLQGTAVFDATGDKTAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFR 119 Query: 127 SVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRL 186 SVQNYQPGTFEGWLHRITTNLFLDMVRRR+RIRM+ALP+DY+RVPADEPNPE+IYHDSRL Sbjct: 120 SVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYERVPADEPNPEEIYHDSRL 179 Query: 187 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLT 246 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L Sbjct: 180 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LA 238 Query: 247 AHP 249 AHP Sbjct: 239 AHP 241 >tr|O05735|O05735_MYCAV Tax_Id=1764 (sigE)SubName: Full=Extracytoplasmic function alternative sigma factor;[Mycobacterium avium] Length = 251 Score = 392 bits (1008), Expect = e-107 Identities = 198/243 (81%), Positives = 210/243 (86%), Gaps = 2/243 (0%) Query: 7 MEREGRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNLLSPTIMSHPPPSRDDDWVEP 66 M+R R TGNT+ L V DE P + G + E+LIIT LLSP+ MSH D W EP Sbjct: 1 MDRGARETGNTEWQLPVAANDEMPLI-GMPNSEELIITTLLSPSSMSHAHDPSADGWAEP 59 Query: 67 FDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFR 126 D LQGTAVFDATGDK MPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFR Sbjct: 60 SDGLQGTAVFDATGDKTAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFR 119 Query: 127 SVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRL 186 SVQNYQPGTFEGWLHRITTNLFLDMVRRR+RIRM+ALP+DY+RVPADEPNPE+IYHDSRL Sbjct: 120 SVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYERVPADEPNPEEIYHDSRL 179 Query: 187 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLT 246 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L Sbjct: 180 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LA 238 Query: 247 AHP 249 AHP Sbjct: 239 AHP 241 >tr|Q1B4T5|Q1B4T5_MYCSS Tax_Id=164756 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 260 Score = 362 bits (930), Expect = 2e-98 Identities = 184/231 (79%), Positives = 194/231 (83%), Gaps = 8/231 (3%) Query: 25 PGDESPTLDGRASPEDLIITNLLSPTIMSHPPPSRDDDWVEPFDALQGTAVFDATGDKAT 84 P E PT A+ + +P M+H D DWVEP D L GTAVFDATGDK T Sbjct: 37 PDLEDPTTTTTAAAQ-------AAPVSMAHLEQFSDSDWVEPTDELTGTAVFDATGDKTT 89 Query: 85 MPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRIT 144 MPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRIT Sbjct: 90 MPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRIT 149 Query: 145 TNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAA 204 TNLFLDMVRRR RIRM+ALP+DYDRVPAD+PNPEQIYHDSRLGPDLQAALDSLPPEFRAA Sbjct: 150 TNLFLDMVRRRGRIRMEALPEDYDRVPADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAA 209 Query: 205 VVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAHPRDGATT 255 VVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRD+ L H D AT+ Sbjct: 210 VVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDH-LARHAPDAATS 259 >tr|A1UKA2|A1UKA2_MYCSK Tax_Id=189918 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 260 Score = 362 bits (930), Expect = 2e-98 Identities = 184/231 (79%), Positives = 194/231 (83%), Gaps = 8/231 (3%) Query: 25 PGDESPTLDGRASPEDLIITNLLSPTIMSHPPPSRDDDWVEPFDALQGTAVFDATGDKAT 84 P E PT A+ + +P M+H D DWVEP D L GTAVFDATGDK T Sbjct: 37 PDLEDPTTTTTAAAQ-------AAPVSMAHLEQFSDSDWVEPTDELTGTAVFDATGDKTT 89 Query: 85 MPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRIT 144 MPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRIT Sbjct: 90 MPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRIT 149 Query: 145 TNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAA 204 TNLFLDMVRRR RIRM+ALP+DYDRVPAD+PNPEQIYHDSRLGPDLQAALDSLPPEFRAA Sbjct: 150 TNLFLDMVRRRGRIRMEALPEDYDRVPADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAA 209 Query: 205 VVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAHPRDGATT 255 VVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRD+ L H D AT+ Sbjct: 210 VVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDH-LARHAPDAATS 259 >tr|A3Q3Q6|A3Q3Q6_MYCSJ Tax_Id=164757 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 253 Score = 362 bits (929), Expect = 2e-98 Identities = 188/245 (76%), Positives = 197/245 (80%), Gaps = 6/245 (2%) Query: 15 GNTQCPLRVVPGDESPTLDGRASPEDLIITNLLS----PTIMSHPPPSRDDDWVEPFDAL 70 GN RV D G EDL T + P M+H D DWVEP D L Sbjct: 10 GNRNSADRVARNDAGQDSAG-PDMEDLTTTTTAAAQAAPVSMAHLEQFSDSDWVEPTDEL 68 Query: 71 QGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQN 130 GTAVFDATGDK TMPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSVQN Sbjct: 69 TGTAVFDATGDKTTMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQN 128 Query: 131 YQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDL 190 YQPGTFEGWLHRITTNLFLDMVRRR RIRM+ALP+DYDRVPAD+PNPEQI+HDSRLGPDL Sbjct: 129 YQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPADDPNPEQIFHDSRLGPDL 188 Query: 191 QAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAHPR 250 QAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR+Y L H Sbjct: 189 QAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALREY-LARHAP 247 Query: 251 DGATT 255 D AT+ Sbjct: 248 DAATS 252 >tr|A1TDM1|A1TDM1_MYCVP Tax_Id=350058 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium vanbaalenii] Length = 269 Score = 355 bits (911), Expect = 3e-96 Identities = 185/245 (75%), Positives = 195/245 (79%), Gaps = 3/245 (1%) Query: 14 TGNTQCPLRVVPGDES--PTLDGRASPEDLIITNLLSPTIMSHPPPSRDDDWVEPFDALQ 71 TG R P D + T D + + + +P M+H D WVEP D L Sbjct: 21 TGRVVAFERSSPSDRTHLETEDPTTTTQAPTAAPVAAPVTMAHLEQFTDAAWVEPADELT 80 Query: 72 GTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNY 131 GTAVFDATGDKA MPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSVQNY Sbjct: 81 GTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNY 140 Query: 132 QPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQ 191 QPGTFEGWLHRITTNLFLDMVRRR RIRM+ALP+DYDRVPADEPNPEQIYHDSRLGPDLQ Sbjct: 141 QPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPADEPNPEQIYHDSRLGPDLQ 200 Query: 192 AALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAHPRD 251 AALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR+Y L H Sbjct: 201 AALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALREY-LARHSDA 259 Query: 252 GATTD 256 GA D Sbjct: 260 GAGRD 264 >tr|A4T8X0|A4T8X0_MYCGI Tax_Id=350054 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium gilvum] Length = 282 Score = 351 bits (901), Expect = 4e-95 Identities = 180/234 (76%), Positives = 192/234 (82%), Gaps = 6/234 (2%) Query: 28 ESPTLDGRASPEDL-----IITNLLSPTIMSHPPPSRDDDWVEPFDALQGTAVFDATGDK 82 E PT +A + + + +P M+H + +WVEP D L GTAVFDATGDK Sbjct: 45 EDPTTTTQAPTSSVSAAAPVAAPVAAPVSMAHREQFTEAEWVEPTDELTGTAVFDATGDK 104 Query: 83 ATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHR 142 A MPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHR Sbjct: 105 AAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHR 164 Query: 143 ITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQAALDSLPPEFR 202 ITTNLFLDMVRRR RIRM+ALP+DYDRVPADEPNPEQIYHDSRLG DLQAALDSL PEFR Sbjct: 165 ITTNLFLDMVRRRGRIRMEALPEDYDRVPADEPNPEQIYHDSRLGADLQAALDSLAPEFR 224 Query: 203 AAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAHPRDGATTD 256 AAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRD+ L H GA D Sbjct: 225 AAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDH-LARHSDVGAGRD 277 >tr|Q49971|Q49971_MYCLE Tax_Id=1769 SubName: Full=RpoE;[Mycobacterium leprae] Length = 172 Score = 351 bits (900), Expect = 5e-95 Identities = 171/172 (99%), Positives = 172/172 (100%) Query: 92 VRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDM 151 +RQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDM Sbjct: 1 MRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDM 60 Query: 152 VRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIE 211 VRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIE Sbjct: 61 VRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIE 120 Query: 212 GLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAHPRDGATTDATHVKSA 263 GLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAHPRDGATTDATHVKSA Sbjct: 121 GLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAHPRDGATTDATHVKSA 172 >tr|A0R2D4|A0R2D4_MYCS2 Tax_Id=246196 SubName: Full=Extracytoplasmic function alternative sigma factor;[Mycobacterium smegmatis] Length = 257 Score = 350 bits (897), Expect = 1e-94 Identities = 171/197 (86%), Positives = 179/197 (90%) Query: 48 SPTIMSHPPPSRDDDWVEPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLS 107 +P M+H D DWVEP D GTAVFDATGD+A MPSW+ELVRQHA RVY LAYRLS Sbjct: 50 APVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLS 109 Query: 108 GNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDY 167 GNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRM+ALP+DY Sbjct: 110 GNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDY 169 Query: 168 DRVPADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLG 227 DRVPA++PNPEQIYHDSRLG DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLG Sbjct: 170 DRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLG 229 Query: 228 TVRSRIHRGRQALRDYL 244 TVRSRIHRGRQ LRDYL Sbjct: 230 TVRSRIHRGRQQLRDYL 246 >tr|O05767|O05767_MYCSM Tax_Id=1772 (sigE)SubName: Full=Extracytoplasmic function alternative sigma factor;[Mycobacterium smegmatis] Length = 204 Score = 347 bits (891), Expect = 6e-94 Identities = 170/193 (88%), Positives = 177/193 (91%) Query: 52 MSHPPPSRDDDWVEPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQH 111 M+H D DWVEP D GTAVFDATGD+A MPSW+ELVRQHA RVY LAYRLSGNQH Sbjct: 1 MAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQH 60 Query: 112 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVP 171 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRM+ALP+DYDRVP Sbjct: 61 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVP 120 Query: 172 ADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 231 A++PNPEQIYHDSRLG DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS Sbjct: 121 AEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 180 Query: 232 RIHRGRQALRDYL 244 RIHRGRQ LRDYL Sbjct: 181 RIHRGRQQLRDYL 193 >tr|B1MLM1|B1MLM1_MYCA9 Tax_Id=561007 SubName: Full=Probable alternative RNA polymerase sigma factor;[Mycobacterium abscessus] Length = 256 Score = 316 bits (810), Expect = 1e-84 Identities = 171/246 (69%), Positives = 190/246 (77%), Gaps = 4/246 (1%) Query: 12 RWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNLLSPTIMSHPPPSRDDDWVEPFDALQ 71 R +GN + V D PT A E + +S T +S P + D D L Sbjct: 14 RLSGNNTDGIWVEQADGLPTGGEAAVTEQE--EHAISLTRISEPDYTEFVDAANA-DELS 70 Query: 72 GTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNY 131 GTAVFDATGD+A MPSW+ELVR+HA RVY LAYRLSG+Q DAEDLTQETFIRVFRS+QNY Sbjct: 71 GTAVFDATGDQAAMPSWDELVREHADRVYRLAYRLSGSQQDAEDLTQETFIRVFRSLQNY 130 Query: 132 QPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQ 191 QPGTFEGWLHRITTNLFLDMVRRR RIRM+ALP+DYDRVPA +P+PEQIYHD++LG DLQ Sbjct: 131 QPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPATDPDPEQIYHDAQLGADLQ 190 Query: 192 AALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAHPRD 251 AALDSL PEFRAAVVLCDIEGLSYEEIGATL VKLGTVRSRIHRGRQA+R+Y L AH Sbjct: 191 AALDSLAPEFRAAVVLCDIEGLSYEEIGATLDVKLGTVRSRIHRGRQAIREY-LAAHSSA 249 Query: 252 GATTDA 257 A A Sbjct: 250 SALAAA 255 >tr|Q5YQG0|Q5YQG0_NOCFA Tax_Id=37329 SubName: Full=Putative sigma factor;[Nocardia farcinica] Length = 255 Score = 310 bits (795), Expect = 8e-83 Identities = 152/190 (80%), Positives = 167/190 (87%) Query: 68 DALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRS 127 + L GTA FDATGD++ MPSW+ELVR+HA RVY LAYRLSG+ DAEDLTQETFIRVFRS Sbjct: 63 EELSGTAAFDATGDRSVMPSWDELVREHADRVYRLAYRLSGDAQDAEDLTQETFIRVFRS 122 Query: 128 VQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLG 187 + NYQPGTFEGWLHRITTNLFLDMVRRR RIRM+ALP+DYDRVPA+ P PEQ+YHD+RL Sbjct: 123 LSNYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPAEGPGPEQVYHDARLD 182 Query: 188 PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTA 247 PDLQ+ALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR+YL Sbjct: 183 PDLQSALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALREYLAHN 242 Query: 248 HPRDGATTDA 257 + T DA Sbjct: 243 GSQQRYTADA 252 >tr|Q0S3Y2|Q0S3Y2_RHOSR Tax_Id=101510 SubName: Full=Sigma factor, sigma 70 type, group 4 (ECF);[Rhodococcus sp.] Length = 210 Score = 304 bits (779), Expect = 6e-81 Identities = 151/189 (79%), Positives = 166/189 (87%) Query: 56 PPSRDDDWVEPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAED 115 P R+ D L GTAVFDATG+K+ MPSW+ELVR+H RVY LAYRLSG+ DAED Sbjct: 8 PDERNADEQLSDAELTGTAVFDATGEKSAMPSWDELVREHGDRVYRLAYRLSGDAQDAED 67 Query: 116 LTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEP 175 LTQ+TFIRVFRS+ +YQPGTFEGWLHRITTNLFLDMVRRR RIRM+ALP+DYDRVPAD P Sbjct: 68 LTQDTFIRVFRSLSDYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPADGP 127 Query: 176 NPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHR 235 NPE+IYHD+RL DLQAALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHR Sbjct: 128 NPEEIYHDARLDADLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHR 187 Query: 236 GRQALRDYL 244 GRQALR++L Sbjct: 188 GRQALREHL 196 >tr|C1AZL3|C1AZL3_RHOOB Tax_Id=632772 (sigE)SubName: Full=RNA polymerase ECF-type sigma factor SigE;[Rhodococcus opacus] Length = 210 Score = 304 bits (778), Expect = 7e-81 Identities = 148/175 (84%), Positives = 162/175 (92%) Query: 70 LQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQ 129 L GTAVFDATG+K+ MPSW+ELVR+H RVY LAYRLSG+ DAEDLTQ+TFIRVFRS+ Sbjct: 22 LTGTAVFDATGEKSAMPSWDELVREHGDRVYRLAYRLSGDAQDAEDLTQDTFIRVFRSLS 81 Query: 130 NYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPD 189 +YQPGTFEGWLHRITTNLFLDMVRRR RIRM+ALP+DYDRVPAD PNPE+IYHD+RL D Sbjct: 82 DYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPADGPNPEEIYHDARLDAD 141 Query: 190 LQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 244 LQAALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR++L Sbjct: 142 LQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALREHL 196 >tr|C1A2N1|C1A2N1_RHOE4 Tax_Id=234621 (sigE)SubName: Full=Putative RNA polymerase ECF-type sigma factor SigE;[Rhodococcus erythropolis] Length = 273 Score = 298 bits (763), Expect = 4e-79 Identities = 146/175 (83%), Positives = 161/175 (92%) Query: 70 LQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQ 129 L GTAVFDATG+K++MPSW+ELVRQH RVY LAYRLSG+ DAEDLTQ+TFIRVFRS+ Sbjct: 86 LIGTAVFDATGEKSSMPSWDELVRQHGDRVYRLAYRLSGDAQDAEDLTQDTFIRVFRSLS 145 Query: 130 NYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPD 189 +YQPGTFEGWLHRITTNLFLDMVRRR RIRM+ALP+DYDRVP+ P+PEQIYHD+RL Sbjct: 146 DYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPSPGPDPEQIYHDARLDAG 205 Query: 190 LQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 244 LQAALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQA+RD+L Sbjct: 206 LQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAIRDHL 260 >tr|C3JTT3|C3JTT3_RHOER Tax_Id=596309 SubName: Full=Sigma factor, sigma 70 type, group 4;[Rhodococcus erythropolis SK121] Length = 273 Score = 298 bits (763), Expect = 4e-79 Identities = 146/175 (83%), Positives = 161/175 (92%) Query: 70 LQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQ 129 L GTAVFDATG+K++MPSW+ELVRQH RVY LAYRLSG+ DAEDLTQ+TFIRVFRS+ Sbjct: 86 LIGTAVFDATGEKSSMPSWDELVRQHGDRVYRLAYRLSGDAQDAEDLTQDTFIRVFRSLS 145 Query: 130 NYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPD 189 +YQPGTFEGWLHRITTNLFLDMVRRR RIRM+ALP+DYDRVP+ P+PEQIYHD+RL Sbjct: 146 DYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPSPGPDPEQIYHDARLDAG 205 Query: 190 LQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 244 LQAALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQA+RD+L Sbjct: 206 LQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAIRDHL 260 >tr|D0L8U6|D0L8U6_9ACTO Tax_Id=526226 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Gordonia bronchialis DSM 43247] Length = 201 Score = 287 bits (734), Expect = 9e-76 Identities = 139/173 (80%), Positives = 154/173 (89%) Query: 72 GTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNY 131 GTA FDATG+ MPSW+ELVR+HA RVY LAYRLSGNQHDAEDLTQETFIRVFRS+ NY Sbjct: 14 GTAGFDATGNDLLMPSWDELVREHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLSNY 73 Query: 132 QPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQ 191 +PGTFEGWLHRITTNLFLDMVRRR +IRM+ALP++YDRVPAD P+P+Q++ + L PDLQ Sbjct: 74 RPGTFEGWLHRITTNLFLDMVRRRNKIRMEALPEEYDRVPADTPDPQQVFDATNLDPDLQ 133 Query: 192 AALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 244 ALDSL PEFRAAVVLCDIEGLSYEEI TLGVKLGTVRSRIHRGRQ +RD L Sbjct: 134 RALDSLAPEFRAAVVLCDIEGLSYEEIATTLGVKLGTVRSRIHRGRQTIRDAL 186 >tr|C2ARI5|C2ARI5_TSUPA Tax_Id=521096 SubName: Full=RNA polymerase, sigma 29 subunit, SigE;[Tsukamurella paurometabola DSM 20162] Length = 215 Score = 280 bits (715), Expect = 1e-73 Identities = 134/173 (77%), Positives = 155/173 (89%) Query: 72 GTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNY 131 GTA FDATGD++ MPSW+ELVR+HA RVY LAYRLSGN DAEDLTQ+TFIRVFRS+Q+Y Sbjct: 30 GTAAFDATGDRSDMPSWDELVREHADRVYRLAYRLSGNAQDAEDLTQDTFIRVFRSLQSY 89 Query: 132 QPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQ 191 +PGTFEGWLHRITTNLFLDMVRRR RIRM+ALP+DY+RVP+ +P+P QIY D+ L P LQ Sbjct: 90 EPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYERVPSGDPDPGQIYADANLNPQLQ 149 Query: 192 AALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 244 ALD+L PEFRAAVVL DIEGLSYEE+ ATLGVKLGTVRSRIHRGR+++R+ L Sbjct: 150 VALDALSPEFRAAVVLADIEGLSYEEVAATLGVKLGTVRSRIHRGRKSIREAL 202 >tr|C7MVJ5|C7MVJ5_SACVD Tax_Id=471857 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Saccharomonospora viridis] Length = 197 Score = 268 bits (685), Expect = 4e-70 Identities = 130/179 (72%), Positives = 149/179 (83%) Query: 66 PFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVF 125 P D+ Q V T P+W+E+VRQHA RVY LAYRL+GN HDAEDLTQETFIRVF Sbjct: 7 PHDSTQTAPVLVEDDATWTPPTWDEVVRQHADRVYRLAYRLTGNAHDAEDLTQETFIRVF 66 Query: 126 RSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSR 185 RS+ +Y+PGTFEGWLHRITTNLFLDM RRR+R+RM+ LP+D DR+ D P+PEQ+Y D+ Sbjct: 67 RSLASYKPGTFEGWLHRITTNLFLDMARRRSRVRMEGLPEDTDRLVGDGPSPEQVYSDTH 126 Query: 186 LGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 244 L PDLQAALD LPPEF+AAVVLCD+EGLSYEEIGATLGVKLGTVRSRIHRGRQAL+ L Sbjct: 127 LDPDLQAALDELPPEFKAAVVLCDVEGLSYEEIGATLGVKLGTVRSRIHRGRQALKSSL 185 >tr|C6WL01|C6WL01_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Actinosynnema mirum] Length = 194 Score = 268 bits (685), Expect = 4e-70 Identities = 126/158 (79%), Positives = 145/158 (91%) Query: 84 TMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRI 143 T P+W+E+VR+HA RVY LAYRL+GNQHDAEDLTQETFIRVFRS+ +Y+PGTFEGWLHRI Sbjct: 23 TPPTWDEVVREHADRVYRLAYRLTGNQHDAEDLTQETFIRVFRSLASYKPGTFEGWLHRI 82 Query: 144 TTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQAALDSLPPEFRA 203 TTNLFLDM RRR+R+RM+ LP+D DR+ D+P+PEQ+Y ++ L PDLQAALD LPPEFRA Sbjct: 83 TTNLFLDMARRRSRLRMEGLPEDTDRLAGDDPSPEQVYTETHLDPDLQAALDELPPEFRA 142 Query: 204 AVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR 241 AVVLCD+EGLSYEEIGATLGVKLGTVRSRIHRGRQALR Sbjct: 143 AVVLCDVEGLSYEEIGATLGVKLGTVRSRIHRGRQALR 180 >tr|A4F8J4|A4F8J4_SACEN Tax_Id=405948 SubName: Full=Putative ECF family RNA polymerase sigma factor;[Saccharopolyspora erythraea] Length = 201 Score = 267 bits (683), Expect = 8e-70 Identities = 125/158 (79%), Positives = 144/158 (91%) Query: 84 TMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRI 143 T PSW+E+VRQHA R+Y LAYRL+GNQHDAEDLTQETFIRVFRS+ +Y+PGTFEGWLHRI Sbjct: 29 TPPSWDEVVRQHADRIYRLAYRLTGNQHDAEDLTQETFIRVFRSLASYKPGTFEGWLHRI 88 Query: 144 TTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQAALDSLPPEFRA 203 TTNLFLDM RRRAR+RM+ LP+D DR+P P+PEQ+++D+ L PDLQAALD +PPEFRA Sbjct: 89 TTNLFLDMARRRARLRMEGLPEDTDRLPGGGPSPEQVFNDTHLDPDLQAALDEMPPEFRA 148 Query: 204 AVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR 241 AVVLCD+EGLSYEEIGATLGVKLGTVRSRIHRGRQ L+ Sbjct: 149 AVVLCDVEGLSYEEIGATLGVKLGTVRSRIHRGRQMLK 186 >tr|Q6NHY6|Q6NHY6_CORDI Tax_Id=1717 SubName: Full=Putative ECF family RNA polymerase sigma factor;[Corynebacterium diphtheriae] Length = 239 Score = 258 bits (659), Expect = 5e-67 Identities = 136/204 (66%), Positives = 156/204 (76%), Gaps = 12/204 (5%) Query: 57 PSRDDDWVEP---FDALQGTAVFDA-TGDKATMPSWEELVRQHAARVYWLAYRLSGNQHD 112 PS DD ++ + L GTA FDA GD MPSWEELV QHA VY LA+RLSGNQHD Sbjct: 33 PSTDDVTIDADVATEELTGTAAFDAGVGD---MPSWEELVAQHADSVYRLAFRLSGNQHD 89 Query: 113 AEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPA 172 AEDLTQETF+RVFRS++ YQPGTFEGWLHRITTNLFLDMVR RA+IRM+ALP+DY+RVP Sbjct: 90 AEDLTQETFMRVFRSLKGYQPGTFEGWLHRITTNLFLDMVRHRAKIRMEALPEDYERVPG 149 Query: 173 DEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSR 232 + PEQ Y+ S L P LQ ALD L P+FR AVVLCD+ G+SY+EI TLGVK+GTVRSR Sbjct: 150 TDMTPEQAYNVSNLDPALQKALDDLSPDFRVAVVLCDVVGMSYDEIADTLGVKMGTVRSR 209 Query: 233 IHRGRQALRDYLLTAHPRDGATTD 256 IHRGR LR AH + AT+D Sbjct: 210 IHRGRSQLR-----AHLENQATSD 228 >tr|C8XJ69|C8XJ69_NAKMY Tax_Id=479431 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Nakamurella multipartita] Length = 213 Score = 258 bits (658), Expect = 6e-67 Identities = 127/179 (70%), Positives = 146/179 (81%) Query: 78 ATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFE 137 +TG T P+W+E+VR H RVY LAYRLSGN HDAED+TQETFIRVFRS+ ++QPG+FE Sbjct: 24 STGPVWTPPAWDEIVRDHGDRVYRLAYRLSGNAHDAEDITQETFIRVFRSLASFQPGSFE 83 Query: 138 GWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQAALDSL 197 GWLHRITTN+FLDMVRRR RIRM+ALP++ DR+ EP+PEQ + D+ L PDLQAALD L Sbjct: 84 GWLHRITTNVFLDMVRRRQRIRMEALPEETDRIAGREPSPEQAFSDAHLDPDLQAALDDL 143 Query: 198 PPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAHPRDGATTD 256 PEFRAAVVLCD+EGL+YEEIGATLGVKLGTVRSRIHRGR ALR L GA D Sbjct: 144 LPEFRAAVVLCDVEGLTYEEIGATLGVKLGTVRSRIHRGRLALRAGLERRRAARGAAAD 202 >tr|Q8FQE2|Q8FQE2_COREF Tax_Id=152794 SubName: Full=Putative RNA polymerase sigma factor;[Corynebacterium efficiens] Length = 216 Score = 257 bits (656), Expect = 1e-66 Identities = 130/192 (67%), Positives = 150/192 (78%), Gaps = 2/192 (1%) Query: 56 PPSRDDDWVEPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAED 115 P + D VEP + L GTA FDA +A MPSW ELV +HA VY LA+RLSGNQHDAED Sbjct: 13 PAAIDLTPVEPTEELSGTAAFDA--GQAEMPSWGELVAEHADSVYRLAFRLSGNQHDAED 70 Query: 116 LTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEP 175 LTQETF+RVFRS++NYQPGTFEGWLHRITTNLFLDMVR R +IRM+ALP+DY+RVP ++ Sbjct: 71 LTQETFMRVFRSLKNYQPGTFEGWLHRITTNLFLDMVRHRGKIRMEALPEDYERVPGNDM 130 Query: 176 NPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHR 235 PEQ Y + L P LQ ALD L P+FR AV+LCD+ GLSY+EI TLGVK+GTVRSRIHR Sbjct: 131 TPEQAYTVANLDPALQEALDDLSPDFRVAVILCDVVGLSYDEIAETLGVKMGTVRSRIHR 190 Query: 236 GRQALRDYLLTA 247 GR LR L A Sbjct: 191 GRTQLRASLEAA 202 >tr|C8NMR0|C8NMR0_COREF Tax_Id=196164 (sigE)SubName: Full=RNA polymerase sigma-70 factor, ECF subfamily;[Corynebacterium efficiens YS-314] Length = 213 Score = 257 bits (656), Expect = 1e-66 Identities = 130/192 (67%), Positives = 150/192 (78%), Gaps = 2/192 (1%) Query: 56 PPSRDDDWVEPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAED 115 P + D VEP + L GTA FDA +A MPSW ELV +HA VY LA+RLSGNQHDAED Sbjct: 10 PAAIDLTPVEPTEELSGTAAFDA--GQAEMPSWGELVAEHADSVYRLAFRLSGNQHDAED 67 Query: 116 LTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEP 175 LTQETF+RVFRS++NYQPGTFEGWLHRITTNLFLDMVR R +IRM+ALP+DY+RVP ++ Sbjct: 68 LTQETFMRVFRSLKNYQPGTFEGWLHRITTNLFLDMVRHRGKIRMEALPEDYERVPGNDM 127 Query: 176 NPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHR 235 PEQ Y + L P LQ ALD L P+FR AV+LCD+ GLSY+EI TLGVK+GTVRSRIHR Sbjct: 128 TPEQAYTVANLDPALQEALDDLSPDFRVAVILCDVVGLSYDEIAETLGVKMGTVRSRIHR 187 Query: 236 GRQALRDYLLTA 247 GR LR L A Sbjct: 188 GRTQLRASLEAA 199 >tr|C0XQL3|C0XQL3_9CORY Tax_Id=525263 SubName: Full=RNA polymerase sigma factor SigE;[Corynebacterium lipophiloflavum DSM 44291] Length = 200 Score = 256 bits (654), Expect = 2e-66 Identities = 129/194 (66%), Positives = 149/194 (76%), Gaps = 2/194 (1%) Query: 68 DALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRS 127 D L GTA FDA + MPSW ELV +HA VY LA+RLSGNQHDAEDLTQETF+RVFRS Sbjct: 9 DTLTGTAAFDAGAGE--MPSWAELVAEHANSVYRLAFRLSGNQHDAEDLTQETFMRVFRS 66 Query: 128 VQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLG 187 +++YQPGTFEGWLHRITTNLFLDMVR RA+IRM+ALP+DY+RVP + PEQ Y S L Sbjct: 67 LKSYQPGTFEGWLHRITTNLFLDMVRHRAKIRMEALPEDYERVPGTDMTPEQAYSVSNLD 126 Query: 188 PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTA 247 P LQ ALD L P+FR AVVLCD+ G++YEEI ATLGVK+GTVRSRIHRGR LR L T Sbjct: 127 PALQTALDELSPDFRVAVVLCDVVGMTYEEIAATLGVKMGTVRSRIHRGRSQLRRSLETQ 186 Query: 248 HPRDGATTDATHVK 261 D + + V+ Sbjct: 187 AASDESAKELIRVR 200 >tr|C0E7D8|C0E7D8_9CORY Tax_Id=566549 SubName: Full=Putative uncharacterized protein;[Corynebacterium matruchotii ATCC 33806] Length = 217 Score = 255 bits (652), Expect = 3e-66 Identities = 128/189 (67%), Positives = 151/189 (79%), Gaps = 5/189 (2%) Query: 54 HPPPSRDDDWVEPFDALQGTAVFDA-TGDKATMPSWEELVRQHAARVYWLAYRLSGNQHD 112 H +DD +E D LQGTA FDA GD MPSW ++V QHA VY LAYRLSGNQHD Sbjct: 12 HEAFDHEDDTLEGQD-LQGTAAFDAGVGD---MPSWGDIVAQHADSVYRLAYRLSGNQHD 67 Query: 113 AEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPA 172 AEDLTQETF+RVFRS++NYQPGTFEGWLHRITTNLFLDMVR R++I M++LP+DY+RVP Sbjct: 68 AEDLTQETFMRVFRSIKNYQPGTFEGWLHRITTNLFLDMVRHRSKISMESLPEDYERVPG 127 Query: 173 DEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSR 232 + PEQ+Y ++ L P LQ ALDSL P+F+ AVVLCD+ G+SY+EI TLGVK+GTVRSR Sbjct: 128 TDMTPEQVYTEANLDPALQEALDSLAPDFKVAVVLCDVVGMSYDEIADTLGVKMGTVRSR 187 Query: 233 IHRGRQALR 241 IHRGR LR Sbjct: 188 IHRGRSQLR 196 >tr|C0U796|C0U796_9ACTO Tax_Id=526225 SubName: Full=RNA polymerase, sigma subunit, ECF family;[Geodermatophilus obscurus DSM 43160] Length = 196 Score = 255 bits (651), Expect = 4e-66 Identities = 123/170 (72%), Positives = 142/170 (83%) Query: 86 PSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITT 145 P+WE++VR H+ARVY LAYRLSGN DAEDLTQETF+RVFRS+ ++ PGTFEGWLHRITT Sbjct: 17 PTWEQVVRDHSARVYRLAYRLSGNPQDAEDLTQETFVRVFRSLADFSPGTFEGWLHRITT 76 Query: 146 NLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAV 205 NLFLDMVRRR RIR DALP+D +R+P P+PEQ+Y D+ L P +QAALD+L PEFR AV Sbjct: 77 NLFLDMVRRRQRIRFDALPEDTERLPGTAPSPEQVYSDTHLDPQVQAALDALSPEFRVAV 136 Query: 206 VLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAHPRDGATT 255 VLCDIEGL+YEEI ATLG+KLGTVRSRIHRGR LR+ L PR ATT Sbjct: 137 VLCDIEGLTYEEIAATLGIKLGTVRSRIHRGRVQLREALAHLAPRRPATT 186 >tr|Q8NRD2|Q8NRD2_CORGL Tax_Id=1718 SubName: Full=DNA-directed RNA polymerase specialized sigma subunits, sigma24 homologs;[Corynebacterium glutamicum] Length = 213 Score = 253 bits (646), Expect = 1e-65 Identities = 130/197 (65%), Positives = 152/197 (77%), Gaps = 9/197 (4%) Query: 58 SRDDDWV-------EPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQ 110 SRDD V E + L GTA FDA +A MP+W ELV +HA VY LAYRLSGNQ Sbjct: 5 SRDDAPVVIETVQAEHAEELTGTAAFDA--GQADMPTWGELVAEHADSVYRLAYRLSGNQ 62 Query: 111 HDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRV 170 HDAEDLTQETF+RVFRS+++YQPGTFEGWLHRITTNLFLDMVR R +IRM+ALP+DY+RV Sbjct: 63 HDAEDLTQETFMRVFRSLKSYQPGTFEGWLHRITTNLFLDMVRHRGKIRMEALPEDYERV 122 Query: 171 PADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVR 230 P ++ PEQ Y ++ L P LQAALD L P+FR AV+LCD+ G+SY+EI TLGVK+GTVR Sbjct: 123 PGNDITPEQAYTEANLDPALQAALDELSPDFRVAVILCDVVGMSYDEIAETLGVKMGTVR 182 Query: 231 SRIHRGRQALRDYLLTA 247 SRIHRGR LR L A Sbjct: 183 SRIHRGRSQLRASLEAA 199 >tr|A4QD85|A4QD85_CORGB Tax_Id=340322 SubName: Full=Putative uncharacterized protein;[Corynebacterium glutamicum] Length = 213 Score = 253 bits (646), Expect = 1e-65 Identities = 130/197 (65%), Positives = 152/197 (77%), Gaps = 9/197 (4%) Query: 58 SRDDDWV-------EPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQ 110 SRDD V E + L GTA FDA +A MP+W ELV +HA VY LAYRLSGNQ Sbjct: 5 SRDDAPVVIETVQAEHAEELTGTAAFDA--GQADMPTWGELVAEHADSVYRLAYRLSGNQ 62 Query: 111 HDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRV 170 HDAEDLTQETF+RVFRS+++YQPGTFEGWLHRITTNLFLDMVR R +IRM+ALP+DY+RV Sbjct: 63 HDAEDLTQETFMRVFRSLKSYQPGTFEGWLHRITTNLFLDMVRHRGKIRMEALPEDYERV 122 Query: 171 PADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVR 230 P ++ PEQ Y ++ L P LQAALD L P+FR AV+LCD+ G+SY+EI TLGVK+GTVR Sbjct: 123 PGNDITPEQAYTEANLDPALQAALDELSPDFRVAVILCDVVGMSYDEIAETLGVKMGTVR 182 Query: 231 SRIHRGRQALRDYLLTA 247 SRIHRGR LR L A Sbjct: 183 SRIHRGRSQLRASLEAA 199 >tr|Q6M649|Q6M649_CORGL Tax_Id=1718 (sigE)SubName: Full=PUTATIVE RNA POLYMERASE SIGMA FACTOR, ECF family;[Corynebacterium glutamicum] Length = 216 Score = 253 bits (646), Expect = 1e-65 Identities = 130/197 (65%), Positives = 152/197 (77%), Gaps = 9/197 (4%) Query: 58 SRDDDWV-------EPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQ 110 SRDD V E + L GTA FDA +A MP+W ELV +HA VY LAYRLSGNQ Sbjct: 8 SRDDAPVVIETVQAEHAEELTGTAAFDA--GQADMPTWGELVAEHADSVYRLAYRLSGNQ 65 Query: 111 HDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRV 170 HDAEDLTQETF+RVFRS+++YQPGTFEGWLHRITTNLFLDMVR R +IRM+ALP+DY+RV Sbjct: 66 HDAEDLTQETFMRVFRSLKSYQPGTFEGWLHRITTNLFLDMVRHRGKIRMEALPEDYERV 125 Query: 171 PADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVR 230 P ++ PEQ Y ++ L P LQAALD L P+FR AV+LCD+ G+SY+EI TLGVK+GTVR Sbjct: 126 PGNDITPEQAYTEANLDPALQAALDELSPDFRVAVILCDVVGMSYDEIAETLGVKMGTVR 185 Query: 231 SRIHRGRQALRDYLLTA 247 SRIHRGR LR L A Sbjct: 186 SRIHRGRSQLRASLEAA 202 >tr|C5VDT3|C5VDT3_9CORY Tax_Id=553207 SubName: Full=RNA polymerase sigma factor SigE;[Corynebacterium matruchotii ATCC 14266] Length = 196 Score = 252 bits (643), Expect = 3e-65 Identities = 123/173 (71%), Positives = 144/173 (83%), Gaps = 4/173 (2%) Query: 70 LQGTAVFDA-TGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSV 128 LQGTA FDA GD MPSW ++V QHA VY LAYRLSGNQHDAEDLTQETF+RVFRS+ Sbjct: 6 LQGTAAFDAGVGD---MPSWGDIVAQHADSVYRLAYRLSGNQHDAEDLTQETFMRVFRSI 62 Query: 129 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGP 188 +NYQPGTFEGWLHRITTNLFLDMVR R++I M++LP+DY+RVP + PEQ+Y ++ L P Sbjct: 63 KNYQPGTFEGWLHRITTNLFLDMVRHRSKISMESLPEDYERVPGTDMTPEQVYTEANLDP 122 Query: 189 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR 241 LQ ALDSL P+F+ AVVLCD+ G+SY+EI TLGVK+GTVRSRIHRGR LR Sbjct: 123 ALQEALDSLAPDFKVAVVLCDVMGMSYDEIADTLGVKMGTVRSRIHRGRSQLR 175 >tr|Q9FBL1|Q9FBL1_STRCO Tax_Id=1902 SubName: Full=Putative ECF-subfamily sigma factor;[Streptomyces coelicolor] Length = 223 Score = 250 bits (639), Expect = 1e-64 Identities = 126/181 (69%), Positives = 143/181 (79%), Gaps = 3/181 (1%) Query: 73 TAVF--DATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQN 130 TA F DA G T P+WEE+V H+ RVY LAYRL+GNQHDAEDLTQE F+RVFRS+ Sbjct: 21 TATFSSDADGQAWTPPTWEEIVSTHSGRVYRLAYRLTGNQHDAEDLTQEVFVRVFRSLST 80 Query: 131 YQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDD-YDRVPADEPNPEQIYHDSRLGPD 189 Y PGTFEGWLHRITTNLFLDMVRR+ RIR DAL DD +R+P+ EP P+Q++HD+ D Sbjct: 81 YTPGTFEGWLHRITTNLFLDMVRRKQRIRFDALGDDAAERLPSREPTPQQLFHDAHFDAD 140 Query: 190 LQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAHP 249 +Q ALD+L PEFRAAVVLCDIEGLSYEEI ATLGVKLGTVRSRIHRGR LR L P Sbjct: 141 VQQALDTLAPEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIHRGRSQLRKALAHRSP 200 Query: 250 R 250 + Sbjct: 201 K 201 >tr|B4V167|B4V167_9ACTO Tax_Id=465541 SubName: Full=RNA polymerase sigma-70 factor;[Streptomyces sp. Mg1] Length = 220 Score = 249 bits (635), Expect = 3e-64 Identities = 126/183 (68%), Positives = 142/183 (77%), Gaps = 1/183 (0%) Query: 69 ALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSV 128 A T DA T PSWEE+V H+ARVY LAYRL+GNQHDAEDLTQE F+RVFRS+ Sbjct: 13 ATTATFATDAGSQAWTPPSWEEIVSTHSARVYRLAYRLTGNQHDAEDLTQEVFVRVFRSL 72 Query: 129 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDD-YDRVPADEPNPEQIYHDSRLG 187 Y PGTFEGWLHRITTNLFLDMVRR+ RIR DAL DD +R+P+ EP+P+Q+ HD+ Sbjct: 73 STYTPGTFEGWLHRITTNLFLDMVRRKQRIRFDALGDDAAERLPSREPSPQQVLHDTHFD 132 Query: 188 PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTA 247 D+Q ALD+L PEFRAAVVLCDIEGLSYEEI ATLGVKLGTVRSRIHRGR LR L Sbjct: 133 ADVQQALDTLAPEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIHRGRSHLRKALKHR 192 Query: 248 HPR 250 P+ Sbjct: 193 SPQ 195 >tr|C0WFJ4|C0WFJ4_9CORY Tax_Id=525260 SubName: Full=ECF family DNA-directed RNA polymerase sigma subunit SigW;[Corynebacterium accolens ATCC 49725] Length = 209 Score = 248 bits (632), Expect = 6e-64 Identities = 124/177 (70%), Positives = 143/177 (80%), Gaps = 2/177 (1%) Query: 65 EPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRV 124 +P L GTA FDA +ATMPSW ELV +HA VY LAYRLSG+Q DAEDLTQETF+RV Sbjct: 15 DPNVELTGTAAFDA--GEATMPSWAELVAEHADGVYRLAYRLSGDQQDAEDLTQETFMRV 72 Query: 125 FRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDS 184 FRS+ YQPGTF GWLHRITTNLFLDMVR R++IRM++LP+DY+RVP + PEQ Y + Sbjct: 73 FRSLDKYQPGTFGGWLHRITTNLFLDMVRHRSKIRMESLPEDYERVPGTDMTPEQAYTVA 132 Query: 185 RLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR 241 L P LQ+ALDSL P+FR AVVLCDIEG+SY+EI TLGVK+GTVRSRIHRGR LR Sbjct: 133 NLDPVLQSALDSLAPDFRVAVVLCDIEGMSYDEIAETLGVKMGTVRSRIHRGRSQLR 189 >tr|B5HA10|B5HA10_STRPR Tax_Id=457429 SubName: Full=RNA polymerase sigma factor SigE;[Streptomyces pristinaespiralis ATCC 25486] Length = 218 Score = 247 bits (630), Expect = 1e-63 Identities = 126/180 (70%), Positives = 143/180 (79%), Gaps = 3/180 (1%) Query: 73 TAVF--DATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQN 130 TA F DA T P+WEE+V H+ARVY LAYRL+GNQHDAEDLTQE F+RVFRS+ Sbjct: 16 TATFASDAESQAWTPPTWEEIVSTHSARVYRLAYRLTGNQHDAEDLTQEVFVRVFRSLST 75 Query: 131 YQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDD-YDRVPADEPNPEQIYHDSRLGPD 189 Y PGTFEGWLHRITTNLFLDMVRR+ RIR DAL DD +R+P+ EP+P+Q+++DS D Sbjct: 76 YTPGTFEGWLHRITTNLFLDMVRRKQRIRFDALGDDAAERLPSREPSPQQVFNDSHFDAD 135 Query: 190 LQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAHP 249 +Q ALD+L PEFRAAVVLCDIEGLSYEEI ATLGVKLGTVRSRIHRGR LR L P Sbjct: 136 VQHALDTLAPEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIHRGRSHLRKALQHRSP 195 Database: Amellifera_nr Posted date: Jan 15, 2010 5:10 AM Number of letters in database: 3,808,957,724 Number of sequences in database: 11,153,314 Lambda K H 0.319 0.136 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11153314 Number of Hits to DB: 2,148,394,979 Number of extensions: 93013803 Number of successful extensions: 219656 Number of sequences better than 10.0: 9641 Number of HSP's gapped: 213654 Number of HSP's successfully gapped: 9645 Length of query: 263 Length of database: 3,808,957,724 Length adjustment: 135 Effective length of query: 128 Effective length of database: 2,303,260,334 Effective search space: 294817322752 Effective search space used: 294817322752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 79 (35.0 bits)