BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ML1132 (610 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,153,314 sequences; 3,808,957,724 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P45835|RHO_MYCLE Tax_Id=1769 (rho)RecName: Full=Transcription... 1048 0.0 tr|B8ZR29|B8ZR29_MYCLB Tax_Id=561304 (rho)SubName: Full=Transcri... 1047 0.0 sp|P66028|RHO_MYCTU Tax_Id=1773 (rho)RecName: Full=Transcription... 850 0.0 sp|P66029|RHO_MYCBO Tax_Id=1765 (rho)RecName: Full=Transcription... 850 0.0 tr|C6DU73|C6DU73_MYCTK Tax_Id=478434 SubName: Full=Transcription... 850 0.0 tr|C1AMU1|C1AMU1_MYCBT Tax_Id=561275 (rho)SubName: Full=Transcri... 850 0.0 tr|A5U1Z6|A5U1Z6_MYCTA Tax_Id=419947 (rho)SubName: Full=Transcri... 850 0.0 tr|A1KI85|A1KI85_MYCBP Tax_Id=410289 (rho)SubName: Full=Probable... 850 0.0 tr|A5WLX8|A5WLX8_MYCTF Tax_Id=336982 SubName: Full=Transcription... 850 0.0 tr|A4KGL8|A4KGL8_MYCTU Tax_Id=395095 SubName: Full=Transcription... 850 0.0 tr|A2VHJ3|A2VHJ3_MYCTU Tax_Id=348776 SubName: Full=Transcription... 850 0.0 tr|B2HQL5|B2HQL5_MYCMM Tax_Id=216594 (rho)SubName: Full=Transcri... 828 0.0 tr|Q73X46|Q73X46_MYCPA Tax_Id=1770 (rho)SubName: Full=Rho;[Mycob... 826 0.0 tr|A0PUL3|A0PUL3_MYCUA Tax_Id=362242 (rho)SubName: Full=Transcri... 823 0.0 tr|A0QCW4|A0QCW4_MYCA1 Tax_Id=243243 (rho)SubName: Full=Transcri... 798 0.0 tr|Q1B536|Q1B536_MYCSS Tax_Id=164756 SubName: Full=Transcription... 715 0.0 tr|A3Q3C8|A3Q3C8_MYCSJ Tax_Id=164757 SubName: Full=Transcription... 715 0.0 tr|A1UK01|A1UK01_MYCSK Tax_Id=189918 SubName: Full=Transcription... 715 0.0 tr|A0R218|A0R218_MYCS2 Tax_Id=246196 (rho)SubName: Full=Transcri... 714 0.0 tr|A1TD72|A1TD72_MYCVP Tax_Id=350058 SubName: Full=Transcription... 709 0.0 tr|A4T8L9|A4T8L9_MYCGI Tax_Id=350054 SubName: Full=Transcription... 691 0.0 tr|B1MLU7|B1MLU7_MYCA9 Tax_Id=561007 SubName: Full=Probable tran... 686 0.0 tr|Q5Z0Z4|Q5Z0Z4_NOCFA Tax_Id=37329 (rho)SubName: Full=Putative ... 686 0.0 tr|Q0SGN6|Q0SGN6_RHOSR Tax_Id=101510 SubName: Full=Transcription... 679 0.0 tr|D0L9H1|D0L9H1_9ACTO Tax_Id=526226 SubName: Full=Transcription... 678 0.0 tr|C1AW12|C1AW12_RHOOB Tax_Id=632772 (rho)SubName: Full=Transcri... 677 0.0 tr|C1A1Z2|C1A1Z2_RHOE4 Tax_Id=234621 (rho)SubName: Full=Transcri... 664 0.0 tr|C3JI49|C3JI49_RHOER Tax_Id=596309 (rho)SubName: Full=Transcri... 664 0.0 tr|C7MX54|C7MX54_SACVD Tax_Id=471857 SubName: Full=Transcription... 639 0.0 tr|C2AS02|C2AS02_TSUPA Tax_Id=521096 SubName: Full=Transcription... 622 e-176 tr|C6WHL1|C6WHL1_ACTMD Tax_Id=446462 SubName: Full=Transcription... 619 e-175 tr|A4FN42|A4FN42_SACEN Tax_Id=405948 (rho1)SubName: Full=Putativ... 605 e-171 tr|C4LJM6|C4LJM6_CORK4 Tax_Id=645127 SubName: Full=Transcription... 601 e-170 tr|C8XIA7|C8XIA7_NAKMY Tax_Id=479431 SubName: Full=Transcription... 599 e-169 tr|A4XAX8|A4XAX8_SALTO Tax_Id=369723 SubName: Full=Transcription... 597 e-168 tr|A8L3U9|A8L3U9_FRASN Tax_Id=298653 SubName: Full=Transcription... 595 e-168 tr|A8M2K9|A8M2K9_SALAI Tax_Id=391037 SubName: Full=Transcription... 593 e-167 tr|Q2J6L8|Q2J6L8_FRASC Tax_Id=106370 SubName: Full=Transcription... 592 e-167 tr|C4RQ92|C4RQ92_9ACTO Tax_Id=219305 SubName: Full=Transcription... 592 e-167 tr|Q6NHU1|Q6NHU1_CORDI Tax_Id=1717 (rho)SubName: Full=Transcript... 592 e-167 tr|C0UBY4|C0UBY4_9ACTO Tax_Id=526225 SubName: Full=Transcription... 589 e-166 tr|Q0RD98|Q0RD98_FRAAA Tax_Id=326424 (rho)SubName: Full=Transcri... 586 e-165 tr|Q47M68|Q47M68_THEFY Tax_Id=269800 SubName: Full=Transcription... 581 e-163 tr|Q8FQ32|Q8FQ32_COREF Tax_Id=152794 SubName: Full=Putative tran... 580 e-163 tr|C8NKZ7|C8NKZ7_COREF Tax_Id=196164 (rho)SubName: Full=Transcri... 580 e-163 tr|C4DMQ6|C4DMQ6_9ACTO Tax_Id=446470 SubName: Full=Transcription... 577 e-162 tr|B5HMS3|B5HMS3_9ACTO Tax_Id=463191 SubName: Full=Transcription... 576 e-162 tr|C5VE12|C5VE12_9CORY Tax_Id=553207 (rho)SubName: Full=Transcri... 576 e-162 tr|A4QDG0|A4QDG0_CORGB Tax_Id=340322 SubName: Full=Putative unch... 574 e-161 tr|Q8NR58|Q8NR58_CORGL Tax_Id=1718 (rho)SubName: Full=Transcript... 573 e-161 >sp|P45835|RHO_MYCLE Tax_Id=1769 (rho)RecName: Full=Transcription termination factor rho; EC=3.6.1.-; AltName: Full=ATP-dependent helicase rho;[Mycobacterium leprae] Length = 610 Score = 1048 bits (2711), Expect = 0.0 Identities = 550/610 (90%), Positives = 551/610 (90%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +TETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG Sbjct: 1 MTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 Query: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNYAIXXXXX 120 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNYAI Sbjct: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNYAIVEVSR 120 Query: 121 XXXXXXXXXXDVXXXXXXXXXXXXDCQGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVE 180 DV DCQGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVE Sbjct: 121 RERRGASREADVTAGTSTAEATESDCQGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVE 180 Query: 181 QQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAELRQDDVVQPVAGILDV 240 QQSSSLQP AEAELRQDDVVQPVAGILDV Sbjct: 181 QQSSSLQPRGDDDGEGRQGRRGRRFRDRDRRRRGERSGDGAEAELRQDDVVQPVAGILDV 240 Query: 241 LDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLV 300 LDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLV Sbjct: 241 LDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLV 300 Query: 301 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIV 360 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIV Sbjct: 301 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIV 360 Query: 361 SPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 420 SPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS Sbjct: 361 SPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 420 Query: 421 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 480 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP Sbjct: 421 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 480 Query: 481 KRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPA 540 KRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPA Sbjct: 481 KRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPA 540 Query: 541 VDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVS 600 VDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVS Sbjct: 541 VDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVS 600 Query: 601 KTTPGSMDDD 610 KTTPGSMDDD Sbjct: 601 KTTPGSMDDD 610 >tr|B8ZR29|B8ZR29_MYCLB Tax_Id=561304 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium leprae] Length = 610 Score = 1047 bits (2708), Expect = 0.0 Identities = 549/610 (90%), Positives = 551/610 (90%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +TETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG Sbjct: 1 MTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 Query: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNYAIXXXXX 120 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNYAI Sbjct: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNYAIVEVSR 120 Query: 121 XXXXXXXXXXDVXXXXXXXXXXXXDCQGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVE 180 DV DCQGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVE Sbjct: 121 RERRGASREADVTAGTSTAEATESDCQGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVE 180 Query: 181 QQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAELRQDDVVQPVAGILDV 240 QQSSSLQP AEAELR+DDVVQPVAGILDV Sbjct: 181 QQSSSLQPRGDDDGEGRQGRRGRRFRDRDRRRRGERSGDGAEAELREDDVVQPVAGILDV 240 Query: 241 LDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLV 300 LDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLV Sbjct: 241 LDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLV 300 Query: 301 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIV 360 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIV Sbjct: 301 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIV 360 Query: 361 SPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 420 SPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS Sbjct: 361 SPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 420 Query: 421 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 480 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP Sbjct: 421 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 480 Query: 481 KRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPA 540 KRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPA Sbjct: 481 KRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPA 540 Query: 541 VDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVS 600 VDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVS Sbjct: 541 VDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVS 600 Query: 601 KTTPGSMDDD 610 KTTPGSMDDD Sbjct: 601 KTTPGSMDDD 610 >sp|P66028|RHO_MYCTU Tax_Id=1773 (rho)RecName: Full=Transcription termination factor rho; EC=3.6.1.-; AltName: Full=ATP-dependent helicase rho;[Mycobacterium tuberculosis] Length = 602 Score = 850 bits (2196), Expect = 0.0 Identities = 465/610 (76%), Positives = 488/610 (80%), Gaps = 8/610 (1%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +T+TDLIT GE+TD ++A TD PD+ A GSL+TMVLPELRALAN+AGVKG Sbjct: 1 MTDTDLITAGESTDGKP-SDAAATDPPDLNADEPA---GSLATMVLPELRALANRAGVKG 56 Query: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNYAIXXXXX 120 TSGMRK+ELIAAIEE R QANG D +++H S+EA A Q EQ Sbjct: 57 TSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQ 116 Query: 121 XXXXXXXXXXDVXXXXXXXXXXXXDCQGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVE 180 + GTA DDT QGGQ D KTEERG D G DQG + Sbjct: 117 SQQVRPERRSATREAGPSGSG---ERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGD 173 Query: 181 QQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAELRQDDVVQPVAGILDV 240 QQ+S Q AEAELR+DDVVQPVAGILDV Sbjct: 174 QQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDG-AEAELREDDVVQPVAGILDV 232 Query: 241 LDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLV 300 LDNYAFVRTSGYL GPHDVYVSM+MVRKNG+RRGDAVTGAVRVP+EGEQ +QRQKFNPLV Sbjct: 233 LDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLV 292 Query: 301 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIV 360 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLET+ +RLTTRVIDLIMPIGKGQRALIV Sbjct: 293 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIV 352 Query: 361 SPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 420 SPPKAGKTTILQDIANAITRNN ECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS Sbjct: 353 SPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 412 Query: 421 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 480 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP Sbjct: 413 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 472 Query: 481 KRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPA 540 KRFLGAARNIEEGGSLTIIATAMVETGSTGD VIFEEFKGTGNAELKLDRKIAERRVFPA Sbjct: 473 KRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPA 532 Query: 541 VDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVS 600 VDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLLMSQLRKTK NYEFLVQVS Sbjct: 533 VDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVS 592 Query: 601 KTTPGSMDDD 610 KTTPGSMD D Sbjct: 593 KTTPGSMDSD 602 >sp|P66029|RHO_MYCBO Tax_Id=1765 (rho)RecName: Full=Transcription termination factor rho; EC=3.6.1.-; AltName: Full=ATP-dependent helicase rho;[Mycobacterium bovis] Length = 602 Score = 850 bits (2196), Expect = 0.0 Identities = 465/610 (76%), Positives = 488/610 (80%), Gaps = 8/610 (1%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +T+TDLIT GE+TD ++A TD PD+ A GSL+TMVLPELRALAN+AGVKG Sbjct: 1 MTDTDLITAGESTDGKP-SDAAATDPPDLNADEPA---GSLATMVLPELRALANRAGVKG 56 Query: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNYAIXXXXX 120 TSGMRK+ELIAAIEE R QANG D +++H S+EA A Q EQ Sbjct: 57 TSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQ 116 Query: 121 XXXXXXXXXXDVXXXXXXXXXXXXDCQGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVE 180 + GTA DDT QGGQ D KTEERG D G DQG + Sbjct: 117 SQQVRPERRSATREAGPSGSG---ERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGD 173 Query: 181 QQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAELRQDDVVQPVAGILDV 240 QQ+S Q AEAELR+DDVVQPVAGILDV Sbjct: 174 QQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDG-AEAELREDDVVQPVAGILDV 232 Query: 241 LDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLV 300 LDNYAFVRTSGYL GPHDVYVSM+MVRKNG+RRGDAVTGAVRVP+EGEQ +QRQKFNPLV Sbjct: 233 LDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLV 292 Query: 301 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIV 360 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLET+ +RLTTRVIDLIMPIGKGQRALIV Sbjct: 293 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIV 352 Query: 361 SPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 420 SPPKAGKTTILQDIANAITRNN ECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS Sbjct: 353 SPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 412 Query: 421 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 480 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP Sbjct: 413 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 472 Query: 481 KRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPA 540 KRFLGAARNIEEGGSLTIIATAMVETGSTGD VIFEEFKGTGNAELKLDRKIAERRVFPA Sbjct: 473 KRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPA 532 Query: 541 VDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVS 600 VDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLLMSQLRKTK NYEFLVQVS Sbjct: 533 VDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVS 592 Query: 601 KTTPGSMDDD 610 KTTPGSMD D Sbjct: 593 KTTPGSMDSD 602 >tr|C6DU73|C6DU73_MYCTK Tax_Id=478434 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis] Length = 602 Score = 850 bits (2196), Expect = 0.0 Identities = 465/610 (76%), Positives = 488/610 (80%), Gaps = 8/610 (1%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +T+TDLIT GE+TD ++A TD PD+ A GSL+TMVLPELRALAN+AGVKG Sbjct: 1 MTDTDLITAGESTDGKP-SDAAATDPPDLNADEPA---GSLATMVLPELRALANRAGVKG 56 Query: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNYAIXXXXX 120 TSGMRK+ELIAAIEE R QANG D +++H S+EA A Q EQ Sbjct: 57 TSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQ 116 Query: 121 XXXXXXXXXXDVXXXXXXXXXXXXDCQGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVE 180 + GTA DDT QGGQ D KTEERG D G DQG + Sbjct: 117 SQQVRPERRSATREAGPSGSG---ERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGD 173 Query: 181 QQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAELRQDDVVQPVAGILDV 240 QQ+S Q AEAELR+DDVVQPVAGILDV Sbjct: 174 QQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDG-AEAELREDDVVQPVAGILDV 232 Query: 241 LDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLV 300 LDNYAFVRTSGYL GPHDVYVSM+MVRKNG+RRGDAVTGAVRVP+EGEQ +QRQKFNPLV Sbjct: 233 LDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLV 292 Query: 301 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIV 360 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLET+ +RLTTRVIDLIMPIGKGQRALIV Sbjct: 293 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIV 352 Query: 361 SPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 420 SPPKAGKTTILQDIANAITRNN ECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS Sbjct: 353 SPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 412 Query: 421 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 480 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP Sbjct: 413 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 472 Query: 481 KRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPA 540 KRFLGAARNIEEGGSLTIIATAMVETGSTGD VIFEEFKGTGNAELKLDRKIAERRVFPA Sbjct: 473 KRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPA 532 Query: 541 VDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVS 600 VDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLLMSQLRKTK NYEFLVQVS Sbjct: 533 VDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVS 592 Query: 601 KTTPGSMDDD 610 KTTPGSMD D Sbjct: 593 KTTPGSMDSD 602 >tr|C1AMU1|C1AMU1_MYCBT Tax_Id=561275 (rho)SubName: Full=Transcription termination factor;[Mycobacterium bovis] Length = 602 Score = 850 bits (2196), Expect = 0.0 Identities = 465/610 (76%), Positives = 488/610 (80%), Gaps = 8/610 (1%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +T+TDLIT GE+TD ++A TD PD+ A GSL+TMVLPELRALAN+AGVKG Sbjct: 1 MTDTDLITAGESTDGKP-SDAAATDPPDLNADEPA---GSLATMVLPELRALANRAGVKG 56 Query: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNYAIXXXXX 120 TSGMRK+ELIAAIEE R QANG D +++H S+EA A Q EQ Sbjct: 57 TSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQ 116 Query: 121 XXXXXXXXXXDVXXXXXXXXXXXXDCQGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVE 180 + GTA DDT QGGQ D KTEERG D G DQG + Sbjct: 117 SQQVRPERRSATREAGPSGSG---ERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGD 173 Query: 181 QQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAELRQDDVVQPVAGILDV 240 QQ+S Q AEAELR+DDVVQPVAGILDV Sbjct: 174 QQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDG-AEAELREDDVVQPVAGILDV 232 Query: 241 LDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLV 300 LDNYAFVRTSGYL GPHDVYVSM+MVRKNG+RRGDAVTGAVRVP+EGEQ +QRQKFNPLV Sbjct: 233 LDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLV 292 Query: 301 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIV 360 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLET+ +RLTTRVIDLIMPIGKGQRALIV Sbjct: 293 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIV 352 Query: 361 SPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 420 SPPKAGKTTILQDIANAITRNN ECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS Sbjct: 353 SPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 412 Query: 421 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 480 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP Sbjct: 413 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 472 Query: 481 KRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPA 540 KRFLGAARNIEEGGSLTIIATAMVETGSTGD VIFEEFKGTGNAELKLDRKIAERRVFPA Sbjct: 473 KRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPA 532 Query: 541 VDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVS 600 VDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLLMSQLRKTK NYEFLVQVS Sbjct: 533 VDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVS 592 Query: 601 KTTPGSMDDD 610 KTTPGSMD D Sbjct: 593 KTTPGSMDSD 602 >tr|A5U1Z6|A5U1Z6_MYCTA Tax_Id=419947 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium tuberculosis] Length = 602 Score = 850 bits (2196), Expect = 0.0 Identities = 465/610 (76%), Positives = 488/610 (80%), Gaps = 8/610 (1%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +T+TDLIT GE+TD ++A TD PD+ A GSL+TMVLPELRALAN+AGVKG Sbjct: 1 MTDTDLITAGESTDGKP-SDAAATDPPDLNADEPA---GSLATMVLPELRALANRAGVKG 56 Query: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNYAIXXXXX 120 TSGMRK+ELIAAIEE R QANG D +++H S+EA A Q EQ Sbjct: 57 TSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQ 116 Query: 121 XXXXXXXXXXDVXXXXXXXXXXXXDCQGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVE 180 + GTA DDT QGGQ D KTEERG D G DQG + Sbjct: 117 SQQVRPERRSATREAGPSGSG---ERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGD 173 Query: 181 QQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAELRQDDVVQPVAGILDV 240 QQ+S Q AEAELR+DDVVQPVAGILDV Sbjct: 174 QQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDG-AEAELREDDVVQPVAGILDV 232 Query: 241 LDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLV 300 LDNYAFVRTSGYL GPHDVYVSM+MVRKNG+RRGDAVTGAVRVP+EGEQ +QRQKFNPLV Sbjct: 233 LDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLV 292 Query: 301 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIV 360 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLET+ +RLTTRVIDLIMPIGKGQRALIV Sbjct: 293 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIV 352 Query: 361 SPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 420 SPPKAGKTTILQDIANAITRNN ECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS Sbjct: 353 SPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 412 Query: 421 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 480 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP Sbjct: 413 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 472 Query: 481 KRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPA 540 KRFLGAARNIEEGGSLTIIATAMVETGSTGD VIFEEFKGTGNAELKLDRKIAERRVFPA Sbjct: 473 KRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPA 532 Query: 541 VDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVS 600 VDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLLMSQLRKTK NYEFLVQVS Sbjct: 533 VDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVS 592 Query: 601 KTTPGSMDDD 610 KTTPGSMD D Sbjct: 593 KTTPGSMDSD 602 >tr|A1KI85|A1KI85_MYCBP Tax_Id=410289 (rho)SubName: Full=Probable transcription termination factor rho homolog;[Mycobacterium bovis] Length = 602 Score = 850 bits (2196), Expect = 0.0 Identities = 465/610 (76%), Positives = 488/610 (80%), Gaps = 8/610 (1%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +T+TDLIT GE+TD ++A TD PD+ A GSL+TMVLPELRALAN+AGVKG Sbjct: 1 MTDTDLITAGESTDGKP-SDAAATDPPDLNADEPA---GSLATMVLPELRALANRAGVKG 56 Query: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNYAIXXXXX 120 TSGMRK+ELIAAIEE R QANG D +++H S+EA A Q EQ Sbjct: 57 TSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQ 116 Query: 121 XXXXXXXXXXDVXXXXXXXXXXXXDCQGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVE 180 + GTA DDT QGGQ D KTEERG D G DQG + Sbjct: 117 SQQVRPERRSATREAGPSGSG---ERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGD 173 Query: 181 QQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAELRQDDVVQPVAGILDV 240 QQ+S Q AEAELR+DDVVQPVAGILDV Sbjct: 174 QQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDG-AEAELREDDVVQPVAGILDV 232 Query: 241 LDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLV 300 LDNYAFVRTSGYL GPHDVYVSM+MVRKNG+RRGDAVTGAVRVP+EGEQ +QRQKFNPLV Sbjct: 233 LDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLV 292 Query: 301 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIV 360 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLET+ +RLTTRVIDLIMPIGKGQRALIV Sbjct: 293 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIV 352 Query: 361 SPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 420 SPPKAGKTTILQDIANAITRNN ECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS Sbjct: 353 SPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 412 Query: 421 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 480 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP Sbjct: 413 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 472 Query: 481 KRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPA 540 KRFLGAARNIEEGGSLTIIATAMVETGSTGD VIFEEFKGTGNAELKLDRKIAERRVFPA Sbjct: 473 KRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPA 532 Query: 541 VDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVS 600 VDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLLMSQLRKTK NYEFLVQVS Sbjct: 533 VDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVS 592 Query: 601 KTTPGSMDDD 610 KTTPGSMD D Sbjct: 593 KTTPGSMDSD 602 >tr|A5WLX8|A5WLX8_MYCTF Tax_Id=336982 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis] Length = 602 Score = 850 bits (2196), Expect = 0.0 Identities = 465/610 (76%), Positives = 488/610 (80%), Gaps = 8/610 (1%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +T+TDLIT GE+TD ++A TD PD+ A GSL+TMVLPELRALAN+AGVKG Sbjct: 1 MTDTDLITAGESTDGKP-SDAAATDPPDLNADEPA---GSLATMVLPELRALANRAGVKG 56 Query: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNYAIXXXXX 120 TSGMRK+ELIAAIEE R QANG D +++H S+EA A Q EQ Sbjct: 57 TSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQ 116 Query: 121 XXXXXXXXXXDVXXXXXXXXXXXXDCQGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVE 180 + GTA DDT QGGQ D KTEERG D G DQG + Sbjct: 117 SQQVRPERRSATREAGPSGSG---ERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGD 173 Query: 181 QQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAELRQDDVVQPVAGILDV 240 QQ+S Q AEAELR+DDVVQPVAGILDV Sbjct: 174 QQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDG-AEAELREDDVVQPVAGILDV 232 Query: 241 LDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLV 300 LDNYAFVRTSGYL GPHDVYVSM+MVRKNG+RRGDAVTGAVRVP+EGEQ +QRQKFNPLV Sbjct: 233 LDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLV 292 Query: 301 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIV 360 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLET+ +RLTTRVIDLIMPIGKGQRALIV Sbjct: 293 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIV 352 Query: 361 SPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 420 SPPKAGKTTILQDIANAITRNN ECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS Sbjct: 353 SPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 412 Query: 421 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 480 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP Sbjct: 413 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 472 Query: 481 KRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPA 540 KRFLGAARNIEEGGSLTIIATAMVETGSTGD VIFEEFKGTGNAELKLDRKIAERRVFPA Sbjct: 473 KRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPA 532 Query: 541 VDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVS 600 VDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLLMSQLRKTK NYEFLVQVS Sbjct: 533 VDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVS 592 Query: 601 KTTPGSMDDD 610 KTTPGSMD D Sbjct: 593 KTTPGSMDSD 602 >tr|A4KGL8|A4KGL8_MYCTU Tax_Id=395095 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis str. Haarlem] Length = 602 Score = 850 bits (2196), Expect = 0.0 Identities = 465/610 (76%), Positives = 488/610 (80%), Gaps = 8/610 (1%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +T+TDLIT GE+TD ++A TD PD+ A GSL+TMVLPELRALAN+AGVKG Sbjct: 1 MTDTDLITAGESTDGKP-SDAAATDPPDLNADEPA---GSLATMVLPELRALANRAGVKG 56 Query: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNYAIXXXXX 120 TSGMRK+ELIAAIEE R QANG D +++H S+EA A Q EQ Sbjct: 57 TSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQ 116 Query: 121 XXXXXXXXXXDVXXXXXXXXXXXXDCQGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVE 180 + GTA DDT QGGQ D KTEERG D G DQG + Sbjct: 117 SQQVRPERRSATREAGPSGSG---ERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGD 173 Query: 181 QQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAELRQDDVVQPVAGILDV 240 QQ+S Q AEAELR+DDVVQPVAGILDV Sbjct: 174 QQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDG-AEAELREDDVVQPVAGILDV 232 Query: 241 LDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLV 300 LDNYAFVRTSGYL GPHDVYVSM+MVRKNG+RRGDAVTGAVRVP+EGEQ +QRQKFNPLV Sbjct: 233 LDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLV 292 Query: 301 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIV 360 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLET+ +RLTTRVIDLIMPIGKGQRALIV Sbjct: 293 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIV 352 Query: 361 SPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 420 SPPKAGKTTILQDIANAITRNN ECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS Sbjct: 353 SPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 412 Query: 421 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 480 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP Sbjct: 413 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 472 Query: 481 KRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPA 540 KRFLGAARNIEEGGSLTIIATAMVETGSTGD VIFEEFKGTGNAELKLDRKIAERRVFPA Sbjct: 473 KRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPA 532 Query: 541 VDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVS 600 VDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLLMSQLRKTK NYEFLVQVS Sbjct: 533 VDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVS 592 Query: 601 KTTPGSMDDD 610 KTTPGSMD D Sbjct: 593 KTTPGSMDSD 602 >tr|A2VHJ3|A2VHJ3_MYCTU Tax_Id=348776 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis C] Length = 602 Score = 850 bits (2196), Expect = 0.0 Identities = 465/610 (76%), Positives = 488/610 (80%), Gaps = 8/610 (1%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +T+TDLIT GE+TD ++A TD PD+ A GSL+TMVLPELRALAN+AGVKG Sbjct: 1 MTDTDLITAGESTDGKP-SDAAATDPPDLNADEPA---GSLATMVLPELRALANRAGVKG 56 Query: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNYAIXXXXX 120 TSGMRK+ELIAAIEE R QANG D +++H S+EA A Q EQ Sbjct: 57 TSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQ 116 Query: 121 XXXXXXXXXXDVXXXXXXXXXXXXDCQGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVE 180 + GTA DDT QGGQ D KTEERG D G DQG + Sbjct: 117 SQQVRPERRSATREAGPSGSG---ERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGD 173 Query: 181 QQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAELRQDDVVQPVAGILDV 240 QQ+S Q AEAELR+DDVVQPVAGILDV Sbjct: 174 QQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDG-AEAELREDDVVQPVAGILDV 232 Query: 241 LDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLV 300 LDNYAFVRTSGYL GPHDVYVSM+MVRKNG+RRGDAVTGAVRVP+EGEQ +QRQKFNPLV Sbjct: 233 LDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLV 292 Query: 301 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIV 360 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLET+ +RLTTRVIDLIMPIGKGQRALIV Sbjct: 293 RLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIV 352 Query: 361 SPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 420 SPPKAGKTTILQDIANAITRNN ECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS Sbjct: 353 SPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 412 Query: 421 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 480 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP Sbjct: 413 DHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPP 472 Query: 481 KRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPA 540 KRFLGAARNIEEGGSLTIIATAMVETGSTGD VIFEEFKGTGNAELKLDRKIAERRVFPA Sbjct: 473 KRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPA 532 Query: 541 VDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVS 600 VDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLLMSQLRKTK NYEFLVQVS Sbjct: 533 VDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVS 592 Query: 601 KTTPGSMDDD 610 KTTPGSMD D Sbjct: 593 KTTPGSMDSD 602 >tr|B2HQL5|B2HQL5_MYCMM Tax_Id=216594 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium marinum] Length = 621 Score = 828 bits (2139), Expect = 0.0 Identities = 453/625 (72%), Positives = 489/625 (78%), Gaps = 19/625 (3%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +T+TDLIT GE+TD + +++VT D+ D+ A T G+L+TMVLPELRALANQ GVKG Sbjct: 1 MTDTDLITAGESTDADKKSDSVTKDSSDLNTAAPT---GALATMVLPELRALANQVGVKG 57 Query: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAA--------QEEQN 112 TSGMRK+ELIAAI+E R +ANGT P+ D G ++ STEA A Q+EQN Sbjct: 58 TSGMRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQN 117 Query: 113 YAIXXXXXXXXXXXXXXXDVXXXXXXXXXXXXDCQ-------GTADDDTRTLQGGQSDTK 165 + + G AD++ + + Q D K Sbjct: 118 ASSGDTVRRERRRSSRDSGTSSRDGADSAGGSPDKRGKRAAGGDADNNQKAPEKAQEDAK 177 Query: 166 TEERGPDVGNDQGVEQQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAEL 225 T+ + G DQG QQ S Q ++AEL Sbjct: 178 TDGGAAESGGDQGAGQQGSGGQQSRGEDDGEGRQGRRGRRFRDRRRRGERSGDG-SDAEL 236 Query: 226 RQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPR 285 R+DDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSM+MVRKNGLRRGDAVTGAVRVPR Sbjct: 237 REDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPR 296 Query: 286 EGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVI 345 EGEQ +QRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQRLRLETT +RLTTRVI Sbjct: 297 EGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQRLRLETTTERLTTRVI 356 Query: 346 DLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRS 405 DLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NN ECHLMVVLVDERPEEVTDM RS Sbjct: 357 DLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRS 416 Query: 406 VKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASG 465 VKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASG Sbjct: 417 VKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASG 476 Query: 466 RILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAE 525 RILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGD VIFEEFKGTGNAE Sbjct: 477 RILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAE 536 Query: 526 LKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQ 585 LKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLLMSQ Sbjct: 537 LKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQ 596 Query: 586 LRKTKTNYEFLVQVSKTTPGSMDDD 610 LRKTK NYEFLVQVSKTTPG+MD+D Sbjct: 597 LRKTKNNYEFLVQVSKTTPGNMDND 621 >tr|Q73X46|Q73X46_MYCPA Tax_Id=1770 (rho)SubName: Full=Rho;[Mycobacterium paratuberculosis] Length = 620 Score = 826 bits (2133), Expect = 0.0 Identities = 460/640 (71%), Positives = 488/640 (76%), Gaps = 50/640 (7%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +T+TDL T GENTD +L+ AVTTDTPD K A +G+L+TMVLPELRALANQ GVKG Sbjct: 1 MTDTDLFTAGENTDANQLSTAVTTDTPDAKTHAP---VGALTTMVLPELRALANQVGVKG 57 Query: 61 TSGMRKSELIAAIEECRGQANG---------------------------TSVNDGPSRDH 93 TSGMRK+ELIAAI+E RGQANG T+ + + DH Sbjct: 58 TSGMRKNELIAAIKEVRGQANGAAPAEQANGAEPAEDSGKPDAKDAKDDTTPDTKDANDH 117 Query: 94 GGSATAISTEALAAQEEQNYAIXXXXXXXXXXXXXXXDVXXXXXXXXXXXXDCQGTADDD 153 G+ +A A EQN A +G+ D D Sbjct: 118 TGAQSAAEAPA---PSEQNGATAEAPRRERRSASRDAGAAG------------RGSDDAD 162 Query: 154 TRTLQGGQSDTKTEERGPDVGNDQGVEQQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXX 213 T QS + E+ G DQ +QQSS Q Sbjct: 163 RETDGREQSKQDSREQSKQDGGDQ--DQQSSGGQQGRGSNQQDDDGEGRQGRRGRRFRDR 220 Query: 214 XXXXXXXAE---AELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNG 270 E AELR+DDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSM+MVRKNG Sbjct: 221 RRRGERSGEGGDAELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNG 280 Query: 271 LRRGDAVTGAVRVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQR 330 LRRGDAVTGAVRVP++GEQ +QRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQR Sbjct: 281 LRRGDAVTGAVRVPKDGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQR 340 Query: 331 LRLETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVV 390 LRLETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NN ECHLMVV Sbjct: 341 LRLETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVV 400 Query: 391 LVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSI 450 LVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSI Sbjct: 401 LVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSI 460 Query: 451 TRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTG 510 TRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTG Sbjct: 461 TRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTG 520 Query: 511 DMVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVL 570 D VIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVL Sbjct: 521 DTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVL 580 Query: 571 SGLDSHQAIDLLMSQLRKTKTNYEFLVQVSKTTPGSMDDD 610 SGLDSHQAIDLLMSQLRKTK NYEFLVQVSKTTPG+MD+D Sbjct: 581 SGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGAMDND 620 >tr|A0PUL3|A0PUL3_MYCUA Tax_Id=362242 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium ulcerans] Length = 621 Score = 823 bits (2127), Expect = 0.0 Identities = 450/625 (72%), Positives = 487/625 (77%), Gaps = 19/625 (3%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +T+TDLIT GE+TD + +++VT D+ D+ A T G+L+TMVLPELRALANQ GVKG Sbjct: 1 MTDTDLITAGESTDADKKSDSVTKDSSDLNTAAPT---GALATMVLPELRALANQVGVKG 57 Query: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAA--------QEEQN 112 TSGMRK+ELIAAI+E R + NGT P+ D G ++ STEA A Q+EQN Sbjct: 58 TSGMRKNELIAAIQEFRDRTNGTPAAAEPTPDSGEQKSSASTEAPAVNEATKDAPQQEQN 117 Query: 113 YAIXXXXXXXXXXXXXXXDVXXXXXXXXXXXXDCQ-------GTADDDTRTLQGGQSDTK 165 + + + G AD++ + + Q D K Sbjct: 118 ASSGDTVRRERRRSSRDSETSSRDGADSAGESPDKRGKRAAGGDADNNQKAPEKAQEDAK 177 Query: 166 TEERGPDVGNDQGVEQQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAEL 225 + + G DQG QQ S Q ++AEL Sbjct: 178 IDGGAAESGGDQGAGQQGSGGQQSRGEDDGEGRQGRRGRRFRDRRRRGERSGDG-SDAEL 236 Query: 226 RQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPR 285 R+DDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSM+MVRKNGLRRGDAVTGAVRVPR Sbjct: 237 REDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPR 296 Query: 286 EGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVI 345 EGEQ +QRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQRLRLETT +RLTTRVI Sbjct: 297 EGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQRLRLETTTERLTTRVI 356 Query: 346 DLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRS 405 DLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NN ECHLMVVLVDERPEEVTDM RS Sbjct: 357 DLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRS 416 Query: 406 VKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASG 465 VKGEVIASTFDRPPSDHTS AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASG Sbjct: 417 VKGEVIASTFDRPPSDHTSAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASG 476 Query: 466 RILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAE 525 RILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGD VIFEEFKGTGNAE Sbjct: 477 RILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAE 536 Query: 526 LKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQ 585 LKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLLMSQ Sbjct: 537 LKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQ 596 Query: 586 LRKTKTNYEFLVQVSKTTPGSMDDD 610 LRKTK NYEFLVQVSKTTPG+MD+D Sbjct: 597 LRKTKNNYEFLVQVSKTTPGNMDND 621 >tr|A0QCW4|A0QCW4_MYCA1 Tax_Id=243243 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium avium] Length = 596 Score = 798 bits (2062), Expect = 0.0 Identities = 437/599 (72%), Positives = 466/599 (77%), Gaps = 13/599 (2%) Query: 22 VTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKGTSGMRKSELIAAIEECRGQAN 81 +TTDTPD K A +G+L+TMVLPELRALANQ GVKGTSGMRK+ELIAAI+E RGQAN Sbjct: 1 MTTDTPDAKTHAP---VGALTTMVLPELRALANQVGVKGTSGMRKNELIAAIKEVRGQAN 57 Query: 82 GTSVNDG-----PSRDHG--GSATAISTEALAAQEEQNYAIXXXXXXXXXXXXXXXDVXX 134 G + + P+ D G + A ++ ++ + Sbjct: 58 GAAPAEQANGAEPAEDSGKPDAKDAKDDTTPDTKDANDHTGAQSAAEAPAQNGATAEAPR 117 Query: 135 XXXXXXXXXXDCQGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVEQQSSSLQPXXXXXX 194 G +DD G+ K + R + +QQSS Q Sbjct: 118 RERRSASRDAGAAGRGNDDADRETDGREQNKQDSREQSKQDGGDQDQQSSGGQQGRGSNQ 177 Query: 195 XXXXXXXXXXXXXXXXXXXXXXXXXXAE---AELRQDDVVQPVAGILDVLDNYAFVRTSG 251 E AELR+DDVVQPVAGILDVLDNYAFVRTSG Sbjct: 178 QDDDGEGRQGRRGRRFRDRRRRGERSGEGGDAELREDDVVQPVAGILDVLDNYAFVRTSG 237 Query: 252 YLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLVRLDSINGGSVE 311 YLAGPHDVYVSM+MVRKNGLRRGDAVTGAVRVP++GEQ +QRQKFNPLVRLDS+NGGSVE Sbjct: 238 YLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPKDGEQPNQRQKFNPLVRLDSVNGGSVE 297 Query: 312 DAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTIL 371 DAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTIL Sbjct: 298 DAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTIL 357 Query: 372 QDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIE 431 QDIANAIT+NN ECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIE Sbjct: 358 QDIANAITKNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIE 417 Query: 432 RAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIE 491 RAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIE Sbjct: 418 RAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIE 477 Query: 492 EGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKD 551 EGGSLTIIATAMVETGSTGD VIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKD Sbjct: 478 EGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKD 537 Query: 552 ELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVSKTTPGSMDDD 610 ELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTK NYEFLVQVSKTTPG+MD+D Sbjct: 538 ELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGAMDND 596 >tr|Q1B536|Q1B536_MYCSS Tax_Id=164756 SubName: Full=Transcription termination factor Rho;[Mycobacterium sp.] Length = 663 Score = 715 bits (1845), Expect = 0.0 Identities = 373/456 (81%), Positives = 397/456 (87%), Gaps = 3/456 (0%) Query: 158 QGGQSDTKTEERGP-DVGNDQGVEQQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 216 +G QSDT++++R D QG S++ Sbjct: 208 RGDQSDTRSDDRSDSDQQQGQGNRNNSNNSADGDDDGDGRGGRRGRRFRDRRRRGERGGE 267 Query: 217 XXXXAEAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDA 276 + E+R+DDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSM+MVRKNGLRRGDA Sbjct: 268 GGGGGDTEIREDDVVQPVAGILDVLDNYAFVRTSGYLPGPNDVYVSMNMVRKNGLRRGDA 327 Query: 277 VTGAVRVPREGEQG--HQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLE 334 VTGAV+VP+EGE G +QRQKFNPLVRLDS+NGG VEDA+KRPEFGKLTPLYPNQRLRLE Sbjct: 328 VTGAVKVPKEGEGGGQNQRQKFNPLVRLDSVNGGPVEDARKRPEFGKLTPLYPNQRLRLE 387 Query: 335 TTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDE 394 T+PD+LTTRVIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAITRNN ECHLMVVLVDE Sbjct: 388 TSPDKLTTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDE 447 Query: 395 RPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLG 454 RPEEVTDMQRSVKGEVIASTFDRPPSDHT+VAELAIERAKRLVEQGKDVVVLLDSITRLG Sbjct: 448 RPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVEQGKDVVVLLDSITRLG 507 Query: 455 RAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVI 514 RAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTI+ATAMVETGSTGD VI Sbjct: 508 RAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIVATAMVETGSTGDTVI 567 Query: 515 FEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLD 574 FEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLL PDEF IVHKLRRVLSGLD Sbjct: 568 FEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLGPDEFAIVHKLRRVLSGLD 627 Query: 575 SHQAIDLLMSQLRKTKTNYEFLVQVSKTTPGSMDDD 610 SHQAIDLLMSQLRKTKTNYEFLVQVSK TPGS+D+D Sbjct: 628 SHQAIDLLMSQLRKTKTNYEFLVQVSKNTPGSVDND 663 Score = 74.3 bits (181), Expect = 4e-11 Identities = 56/136 (41%), Positives = 70/136 (51%), Gaps = 29/136 (21%) Query: 1 VTETDLITVGENTDDTELTNAVTTDT------PDVKATAATVS----------LGSLSTM 44 +T+TDL T ++ + TEL N V T+T P V T A + SL++M Sbjct: 1 MTDTDLFTA-DSAERTELPNVVNTETSTASEGPAVTTTTAESAPTADVASGDRAASLTSM 59 Query: 45 VLPELRALANQAGVKGTSGMRKSELIAAIEECRGQANGTSVNDG------PSRD------ 92 VLPELRALA Q GV+G SGMRKSELIAAI E RG P R+ Sbjct: 60 VLPELRALARQIGVEGASGMRKSELIAAIRERRGDGGAAKAESAAAPQTPPRRERRSASR 119 Query: 93 HGGSATAISTEALAAQ 108 G+A A + EAL A+ Sbjct: 120 QAGAAEAKAPEALEAK 135 >tr|A3Q3C8|A3Q3C8_MYCSJ Tax_Id=164757 SubName: Full=Transcription termination factor Rho;[Mycobacterium sp.] Length = 663 Score = 715 bits (1845), Expect = 0.0 Identities = 373/456 (81%), Positives = 397/456 (87%), Gaps = 3/456 (0%) Query: 158 QGGQSDTKTEERGP-DVGNDQGVEQQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 216 +G QSDT++++R D QG S++ Sbjct: 208 RGDQSDTRSDDRSDSDQQQGQGNRNNSNNSADGDDDGDGRGGRRGRRFRDRRRRGERGGE 267 Query: 217 XXXXAEAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDA 276 + E+R+DDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSM+MVRKNGLRRGDA Sbjct: 268 GGGGGDTEIREDDVVQPVAGILDVLDNYAFVRTSGYLPGPNDVYVSMNMVRKNGLRRGDA 327 Query: 277 VTGAVRVPREGEQG--HQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLE 334 VTGAV+VP+EGE G +QRQKFNPLVRLDS+NGG VEDA+KRPEFGKLTPLYPNQRLRLE Sbjct: 328 VTGAVKVPKEGEGGGQNQRQKFNPLVRLDSVNGGPVEDARKRPEFGKLTPLYPNQRLRLE 387 Query: 335 TTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDE 394 T+PD+LTTRVIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAITRNN ECHLMVVLVDE Sbjct: 388 TSPDKLTTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDE 447 Query: 395 RPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLG 454 RPEEVTDMQRSVKGEVIASTFDRPPSDHT+VAELAIERAKRLVEQGKDVVVLLDSITRLG Sbjct: 448 RPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVEQGKDVVVLLDSITRLG 507 Query: 455 RAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVI 514 RAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTI+ATAMVETGSTGD VI Sbjct: 508 RAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIVATAMVETGSTGDTVI 567 Query: 515 FEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLD 574 FEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLL PDEF IVHKLRRVLSGLD Sbjct: 568 FEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLGPDEFAIVHKLRRVLSGLD 627 Query: 575 SHQAIDLLMSQLRKTKTNYEFLVQVSKTTPGSMDDD 610 SHQAIDLLMSQLRKTKTNYEFLVQVSK TPGS+D+D Sbjct: 628 SHQAIDLLMSQLRKTKTNYEFLVQVSKNTPGSVDND 663 Score = 74.3 bits (181), Expect = 4e-11 Identities = 56/136 (41%), Positives = 70/136 (51%), Gaps = 29/136 (21%) Query: 1 VTETDLITVGENTDDTELTNAVTTDT------PDVKATAATVS----------LGSLSTM 44 +T+TDL T ++ + TEL N V T+T P V T A + SL++M Sbjct: 1 MTDTDLFTA-DSAERTELPNVVNTETSTASEGPAVTTTTAESAPTADVASGDRAASLTSM 59 Query: 45 VLPELRALANQAGVKGTSGMRKSELIAAIEECRGQANGTSVNDG------PSRD------ 92 VLPELRALA Q GV+G SGMRKSELIAAI E RG P R+ Sbjct: 60 VLPELRALARQIGVEGASGMRKSELIAAIRERRGDGGAAKAESAAAPQTPPRRERRSASR 119 Query: 93 HGGSATAISTEALAAQ 108 G+A A + EAL A+ Sbjct: 120 QAGAAEAKAPEALEAK 135 >tr|A1UK01|A1UK01_MYCSK Tax_Id=189918 SubName: Full=Transcription termination factor Rho;[Mycobacterium sp.] Length = 663 Score = 715 bits (1845), Expect = 0.0 Identities = 373/456 (81%), Positives = 397/456 (87%), Gaps = 3/456 (0%) Query: 158 QGGQSDTKTEERGP-DVGNDQGVEQQSSSLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 216 +G QSDT++++R D QG S++ Sbjct: 208 RGDQSDTRSDDRSDSDQQQGQGNRNNSNNSADGDDDGDGRGGRRGRRFRDRRRRGERGGE 267 Query: 217 XXXXAEAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDA 276 + E+R+DDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSM+MVRKNGLRRGDA Sbjct: 268 GGGGGDTEIREDDVVQPVAGILDVLDNYAFVRTSGYLPGPNDVYVSMNMVRKNGLRRGDA 327 Query: 277 VTGAVRVPREGEQG--HQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLE 334 VTGAV+VP+EGE G +QRQKFNPLVRLDS+NGG VEDA+KRPEFGKLTPLYPNQRLRLE Sbjct: 328 VTGAVKVPKEGEGGGQNQRQKFNPLVRLDSVNGGPVEDARKRPEFGKLTPLYPNQRLRLE 387 Query: 335 TTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDE 394 T+PD+LTTRVIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAITRNN ECHLMVVLVDE Sbjct: 388 TSPDKLTTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDE 447 Query: 395 RPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLG 454 RPEEVTDMQRSVKGEVIASTFDRPPSDHT+VAELAIERAKRLVEQGKDVVVLLDSITRLG Sbjct: 448 RPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVEQGKDVVVLLDSITRLG 507 Query: 455 RAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVI 514 RAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTI+ATAMVETGSTGD VI Sbjct: 508 RAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIVATAMVETGSTGDTVI 567 Query: 515 FEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLD 574 FEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLL PDEF IVHKLRRVLSGLD Sbjct: 568 FEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLGPDEFAIVHKLRRVLSGLD 627 Query: 575 SHQAIDLLMSQLRKTKTNYEFLVQVSKTTPGSMDDD 610 SHQAIDLLMSQLRKTKTNYEFLVQVSK TPGS+D+D Sbjct: 628 SHQAIDLLMSQLRKTKTNYEFLVQVSKNTPGSVDND 663 Score = 74.3 bits (181), Expect = 4e-11 Identities = 56/136 (41%), Positives = 70/136 (51%), Gaps = 29/136 (21%) Query: 1 VTETDLITVGENTDDTELTNAVTTDT------PDVKATAATVS----------LGSLSTM 44 +T+TDL T ++ + TEL N V T+T P V T A + SL++M Sbjct: 1 MTDTDLFTA-DSAERTELPNVVNTETSTASEGPAVTTTTAESAPTADVASGDRAASLTSM 59 Query: 45 VLPELRALANQAGVKGTSGMRKSELIAAIEECRGQANGTSVNDG------PSRD------ 92 VLPELRALA Q GV+G SGMRKSELIAAI E RG P R+ Sbjct: 60 VLPELRALARQIGVEGASGMRKSELIAAIRERRGDGGAAKAESAAAPQTPPRRERRSASR 119 Query: 93 HGGSATAISTEALAAQ 108 G+A A + EAL A+ Sbjct: 120 QAGAAEAKAPEALEAK 135 >tr|A0R218|A0R218_MYCS2 Tax_Id=246196 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium smegmatis] Length = 664 Score = 714 bits (1843), Expect = 0.0 Identities = 366/391 (93%), Positives = 379/391 (96%), Gaps = 2/391 (0%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 + ELR+DDVVQPVAGILDVLDNYAFVRTSGYLAGP+DVYVSM+MVRKNGLRRGDAVTGAV Sbjct: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 Query: 282 RVPREGEQG--HQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDR 339 RVPREG+ G +QRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLET+P+R Sbjct: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 Query: 340 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEV 399 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNN ECHLMVVLVDERPEEV Sbjct: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 Query: 400 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 459 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 Query: 460 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFK 519 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGD VIFEEFK Sbjct: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 Query: 520 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAI 579 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAI Sbjct: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 Query: 580 DLLMSQLRKTKTNYEFLVQVSKTTPGSMDDD 610 DLL+SQLRKTKTNYEFLVQVSKT PGSMD D Sbjct: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 Score = 77.4 bits (189), Expect = 5e-12 Identities = 44/82 (53%), Positives = 55/82 (67%), Gaps = 6/82 (7%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +TETDL T +D +L+ AV ++T A SLSTMVLPELRALA + GV+G Sbjct: 1 MTETDLFTADNASDTGDLSGAVKSNT------APRARSASLSTMVLPELRALAKEIGVEG 54 Query: 61 TSGMRKSELIAAIEECRGQANG 82 SG+RKSELIAAI RG++NG Sbjct: 55 ASGLRKSELIAAIRAHRGESNG 76 >tr|A1TD72|A1TD72_MYCVP Tax_Id=350058 SubName: Full=Transcription termination factor Rho;[Mycobacterium vanbaalenii] Length = 684 Score = 709 bits (1829), Expect = 0.0 Identities = 370/464 (79%), Positives = 392/464 (84%), Gaps = 7/464 (1%) Query: 147 QGTADDDTRTLQGGQSDTKTEERGPDVGNDQGVEQQSSSLQPXXXXXXXXXXXXXXXXXX 206 +G AD DTR+ G Q + RG + G ++ + Sbjct: 228 EGRADSDTRSDGGDQQGGQNRGRGGEGGGNRAADNDDDG-------DGRQGRRGRRFRDR 280 Query: 207 XXXXXXXXXXXXXXAEAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMV 266 + ELR+DDVVQPVAGILDVLDNYAFVRTSGYLAGP+DVYVSM+MV Sbjct: 281 RRRERGGEGGGGGDRDTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMV 340 Query: 267 RKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLY 326 RKNGLRRGDAVTGAVRVP++GEQ +QRQKFNPLVRLDS+NGG VE+AKKRPEF KLTPLY Sbjct: 341 RKNGLRRGDAVTGAVRVPKDGEQSNQRQKFNPLVRLDSVNGGPVEEAKKRPEFQKLTPLY 400 Query: 327 PNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECH 386 PN RLRLET+ D+LTTRVIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAITRNN ECH Sbjct: 401 PNTRLRLETSSDKLTTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECH 460 Query: 387 LMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVL 446 LMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVL Sbjct: 461 LMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVL 520 Query: 447 LDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVET 506 LDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVET Sbjct: 521 LDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVET 580 Query: 507 GSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKL 566 GSTGD VIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEF +VHKL Sbjct: 581 GSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAVVHKL 640 Query: 567 RRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVSKTTPGSMDDD 610 RRVLSGLD HQAIDLLMSQLRKTK NYEFLVQVSK TPG +D+D Sbjct: 641 RRVLSGLDPHQAIDLLMSQLRKTKNNYEFLVQVSKNTPGGVDND 684 Score = 75.5 bits (184), Expect = 2e-11 Identities = 49/121 (40%), Positives = 64/121 (52%), Gaps = 16/121 (13%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTP---------------DVKATAATVSLGSLSTMV 45 +T+TDL T G + D EL N VT D A G+L+++V Sbjct: 1 MTDTDLFTAG-SADSGELPNTVTATNSASSEQAGAPAAAPAADEAPAATRARRGALTSLV 59 Query: 46 LPELRALANQAGVKGTSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEAL 105 LPELRA+A + GV+G SGMRKSELIAAI E RG+ANG + + +A + T A Sbjct: 60 LPELRAMAKEIGVEGASGMRKSELIAAIRERRGEANGKPAAKSDTAEATAAAPSGDTSAP 119 Query: 106 A 106 A Sbjct: 120 A 120 >tr|A4T8L9|A4T8L9_MYCGI Tax_Id=350054 SubName: Full=Transcription termination factor Rho;[Mycobacterium gilvum] Length = 691 Score = 691 bits (1782), Expect = 0.0 Identities = 356/392 (90%), Positives = 369/392 (94%), Gaps = 3/392 (0%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 + ELR+DDVVQPVAGILDVLDNYAFVRTSGYLAGP+DVYVSM+MVRKNGLRRGDAVTGAV Sbjct: 300 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 359 Query: 282 RVPREGEQG---HQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPD 338 RVPR+ E G + RQKFNPLVRLD++NG VE+AKKRPEF KLTPLYPNQRLRLET+ D Sbjct: 360 RVPRDNEGGGDKNPRQKFNPLVRLDTVNGKPVEEAKKRPEFTKLTPLYPNQRLRLETSSD 419 Query: 339 RLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEE 398 +LTTRVIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAITRNN ECHLMVVLVDERPEE Sbjct: 420 KLTTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEE 479 Query: 399 VTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 458 VTDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYN Sbjct: 480 VTDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 539 Query: 459 NASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEF 518 NASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGD VIFEEF Sbjct: 540 NASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEF 599 Query: 519 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQA 578 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLS DEF +VHKLRRVLSGLD HQA Sbjct: 600 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSTDEFAVVHKLRRVLSGLDPHQA 659 Query: 579 IDLLMSQLRKTKTNYEFLVQVSKTTPGSMDDD 610 IDLLMSQLRKTK NYEFLVQVSK TPG D D Sbjct: 660 IDLLMSQLRKTKNNYEFLVQVSKNTPGGNDHD 691 Score = 91.7 bits (226), Expect = 3e-16 Identities = 59/127 (46%), Positives = 73/127 (57%), Gaps = 13/127 (10%) Query: 1 VTETDLITVGENTDDTELTNAVTTD----TPDVKATAATVSL--GSLSTMVLPELRALAN 54 +T+TDL T G N D E+ N VT D P A AA + GSL++MVLPELRA+A Sbjct: 1 MTDTDLFTAGGNADSGEMPNTVTADISTSAPADSAPAAAPARRGGSLTSMVLPELRAMAK 60 Query: 55 QAGVKGTSGMRKSELIAAIEECRGQANGT-------SVNDGPSRDHGGSATAISTEALAA 107 + GV+G SGMRK ELIAAI E RG+ANG+ + P+ GSAT AA Sbjct: 61 EIGVEGASGMRKGELIAAIRERRGEANGSAETKKGDAPTSAPAETAAGSATDSGQAPAAA 120 Query: 108 QEEQNYA 114 Q Q+ A Sbjct: 121 QAGQDEA 127 >tr|B1MLU7|B1MLU7_MYCA9 Tax_Id=561007 SubName: Full=Probable transcription termination factor Rho;[Mycobacterium abscessus] Length = 646 Score = 686 bits (1771), Expect = 0.0 Identities = 352/387 (90%), Positives = 369/387 (95%), Gaps = 2/387 (0%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E ELR+DDVVQPVAGILDVLDNYAFVRTSGYLAGP+DVYVSM++VRKNGLRRGDA+TGAV Sbjct: 251 ETELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITGAV 310 Query: 282 RVPREGEQGHQ--RQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDR 339 RVPR+ + G+Q RQKFNPLVRLDS+NGG VEDAKKRP+F KLTPLYPNQRLRLETT ++ Sbjct: 311 RVPRDPDAGNQNQRQKFNPLVRLDSVNGGPVEDAKKRPDFTKLTPLYPNQRLRLETTTEK 370 Query: 340 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEV 399 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTI+Q+IANAI+ NN ECHLMVVLVDERPEEV Sbjct: 371 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQNIANAISANNPECHLMVVLVDERPEEV 430 Query: 400 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 459 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 431 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 490 Query: 460 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFK 519 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGD VIFEEFK Sbjct: 491 ASPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFK 550 Query: 520 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAI 579 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELL+S DEF IVHKLRRVLSGLDSHQAI Sbjct: 551 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLMSGDEFAIVHKLRRVLSGLDSHQAI 610 Query: 580 DLLMSQLRKTKTNYEFLVQVSKTTPGS 606 DLLMSQLRKTK NYEFLVQVSK TPG+ Sbjct: 611 DLLMSQLRKTKNNYEFLVQVSKNTPGA 637 Score = 73.9 bits (180), Expect = 6e-11 Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 2/104 (1%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +T+TDLI + E A ++D + LG+LSTMVLPELRALA+Q GVKG Sbjct: 1 MTDTDLIATEAAPETPEAPAAASSDRAGKERRGD--GLGALSTMVLPELRALASQVGVKG 58 Query: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEA 104 TSGMRK +LIAAI E +G N+ ++ A++ EA Sbjct: 59 TSGMRKGDLIAAIREHQGALGAPKNNNQAAQSQQPQASSAPAEA 102 >tr|Q5Z0Z4|Q5Z0Z4_NOCFA Tax_Id=37329 (rho)SubName: Full=Putative transcription termination factor Rho;[Nocardia farcinica] Length = 681 Score = 686 bits (1770), Expect = 0.0 Identities = 345/388 (88%), Positives = 372/388 (95%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E E+R+DDV+QPVAGILDVLDNYAFVRTSGYLAGP+DVYVSM++VRKNGLRRGDA+TGAV Sbjct: 294 ELEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITGAV 353 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 R PR+GEQG+QRQKF+PLVRLD++NGG VE AK+RPEFGKLTPLYPNQRLRLETTP++LT Sbjct: 354 RAPRDGEQGNQRQKFDPLVRLDTVNGGDVEAAKRRPEFGKLTPLYPNQRLRLETTPNKLT 413 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAI NN EC+LMVVLVDERPEEVTD Sbjct: 414 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIATNNPECYLMVVLVDERPEEVTD 473 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVE GKDVVVLLDSITRLGRAYNN+S Sbjct: 474 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEMGKDVVVLLDSITRLGRAYNNSS 533 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGD VIFEEFKGT Sbjct: 534 PASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGT 593 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDE ++HKLRRVLSGLDSHQAIDL Sbjct: 594 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEAAVLHKLRRVLSGLDSHQAIDL 653 Query: 582 LMSQLRKTKTNYEFLVQVSKTTPGSMDD 609 L+ +L+K+K N EFL+QVSKT PG++D+ Sbjct: 654 LIDRLKKSKNNLEFLMQVSKTAPGALDE 681 Score = 56.6 bits (135), Expect = 9e-06 Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 4/98 (4%) Query: 1 VTETDLI-TVGENTDDTELTNAVTTDTPDVKATAAT-VSLGSLSTMVLPELRALANQAGV 58 +T+TDL+ T G +++ + + K + T V+ L+ M+LP+LRALA + G+ Sbjct: 1 MTDTDLLATPGVDSNPSSSGGRESESGQISKMSEHTDVARSGLTGMLLPQLRALAGELGI 60 Query: 59 KGTSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGS 96 +GTSGMRK +LIAAI+E QA + D P+R S Sbjct: 61 RGTSGMRKGDLIAAIKE--NQAGRAAKADKPARSEAKS 96 >tr|Q0SGN6|Q0SGN6_RHOSR Tax_Id=101510 SubName: Full=Transcription termination factor Rho;[Rhodococcus sp.] Length = 694 Score = 679 bits (1751), Expect = 0.0 Identities = 341/388 (87%), Positives = 370/388 (95%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E E+R+DDV+QPVAGILDVLDNYAFVRTSGYLAGP+DVYVSM+++RKNGLRRGDA+TGAV Sbjct: 307 ETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLRRGDAITGAV 366 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 RV REGEQG+QRQKFNPLVR+D++NGG VE AKKRPEFGKLTPLYPNQRLRLETTP+ LT Sbjct: 367 RVGREGEQGNQRQKFNPLVRIDTVNGGDVEAAKKRPEFGKLTPLYPNQRLRLETTPNILT 426 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 TRVIDL+MPIGKGQRALIVSPPKAGKT++LQ IANAI NN EC+LMVVLVDERPEEVTD Sbjct: 427 TRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAIATNNPECYLMVVLVDERPEEVTD 486 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEVI+STFDRPP DHTSVAELAIERAKRLVE GKDVVVLLDSITRLGRAYNN+S Sbjct: 487 MQRSVKGEVISSTFDRPPGDHTSVAELAIERAKRLVEAGKDVVVLLDSITRLGRAYNNSS 546 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGD VIFEEFKGT Sbjct: 547 PASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGT 606 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDE ++HKLRRVLSGLDSHQAIDL Sbjct: 607 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEAAVLHKLRRVLSGLDSHQAIDL 666 Query: 582 LMSQLRKTKTNYEFLVQVSKTTPGSMDD 609 L+ +L+K+K+N EFL+QVSKT PG++DD Sbjct: 667 LIDRLKKSKSNIEFLMQVSKTAPGAIDD 694 Score = 54.7 bits (130), Expect = 4e-05 Identities = 36/91 (39%), Positives = 46/91 (50%), Gaps = 13/91 (14%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATA-----ATVSL--------GSLSTMVLP 47 +T+TDLI + A D+ +TA T S LS MVL Sbjct: 1 MTDTDLIAAPVRASSVDTVGAQAGDSSQASSTAPGQGAVTASTKRAEARRGAGLSGMVLT 60 Query: 48 ELRALANQAGVKGTSGMRKSELIAAIEECRG 78 ELR LA + G+KG SGMRK +LIAAI+E +G Sbjct: 61 ELRTLAGELGIKGISGMRKGDLIAAIKERQG 91 >tr|D0L9H1|D0L9H1_9ACTO Tax_Id=526226 SubName: Full=Transcription termination factor Rho;[Gordonia bronchialis DSM 43247] Length = 662 Score = 678 bits (1750), Expect = 0.0 Identities = 343/389 (88%), Positives = 368/389 (94%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E ++ +DDV+QPVAGILDVLDNYAFVRTSGYLAGP+DVYVSM++VRKNGLRRGDA+TGAV Sbjct: 274 EPQVSEDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITGAV 333 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 +VPREGEQ +QRQKFNPLVRLD++NGG VE A+KRPEFGKLTPLYPNQRLRLETTP+RL Sbjct: 334 KVPREGEQQNQRQKFNPLVRLDTVNGGDVEAARKRPEFGKLTPLYPNQRLRLETTPERLD 393 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT NN ECHLMVVLVDERPEEVTD Sbjct: 394 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITINNPECHLMVVLVDERPEEVTD 453 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVE GKDVVVLLDSITRLGRAYNNAS Sbjct: 454 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVESGKDVVVLLDSITRLGRAYNNAS 513 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIA+A+VETGSTGD VIFEEFKGT Sbjct: 514 PASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIASALVETGSTGDTVIFEEFKGT 573 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAELKLDRKIA+RRVFPAVDVN S TRKDEL++SP+EF I+HKLRRVLSGLDS QAIDL Sbjct: 574 GNAELKLDRKIADRRVFPAVDVNQSSTRKDELMMSPEEFSIMHKLRRVLSGLDSQQAIDL 633 Query: 582 LMSQLRKTKTNYEFLVQVSKTTPGSMDDD 610 L+SQL+KTKTN EFL+QV PG+M DD Sbjct: 634 LLSQLKKTKTNVEFLMQVQSNAPGAMKDD 662 Score = 58.5 bits (140), Expect = 2e-06 Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 10/100 (10%) Query: 1 VTETDLITVG--ENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGV 58 +TETDLIT E + D+ + A + + T L+ MVL ELRA+A + G+ Sbjct: 1 MTETDLITAPAEEGSADSAASGAASKSRTRTQRTG-------LTGMVLTELRAVAGELGI 53 Query: 59 KGTSGMRKSELIAAIEECR-GQANGTSVNDGPSRDHGGSA 97 KGTSGMRK +LIAAI+E + G A+ + + + SA Sbjct: 54 KGTSGMRKGDLIAAIKERQAGAASANGIGEAEKKARRASA 93 >tr|C1AW12|C1AW12_RHOOB Tax_Id=632772 (rho)SubName: Full=Transcription termination factor Rho;[Rhodococcus opacus] Length = 687 Score = 677 bits (1748), Expect = 0.0 Identities = 340/388 (87%), Positives = 370/388 (95%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E E+R+DDV+QPVAGILDVLDNYAFVRTSGYLAGP+DVYVSM+++RKNGLRRGDA+TGAV Sbjct: 300 ETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLRRGDAITGAV 359 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 RV REG+QG+QRQKFNPLVR+D++NGG VE AKKRPEFGKLTPLYPNQRLRLETTP+ LT Sbjct: 360 RVGREGDQGNQRQKFNPLVRIDTVNGGDVEAAKKRPEFGKLTPLYPNQRLRLETTPNILT 419 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 TRVIDL+MPIGKGQRALIVSPPKAGKT++LQ IANAI NN EC+LMVVLVDERPEEVTD Sbjct: 420 TRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAIATNNPECYLMVVLVDERPEEVTD 479 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEVI+STFDRPP DHTSVAELAIERAKRLVE GKDVVVLLDSITRLGRAYNN+S Sbjct: 480 MQRSVKGEVISSTFDRPPGDHTSVAELAIERAKRLVEAGKDVVVLLDSITRLGRAYNNSS 539 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGD VIFEEFKGT Sbjct: 540 PASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGT 599 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDE ++HKLRRVLSGLDSHQAIDL Sbjct: 600 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEAAVLHKLRRVLSGLDSHQAIDL 659 Query: 582 LMSQLRKTKTNYEFLVQVSKTTPGSMDD 609 L+ +L+K+K+N EFL+QVSKT PG++DD Sbjct: 660 LIDRLKKSKSNLEFLMQVSKTAPGAIDD 687 Score = 60.8 bits (146), Expect = 5e-07 Identities = 45/122 (36%), Positives = 61/122 (50%), Gaps = 22/122 (18%) Query: 1 VTETDLI----------TVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELR 50 +T+TDLI TVG D+ ++VT T A LS MVL ELR Sbjct: 1 MTDTDLIAAPVRASSVDTVGAQAGDSTQASSVTASTKRADARRGA----GLSGMVLTELR 56 Query: 51 ALANQAGVKGTSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEE 110 +LA + G+KG SGMRK +LIAAI+E +G + + + TA T A A+ E Sbjct: 57 SLAGELGIKGISGMRKGDLIAAIKERQGGSAAPAA--------AATETAPRTRATRAKRE 108 Query: 111 QN 112 Q+ Sbjct: 109 QS 110 >tr|C1A1Z2|C1A1Z2_RHOE4 Tax_Id=234621 (rho)SubName: Full=Transcription termination factor Rho;[Rhodococcus erythropolis] Length = 712 Score = 664 bits (1714), Expect = 0.0 Identities = 333/388 (85%), Positives = 363/388 (93%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E E+R+DDV+QPVAGILDVLDNYAFVRTSGYLAGP+DVYVSM+++RKNGLRRGDA+TGAV Sbjct: 325 ETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLRRGDAITGAV 384 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 RV R+GEQG QRQKFNPLVR+D++NGG VE AKKRPEF KLTPLYPNQRLRLET LT Sbjct: 385 RVSRDGEQGSQRQKFNPLVRIDTVNGGDVEAAKKRPEFNKLTPLYPNQRLRLETEQHILT 444 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 TRVIDL+MPIGKGQRALIVSPPKAGKT++LQ IANA+ NN EC+LMV+LVDERPEEVTD Sbjct: 445 TRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAVATNNPECYLMVILVDERPEEVTD 504 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEVI+STFDRPP DHT+VAELAIERAKRLVE GKDVVVLLDSITRLGRAYNN+S Sbjct: 505 MQRSVKGEVISSTFDRPPGDHTAVAELAIERAKRLVEMGKDVVVLLDSITRLGRAYNNSS 564 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGD VIFEEFKGT Sbjct: 565 PASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGT 624 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAELKLDRKIAERRVFPAVDVNPS TRKDELLLSPDE ++HKLRRVLSGLDSHQAIDL Sbjct: 625 GNAELKLDRKIAERRVFPAVDVNPSSTRKDELLLSPDEAAVLHKLRRVLSGLDSHQAIDL 684 Query: 582 LMSQLRKTKTNYEFLVQVSKTTPGSMDD 609 L+ +L+K+K N EFL+QVSKT PG++DD Sbjct: 685 LIDRLKKSKNNLEFLMQVSKTAPGAIDD 712 Score = 61.2 bits (147), Expect = 4e-07 Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 14/122 (11%) Query: 1 VTETDLITVG-----ENTDDTELTNAVTTDTPDVKATAATVSLGS-LSTMVLPELRALAN 54 +T+TDLI E+ D+++ +++ + A G+ LS MVL ELR LA Sbjct: 1 MTDTDLIATSAPAGSESGDNSQASSSASNGAVATSTKRAETRRGAGLSGMVLTELRTLAG 60 Query: 55 QAGVKGTSGMRKSELIAAIEECRGQA-------NGTSVNDGP-SRDHGGSATAISTEALA 106 + G+KGTSGMRK +LIAAI+E +G + + +++D P +R S A TE A Sbjct: 61 ELGIKGTSGMRKGDLIAAIKERQGGSAKAAPAQSELTLDDAPVARTRAKSTRAARTETPA 120 Query: 107 AQ 108 A+ Sbjct: 121 AE 122 >tr|C3JI49|C3JI49_RHOER Tax_Id=596309 (rho)SubName: Full=Transcription termination factor Rho;[Rhodococcus erythropolis SK121] Length = 718 Score = 664 bits (1714), Expect = 0.0 Identities = 333/388 (85%), Positives = 363/388 (93%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E E+R+DDV+QPVAGILDVLDNYAFVRTSGYLAGP+DVYVSM+++RKNGLRRGDA+TGAV Sbjct: 331 ETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLRRGDAITGAV 390 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 RV R+GEQG QRQKFNPLVR+D++NGG VE AKKRPEF KLTPLYPNQRLRLET LT Sbjct: 391 RVSRDGEQGSQRQKFNPLVRIDTVNGGDVEAAKKRPEFNKLTPLYPNQRLRLETEQHILT 450 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 TRVIDL+MPIGKGQRALIVSPPKAGKT++LQ IANA+ NN EC+LMV+LVDERPEEVTD Sbjct: 451 TRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAVATNNPECYLMVILVDERPEEVTD 510 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEVI+STFDRPP DHT+VAELAIERAKRLVE GKDVVVLLDSITRLGRAYNN+S Sbjct: 511 MQRSVKGEVISSTFDRPPGDHTAVAELAIERAKRLVEMGKDVVVLLDSITRLGRAYNNSS 570 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGD VIFEEFKGT Sbjct: 571 PASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGT 630 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAELKLDRKIAERRVFPAVDVNPS TRKDELLLSPDE ++HKLRRVLSGLDSHQAIDL Sbjct: 631 GNAELKLDRKIAERRVFPAVDVNPSSTRKDELLLSPDEAAVLHKLRRVLSGLDSHQAIDL 690 Query: 582 LMSQLRKTKTNYEFLVQVSKTTPGSMDD 609 L+ +L+K+K N EFL+QVSKT PG++DD Sbjct: 691 LIDRLKKSKNNLEFLMQVSKTAPGAIDD 718 Score = 61.2 bits (147), Expect = 4e-07 Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 14/122 (11%) Query: 1 VTETDLITVG-----ENTDDTELTNAVTTDTPDVKATAATVSLGS-LSTMVLPELRALAN 54 +T+TDLI E+ D+++ +++ + A G+ LS MVL ELR LA Sbjct: 1 MTDTDLIATSAPAGSESGDNSQASSSASNGAVATSTKRAETRRGAGLSGMVLTELRTLAG 60 Query: 55 QAGVKGTSGMRKSELIAAIEECRGQA-------NGTSVNDGP-SRDHGGSATAISTEALA 106 + G+KGTSGMRK +LIAAI+E +G + + +++D P +R S A TE A Sbjct: 61 ELGIKGTSGMRKGDLIAAIKERQGGSAKAAPAQSELTLDDAPVARTRAKSTRAARTETPA 120 Query: 107 AQ 108 A+ Sbjct: 121 AE 122 >tr|C7MX54|C7MX54_SACVD Tax_Id=471857 SubName: Full=Transcription termination factor Rho;[Saccharomonospora viridis] Length = 613 Score = 639 bits (1648), Expect = 0.0 Identities = 327/384 (85%), Positives = 352/384 (91%), Gaps = 2/384 (0%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E E+R+DDV+ PVAGILDVL+NYAFVRTSGYL GP+DVYVS+S+VRK GLRRGDA+TG V Sbjct: 228 ETEIREDDVLLPVAGILDVLENYAFVRTSGYLPGPNDVYVSLSLVRKYGLRRGDAITGVV 287 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 + PREGEQ QRQKFNPLVR+DS+NG E AKKRPEF KLTPLYPN+RLRLETTP++LT Sbjct: 288 KQPREGEQ--QRQKFNPLVRVDSVNGLDPEVAKKRPEFHKLTPLYPNERLRLETTPNKLT 345 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 TRVIDL+MP+GKGQRALIVSPPKAGKTTI+QDIANAIT NN ECHLMVVLVDERPEEVTD Sbjct: 346 TRVIDLVMPVGKGQRALIVSPPKAGKTTIMQDIANAITTNNPECHLMVVLVDERPEEVTD 405 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEVIASTFDRPPSDHTSVAEL+IERAKRLVE G DVVVLLDSITRLGRAYN A+ Sbjct: 406 MQRSVKGEVIASTFDRPPSDHTSVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAA 465 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRILSGGVDSTAL+PPKRFLGAARNIE GGSLTI ATAMVETGSTGD VIFEEFKGT Sbjct: 466 PASGRILSGGVDSTALFPPKRFLGAARNIEGGGSLTIFATAMVETGSTGDTVIFEEFKGT 525 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAELKLDRKIAERRVFPAVDVNPSGTRK+ELLLSPDE + HKL RVL LDS QAIDL Sbjct: 526 GNAELKLDRKIAERRVFPAVDVNPSGTRKEELLLSPDELAVTHKLHRVLHALDSQQAIDL 585 Query: 582 LMSQLRKTKTNYEFLVQVSKTTPG 605 L+ +LRKTKTN EFL+QVSK PG Sbjct: 586 LLDRLRKTKTNAEFLMQVSKNMPG 609 Score = 47.4 bits (111), Expect = 0.006 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 7/66 (10%) Query: 44 MVLPELRALANQAGVKGTSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTE 103 MV+ ELR LA + G+ GT+GMRK +LIAAI E +G+ T R S+ + T Sbjct: 1 MVIAELRELAAELGITGTTGMRKGDLIAAIRERQGKTKRT-------RTTAKSSGSAGTA 53 Query: 104 ALAAQE 109 +AA+E Sbjct: 54 GVAAEE 59 >tr|C2AS02|C2AS02_TSUPA Tax_Id=521096 SubName: Full=Transcription termination factor Rho;[Tsukamurella paurometabola DSM 20162] Length = 653 Score = 622 bits (1605), Expect = e-176 Identities = 320/396 (80%), Positives = 354/396 (89%), Gaps = 14/396 (3%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E ++ +DDV+QPVAGILDVLDNYAFVRTSGY+AGP+DVYVSM+MVR+NGLRRGDA+ GAV Sbjct: 252 EPQVSEDDVLQPVAGILDVLDNYAFVRTSGYIAGPNDVYVSMNMVRRNGLRRGDAIVGAV 311 Query: 282 RVPREGE------------QGHQ--RQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYP 327 ++PR+GE +G+Q RQKFNPLVRLDS+NG V+ AK RPEF KLTPLYP Sbjct: 312 KMPRDGESNDGGNQGGGGGRGNQSNRQKFNPLVRLDSVNGQDVDSAKNRPEFNKLTPLYP 371 Query: 328 NQRLRLETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHL 387 NQRLRLET + LTTRVIDLIMPIGKGQRALI +PPKAGKTTI+QDIANAI NN EC+L Sbjct: 372 NQRLRLETAQNILTTRVIDLIMPIGKGQRALISAPPKAGKTTIMQDIANAIATNNPECYL 431 Query: 388 MVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLL 447 MVVLVDERPEEVTDMQRS KGEVI+STFDRPPSDHTSVAELAIERAKRLVE GKDVVVLL Sbjct: 432 MVVLVDERPEEVTDMQRSTKGEVISSTFDRPPSDHTSVAELAIERAKRLVEGGKDVVVLL 491 Query: 448 DSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETG 507 DSITRLGRAYNN+SPASGRILSGG+DSTALYPPKRFLGAARNIE GGSLTIIATAMVETG Sbjct: 492 DSITRLGRAYNNSSPASGRILSGGIDSTALYPPKRFLGAARNIENGGSLTIIATAMVETG 551 Query: 508 STGDMVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLR 567 STGD VIFEEFKGTGNAELKLDRKI+ERR+FPAVDV+PS TRKDELLL+PDE IVHKLR Sbjct: 552 STGDTVIFEEFKGTGNAELKLDRKISERRIFPAVDVHPSSTRKDELLLAPDEAAIVHKLR 611 Query: 568 RVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVSKTT 603 R+LSGLDS QAI+LL+SQL+KT+ N EFL+ V K + Sbjct: 612 RLLSGLDSQQAIELLISQLKKTQNNIEFLMMVQKNS 647 Score = 50.1 bits (118), Expect = 9e-04 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 11/109 (10%) Query: 1 VTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 +TETD+ T + DT + + + D + + L+ MVL ELR +A G+KG Sbjct: 1 MTETDVTT----SPDTAASTSASAQRADERRRSG------LNGMVLAELRTIAGDLGIKG 50 Query: 61 TSGMRKSELIAAIEECRGQ-ANGTSVNDGPSRDHGGSATAISTEALAAQ 108 SG+RK +LIAAI +G A TS + P++ A A +A A+ Sbjct: 51 ISGLRKGDLIAAITAQQGSGAAPTSKAEKPAKTAPPKAAAPKADAPKAE 99 >tr|C6WHL1|C6WHL1_ACTMD Tax_Id=446462 SubName: Full=Transcription termination factor Rho;[Actinosynnema mirum] Length = 709 Score = 619 bits (1596), Expect = e-175 Identities = 312/388 (80%), Positives = 352/388 (90%), Gaps = 2/388 (0%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 + E+R DDV+ PVAGILDVL+NYAFVRTSGYLAGP+DVYVS+S+VRK+GLRRGDA+ GAV Sbjct: 324 DTEVRDDDVLLPVAGILDVLENYAFVRTSGYLAGPNDVYVSLSLVRKHGLRRGDAIIGAV 383 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 R PR+GEQ QRQKFNPLVR+D ING E+++ RP+F KLTPLYPN+RLRLET P LT Sbjct: 384 RQPRDGEQ--QRQKFNPLVRVDKINGLDPEESRNRPDFTKLTPLYPNERLRLETEPHILT 441 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 TRVIDL+MPIGKGQRAL+VSPPKAGKT++LQ IANAIT NN ECHLMVVLVDERPEEVTD Sbjct: 442 TRVIDLVMPIGKGQRALVVSPPKAGKTSVLQSIANAITTNNPECHLMVVLVDERPEEVTD 501 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEVIASTFDRPPSDHT+++ELAIERAKRLVE G DVVVLLDSITRLGRAYN A+ Sbjct: 502 MQRSVKGEVIASTFDRPPSDHTTISELAIERAKRLVEMGHDVVVLLDSITRLGRAYNLAA 561 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLT+IATA+VETGS GD VIFEEFKGT Sbjct: 562 PASGRILSGGVDSTALYPPKRFLGAARNIEGGGSLTVIATALVETGSAGDSVIFEEFKGT 621 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAELKLDRKIA++R FPAVDV+ SGTRK++LLLSPDE ++HKLRRVL LD QAIDL Sbjct: 622 GNAELKLDRKIADKRTFPAVDVDSSGTRKEDLLLSPDELAVMHKLRRVLHALDGQQAIDL 681 Query: 582 LMSQLRKTKTNYEFLVQVSKTTPGSMDD 609 L+ +LRKT+TN EFL+QV+KTTPG+ +D Sbjct: 682 LLDRLRKTRTNIEFLMQVAKTTPGADND 709 Score = 47.4 bits (111), Expect = 0.006 Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 6/95 (6%) Query: 20 NAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKGTSGMRKSELIAAIEECRGQ 79 NA++T T A LS MVL ELR LA Q G+ T+ +RK +LIAAI+E +G Sbjct: 25 NALSTPT---NGGAPARKRAGLSGMVLAELRELAGQLGIDSTAKLRKGDLIAAIKERQGG 81 Query: 80 ANGTSVNDGP---SRDHGGSATAISTEALAAQEEQ 111 +G P + ATA EA A E+ Sbjct: 82 TSGRGSAATPPKAEKPKAEKATAKPAEAPAPAAEK 116 >tr|A4FN42|A4FN42_SACEN Tax_Id=405948 (rho1)SubName: Full=Putative transcription termination factor Rho;[Saccharopolyspora erythraea] Length = 642 Score = 605 bits (1559), Expect = e-171 Identities = 307/388 (79%), Positives = 345/388 (88%), Gaps = 2/388 (0%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E E+R+DDV+ PVAGILDVL+NYAFVRTSGYLAGP+DVYVS+S+VRK GLRRGDA+ G + Sbjct: 257 EPEVREDDVLLPVAGILDVLENYAFVRTSGYLAGPNDVYVSLSLVRKYGLRRGDAIKGVI 316 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 R PREGEQ QRQKFNPLVR+D+ING + AK R EF KLTPLYPN+RLRLET P LT Sbjct: 317 RQPREGEQ--QRQKFNPLVRVDAINGLEPDAAKGRSEFHKLTPLYPNERLRLETEPHNLT 374 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 R+IDL+MP+GKGQRALIVSPPKAGKT +LQ IANAIT NN ECHLMVVL DERPEEVTD Sbjct: 375 GRIIDLVMPVGKGQRALIVSPPKAGKTMVLQAIANAITTNNPECHLMVVLADERPEEVTD 434 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEVIASTFDRPPSDHT+VAEL+IERAKRLVE G DVVVLLDSITRLGRAYN A+ Sbjct: 435 MQRSVKGEVIASTFDRPPSDHTTVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAA 494 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTI ATA+VETGST D VIFEEFKGT Sbjct: 495 PASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIFATALVETGSTMDTVIFEEFKGT 554 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAELKLDRK+A++R+FPAVDV+ S TRKDE+LLSPDE + HKLRRVL+ LD+ QA++L Sbjct: 555 GNAELKLDRKLADKRLFPAVDVDASSTRKDEILLSPDELAVTHKLRRVLAALDAQQALEL 614 Query: 582 LMSQLRKTKTNYEFLVQVSKTTPGSMDD 609 L +LRK++TN EFL+QV+KTTPG +D Sbjct: 615 LQDRLRKSRTNIEFLMQVAKTTPGKDED 642 Score = 43.9 bits (102), Expect = 0.063 Identities = 24/42 (57%), Positives = 32/42 (76%), Gaps = 1/42 (2%) Query: 39 GSLSTMVLPELRALANQAGVKGTSGMRKSELIAAIEECRGQA 80 G LS MVL ELR LA + G++ T+G+RK +LIAAI+E +G A Sbjct: 34 GGLSGMVLAELRQLAGELGIE-TTGLRKGDLIAAIKERQGGA 74 >tr|C4LJM6|C4LJM6_CORK4 Tax_Id=645127 SubName: Full=Transcription termination factor;[Corynebacterium kroppenstedtii] Length = 673 Score = 601 bits (1550), Expect = e-170 Identities = 308/394 (78%), Positives = 345/394 (87%), Gaps = 7/394 (1%) Query: 224 ELRQDDVVQPVAGILDVLDNY-AFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVR 282 +LR+ + QP+AGILDV+DN AF+RTSGY +GP+DVYVSM+MVR G+RRGDAVTG ++ Sbjct: 277 QLREGETFQPIAGILDVVDNNTAFIRTSGYQSGPNDVYVSMNMVRSQGMRRGDAVTGQIK 336 Query: 283 VPREGE------QGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETT 336 V +G +G RQKF PL R+D++NG + E+AK RPEF KLTPLYPNQRLRLET Sbjct: 337 VREDGSSRPQHGRGRNRQKFAPLARVDTVNGMTPEEAKARPEFAKLTPLYPNQRLRLETD 396 Query: 337 PDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERP 396 +LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQD+ANAIT NN EC+LMVVLVDERP Sbjct: 397 QKKLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDVANAITTNNQECYLMVVLVDERP 456 Query: 397 EEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRA 456 EEVTDMQRSV GEVIASTFDRPPS+HT+VAELAIERAKRLVE G+DVVVLLDSITRLGRA Sbjct: 457 EEVTDMQRSVNGEVIASTFDRPPSEHTTVAELAIERAKRLVEAGQDVVVLLDSITRLGRA 516 Query: 457 YNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFE 516 YNN+SPASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIATAMVETGS GD VIFE Sbjct: 517 YNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFE 576 Query: 517 EFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSH 576 EFKGTGNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLL+PDE ++HKLRR+LS LD Sbjct: 577 EFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLAPDEARVMHKLRRILSALDPQ 636 Query: 577 QAIDLLMSQLRKTKTNYEFLVQVSKTTPGSMDDD 610 QAIDLL+ QLRKTK N EFL+Q++ + P S+ DD Sbjct: 637 QAIDLLIKQLRKTKNNGEFLMQIASSAPMSVPDD 670 Score = 42.7 bits (99), Expect = 0.14 Identities = 18/35 (51%), Positives = 29/35 (82%) Query: 40 SLSTMVLPELRALANQAGVKGTSGMRKSELIAAIE 74 +L+ M +PEL+ALA + G++G SG+RK ++IAAI+ Sbjct: 8 NLAAMRIPELKALAAEKGIRGLSGLRKGDIIAAIQ 42 >tr|C8XIA7|C8XIA7_NAKMY Tax_Id=479431 SubName: Full=Transcription termination factor Rho;[Nakamurella multipartita] Length = 717 Score = 599 bits (1545), Expect = e-169 Identities = 302/388 (77%), Positives = 345/388 (88%), Gaps = 2/388 (0%) Query: 221 AEAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGA 280 +E ELR DDV+ PVAGILDVLD+YAF+RTSGYL GP+DVYVS+S VRKNGLRRGDAVTGA Sbjct: 332 SEPELRDDDVLVPVAGILDVLDSYAFIRTSGYLTGPNDVYVSLSQVRKNGLRRGDAVTGA 391 Query: 281 VRVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRL 340 VR REGEQ QRQKFN LVRLDS+NG E A+ RPEF KLTPLYPN+RLRLET L Sbjct: 392 VRAQREGEQ--QRQKFNALVRLDSVNGLDPEQARNRPEFTKLTPLYPNERLRLETESHLL 449 Query: 341 TTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVT 400 TTRVIDL+MP+GKGQRALIVSPPKAGKT ++Q IANAI +NN ECHLMVVLVDERPEEVT Sbjct: 450 TTRVIDLVMPVGKGQRALIVSPPKAGKTMVMQAIANAIAKNNPECHLMVVLVDERPEEVT 509 Query: 401 DMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNA 460 DMQRSVKGEVIASTFDRPP+DHT VAEL+IERAKRLVE G+DVVVLLDSITRLGRAYN A Sbjct: 510 DMQRSVKGEVIASTFDRPPADHTMVAELSIERAKRLVEMGRDVVVLLDSITRLGRAYNLA 569 Query: 461 SPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKG 520 +PASGRILSGGVDSTAL+PPKRFLGAARNIE GGSLTI A+A+VETGS GD VIFEEFKG Sbjct: 570 APASGRILSGGVDSTALFPPKRFLGAARNIENGGSLTIFASALVETGSAGDTVIFEEFKG 629 Query: 521 TGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAID 580 TGNAELKLDR++A++R+FPA+DV+ S TRK++LL+SPDE +V KLRRVL+ LD+ Q+I+ Sbjct: 630 TGNAELKLDRRLADKRIFPAIDVDQSSTRKEDLLMSPDELAVVVKLRRVLAALDTQQSIE 689 Query: 581 LLMSQLRKTKTNYEFLVQVSKTTPGSMD 608 L++ +LRKT++N EFL+QV+K TPG D Sbjct: 690 LVLDRLRKTRSNIEFLMQVAKNTPGGSD 717 Score = 55.5 bits (132), Expect = 2e-05 Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 9/97 (9%) Query: 16 TELTNAVTTDTPDVKATAATVSLG------SLSTMVLPELRALANQAGVKGTSGMRKSEL 69 TE T ++ T D + A G LS MVL +L+A+A+Q G++GTSGMRK +L Sbjct: 2 TETTESLEVPTQDASSEAPRAGRGRSRKGEGLSGMVLTDLKAMASQLGIRGTSGMRKGDL 61 Query: 70 IAAI--EECRGQANGTSVNDGPSRDHGGSATAISTEA 104 +AAI ++ G A + ++ P+ GSA A + A Sbjct: 62 VAAITAKQSGGHAGAPAAHE-PAGPTNGSAPATNGHA 97 >tr|A4XAX8|A4XAX8_SALTO Tax_Id=369723 SubName: Full=Transcription termination factor Rho;[Salinispora tropica] Length = 675 Score = 597 bits (1539), Expect = e-168 Identities = 295/384 (76%), Positives = 346/384 (90%), Gaps = 2/384 (0%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E ++ +DDV+ PVAGI+DVLDNYAFVRT+GYLAGP+DVYVSMS +++ GLRRGDA+TGAV Sbjct: 293 EPQVSEDDVLVPVAGIIDVLDNYAFVRTTGYLAGPNDVYVSMSQIKRYGLRRGDAITGAV 352 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 R REGEQ +R K+NPLVRLD+ING E+AK+RPEF +LTPLYP +RLRLE+ P LT Sbjct: 353 RAAREGEQ--RRDKYNPLVRLDTINGMEPEEAKRRPEFYRLTPLYPQERLRLESEPHILT 410 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 TRVIDL+MPIGKGQRALIVSPPKAGKT +LQ IANAIT NN ECHLMVVLVDERPEEVTD Sbjct: 411 TRVIDLVMPIGKGQRALIVSPPKAGKTMVLQAIANAITHNNPECHLMVVLVDERPEEVTD 470 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEV+A+TFDRPP DHT+VAELAIERAKRLVE G DVVVLLDS+TRLGR+YN A+ Sbjct: 471 MQRSVKGEVVAATFDRPPQDHTTVAELAIERAKRLVELGHDVVVLLDSVTRLGRSYNLAA 530 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRI+SGG+DSTALYPPKRFLGAARNIE GGSLTI+ATA+VETGST D VIFEEFKGT Sbjct: 531 PASGRIMSGGIDSTALYPPKRFLGAARNIENGGSLTILATALVETGSTADTVIFEEFKGT 590 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAELKLDRKIA++R FPA+D++PSGTRK+E+LL+P+E IVHKLR+VL LDS A+DL Sbjct: 591 GNAELKLDRKIADKRTFPAIDIHPSGTRKEEILLAPEELAIVHKLRKVLHALDSQAALDL 650 Query: 582 LMSQLRKTKTNYEFLVQVSKTTPG 605 L+ +L+K++TN EFL+Q++K+TPG Sbjct: 651 LLDRLKKSRTNIEFLMQIAKSTPG 674 Score = 42.4 bits (98), Expect = 0.18 Identities = 21/40 (52%), Positives = 28/40 (70%) Query: 44 MVLPELRALANQAGVKGTSGMRKSELIAAIEECRGQANGT 83 M+LPEL++LA G+ GT+ MRK ELI+AI E +G T Sbjct: 1 MLLPELQSLAASLGISGTARMRKGELISAITERQGGGAAT 40 >tr|A8L3U9|A8L3U9_FRASN Tax_Id=298653 SubName: Full=Transcription termination factor Rho; Flags: Precursor;[Frankia sp.] Length = 670 Score = 595 bits (1534), Expect = e-168 Identities = 301/383 (78%), Positives = 341/383 (89%), Gaps = 2/383 (0%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E +R+DDV+ PVAGILDVLDNYAFVRTSGYL GP DVYVS++ VR+NGLRRGDA+TG V Sbjct: 287 EPTVREDDVLVPVAGILDVLDNYAFVRTSGYLTGPTDVYVSLAQVRRNGLRRGDAITGVV 346 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 R P+EGEQ +R K+N LVRLD+ING E+A+ RPEF KLTPLYP RLRLET P +T Sbjct: 347 RAPQEGEQ--RRDKYNALVRLDTINGMEPEEARGRPEFHKLTPLYPQDRLRLETEPHMMT 404 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 TRVIDL+MPIGKGQRALIVSPPKAGKT +LQ IANAIT NN ECHLMVVLVDERPEEVTD Sbjct: 405 TRVIDLVMPIGKGQRALIVSPPKAGKTMVLQSIANAITTNNPECHLMVVLVDERPEEVTD 464 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEV+ASTFDRPP+DHT+VAEL+IERAKRLVE G DVVVLLDSITRLGRAYN A+ Sbjct: 465 MQRSVKGEVVASTFDRPPADHTNVAELSIERAKRLVELGHDVVVLLDSITRLGRAYNLAA 524 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATA+VETGST D VIFEEFKGT Sbjct: 525 PASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATALVETGSTMDTVIFEEFKGT 584 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAELKLDRKIA++RVFPAVDV+ SGTRK+++LL+PDE I+HKLRRVL + QA+DL Sbjct: 585 GNAELKLDRKIADKRVFPAVDVDASGTRKEDILLAPDELAIMHKLRRVLHTREPQQALDL 644 Query: 582 LMSQLRKTKTNYEFLVQVSKTTP 604 L+ +L++T+TNYEFL+Q++KT P Sbjct: 645 LLDRLKQTRTNYEFLMQIAKTAP 667 >tr|A8M2K9|A8M2K9_SALAI Tax_Id=391037 SubName: Full=Transcription termination factor Rho;[Salinispora arenicola] Length = 688 Score = 593 bits (1530), Expect = e-167 Identities = 294/384 (76%), Positives = 345/384 (89%), Gaps = 2/384 (0%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E ++ +DDV+ PVAGI+DVLDNYAFVRT+GYLAGP+DVYVSMS +++ GLRRGDA+TGAV Sbjct: 306 EPQVSEDDVLVPVAGIIDVLDNYAFVRTTGYLAGPNDVYVSMSQIKRYGLRRGDAITGAV 365 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 R REGEQ +R K+NPLVRLD+ING E+AK+RPEF +LTPLYP +RLRLE+ P LT Sbjct: 366 RAAREGEQ--RRDKYNPLVRLDTINGMEPEEAKRRPEFYRLTPLYPQERLRLESEPHILT 423 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 TRVIDL+MPIGKGQRALIVSPPKAGKT +LQ IANAIT NN ECHLMVVLVDERPEEVTD Sbjct: 424 TRVIDLVMPIGKGQRALIVSPPKAGKTMVLQAIANAITHNNPECHLMVVLVDERPEEVTD 483 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEVIA+TFDRPP DHT+VAELAIERAKRLVE G DVVVLLDS+TRLGR+YN A+ Sbjct: 484 MQRSVKGEVIAATFDRPPQDHTTVAELAIERAKRLVELGHDVVVLLDSVTRLGRSYNLAA 543 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRI+SGG+DSTALYPPKRFLGAARNIE GGSLTI+ATA+VETGS D VIFEEFKGT Sbjct: 544 PASGRIMSGGIDSTALYPPKRFLGAARNIENGGSLTILATALVETGSMADTVIFEEFKGT 603 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAELKLDRKIA++R FPA+D++PSGTRK+E+LL+P+E IVHKLR+VL LDS A+DL Sbjct: 604 GNAELKLDRKIADKRTFPAIDIHPSGTRKEEILLAPEELAIVHKLRKVLHSLDSQAALDL 663 Query: 582 LMSQLRKTKTNYEFLVQVSKTTPG 605 L+ +L++++TN EFL+Q++K+TPG Sbjct: 664 LLDRLKQSRTNIEFLMQIAKSTPG 687 Score = 53.5 bits (127), Expect = 8e-05 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 5/103 (4%) Query: 13 TDDTELTNAVTTDTPDVKATAATVSLGS---LSTMVLPELRALANQAGVKGTSGMRKSEL 69 +D T++T+ V+ D A T S LS M+LPEL++LA G+ GT+ MRK EL Sbjct: 2 SDTTDVTSDVSNVAGDATTAAPTRRRRSGTGLSAMLLPELQSLAASLGISGTARMRKGEL 61 Query: 70 IAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQN 112 I+AI E +G G + R +A A++ E + A+ ++ Sbjct: 62 ISAITERQG--GGAATGTPRPRAEVAAAAALAREEVHAEVRES 102 >tr|Q2J6L8|Q2J6L8_FRASC Tax_Id=106370 SubName: Full=Transcription termination factor Rho; Flags: Precursor;[Frankia sp.] Length = 698 Score = 592 bits (1527), Expect = e-167 Identities = 301/383 (78%), Positives = 342/383 (89%), Gaps = 2/383 (0%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E LR+DDV+ PVAGILDVLDNYAFVRTSGYL GP DVYVS++ VR+NGLRRGDA+TG V Sbjct: 315 EPVLREDDVLVPVAGILDVLDNYAFVRTSGYLTGPTDVYVSLAQVRRNGLRRGDAITGVV 374 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 R P+EGEQ +R K+N LVRLD+ING E+A+ RPEF KLTPLYP +RLRLET P LT Sbjct: 375 RAPQEGEQ--RRDKYNALVRLDTINGMEPEEARGRPEFTKLTPLYPQERLRLETEPHMLT 432 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 TRVIDL+MPIGKGQRALIVSPPKAGKT +LQ IANAIT NN E HLMVVL+DERPEEVTD Sbjct: 433 TRVIDLVMPIGKGQRALIVSPPKAGKTMVLQSIANAITTNNPEVHLMVVLIDERPEEVTD 492 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEVIASTFDRPP+DHT+VAEL+IERAKRLVE G DVVVLLDSITRLGRAYN A+ Sbjct: 493 MQRSVKGEVIASTFDRPPADHTNVAELSIERAKRLVELGHDVVVLLDSITRLGRAYNLAA 552 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATA+VETGST D VIFEEFKGT Sbjct: 553 PASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATALVETGSTMDTVIFEEFKGT 612 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAELKLDRKIA++R+FPAVDV+ SGTRK+E+LL+PDE I+HKLRRVL ++ QA++L Sbjct: 613 GNAELKLDRKIADKRIFPAVDVDASGTRKEEILLAPDELVIMHKLRRVLHTRETQQALEL 672 Query: 582 LMSQLRKTKTNYEFLVQVSKTTP 604 L+ +L++T+TNYEFL+Q++KT P Sbjct: 673 LLDRLKQTRTNYEFLMQIAKTAP 695 Score = 45.4 bits (106), Expect = 0.022 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%) Query: 41 LSTMVLPELRALANQAGVKGTSGMRKSELIAAIEECRGQANG--TSVNDGPSRDHGGSAT 98 LS M+LPEL+A+A+ G++G +RK +LIAAI+ + + T V P+ +A+ Sbjct: 11 LSAMLLPELQAMASSLGIQGVGRLRKGQLIAAIQNVQNNESAAVTPVAAAPATSSASAAS 70 Query: 99 AIST 102 ST Sbjct: 71 TAST 74 >tr|C4RQ92|C4RQ92_9ACTO Tax_Id=219305 SubName: Full=Transcription termination factor Rho;[Micromonospora sp. ATCC 39149] Length = 690 Score = 592 bits (1527), Expect = e-167 Identities = 292/384 (76%), Positives = 345/384 (89%), Gaps = 2/384 (0%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E ++ +DDV+ PVAGI+DVLDNYAFVRT+GYLAGP+DVYVSMS +++ GLRRGDA+TGAV Sbjct: 308 EPQVSEDDVLVPVAGIIDVLDNYAFVRTTGYLAGPNDVYVSMSQIKRYGLRRGDAITGAV 367 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 R R+GEQ +R K+NPLVRLD+ING ++A++RPEF KLTPLYP +RLRLET P LT Sbjct: 368 RTARDGEQ--RRDKYNPLVRLDTINGMEPDEARRRPEFYKLTPLYPQERLRLETEPHILT 425 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 TRVIDL+MPIGKGQRALIVSPPKAGKT +LQ IANAIT NN ECHLMVVLVDERPEEVTD Sbjct: 426 TRVIDLVMPIGKGQRALIVSPPKAGKTMVLQAIANAITHNNPECHLMVVLVDERPEEVTD 485 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEVIA+TFDRPP DHT+VAELAIERAKRLVE G DVVVLLDS+TRLGR+YN A+ Sbjct: 486 MQRSVKGEVIAATFDRPPQDHTTVAELAIERAKRLVELGHDVVVLLDSVTRLGRSYNLAA 545 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRI+SGG+DSTALYPPKRFLGAARNIE GGSLTI+ATA+VETGS D VIFEEFKGT Sbjct: 546 PASGRIMSGGIDSTALYPPKRFLGAARNIENGGSLTILATALVETGSMADTVIFEEFKGT 605 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAELKLDRKIA++R FPA+D++PSGTRK+E+LL+P+E I+HKLR+VL LDS A+DL Sbjct: 606 GNAELKLDRKIADKRTFPAIDIHPSGTRKEEILLAPEELAIIHKLRKVLHSLDSQAALDL 665 Query: 582 LMSQLRKTKTNYEFLVQVSKTTPG 605 L+ +L++++TN EFL+Q++K+TPG Sbjct: 666 LLDRLKQSRTNIEFLMQIAKSTPG 689 Score = 54.7 bits (130), Expect = 4e-05 Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 5/102 (4%) Query: 13 TDDTELTNAVTTDTPDVKATAATVSLGS---LSTMVLPELRALANQAGVKGTSGMRKSEL 69 +D T++T+ V+ D A A T S LS M+LPEL++LA G+ GT+ MRK EL Sbjct: 2 SDTTDVTSDVSNVAGDATAAAPTRRRRSGTGLSAMLLPELQSLAASLGISGTARMRKGEL 61 Query: 70 IAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQ 111 I+AI E +G A + P + +A A + E + A+ Q Sbjct: 62 ISAISERQGGA--AAGTPRPRAEVAAAAAAPAREEVRAEVSQ 101 >tr|Q6NHU1|Q6NHU1_CORDI Tax_Id=1717 (rho)SubName: Full=Transcription termination factor Rho homolog;[Corynebacterium diphtheriae] Length = 687 Score = 592 bits (1525), Expect = e-167 Identities = 309/391 (79%), Positives = 344/391 (87%), Gaps = 6/391 (1%) Query: 224 ELRQDDVVQPVAGILDVLDN-YAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVR 282 E R+D+V+Q VAGILD++DN AFVRTSGY AG DVYV+ M+R+ GLR GDA+ G VR Sbjct: 293 EPREDEVLQNVAGILDIVDNNVAFVRTSGYHAGAADVYVNNQMIRRLGLRSGDAIVGQVR 352 Query: 283 VPREGE-----QGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTP 337 + E +G RQK+NPLVR+DS+NG +VE+AK RPEF KLTPLYPNQRLRLET P Sbjct: 353 MNGENNHGGHNRGRNRQKYNPLVRVDSVNGMTVEEAKARPEFAKLTPLYPNQRLRLETEP 412 Query: 338 DRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPE 397 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQ+IANAI NN EC+LMVVLVDERPE Sbjct: 413 KVLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNNPECYLMVVLVDERPE 472 Query: 398 EVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAY 457 EVTDMQRSVKGEVIASTFDRPPS+HT+VAELAIERAKRLVEQG+DVVVLLDSITRLGRAY Sbjct: 473 EVTDMQRSVKGEVIASTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRAY 532 Query: 458 NNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEE 517 NN+SPASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIATAMVETGS GD VIFEE Sbjct: 533 NNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFEE 592 Query: 518 FKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQ 577 FKGTGNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLL+P+E I+HKLRR+LS LD+ Q Sbjct: 593 FKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLAPEEARIMHKLRRMLSALDNQQ 652 Query: 578 AIDLLMSQLRKTKTNYEFLVQVSKTTPGSMD 608 AIDLL+ QL+KTK+N EFL+QV+ + P + D Sbjct: 653 AIDLLIKQLKKTKSNGEFLMQVASSAPMAAD 683 Score = 42.4 bits (98), Expect = 0.18 Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 7/45 (15%) Query: 40 SLSTMVLPELRALANQAGVKGTSGMRKSELIAAIEECRGQANGTS 84 +L+ + LPELR +A + G+KGTS +RK +LIAAI NGTS Sbjct: 11 NLAALRLPELRKIAAEMGLKGTSALRKGDLIAAI-------NGTS 48 >tr|C0UBY4|C0UBY4_9ACTO Tax_Id=526225 SubName: Full=Transcription termination factor Rho; Flags: Fragment;[Geodermatophilus obscurus DSM 43160] Length = 496 Score = 589 bits (1519), Expect = e-166 Identities = 301/388 (77%), Positives = 342/388 (88%), Gaps = 3/388 (0%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E + +DDV+ PVAGILDVLDNYAFVRTSGYL GP+DVYVS+S VR+ GLRRGDA+TGAV Sbjct: 112 EPTVSEDDVLLPVAGILDVLDNYAFVRTSGYLTGPNDVYVSLSQVRRYGLRRGDAITGAV 171 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 R PREGE+ + K+N LVRLD++NG E A++RPEF KLTPLYP +RLRLET +LT Sbjct: 172 RQPREGER---KDKYNALVRLDTVNGLEPEQARQRPEFTKLTPLYPQERLRLETESHQLT 228 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 TRVIDL+MPIGKGQRALIVSPPKAGKT +LQ IANAIT NN ECHLMVVLVDERPEEVTD Sbjct: 229 TRVIDLVMPIGKGQRALIVSPPKAGKTMVLQSIANAITTNNPECHLMVVLVDERPEEVTD 288 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEVIASTFDRPPSDHT+VAEL+IERAKRLVE G DVVVLLDSITRLGRAYN A+ Sbjct: 289 MQRSVKGEVIASTFDRPPSDHTTVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAA 348 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIA+A+VETGST D VIFEEFKGT Sbjct: 349 PASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIASALVETGSTMDTVIFEEFKGT 408 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAE+KLDR++A++RVFPAVDVN SGTRK+E+L+SPDE IV KLRRVL+ L+ QA++L Sbjct: 409 GNAEIKLDRRLADKRVFPAVDVNASGTRKEEILMSPDELAIVIKLRRVLAALEPQQALEL 468 Query: 582 LMSQLRKTKTNYEFLVQVSKTTPGSMDD 609 L+ +LRKT+ N EFL+Q+ KTT G +D Sbjct: 469 LLDKLRKTRNNIEFLMQIQKTTLGPGND 496 >tr|Q0RD98|Q0RD98_FRAAA Tax_Id=326424 (rho)SubName: Full=Transcription termination factor rho;[Frankia alni] Length = 791 Score = 586 bits (1511), Expect = e-165 Identities = 297/383 (77%), Positives = 341/383 (89%), Gaps = 2/383 (0%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E +R+DDV+ PVAGILDVLDNYAFVRTSGYL GP DVYVS++ VR+NGLRRGDA+TG V Sbjct: 408 EPVVREDDVLVPVAGILDVLDNYAFVRTSGYLTGPTDVYVSLAQVRRNGLRRGDAITGVV 467 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 R P+EGEQ +R K+N LVRLD+ING E+A+ RPEF KLTPLYP +RLR+ET P LT Sbjct: 468 RAPQEGEQ--RRDKYNALVRLDTINGMEPEEARGRPEFTKLTPLYPQERLRMETEPHLLT 525 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 TRVIDL+MPIGKGQRALIVSPPKAGKT +LQ IANAIT NN E HLMVVLVDERPEEVTD Sbjct: 526 TRVIDLVMPIGKGQRALIVSPPKAGKTMVLQSIANAITTNNPEVHLMVVLVDERPEEVTD 585 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEVIASTFDRPP+DHT+VAEL+IERAKRLVE G DVVVLLDSITRLGRAYN A+ Sbjct: 586 MQRSVKGEVIASTFDRPPADHTNVAELSIERAKRLVELGHDVVVLLDSITRLGRAYNLAA 645 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATA+VETGST D VIFEEFKGT Sbjct: 646 PASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATALVETGSTMDTVIFEEFKGT 705 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAELKLDRKIA++R+FPAVDV+ S TRK+E+LL+P+E I+HKLRRVL ++ QA++L Sbjct: 706 GNAELKLDRKIADKRIFPAVDVDASSTRKEEILLAPEELSIMHKLRRVLHTRENQQALEL 765 Query: 582 LMSQLRKTKTNYEFLVQVSKTTP 604 L+ +L++++TNYEFL+Q++KT P Sbjct: 766 LLDRLKQSRTNYEFLMQIAKTAP 788 Score = 47.8 bits (112), Expect = 0.004 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Query: 21 AVTTDTPD-VKATAATVSLGSLSTMVLPELRALANQAGVKGTSGMRKSELIAAIEECR-G 78 A TT T + AT LS M+LPEL+++A+ G++G +RK +LIAAI+ + G Sbjct: 52 AATTPTAEGATATRRRRQGTGLSAMLLPELQSMASSMGIQGVGRLRKGQLIAAIQNLQNG 111 Query: 79 QANGTSVNDGPSRD 92 +A G S P+ D Sbjct: 112 EAAGGSTASAPTTD 125 >tr|Q47M68|Q47M68_THEFY Tax_Id=269800 SubName: Full=Transcription termination factor Rho;[Thermobifida fusca] Length = 644 Score = 581 bits (1497), Expect = e-163 Identities = 331/600 (55%), Positives = 396/600 (66%), Gaps = 36/600 (6%) Query: 41 LSTMVLPELRALANQAGVKGTSGMRKSELIAAIEECRG---------------------- 78 L+ + L EL+ LA+ G+ GT MRKSE+IAAIE +G Sbjct: 49 LAALKLTELQRLASDLGITGTGRMRKSEIIAAIEAKQGGPVSAPETTTAKTAETASTTAA 108 Query: 79 -QANGTSVNDGPSRDHGGSATAISTEALAAQE-EQNYAIXXXXXXXXXXXXXXXDVXXXX 136 + + + P+ + +TE A + E+ Sbjct: 109 KKKESAATTEDPATEPAAEKADKTTEKTATESAEKPERTRRRSRRRSGEETAETPAAESS 168 Query: 137 XXXXXXXXDCQGTADDDT------RTLQGGQSDTKTEERGPDVGNDQGVEQQSSSLQPXX 190 D +A +T + Q GQ+ T+ E R D G +QQ+S Q Sbjct: 169 DTTESAKEDATASAPAETEKTTTAQPAQNGQNGTR-ERRRRSRNRDGGSDQQASQQQNGT 227 Query: 191 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAE--LRQDDVVQPVAGILDVLDNYAFVR 248 A+ E + +DDV+ PVAGILD+LDNYAFVR Sbjct: 228 KSDSDDEEYSGGSRRRGRRRDRRDRRNRERADQEPVISEDDVLLPVAGILDILDNYAFVR 287 Query: 249 TSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQKFNPLVRLDSINGG 308 T+GYL GP+DVYVS++ VRK GLR+GDA+TGAVR PREGE+ R+KFN LVRLDS+NG Sbjct: 288 TTGYLPGPNDVYVSLAQVRKYGLRKGDAITGAVRQPREGER---REKFNALVRLDSVNGM 344 Query: 309 SVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKT 368 E A+ RPEF KL PLYP +RLRLET P LTTR+IDLI PIGKGQR LIVSPPKAGKT Sbjct: 345 PPERARNRPEFSKLVPLYPQERLRLETEPHILTTRIIDLISPIGKGQRGLIVSPPKAGKT 404 Query: 369 TILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL 428 T+LQ IANAIT+NN ECHLMVVLVDERPEEVTDMQR+VKGEVI STFDRP DHT+VAEL Sbjct: 405 TVLQAIANAITQNNPECHLMVVLVDERPEEVTDMQRTVKGEVIHSTFDRPAEDHTTVAEL 464 Query: 429 AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR 488 AIERAKRLVE G DVVVLLDSITRLGRAYN ++PASGRILSGGVDSTALYPPKRF GAAR Sbjct: 465 AIERAKRLVEMGLDVVVLLDSITRLGRAYNLSAPASGRILSGGVDSTALYPPKRFFGAAR 524 Query: 489 NIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT 548 NIE GGSLTI+ATA+VETGS D VIFEEFKGTGN ELKL R +A++R+FPAVD+ S T Sbjct: 525 NIENGGSLTILATALVETGSRMDEVIFEEFKGTGNMELKLSRSLADKRLFPAVDIEASST 584 Query: 549 RKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVSKTTPGSMD 608 RK+E+LLSP+E I+ KLRRVL LD+ QA++L++S+L+KTK+N EFL+QV KTT G D Sbjct: 585 RKEEILLSPEELNIIWKLRRVLHALDTQQALELVLSKLKKTKSNAEFLLQVQKTTIGPND 644 >tr|Q8FQ32|Q8FQ32_COREF Tax_Id=152794 SubName: Full=Putative transcription termination factor Rho;[Corynebacterium efficiens] Length = 779 Score = 580 bits (1496), Expect = e-163 Identities = 304/400 (76%), Positives = 344/400 (86%), Gaps = 11/400 (2%) Query: 222 EAELRQDDVVQPVAGILDVLD-NYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGA 280 + + + DD +Q VAGILD++D N AFVRT+GY P DV+V+ ++R+ GLR GDA+ G Sbjct: 377 QGDNQNDDQLQNVAGILDIVDTNVAFVRTTGYHPAPSDVFVNNQLIRRMGLRSGDAIVGQ 436 Query: 281 VRVPREGEQG--------HQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLR 332 VR+ + G QG RQK+N LVR+++ING VE+A+ RPEF KLTPLYPNQRLR Sbjct: 437 VRMNQGGNQGGRQGGHGGRNRQKYNNLVRVETINGLPVEEARNRPEFNKLTPLYPNQRLR 496 Query: 333 LETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLV 392 LET P LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQ+IANAI NN EC+LMVVLV Sbjct: 497 LETEPKILTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNNPECYLMVVLV 556 Query: 393 DERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITR 452 DERPEEVTDMQRSVKGEVIASTFDRPPS+HT+VAELAIERAKRLVEQG+DVVVLLDSITR Sbjct: 557 DERPEEVTDMQRSVKGEVIASTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITR 616 Query: 453 LGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDM 512 LGRAYNN+SPASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIATAMVETGS GD Sbjct: 617 LGRAYNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDT 676 Query: 513 VIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSG 572 VIFEEFKGTGNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLL+PDE I+HKLRR+LS Sbjct: 677 VIFEEFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLNPDEARIMHKLRRILSA 736 Query: 573 LDSHQAIDLLMSQLRKTKTNYEFLVQVSKTTP--GSMDDD 610 LD+ QAIDLL+ QL+KTK+N EFL+QV+ + P GS +D+ Sbjct: 737 LDNQQAIDLLIKQLKKTKSNAEFLMQVASSAPMAGSENDE 776 Score = 42.7 bits (99), Expect = 0.14 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Query: 28 DVKATAATVSLGSLSTMVLPELRALANQAGVKGTSGMRKSELIAAIEECR--GQANGTSV 85 D TAA + G L+ + LPELR +A + G++G S +RK +LI AI R G + Sbjct: 62 DTDNTAA--NQGDLTALRLPELRKIAGELGLRGVSALRKGDLINAIATARSGGSPAQPTQ 119 Query: 86 NDGPSRD 92 GP++D Sbjct: 120 QAGPAKD 126 >tr|C8NKZ7|C8NKZ7_COREF Tax_Id=196164 (rho)SubName: Full=Transcription termination factor Rho;[Corynebacterium efficiens YS-314] Length = 736 Score = 580 bits (1496), Expect = e-163 Identities = 304/400 (76%), Positives = 344/400 (86%), Gaps = 11/400 (2%) Query: 222 EAELRQDDVVQPVAGILDVLD-NYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGA 280 + + + DD +Q VAGILD++D N AFVRT+GY P DV+V+ ++R+ GLR GDA+ G Sbjct: 334 QGDNQNDDQLQNVAGILDIVDTNVAFVRTTGYHPAPSDVFVNNQLIRRMGLRSGDAIVGQ 393 Query: 281 VRVPREGEQG--------HQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLR 332 VR+ + G QG RQK+N LVR+++ING VE+A+ RPEF KLTPLYPNQRLR Sbjct: 394 VRMNQGGNQGGRQGGHGGRNRQKYNNLVRVETINGLPVEEARNRPEFNKLTPLYPNQRLR 453 Query: 333 LETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLV 392 LET P LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQ+IANAI NN EC+LMVVLV Sbjct: 454 LETEPKILTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNNPECYLMVVLV 513 Query: 393 DERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITR 452 DERPEEVTDMQRSVKGEVIASTFDRPPS+HT+VAELAIERAKRLVEQG+DVVVLLDSITR Sbjct: 514 DERPEEVTDMQRSVKGEVIASTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITR 573 Query: 453 LGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDM 512 LGRAYNN+SPASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIATAMVETGS GD Sbjct: 574 LGRAYNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDT 633 Query: 513 VIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSG 572 VIFEEFKGTGNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLL+PDE I+HKLRR+LS Sbjct: 634 VIFEEFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLNPDEARIMHKLRRILSA 693 Query: 573 LDSHQAIDLLMSQLRKTKTNYEFLVQVSKTTP--GSMDDD 610 LD+ QAIDLL+ QL+KTK+N EFL+QV+ + P GS +D+ Sbjct: 694 LDNQQAIDLLIKQLKKTKSNAEFLMQVASSAPMAGSENDE 733 Score = 42.7 bits (99), Expect = 0.14 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Query: 28 DVKATAATVSLGSLSTMVLPELRALANQAGVKGTSGMRKSELIAAIEECR--GQANGTSV 85 D TAA + G L+ + LPELR +A + G++G S +RK +LI AI R G + Sbjct: 19 DTDNTAA--NQGDLTALRLPELRKIAGELGLRGVSALRKGDLINAIATARSGGSPAQPTQ 76 Query: 86 NDGPSRD 92 GP++D Sbjct: 77 QAGPAKD 83 >tr|C4DMQ6|C4DMQ6_9ACTO Tax_Id=446470 SubName: Full=Transcription termination factor Rho;[Stackebrandtia nassauensis DSM 44728] Length = 629 Score = 577 bits (1486), Expect = e-162 Identities = 290/393 (73%), Positives = 341/393 (86%), Gaps = 6/393 (1%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E ++ +DDV+ PVAGI+D+LDNYAF+RT+GYLAGP DVYVSMS VRK GLRRGDAVTG V Sbjct: 237 EPQVNEDDVLVPVAGIVDILDNYAFLRTTGYLAGPTDVYVSMSQVRKYGLRRGDAVTGMV 296 Query: 282 RVPREGEQGH------QRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLET 335 + PRE + G+ +R+K+NPL+RLD++NG E A+KRP+F KLTPLYP QRLRLET Sbjct: 297 KAPREDDGGNNNNGGKRREKYNPLMRLDTVNGTEPEQARKRPDFYKLTPLYPQQRLRLET 356 Query: 336 TPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDER 395 +TTR+IDL+ PIGKGQRALIVSPPKAGKT +LQ IANAIT NN ECHLMVVLVDER Sbjct: 357 EAHLMTTRIIDLVTPIGKGQRALIVSPPKAGKTMVLQAIANAITANNPECHLMVVLVDER 416 Query: 396 PEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGR 455 PEEVTDMQRSVKGEVI+STFDR PSDHT+VAEL+IERAKRLVE G DVVVLLDSITRLGR Sbjct: 417 PEEVTDMQRSVKGEVISSTFDRHPSDHTTVAELSIERAKRLVELGHDVVVLLDSITRLGR 476 Query: 456 AYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIF 515 AYNNA+PASGRILSGG+DSTALYPPK+FLGAARNIE GGSLTIIATA+VETGS GD VI+ Sbjct: 477 AYNNATPASGRILSGGIDSTALYPPKKFLGAARNIENGGSLTIIATALVETGSMGDTVIY 536 Query: 516 EEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDS 575 EEFKGTGN+EL LDRKIAE+R++PAVDV+ S TRKD+L++ PDE I+ KLRRVLS L+S Sbjct: 537 EEFKGTGNSELHLDRKIAEKRIYPAVDVDRSSTRKDDLMMGPDEAAIMVKLRRVLSSLES 596 Query: 576 HQAIDLLMSQLRKTKTNYEFLVQVSKTTPGSMD 608 Q I+LL+ +L+K+ TN EFL+ ++K+TPG+ D Sbjct: 597 QQGIELLLDRLKKSSTNAEFLMNIAKSTPGNSD 629 Score = 40.4 bits (93), Expect = 0.69 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 9/61 (14%) Query: 23 TTDTPDVKATAATVSLGS--------LSTMVLPELRALANQAGVKGTSGMRKSELIAAIE 74 T TP+ + A+T S G+ +++M++PEL+ LAN G+ MRKSELI AI+ Sbjct: 5 TGTTPETEPGAST-STGTRRRRGGSGMASMLMPELQQLANSLGIPSIGRMRKSELITAIQ 63 Query: 75 E 75 + Sbjct: 64 D 64 >tr|B5HMS3|B5HMS3_9ACTO Tax_Id=463191 SubName: Full=Transcription termination factor Rho;[Streptomyces sviceus ATCC 29083] Length = 680 Score = 576 bits (1485), Expect = e-162 Identities = 289/383 (75%), Positives = 335/383 (87%), Gaps = 3/383 (0%) Query: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 E ++ +DDV+ PVAGILD+LDNYAF+RTSGYL GP+DVYVS++ VRKNGLR+GD +TGAV Sbjct: 295 EPQINEDDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHITGAV 354 Query: 282 RVPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 341 R P+EGE+ R+KFN LVRLDS+NG + E + RPEF KLTPLYP RLRLET P LT Sbjct: 355 RQPKEGER---REKFNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETDPGVLT 411 Query: 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTD 401 TR+IDL+ PIGKGQR LIV+PPK GKT I+Q IANAIT NN ECHLMVVLVDERPEEVTD Sbjct: 412 TRIIDLVAPIGKGQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTD 471 Query: 402 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 461 MQRSVKGEVI+STFDRP DHT+VAELAIERAKRLVE G DVVVLLDSITRLGRAYN A+ Sbjct: 472 MQRSVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAA 531 Query: 462 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGT 521 PASGRILSGGVDSTALYPPKRF GAARNIE+GGSLTI+ATA+V+TGS D VIFEEFKGT Sbjct: 532 PASGRILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGT 591 Query: 522 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 581 GNAELKLDRK+A++R+FPAVDV+ SGTRK+E+LL+PDE GIV KLRRVL LD QA++L Sbjct: 592 GNAELKLDRKLADKRIFPAVDVDASGTRKEEILLAPDELGIVWKLRRVLHALDQQQAVEL 651 Query: 582 LMSQLRKTKTNYEFLVQVSKTTP 604 L+ ++++TK+N EFL+Q+ KTTP Sbjct: 652 LLDKMKQTKSNAEFLMQIQKTTP 674 Score = 45.1 bits (105), Expect = 0.028 Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 12/92 (13%) Query: 13 TDDTELTNAVTTDT---PDVKATAATVSLGS-------LSTMVLPELRALANQAGVKGTS 62 +D T+L A +T P A+A GS L MVL EL+ +A+ G+KGT+ Sbjct: 2 SDTTDLMGARVEETAAAPSTDASAPATGAGSRRRRGTGLDGMVLAELQQVASGLGIKGTA 61 Query: 63 GMRKSELIAAIEECR--GQANGTSVNDGPSRD 92 MRKS+LI I+E + G A P+ D Sbjct: 62 RMRKSQLIEVIKEAQAGGGAAAPKAASSPAGD 93 >tr|C5VE12|C5VE12_9CORY Tax_Id=553207 (rho)SubName: Full=Transcription termination factor Rho;[Corynebacterium matruchotii ATCC 14266] Length = 660 Score = 576 bits (1484), Expect = e-162 Identities = 300/380 (78%), Positives = 334/380 (87%), Gaps = 6/380 (1%) Query: 227 QDDVVQPVAGILDVLDN-YAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPR 285 +DD +Q VAGILDV+DN AFVRTSGY AGP DVYV+ MVR+ GLR GDA+TG+VR+ Sbjct: 270 RDDQLQVVAGILDVVDNNVAFVRTSGYHAGPADVYVNSQMVRRLGLRSGDAITGSVRMTD 329 Query: 286 EGEQ-----GHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRL 340 ++ G RQK+NPL R+DS+NG +VE+AK RPEF KLTPLYPNQR+RLET P L Sbjct: 330 TNDRYNNNRGRNRQKYNPLARVDSVNGMTVEEAKNRPEFNKLTPLYPNQRIRLETEPGIL 389 Query: 341 TTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVT 400 TTRVIDLIMPIGKGQRALIVSPPKAGKTTILQ+IANAI N EC+LMVVLVDERPEEVT Sbjct: 390 TTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNRPECYLMVVLVDERPEEVT 449 Query: 401 DMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNA 460 DMQRSVKGEVIASTFDRPP++HT+VAELAIERAKRLVEQG+DVVVLLDSITRLGRAYNN+ Sbjct: 450 DMQRSVKGEVIASTFDRPPAEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRAYNNS 509 Query: 461 SPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKG 520 SPASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIATAMVETGS GD VIFEEFKG Sbjct: 510 SPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFEEFKG 569 Query: 521 TGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAID 580 TGNAELKLDRKIAERRVFPAVD+ PSGTRKDELLL+P+E ++HKLR +LS LD+ QAID Sbjct: 570 TGNAELKLDRKIAERRVFPAVDIGPSGTRKDELLLAPEEARVMHKLRGILSVLDNQQAID 629 Query: 581 LLMSQLRKTKTNYEFLVQVS 600 L++QL+K KTN EFL QV+ Sbjct: 630 TLIAQLKKYKTNGEFLAQVA 649 Score = 41.2 bits (95), Expect = 0.41 Identities = 21/41 (51%), Positives = 26/41 (63%) Query: 40 SLSTMVLPELRALANQAGVKGTSGMRKSELIAAIEECRGQA 80 +L+ M LPELR LA G+KG S +RK LIAAI G + Sbjct: 11 NLAAMRLPELRKLAADLGLKGVSALRKGALIAAITNASGDS 51 >tr|A4QDG0|A4QDG0_CORGB Tax_Id=340322 SubName: Full=Putative uncharacterized protein;[Corynebacterium glutamicum] Length = 760 Score = 574 bits (1480), Expect = e-161 Identities = 298/388 (76%), Positives = 335/388 (86%), Gaps = 5/388 (1%) Query: 222 EAELRQDDVVQPVAGILDVLD-NYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGA 280 + + Q D +Q VAGILD++D N AFVRT+GY A P DV+VS ++R+ GLR GDA+ G Sbjct: 362 DGDNNQQDELQQVAGILDIVDHNVAFVRTTGYHAAPSDVFVSNQLIRRMGLRSGDAIEGQ 421 Query: 281 VRVPREG----EQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETT 336 VR+ + G G RQK+N LVR++ +NG E+ + RPEFGKLTPLYPNQRLRLET Sbjct: 422 VRMNQGGGNHNNHGRNRQKYNNLVRVEMVNGLPAEETRNRPEFGKLTPLYPNQRLRLETE 481 Query: 337 PDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERP 396 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQ+IANAI+ NN EC+LMVVLVDERP Sbjct: 482 QKILTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAISTNNPECYLMVVLVDERP 541 Query: 397 EEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRA 456 EEVTDMQRSV GEVIASTFDRPPS+HT+VAELAIERAKRLVEQG+DVVVLLDSITRLGRA Sbjct: 542 EEVTDMQRSVNGEVIASTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRA 601 Query: 457 YNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFE 516 YNN+SPASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIATAMVETGS GD VIFE Sbjct: 602 YNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFE 661 Query: 517 EFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSH 576 EFKGTGNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLL+PDE I+HKLRR+LS LD+ Sbjct: 662 EFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLNPDEARIMHKLRRILSALDNQ 721 Query: 577 QAIDLLMSQLRKTKTNYEFLVQVSKTTP 604 QAIDLL+ QL+KTK+N EFL+QV+ + P Sbjct: 722 QAIDLLIKQLKKTKSNAEFLMQVASSAP 749 Score = 43.5 bits (101), Expect = 0.082 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 39 GSLSTMVLPELRALANQAGVKGTSGMRKSELIAAIEECR-----GQANGTSVNDGPSRDH 93 G L+ + LP+LR +A G+KGTS +RK +LI AI R A TS PSR Sbjct: 12 GELTALRLPDLRKIAADLGLKGTSALRKGDLINAISAAREGKPTAAAKKTSPRKAPSRTR 71 Query: 94 GGSATAISTEALAAQEEQNYA 114 +A +A A + + A Sbjct: 72 VTQPSAPVEQAQEAPAQTSTA 92 >tr|Q8NR58|Q8NR58_CORGL Tax_Id=1718 (rho)SubName: Full=Transcription termination factor; SubName: Full=Transcription termination factor Rho;[Corynebacterium glutamicum] Length = 762 Score = 573 bits (1477), Expect = e-161 Identities = 297/388 (76%), Positives = 335/388 (86%), Gaps = 5/388 (1%) Query: 222 EAELRQDDVVQPVAGILDVLD-NYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGA 280 + + Q D +Q VAGILD++D N AFVRT+GY A P DV+VS ++R+ GLR GDA+ G Sbjct: 364 DGDNNQQDELQQVAGILDIVDHNVAFVRTTGYHAAPSDVFVSNQLIRRMGLRSGDAIEGQ 423 Query: 281 VRVPREG----EQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETT 336 VR+ + G G RQK+N LVR++ +NG E+ + RPEFGKLTPLYPNQRLRLET Sbjct: 424 VRMNQGGGNHNNHGRNRQKYNNLVRVEMVNGLPAEETRNRPEFGKLTPLYPNQRLRLETE 483 Query: 337 PDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERP 396 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQ+IANAI+ NN EC+LMVVLVDERP Sbjct: 484 QKILTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAISTNNPECYLMVVLVDERP 543 Query: 397 EEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRA 456 EEVTDMQRSV GEVI+STFDRPPS+HT+VAELAIERAKRLVEQG+DVVVLLDSITRLGRA Sbjct: 544 EEVTDMQRSVNGEVISSTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRA 603 Query: 457 YNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFE 516 YNN+SPASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIATAMVETGS GD VIFE Sbjct: 604 YNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFE 663 Query: 517 EFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSH 576 EFKGTGNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLL+PDE I+HKLRR+LS LD+ Sbjct: 664 EFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLNPDEARIMHKLRRILSALDNQ 723 Query: 577 QAIDLLMSQLRKTKTNYEFLVQVSKTTP 604 QAIDLL+ QL+KTK+N EFL+QV+ + P Sbjct: 724 QAIDLLIKQLKKTKSNAEFLMQVASSAP 751 Score = 44.7 bits (104), Expect = 0.037 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 39 GSLSTMVLPELRALANQAGVKGTSGMRKSELIAAIEECR-----GQANGTSVNDGPSRDH 93 G L+ + LP+LR +A G+KGTS +RK +LI AI R A TS PSR Sbjct: 12 GELTALRLPDLRKIAADLGLKGTSALRKGDLINAISAAREGKPTAAAKKTSPRKAPSRTR 71 Query: 94 GGSATAISTEALAAQEEQNYA 114 +A +A A + + A Sbjct: 72 ATQPSAPVEQAQEAPAQTSTA 92 Database: Amellifera_nr Posted date: Jan 15, 2010 5:10 AM Number of letters in database: 3,808,957,724 Number of sequences in database: 11,153,314 Lambda K H 0.313 0.131 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11153314 Number of Hits to DB: 3,955,994,344 Number of extensions: 154548929 Number of successful extensions: 407587 Number of sequences better than 10.0: 15291 Number of HSP's gapped: 395446 Number of HSP's successfully gapped: 15430 Length of query: 610 Length of database: 3,808,957,724 Length adjustment: 144 Effective length of query: 466 Effective length of database: 2,202,880,508 Effective search space: 1026542316728 Effective search space used: 1026542316728 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 83 (36.6 bits)