BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ML1448 (184 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,153,314 sequences; 3,808,957,724 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|Q9CC01|Q9CC01_MYCLE Tax_Id=1769 RecName: Full=RNA polymerase ... 340 5e-92 tr|B8ZRM6|B8ZRM6_MYCLB Tax_Id=561304 RecName: Full=RNA polymeras... 340 5e-92 tr|A0QFD5|A0QFD5_MYCA1 Tax_Id=243243 RecName: Full=RNA polymeras... 273 8e-72 tr|Q73YY9|Q73YY9_MYCPA Tax_Id=1770 SubName: Full=Putative unchar... 269 1e-70 sp|P66809|RPSC_MYCTU Tax_Id=1773 (sigC)RecName: Full=Probable RN... 263 6e-69 sp|P66810|RPSC_MYCBO Tax_Id=1765 (sigC)RecName: Full=Probable RN... 263 6e-69 tr|C6DPZ7|C6DPZ7_MYCTK Tax_Id=478434 RecName: Full=RNA polymeras... 263 6e-69 tr|C1APY8|C1APY8_MYCBT Tax_Id=561275 (sigC)RecName: Full=RNA pol... 263 6e-69 tr|A5U494|A5U494_MYCTA Tax_Id=419947 (sigC)RecName: Full=RNA pol... 263 6e-69 tr|A1KKB5|A1KKB5_MYCBP Tax_Id=410289 (sigC)RecName: Full=RNA pol... 263 6e-69 tr|A5WP47|A5WP47_MYCTF Tax_Id=336982 RecName: Full=RNA polymeras... 263 6e-69 tr|A4KIK6|A4KIK6_MYCTU Tax_Id=395095 RecName: Full=RNA polymeras... 263 6e-69 tr|A2VJH5|A2VJH5_MYCTU Tax_Id=348776 RecName: Full=RNA polymeras... 263 6e-69 tr|B2HFS4|B2HFS4_MYCMM Tax_Id=216594 (sigC)RecName: Full=RNA pol... 251 3e-65 tr|A0PQQ3|A0PQQ3_MYCUA Tax_Id=362242 (sigC)RecName: Full=RNA pol... 251 3e-65 tr|B1ME35|B1ME35_MYCA9 Tax_Id=561007 RecName: Full=RNA polymeras... 188 3e-46 tr|A4FP16|A4FP16_SACEN Tax_Id=405948 (sigC)RecName: Full=RNA pol... 185 2e-45 tr|B2HKM8|B2HKM8_MYCMM Tax_Id=216594 (sigC_1)RecName: Full=RNA p... 182 1e-44 tr|A0PWN1|A0PWN1_MYCUA Tax_Id=362242 (sigC_1)RecName: Full=RNA p... 182 1e-44 tr|C6WP37|C6WP37_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras... 169 1e-40 tr|C0WHW8|C0WHW8_9CORY Tax_Id=525260 SubName: Full=ECF family DN... 158 3e-37 tr|C2BKS5|C2BKS5_9CORY Tax_Id=525264 SubName: Full=RNA polymeras... 157 5e-37 tr|A4X831|A4X831_SALTO Tax_Id=369723 RecName: Full=RNA polymeras... 156 1e-36 tr|B1W4P0|B1W4P0_STRGG Tax_Id=455632 RecName: Full=RNA polymeras... 155 2e-36 tr|A8M5Q2|A8M5Q2_SALAI Tax_Id=391037 RecName: Full=RNA polymeras... 154 3e-36 tr|C6R7L0|C6R7L0_9CORY Tax_Id=553206 SubName: Full=RNA polymeras... 154 4e-36 tr|C4RBD5|C4RBD5_9ACTO Tax_Id=219305 SubName: Full=Sigma-70 regi... 154 4e-36 tr|C4ERJ2|C4ERJ2_STRRS Tax_Id=479432 RecName: Full=RNA polymeras... 153 7e-36 tr|Q9RCU5|Q9RCU5_STRCO Tax_Id=1902 SubName: Full=Probable ECF-fa... 153 9e-36 tr|Q9RCU7|Q9RCU7_STRCO Tax_Id=1902 SubName: Full=Probable ECF-fa... 152 1e-35 tr|C2GJD6|C2GJD6_9CORY Tax_Id=548478 SubName: Full=RNA polymeras... 150 8e-35 tr|C2CS81|C2CS81_CORST Tax_Id=525268 SubName: Full=ECF family DN... 150 8e-35 tr|C0VRJ6|C0VRJ6_9CORY Tax_Id=548477 SubName: Full=RNA polymeras... 150 8e-35 tr|C9Z3X6|C9Z3X6_STRSW Tax_Id=680198 SubName: Full=Putative sigm... 149 1e-34 tr|Q82PK4|Q82PK4_STRAW Tax_Id=33903 (sig10)RecName: Full=RNA pol... 149 1e-34 tr|B5GY45|B5GY45_STRCL Tax_Id=443255 RecName: Full=RNA polymeras... 149 1e-34 tr|Q848B1|Q848B1_STRHY Tax_Id=1912 (gdnS)SubName: Full=Putative ... 149 2e-34 tr|A3KIE8|A3KIE8_STRAM Tax_Id=278992 RecName: Full=RNA polymeras... 148 2e-34 tr|Q8FTZ9|Q8FTZ9_COREF Tax_Id=152794 SubName: Full=Putative RNA ... 148 3e-34 tr|C8NR78|C8NR78_COREF Tax_Id=196164 (sigC)SubName: Full=RNA pol... 148 3e-34 tr|A4QAP8|A4QAP8_CORGB Tax_Id=340322 SubName: Full=Putative unch... 147 4e-34 tr|C4LGM1|C4LGM1_CORK4 Tax_Id=645127 (sigC)RecName: Full=RNA pol... 147 5e-34 tr|C3PJS1|C3PJS1_CORA7 Tax_Id=548476 (sigC)SubName: Full=ECF-fam... 147 5e-34 tr|B5HT54|B5HT54_9ACTO Tax_Id=463191 RecName: Full=RNA polymeras... 147 5e-34 tr|C0XU56|C0XU56_9CORY Tax_Id=525263 SubName: Full=RNA polymeras... 147 7e-34 tr|Q8NTQ2|Q8NTQ2_CORGL Tax_Id=1718 (sigC)SubName: Full=DNA-direc... 145 2e-33 tr|C9N8C8|C9N8C8_9ACTO Tax_Id=591167 SubName: Full=RNA polymeras... 145 2e-33 tr|C4DT70|C4DT70_9ACTO Tax_Id=446470 RecName: Full=RNA polymeras... 144 4e-33 tr|Q4JSN0|Q4JSN0_CORJK Tax_Id=306537 (sigC)SubName: Full=ECF-fam... 144 6e-33 tr|C0U6T9|C0U6T9_9ACTO Tax_Id=526225 RecName: Full=RNA polymeras... 144 6e-33 >tr|Q9CC01|Q9CC01_MYCLE Tax_Id=1769 RecName: Full=RNA polymerase sigma factor;[Mycobacterium leprae] Length = 184 Score = 340 bits (871), Expect = 5e-92 Identities = 174/184 (94%), Positives = 174/184 (94%) Query: 1 MIASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRA 60 MIASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRA Sbjct: 1 MIASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRA 60 Query: 61 IGAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDL 120 IGAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDL Sbjct: 61 IGAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDL 120 Query: 121 VEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEHN 180 VEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV TEHN Sbjct: 121 VEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVARARDALLADTEHN 180 Query: 181 HLTG 184 HLTG Sbjct: 181 HLTG 184 >tr|B8ZRM6|B8ZRM6_MYCLB Tax_Id=561304 RecName: Full=RNA polymerase sigma factor;[Mycobacterium leprae] Length = 184 Score = 340 bits (871), Expect = 5e-92 Identities = 174/184 (94%), Positives = 174/184 (94%) Query: 1 MIASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRA 60 MIASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRA Sbjct: 1 MIASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRA 60 Query: 61 IGAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDL 120 IGAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDL Sbjct: 61 IGAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDL 120 Query: 121 VEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEHN 180 VEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV TEHN Sbjct: 121 VEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVARARDALLADTEHN 180 Query: 181 HLTG 184 HLTG Sbjct: 181 HLTG 184 >tr|A0QFD5|A0QFD5_MYCA1 Tax_Id=243243 RecName: Full=RNA polymerase sigma factor;[Mycobacterium avium] Length = 401 Score = 273 bits (697), Expect = 8e-72 Identities = 143/184 (77%), Positives = 150/184 (81%) Query: 1 MIASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRA 60 MIA S DEAVT+LAL+AARG+ RALEAFIKATQQDVWRFVAYL D G+ADDLTQETFLRA Sbjct: 218 MIAPSDDEAVTELALSAARGNARALEAFIKATQQDVWRFVAYLCDAGSADDLTQETFLRA 277 Query: 61 IGAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDL 120 IGAIERFSG SS RTWLL+IARRVVADHIR Q+RPR PE +L DRHARGFEDL Sbjct: 278 IGAIERFSGRSSARTWLLSIARRVVADHIRHLQSRPRAAVGADPEHVLRTDRHARGFEDL 337 Query: 121 VEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEHN 180 VEVTTMIA L EQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV E N Sbjct: 338 VEVTTMIAGLNPEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVARARDALLADGERN 397 Query: 181 HLTG 184 LTG Sbjct: 398 DLTG 401 >tr|Q73YY9|Q73YY9_MYCPA Tax_Id=1770 SubName: Full=Putative uncharacterized protein;[Mycobacterium paratuberculosis] Length = 459 Score = 269 bits (687), Expect = 1e-70 Identities = 141/184 (76%), Positives = 150/184 (81%) Query: 1 MIASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRA 60 MIA S DEAVT+LAL+AARG+ RALEAFIKATQQDVWRFVAYL D G+ADDL QETFLRA Sbjct: 276 MIAPSDDEAVTELALSAARGNARALEAFIKATQQDVWRFVAYLCDAGSADDLPQETFLRA 335 Query: 61 IGAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDL 120 IGAIERFSG SS RTWLL+IARRVVADHIR Q+RPR PE +L DRHARGFEDL Sbjct: 336 IGAIERFSGRSSARTWLLSIARRVVADHIRHLQSRPRAAVGADPEHVLRTDRHARGFEDL 395 Query: 121 VEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEHN 180 VEVTTMIA+L EQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV E + Sbjct: 396 VEVTTMIASLNPEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVARARDALLADGERS 455 Query: 181 HLTG 184 LTG Sbjct: 456 DLTG 459 >sp|P66809|RPSC_MYCTU Tax_Id=1773 (sigC)RecName: Full=Probable RNA polymerase sigma-C factor;[Mycobacterium tuberculosis] Length = 185 Score = 263 bits (672), Expect = 6e-69 Identities = 137/181 (75%), Positives = 150/181 (82%) Query: 4 SSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGA 63 +S DEAVT LAL+AA+G+ RALEAFIKATQQDVWRFVAYLSDVG+ADDLTQETFLRAIGA Sbjct: 5 ASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGA 64 Query: 64 IERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEV 123 I RFS SS RTWLLAIAR VVADHIR ++RPRTT PE +++ DRHARGFEDLVEV Sbjct: 65 IPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEV 124 Query: 124 TTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEHNHLT 183 TTMIA+L T+QREALLLTQLLGL YADAAAVCGCPVGTIRSRV E + LT Sbjct: 125 TTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLT 184 Query: 184 G 184 G Sbjct: 185 G 185 >sp|P66810|RPSC_MYCBO Tax_Id=1765 (sigC)RecName: Full=Probable RNA polymerase sigma-C factor;[Mycobacterium bovis] Length = 185 Score = 263 bits (672), Expect = 6e-69 Identities = 137/181 (75%), Positives = 150/181 (82%) Query: 4 SSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGA 63 +S DEAVT LAL+AA+G+ RALEAFIKATQQDVWRFVAYLSDVG+ADDLTQETFLRAIGA Sbjct: 5 ASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGA 64 Query: 64 IERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEV 123 I RFS SS RTWLLAIAR VVADHIR ++RPRTT PE +++ DRHARGFEDLVEV Sbjct: 65 IPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEV 124 Query: 124 TTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEHNHLT 183 TTMIA+L T+QREALLLTQLLGL YADAAAVCGCPVGTIRSRV E + LT Sbjct: 125 TTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLT 184 Query: 184 G 184 G Sbjct: 185 G 185 >tr|C6DPZ7|C6DPZ7_MYCTK Tax_Id=478434 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 311 Score = 263 bits (672), Expect = 6e-69 Identities = 137/181 (75%), Positives = 150/181 (82%) Query: 4 SSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGA 63 +S DEAVT LAL+AA+G+ RALEAFIKATQQDVWRFVAYLSDVG+ADDLTQETFLRAIGA Sbjct: 131 ASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGA 190 Query: 64 IERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEV 123 I RFS SS RTWLLAIAR VVADHIR ++RPRTT PE +++ DRHARGFEDLVEV Sbjct: 191 IPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEV 250 Query: 124 TTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEHNHLT 183 TTMIA+L T+QREALLLTQLLGL YADAAAVCGCPVGTIRSRV E + LT Sbjct: 251 TTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLT 310 Query: 184 G 184 G Sbjct: 311 G 311 >tr|C1APY8|C1APY8_MYCBT Tax_Id=561275 (sigC)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 185 Score = 263 bits (672), Expect = 6e-69 Identities = 137/181 (75%), Positives = 150/181 (82%) Query: 4 SSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGA 63 +S DEAVT LAL+AA+G+ RALEAFIKATQQDVWRFVAYLSDVG+ADDLTQETFLRAIGA Sbjct: 5 ASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGA 64 Query: 64 IERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEV 123 I RFS SS RTWLLAIAR VVADHIR ++RPRTT PE +++ DRHARGFEDLVEV Sbjct: 65 IPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEV 124 Query: 124 TTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEHNHLT 183 TTMIA+L T+QREALLLTQLLGL YADAAAVCGCPVGTIRSRV E + LT Sbjct: 125 TTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLT 184 Query: 184 G 184 G Sbjct: 185 G 185 >tr|A5U494|A5U494_MYCTA Tax_Id=419947 (sigC)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 185 Score = 263 bits (672), Expect = 6e-69 Identities = 137/181 (75%), Positives = 150/181 (82%) Query: 4 SSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGA 63 +S DEAVT LAL+AA+G+ RALEAFIKATQQDVWRFVAYLSDVG+ADDLTQETFLRAIGA Sbjct: 5 ASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGA 64 Query: 64 IERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEV 123 I RFS SS RTWLLAIAR VVADHIR ++RPRTT PE +++ DRHARGFEDLVEV Sbjct: 65 IPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEV 124 Query: 124 TTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEHNHLT 183 TTMIA+L T+QREALLLTQLLGL YADAAAVCGCPVGTIRSRV E + LT Sbjct: 125 TTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLT 184 Query: 184 G 184 G Sbjct: 185 G 185 >tr|A1KKB5|A1KKB5_MYCBP Tax_Id=410289 (sigC)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 185 Score = 263 bits (672), Expect = 6e-69 Identities = 137/181 (75%), Positives = 150/181 (82%) Query: 4 SSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGA 63 +S DEAVT LAL+AA+G+ RALEAFIKATQQDVWRFVAYLSDVG+ADDLTQETFLRAIGA Sbjct: 5 ASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGA 64 Query: 64 IERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEV 123 I RFS SS RTWLLAIAR VVADHIR ++RPRTT PE +++ DRHARGFEDLVEV Sbjct: 65 IPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEV 124 Query: 124 TTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEHNHLT 183 TTMIA+L T+QREALLLTQLLGL YADAAAVCGCPVGTIRSRV E + LT Sbjct: 125 TTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLT 184 Query: 184 G 184 G Sbjct: 185 G 185 >tr|A5WP47|A5WP47_MYCTF Tax_Id=336982 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 311 Score = 263 bits (672), Expect = 6e-69 Identities = 137/181 (75%), Positives = 150/181 (82%) Query: 4 SSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGA 63 +S DEAVT LAL+AA+G+ RALEAFIKATQQDVWRFVAYLSDVG+ADDLTQETFLRAIGA Sbjct: 131 ASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGA 190 Query: 64 IERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEV 123 I RFS SS RTWLLAIAR VVADHIR ++RPRTT PE +++ DRHARGFEDLVEV Sbjct: 191 IPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEV 250 Query: 124 TTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEHNHLT 183 TTMIA+L T+QREALLLTQLLGL YADAAAVCGCPVGTIRSRV E + LT Sbjct: 251 TTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLT 310 Query: 184 G 184 G Sbjct: 311 G 311 >tr|A4KIK6|A4KIK6_MYCTU Tax_Id=395095 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis str. Haarlem] Length = 222 Score = 263 bits (672), Expect = 6e-69 Identities = 137/181 (75%), Positives = 150/181 (82%) Query: 4 SSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGA 63 +S DEAVT LAL+AA+G+ RALEAFIKATQQDVWRFVAYLSDVG+ADDLTQETFLRAIGA Sbjct: 42 ASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGA 101 Query: 64 IERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEV 123 I RFS SS RTWLLAIAR VVADHIR ++RPRTT PE +++ DRHARGFEDLVEV Sbjct: 102 IPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEV 161 Query: 124 TTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEHNHLT 183 TTMIA+L T+QREALLLTQLLGL YADAAAVCGCPVGTIRSRV E + LT Sbjct: 162 TTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLT 221 Query: 184 G 184 G Sbjct: 222 G 222 >tr|A2VJH5|A2VJH5_MYCTU Tax_Id=348776 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis C] Length = 222 Score = 263 bits (672), Expect = 6e-69 Identities = 137/181 (75%), Positives = 150/181 (82%) Query: 4 SSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGA 63 +S DEAVT LAL+AA+G+ RALEAFIKATQQDVWRFVAYLSDVG+ADDLTQETFLRAIGA Sbjct: 42 ASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGA 101 Query: 64 IERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEV 123 I RFS SS RTWLLAIAR VVADHIR ++RPRTT PE +++ DRHARGFEDLVEV Sbjct: 102 IPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEV 161 Query: 124 TTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEHNHLT 183 TTMIA+L T+QREALLLTQLLGL YADAAAVCGCPVGTIRSRV E + LT Sbjct: 162 TTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLT 221 Query: 184 G 184 G Sbjct: 222 G 222 >tr|B2HFS4|B2HFS4_MYCMM Tax_Id=216594 (sigC)RecName: Full=RNA polymerase sigma factor;[Mycobacterium marinum] Length = 184 Score = 251 bits (640), Expect = 3e-65 Identities = 134/184 (72%), Positives = 140/184 (76%) Query: 1 MIASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRA 60 M S DEAVT LALAAA G RA EAFIKATQQDVWRFVAYLSD G+ADDLTQETFLRA Sbjct: 1 MTTSPDDEAVTALALAAADGDARAFEAFIKATQQDVWRFVAYLSDAGSADDLTQETFLRA 60 Query: 61 IGAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDL 120 IGAI RF G SS RTWLLAIARRVVADHIR Q RPR PE +L+ R ARGFEDL Sbjct: 61 IGAIRRFGGRSSARTWLLAIARRVVADHIRHLQARPRAAHGVDPELLLDRGRRARGFEDL 120 Query: 121 VEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEHN 180 VEVTTMIA L ++QREALLLTQLLGL Y DAAAVCGCPVGTIRSRV E + Sbjct: 121 VEVTTMIAQLTSDQREALLLTQLLGLSYTDAAAVCGCPVGTIRSRVARARDALLADNERD 180 Query: 181 HLTG 184 LTG Sbjct: 181 DLTG 184 >tr|A0PQQ3|A0PQQ3_MYCUA Tax_Id=362242 (sigC)RecName: Full=RNA polymerase sigma factor;[Mycobacterium ulcerans] Length = 186 Score = 251 bits (640), Expect = 3e-65 Identities = 134/184 (72%), Positives = 140/184 (76%) Query: 1 MIASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRA 60 M S DEAVT LALAAA G RA EAFIKATQQDVWRFVAYLSD G+ADDLTQETFLRA Sbjct: 3 MTTSPDDEAVTALALAAADGDARAFEAFIKATQQDVWRFVAYLSDAGSADDLTQETFLRA 62 Query: 61 IGAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDL 120 IGAI RF G SS RTWLLAIARRVVADHIR Q RPR PE +L+ R ARGFEDL Sbjct: 63 IGAIRRFGGRSSARTWLLAIARRVVADHIRHLQARPRAAHGVDPELLLDRGRRARGFEDL 122 Query: 121 VEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEHN 180 VEVTTMIA L ++QREALLLTQLLGL Y DAAAVCGCPVGTIRSRV E + Sbjct: 123 VEVTTMIAQLTSDQREALLLTQLLGLSYTDAAAVCGCPVGTIRSRVARARDALLADNERD 182 Query: 181 HLTG 184 LTG Sbjct: 183 DLTG 186 >tr|B1ME35|B1ME35_MYCA9 Tax_Id=561007 RecName: Full=RNA polymerase sigma factor;[Mycobacterium abscessus] Length = 183 Score = 188 bits (477), Expect = 3e-46 Identities = 99/184 (53%), Positives = 129/184 (70%), Gaps = 1/184 (0%) Query: 1 MIASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRA 60 M + DE + +LAL+A RG + ALE+ +KATQ DVWRFVAYL+D G ADDLTQET+LRA Sbjct: 1 MATGTDDEQLLELALSAGRGDQSALESLVKATQGDVWRFVAYLADSGVADDLTQETYLRA 60 Query: 61 IGAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDL 120 +GA+ RF+G S+ RTWLL+IARRVVADHIR ++RPR G + R FE+L Sbjct: 61 LGALPRFAGRSTVRTWLLSIARRVVADHIRHLKSRPRIA-HGADLEEASLRRPTHRFEEL 119 Query: 121 VEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEHN 180 VE+ +++A L ++REAL+LTQ++GL YA+ A VCGC +GTIRSRV E Sbjct: 120 VELKSLLAALDDDRREALVLTQVVGLSYAETADVCGCAIGTIRSRVARARDELIGWAEPE 179 Query: 181 HLTG 184 +LTG Sbjct: 180 NLTG 183 >tr|A4FP16|A4FP16_SACEN Tax_Id=405948 (sigC)RecName: Full=RNA polymerase sigma factor;[Saccharopolyspora erythraea] Length = 184 Score = 185 bits (469), Expect = 2e-45 Identities = 95/167 (56%), Positives = 126/167 (75%), Gaps = 3/167 (1%) Query: 1 MIASSGDEA-VTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLR 59 M S+ D+A +T+LALAA G +RALE FI+ATQ+DVWRFVA+L+ V ADDL QET++R Sbjct: 1 MSRSAADDAWLTELALAAGTGDRRALEEFIRATQRDVWRFVAHLASVEQADDLAQETYVR 60 Query: 60 AIGAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFED 119 + ++ RF+G +S RTWLL+IARRVV D +R A++RPRTT E A+R A GFED Sbjct: 61 VLRSLPRFAGRASARTWLLSIARRVVVDQVRYARSRPRTT--AAVEWATAAERPAPGFED 118 Query: 120 LVEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 +VE+ ++A L ++RE LLLTQ+LGL Y + A +CGCPVGT+RSRV Sbjct: 119 IVELNMLLAGLDEQRREVLLLTQVLGLSYQETADICGCPVGTVRSRV 165 >tr|B2HKM8|B2HKM8_MYCMM Tax_Id=216594 (sigC_1)RecName: Full=RNA polymerase sigma factor;[Mycobacterium marinum] Length = 184 Score = 182 bits (462), Expect = 1e-44 Identities = 93/166 (56%), Positives = 115/166 (69%) Query: 1 MIASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRA 60 M+ DE +T LA+AA RG + AL FI+ATQ+DVWR VAYLSD ADDLTQETFLRA Sbjct: 1 MVTGGADEQITVLAMAAGRGDRAALAEFIEATQRDVWRLVAYLSDPACADDLTQETFLRA 60 Query: 61 IGAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDL 120 IGA+ RF+G S+ RTWL +IARRVV D IR RPR + L R FED+ Sbjct: 61 IGALPRFAGRSNARTWLFSIARRVVVDQIRYKTRRPRPAYVADLGEALGQARRGSRFEDI 120 Query: 121 VEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 VE+ ++ L ++REAL+ TQ+LGL YA+AA +CG P+GTIRSRV Sbjct: 121 VEIRLLLDGLDEKRREALIFTQVLGLSYAEAAQICGSPIGTIRSRV 166 >tr|A0PWN1|A0PWN1_MYCUA Tax_Id=362242 (sigC_1)RecName: Full=RNA polymerase sigma factor;[Mycobacterium ulcerans] Length = 184 Score = 182 bits (462), Expect = 1e-44 Identities = 93/166 (56%), Positives = 115/166 (69%) Query: 1 MIASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRA 60 M+ DE +T LA+AA RG + AL FI+ATQ+DVWR VAYLSD ADDLTQETFLRA Sbjct: 1 MVTGGADEQITVLAMAAGRGDRAALAEFIEATQRDVWRLVAYLSDPACADDLTQETFLRA 60 Query: 61 IGAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDL 120 IGA+ RF+G S+ RTWL +IARRVV D IR RPR + L R FED+ Sbjct: 61 IGALPRFAGRSNARTWLFSIARRVVVDQIRYKTRRPRPAYVADLGEALGQARRGSRFEDI 120 Query: 121 VEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 VE+ ++ L ++REAL+ TQ+LGL YA+AA +CG P+GTIRSRV Sbjct: 121 VEIRLLLDGLDEKRREALIFTQVLGLSYAEAAQICGSPIGTIRSRV 166 >tr|C6WP37|C6WP37_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Actinosynnema mirum] Length = 192 Score = 169 bits (428), Expect = 1e-40 Identities = 88/160 (55%), Positives = 114/160 (71%) Query: 7 DEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIER 66 D+ VT AL A G + ALE F++ TQ+DVWRF A+L+ V ADDL+QET+ RA+ ++ R Sbjct: 13 DDEVTRWALRARSGDRNALEQFVRGTQRDVWRFTAHLAGVDVADDLSQETYARALTSLHR 72 Query: 67 FSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEVTTM 126 F+G SS RTWLL IARRVV D +R AQ+RPR + R + A GFED VE+ + Sbjct: 73 FAGRSSARTWLLVIARRVVVDQVRMAQSRPRLSPGADWVREADRRPAATGFEDAVELNLL 132 Query: 127 IANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 + +L ++REAL+LTQ+LGL YA+AA V GCPVGTIRSRV Sbjct: 133 LDSLDQDRREALVLTQVLGLSYAEAADVAGCPVGTIRSRV 172 >tr|C0WHW8|C0WHW8_9CORY Tax_Id=525260 SubName: Full=ECF family DNA-directed RNA polymerase sigma subunit SigY;[Corynebacterium accolens ATCC 49725] Length = 180 Score = 158 bits (399), Expect = 3e-37 Identities = 82/164 (50%), Positives = 110/164 (67%) Query: 3 ASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIG 62 +++ D VT+LAL A RG + AL FIKATQ DVWR +A+L ADDLTQET+LR IG Sbjct: 5 SAADDARVTELALRAGRGDRAALTEFIKATQDDVWRLLAHLGGPEIADDLTQETYLRVIG 64 Query: 63 AIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVE 122 A+ RF+ SS RTWLL++ARRV D+IR RPR + Y + M +A ++ + D ++ Sbjct: 65 ALPRFAARSSARTWLLSLARRVWVDNIRHDMARPRKSATQYEDAMSSAAENSGSWSDWID 124 Query: 123 VTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 +I L ++REAL+LTQ+LG Y +AA + G VGTIRSRV Sbjct: 125 ARALIDALPADRREALILTQVLGYTYEEAAKIAGVRVGTIRSRV 168 >tr|C2BKS5|C2BKS5_9CORY Tax_Id=525264 SubName: Full=RNA polymerase sigma factor;[Corynebacterium pseudogenitalium ATCC 33035] Length = 180 Score = 157 bits (397), Expect = 5e-37 Identities = 82/164 (50%), Positives = 108/164 (65%) Query: 3 ASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIG 62 +++ D VTDLAL A RG + AL FIKATQ DVWR +A+L ADDLTQET+LR I Sbjct: 5 SAADDARVTDLALRAGRGDRAALTEFIKATQDDVWRLLAHLGGPEGADDLTQETYLRVIS 64 Query: 63 AIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVE 122 A+ RF+ SS RTWLL++ARRV D+IR RPR + Y + M A + + + ++ Sbjct: 65 ALPRFAARSSARTWLLSLARRVWVDNIRHDMARPRKSATEYEDAMGAAPEESAAWSEWID 124 Query: 123 VTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 T+I L ++REAL+LTQ+LG Y +AA + G VGTIRSRV Sbjct: 125 ARTLIDALPADRREALILTQVLGYTYEEAAKIAGVRVGTIRSRV 168 >tr|A4X831|A4X831_SALTO Tax_Id=369723 RecName: Full=RNA polymerase sigma factor;[Salinispora tropica] Length = 216 Score = 156 bits (394), Expect = 1e-36 Identities = 86/160 (53%), Positives = 107/160 (66%), Gaps = 4/160 (2%) Query: 7 DEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIER 66 D VT AL A RG + A AFI+ATQQ V RF+A L ADDLTQET+LRA+ ++ Sbjct: 36 DTDVTSWALDAGRGDQAAAAAFIRATQQQVRRFLAALISPAEADDLTQETYLRALRSLPS 95 Query: 67 FSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEVTTM 126 F+G SS RTWL +IARRV DH+R A +RPRT P + GF+ V + + Sbjct: 96 FAGRSSARTWLFSIARRVAVDHVRAATSRPRTV----PMTDSHDVADESGFDRQVALEQI 151 Query: 127 IANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 IA L T++REA ++TQ+LGL YA+AA VCGCPVGTIRSRV Sbjct: 152 IAALPTDRREAFVVTQVLGLSYAEAAQVCGCPVGTIRSRV 191 >tr|B1W4P0|B1W4P0_STRGG Tax_Id=455632 RecName: Full=RNA polymerase sigma factor;[Streptomyces griseus subsp. griseus] Length = 230 Score = 155 bits (392), Expect = 2e-36 Identities = 86/167 (51%), Positives = 106/167 (63%), Gaps = 3/167 (1%) Query: 3 ASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLS-DVGNADDLTQETFLRAI 61 A D +TD ALAA G + A + F++AT +DV RFVAYLS DV ADDL QET+LRA+ Sbjct: 37 ARQNDGQITDWALAAGGGDREAADRFVRATYEDVRRFVAYLSSDVPGADDLAQETYLRAM 96 Query: 62 GAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRT--TFDGYPERMLNADRHARGFED 119 + RF G S RTWL++IARRVV D R A RPRT T D RH GFE+ Sbjct: 97 SGLARFGGRSCARTWLMSIARRVVIDRHRAAAVRPRTADTADWQTAAERAQPRHLPGFEE 156 Query: 120 LVEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 V V + L +R+A +LTQLLG+ Y +AAA GCP+GT+RSRV Sbjct: 157 SVAVLDALRRLDPARRQAFVLTQLLGVSYEEAAAAAGCPIGTVRSRV 203 >tr|A8M5Q2|A8M5Q2_SALAI Tax_Id=391037 RecName: Full=RNA polymerase sigma factor;[Salinispora arenicola] Length = 188 Score = 154 bits (390), Expect = 3e-36 Identities = 84/160 (52%), Positives = 107/160 (66%), Gaps = 2/160 (1%) Query: 7 DEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIER 66 D VT AL A RG + A AF++ATQQ V RF+A L ADDL QET+LRA+ ++ Sbjct: 4 DTEVTSWALEAGRGDRDAAAAFVRATQQQVRRFLAALVSPVEADDLAQETYLRALRSLPS 63 Query: 67 FSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEVTTM 126 F+G SS RTWL +IARRV DH+R A +RPRT + +AD GF+ V + + Sbjct: 64 FAGRSSARTWLFSIARRVAVDHVRAATSRPRTIPMADSHDVADAD--GSGFDRQVALEQL 121 Query: 127 IANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 IA L ++REA ++TQ+LGL YA+AA VCGCPVGTIRSRV Sbjct: 122 IAALPADRREAFVVTQVLGLSYAEAAEVCGCPVGTIRSRV 161 >tr|C6R7L0|C6R7L0_9CORY Tax_Id=553206 SubName: Full=RNA polymerase sigma factor;[Corynebacterium tuberculostearicum SK141] Length = 180 Score = 154 bits (389), Expect = 4e-36 Identities = 81/164 (49%), Positives = 107/164 (65%) Query: 3 ASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIG 62 +++ D VTDLAL A G + AL FIKATQ DVWR +A+L ADDLTQET+LR I Sbjct: 5 SAADDARVTDLALRAGCGDRAALTEFIKATQDDVWRLLAHLGGPEGADDLTQETYLRVIS 64 Query: 63 AIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVE 122 A+ RF+ SS RTWLL++ARRV D+IR RPR + Y + M A + + + ++ Sbjct: 65 ALPRFAARSSARTWLLSLARRVWVDNIRHDMARPRKSATEYEDAMGAAPEESAAWSEWID 124 Query: 123 VTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 T+I L ++REAL+LTQ+LG Y +AA + G VGTIRSRV Sbjct: 125 ARTLIDALPADRREALILTQVLGYTYEEAAKIAGVRVGTIRSRV 168 >tr|C4RBD5|C4RBD5_9ACTO Tax_Id=219305 SubName: Full=Sigma-70 region 4 domain-containing protein;[Micromonospora sp. ATCC 39149] Length = 198 Score = 154 bits (389), Expect = 4e-36 Identities = 84/161 (52%), Positives = 105/161 (65%), Gaps = 1/161 (0%) Query: 7 DEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIER 66 DE VT A A G + A AF++A Q VWRF+A+L+ G ADDLTQETFLRA+ ++ Sbjct: 14 DEQVTRWARMAGAGDQPAAAAFVRALQGPVWRFLAHLAGPGEADDLTQETFLRALRSLPG 73 Query: 67 FSGHSSGRTWLLAIARRVVADHIRRAQTRPRT-TFDGYPERMLNADRHARGFEDLVEVTT 125 F+G SS RTW+ +IARRV D +R A TRPRT + A G +D V + Sbjct: 74 FAGRSSARTWVFSIARRVAVDQVRTAVTRPRTAALPDWQAAAEGAGAAEPGADDGVVLRQ 133 Query: 126 MIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 +IA LA E+REA + TQ+ GL YA+AA VCGCPVGTIRSRV Sbjct: 134 LIAGLAPERREAFVATQVAGLSYAEAAQVCGCPVGTIRSRV 174 >tr|C4ERJ2|C4ERJ2_STRRS Tax_Id=479432 RecName: Full=RNA polymerase sigma factor;[Streptosporangium roseum DSM 43021] Length = 240 Score = 153 bits (387), Expect = 7e-36 Identities = 85/168 (50%), Positives = 113/168 (67%), Gaps = 6/168 (3%) Query: 3 ASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIG 62 A+ D+ +T LALAA G+ +EAF +A DV RF+AYL+ +A+DLTQETFLR +G Sbjct: 57 AARSDDHLTVLALAARGGAPADVEAFTRAVYADVRRFIAYLAGSHSAEDLTQETFLRVLG 116 Query: 63 AIERFSGHSSGRTWLLAIARRVVADHIRRAQTRP----RTTFDGYPERMLNADRHARGFE 118 ++ RF+G SS RTWLL+IARRVV D R A RP + + ER R G E Sbjct: 117 SLPRFAGRSSARTWLLSIARRVVVDRFRSAAARPVVADLSDWQAAAERC--QPRGLPGRE 174 Query: 119 DLVEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 D V + ++A + E+REA +LTQL+GLPYA+AAA+ GCP+GT+RSRV Sbjct: 175 DGVALADLLAKVPRERREAFVLTQLVGLPYAEAAAMIGCPIGTVRSRV 222 >tr|Q9RCU5|Q9RCU5_STRCO Tax_Id=1902 SubName: Full=Probable ECF-family sigma factor;[Streptomyces coelicolor] Length = 213 Score = 153 bits (386), Expect = 9e-36 Identities = 86/163 (52%), Positives = 109/163 (66%), Gaps = 3/163 (1%) Query: 7 DEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLS-DVGNADDLTQETFLRAIGAIE 65 DE VT AL A G A+E F+ A +DV RFVAYLS D ADDL Q+TFLRA+G++ Sbjct: 27 DELVTAWALTARGGDPEAVERFVGALHRDVRRFVAYLSADPQAADDLAQDTFLRALGSLH 86 Query: 66 RFSGHSSGRTWLLAIARRVVADHIRRAQTRPR-TTFDGYPERMLNA-DRHARGFEDLVEV 123 RF G SS R WLL+IARR V D+ R A RPR D + + A +R GFED + + Sbjct: 87 RFEGRSSARVWLLSIARRAVIDNYRYASARPRLADVDDWQDAAERAQERGLPGFEDGIAL 146 Query: 124 TTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 +++ L E+REA +LTQL+GLPYA+AA + GCPVGT+RSRV Sbjct: 147 ADLLSALPAERREAFVLTQLVGLPYAEAAELSGCPVGTVRSRV 189 >tr|Q9RCU7|Q9RCU7_STRCO Tax_Id=1902 SubName: Full=Probable ECF-family sigma factor;[Streptomyces coelicolor] Length = 198 Score = 152 bits (385), Expect = 1e-35 Identities = 85/168 (50%), Positives = 113/168 (67%), Gaps = 3/168 (1%) Query: 2 IASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSD-VGNADDLTQETFLRA 60 + ++ D+ VT ALAAA G A++ F++ Q+DV R+VAYL+D V ADDLTQ+TFLRA Sbjct: 5 LPTATDDTVTAWALAAAAGDSEAVDRFVRELQRDVRRYVAYLADDVQAADDLTQDTFLRA 64 Query: 61 IGAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRT--TFDGYPERMLNADRHARGFE 118 + A+ RF G SS R WLL+IARR V D +RRA RPRT T D GF+ Sbjct: 65 LTALPRFEGRSSARVWLLSIARRAVVDSLRRAACRPRTACTDDWQAAAERAQPTGLPGFD 124 Query: 119 DLVEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 + + + ++ +L E+REA +LTQLLGLPYA+AA + CPVGT+RSRV Sbjct: 125 EGIALWELVDSLPGERREAFVLTQLLGLPYAEAAEMSRCPVGTVRSRV 172 >tr|C2GJD6|C2GJD6_9CORY Tax_Id=548478 SubName: Full=RNA polymerase sigma factor;[Corynebacterium glucuronolyticum ATCC 51866] Length = 169 Score = 150 bits (378), Expect = 8e-35 Identities = 81/162 (50%), Positives = 109/162 (67%), Gaps = 7/162 (4%) Query: 7 DEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIER 66 D+ VT LALAA +G + AL FIK TQ+DVWR +A+LS ADDLTQET+LR I A+ R Sbjct: 4 DDLVTRLALAAGKGDREALTEFIKLTQKDVWRLLAHLSSPAEADDLTQETYLRVISALPR 63 Query: 67 FSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHAR--GFEDLVEVT 124 F G S+ +TWL+ +ARRV D IR Q+RP+ + Y + +HA + +LV+V Sbjct: 64 FQGRSTAKTWLITLARRVWIDQIRHEQSRPKKSSTEYED-----VQHATPPEWSELVDVR 118 Query: 125 TMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 ++ +L E+REAL+LTQ+LG Y +AA + G VGTIRSRV Sbjct: 119 LLLNSLPPERREALVLTQVLGYSYEEAAKIAGVRVGTIRSRV 160 >tr|C2CS81|C2CS81_CORST Tax_Id=525268 SubName: Full=ECF family DNA-directed RNA polymerase sigma subunit SigY;[Corynebacterium striatum ATCC 6940] Length = 188 Score = 150 bits (378), Expect = 8e-35 Identities = 81/162 (50%), Positives = 105/162 (64%), Gaps = 2/162 (1%) Query: 7 DEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIER 66 D VTDLAL A RG + AL FIK+TQ DVWR +A+L ADDLTQET+LR IGA+ R Sbjct: 11 DARVTDLALRAGRGDRAALTEFIKSTQDDVWRLLAHLGGPEIADDLTQETYLRVIGALPR 70 Query: 67 FSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNAD--RHARGFEDLVEVT 124 F+ SS RTWLL++ARRV D+IR RPR + Y + A ++ + D ++ Sbjct: 71 FAARSSARTWLLSLARRVWVDNIRHDMARPRKSATEYEDAAAQAPVIENSGTWSDWIDAR 130 Query: 125 TMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 +I L ++REAL+LTQ+LG Y +AA + G VGTIRSRV Sbjct: 131 ALIDALPADRREALILTQVLGYTYEEAAKIAGVRVGTIRSRV 172 >tr|C0VRJ6|C0VRJ6_9CORY Tax_Id=548477 SubName: Full=RNA polymerase sigma factor;[Corynebacterium glucuronolyticum ATCC 51867] Length = 169 Score = 150 bits (378), Expect = 8e-35 Identities = 81/162 (50%), Positives = 109/162 (67%), Gaps = 7/162 (4%) Query: 7 DEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIER 66 D+ VT LALAA +G + AL FIK TQ+DVWR +A+LS ADDLTQET+LR I A+ R Sbjct: 4 DDLVTRLALAAGKGDREALTEFIKLTQKDVWRLLAHLSSPAEADDLTQETYLRVISALPR 63 Query: 67 FSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHAR--GFEDLVEVT 124 F G S+ +TWL+ +ARRV D IR Q+RP+ + Y + +HA + +LV+V Sbjct: 64 FQGRSTAKTWLITLARRVWIDQIRHEQSRPKKSSTEYED-----VQHATPPEWSELVDVR 118 Query: 125 TMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 ++ +L E+REAL+LTQ+LG Y +AA + G VGTIRSRV Sbjct: 119 LLLNSLPPERREALVLTQVLGYSYEEAAKIAGVRVGTIRSRV 160 >tr|C9Z3X6|C9Z3X6_STRSW Tax_Id=680198 SubName: Full=Putative sigma factor;[Streptomyces scabies] Length = 213 Score = 149 bits (377), Expect = 1e-34 Identities = 87/169 (51%), Positives = 111/169 (65%), Gaps = 9/169 (5%) Query: 4 SSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYL-SDVGNADDLTQETFLRAIG 62 S+ DE++T ALAA G A+E F+ A Q+DV RFVA+L +D DDL Q+TFLRA+G Sbjct: 16 STTDESITAWALAARGGDPEAVERFVGALQRDVRRFVAHLCADPQAVDDLAQDTFLRALG 75 Query: 63 AIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHAR-----GF 117 ++ RF G S RTWLL+IARR V D R A RPR P+ L A HA+ GF Sbjct: 76 SLHRFEGRCSARTWLLSIARRAVTDSFRYAAARPR--LSDVPDWRL-AVEHAQPRGLPGF 132 Query: 118 EDLVEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 +D V +T ++ L E+REA +LTQ+LGL Y DAA + GCPVGT+RSRV Sbjct: 133 DDGVALTDLLGALPEERREAFVLTQMLGLSYEDAAELAGCPVGTVRSRV 181 >tr|Q82PK4|Q82PK4_STRAW Tax_Id=33903 (sig10)RecName: Full=RNA polymerase sigma factor;[Streptomyces avermitilis] Length = 204 Score = 149 bits (376), Expect = 1e-34 Identities = 82/168 (48%), Positives = 110/168 (65%), Gaps = 7/168 (4%) Query: 4 SSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLS-DVGNADDLTQETFLRAIG 62 +S DE++T ALAA G A+E F++A +DV R+VA+LS D ADDL Q+TFLRA+G Sbjct: 17 ASADESITAWALAARGGDPEAVERFVRALHRDVVRYVAHLSADPQAADDLAQDTFLRALG 76 Query: 63 AIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADR----HARGFE 118 ++ RF G SS R WL++IARR V D R A RPR P+ L + G + Sbjct: 77 SLHRFEGRSSARAWLMSIARRAVVDSFRHAAARPR--LSDIPDWQLAVELAQPCDLPGLD 134 Query: 119 DLVEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 D + + ++A L E+REA +LTQL+GLPYA+AA V GCP+GT+RSRV Sbjct: 135 DGIALLDLLAVLPDERREAFVLTQLMGLPYAEAAEVSGCPIGTVRSRV 182 >tr|B5GY45|B5GY45_STRCL Tax_Id=443255 RecName: Full=RNA polymerase sigma factor;[Streptomyces clavuligerus ATCC 27064] Length = 215 Score = 149 bits (376), Expect = 1e-34 Identities = 86/165 (52%), Positives = 106/165 (64%), Gaps = 7/165 (4%) Query: 7 DEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLS-DVGNADDLTQETFLRAIGAIE 65 D +T ALAA G + A E F++AT DV RFV +L+ D A+DLTQE FLRA+ I Sbjct: 32 DTEITGWALAAGLGDRSAAERFVRATYDDVRRFVVHLTADARGAEDLTQEVFLRALAGIS 91 Query: 66 RFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNAD----RHARGFEDLV 121 RF+G S R+WLLAIARRVV D RRA RPR P+ + AD RH GFE+ V Sbjct: 92 RFAGRSCARSWLLAIARRVVVDRYRRAAARPRIA--DTPDWLGAADRAQPRHLPGFEESV 149 Query: 122 EVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 +A L +R+A +LT +LGLPYA+AA + GCPVGTIRSRV Sbjct: 150 AFADAVAALEPGRRQAFVLTCVLGLPYAEAARLLGCPVGTIRSRV 194 >tr|Q848B1|Q848B1_STRHY Tax_Id=1912 (gdnS)SubName: Full=Putative ECF-family sigma factor;[Streptomyces hygroscopicus] Length = 210 Score = 149 bits (375), Expect = 2e-34 Identities = 84/169 (49%), Positives = 111/169 (65%), Gaps = 3/169 (1%) Query: 1 MIASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLS-DVGNADDLTQETFLR 59 + ++ D VT+ ALAA G + A++ FI+AT +DV RFV +LS D +DL QET+LR Sbjct: 17 LATAANDHQVTEWALAARDGDREAVDHFIRATYRDVRRFVLHLSADPHGCEDLAQETYLR 76 Query: 60 AIGAIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRT-TFDGYPERMLNAD-RHARGF 117 A+ + RF+G SS RTWLL+IARRVV D R A RPRT D + E A GF Sbjct: 77 ALTGLPRFAGRSSARTWLLSIARRVVVDRYRTAAARPRTLDADDWQEAAERAQPAGLPGF 136 Query: 118 EDLVEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 ++ V + ++A LA +RE LLT++LGLPYADAA GCP+GT+RSRV Sbjct: 137 DEGVALMDLLAALAPARREMFLLTKVLGLPYADAATATGCPIGTVRSRV 185 >tr|A3KIE8|A3KIE8_STRAM Tax_Id=278992 RecName: Full=RNA polymerase sigma factor;[Streptomyces ambofaciens ATCC 23877] Length = 213 Score = 148 bits (374), Expect = 2e-34 Identities = 83/166 (50%), Positives = 107/166 (64%), Gaps = 3/166 (1%) Query: 4 SSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYL-SDVGNADDLTQETFLRAIG 62 +S D + T ALAA G A++ ++A +DV FV YL +D ADDL Q+TFLRA+G Sbjct: 24 TSADVSTTTWALAARDGDTEAVDHLVRALHRDVRHFVTYLGADPQTADDLAQDTFLRALG 83 Query: 63 AIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPR--TTFDGYPERMLNADRHARGFEDL 120 ++ RF G SS RTWLL+IARR V D R A RPR T D +R GF+D Sbjct: 84 SLHRFEGRSSARTWLLSIARRAVVDSYRHASARPRLADTDDWQTVAERAQERGLPGFDDG 143 Query: 121 VEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 + + ++A L E+REA +LTQLLGLPYA+AAA+ CPVGT+RSRV Sbjct: 144 IALGELLAALPDERREAFVLTQLLGLPYAEAAALSDCPVGTVRSRV 189 >tr|Q8FTZ9|Q8FTZ9_COREF Tax_Id=152794 SubName: Full=Putative RNA polymerase sigma factor;[Corynebacterium efficiens] Length = 202 Score = 148 bits (373), Expect = 3e-34 Identities = 79/160 (49%), Positives = 106/160 (66%) Query: 7 DEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIER 66 D VT+LALAA RG + AL FI+ TQ DVWR +A+L ADDLTQET+LR + A+ R Sbjct: 24 DAHVTELALAAGRGDRDALTEFIRETQDDVWRLLAHLGGREIADDLTQETYLRVMSALPR 83 Query: 67 FSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEVTTM 126 F+ SS RTWLL++ARRV D+IR RPR + Y + + ++ + + ++V T+ Sbjct: 84 FAARSSARTWLLSLARRVWVDNIRHDMARPRKSHVEYEDTGVTDATNSTIWSEWIDVRTL 143 Query: 127 IANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 I L E+REAL+LTQ+LG Y +AA + G VGTIRSRV Sbjct: 144 IDALPAERREALILTQVLGYTYEEAAKIAGVRVGTIRSRV 183 >tr|C8NR78|C8NR78_COREF Tax_Id=196164 (sigC)SubName: Full=RNA polymerase sigma-70 factor, ECF subfamily;[Corynebacterium efficiens YS-314] Length = 186 Score = 148 bits (373), Expect = 3e-34 Identities = 79/160 (49%), Positives = 106/160 (66%) Query: 7 DEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIER 66 D VT+LALAA RG + AL FI+ TQ DVWR +A+L ADDLTQET+LR + A+ R Sbjct: 8 DAHVTELALAAGRGDRDALTEFIRETQDDVWRLLAHLGGREIADDLTQETYLRVMSALPR 67 Query: 67 FSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEVTTM 126 F+ SS RTWLL++ARRV D+IR RPR + Y + + ++ + + ++V T+ Sbjct: 68 FAARSSARTWLLSLARRVWVDNIRHDMARPRKSHVEYEDTGVTDATNSTIWSEWIDVRTL 127 Query: 127 IANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 I L E+REAL+LTQ+LG Y +AA + G VGTIRSRV Sbjct: 128 IDALPAERREALILTQVLGYTYEEAAKIAGVRVGTIRSRV 167 >tr|A4QAP8|A4QAP8_CORGB Tax_Id=340322 SubName: Full=Putative uncharacterized protein;[Corynebacterium glutamicum] Length = 193 Score = 147 bits (372), Expect = 4e-34 Identities = 80/160 (50%), Positives = 105/160 (65%) Query: 7 DEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIER 66 D VT+LALAA RG + AL FI+ TQ DVWR +A+L ADDLTQET+LR +GA+ R Sbjct: 8 DAHVTELALAAGRGDRAALTDFIRETQDDVWRLLAHLGGHEIADDLTQETYLRVMGALPR 67 Query: 67 FSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEVTTM 126 F+ SS RTWLL++ARRV D+IR RPR + Y + +A + + ++V T+ Sbjct: 68 FAARSSARTWLLSLARRVWVDNIRHDMARPRKSIVEYEDTGATDASNAGIWSEWIDVRTL 127 Query: 127 IANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 I L E+REAL+LTQ+LG Y +AA + VGTIRSRV Sbjct: 128 IDALPPERREALILTQVLGYTYEEAAKIADVRVGTIRSRV 167 >tr|C4LGM1|C4LGM1_CORK4 Tax_Id=645127 (sigC)RecName: Full=RNA polymerase sigma factor;[Corynebacterium kroppenstedtii] Length = 228 Score = 147 bits (371), Expect = 5e-34 Identities = 85/184 (46%), Positives = 113/184 (61%), Gaps = 11/184 (5%) Query: 7 DEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIER 66 D VT LAL A +G + AL FI+ TQ+DVWR +A+L+D+ ADDLTQET+LR I A+ Sbjct: 34 DARVTALALRAGQGDRAALTEFIRRTQKDVWRLLAHLADIDRADDLTQETYLRIISALPT 93 Query: 67 FSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRH-------ARGFED 119 F+G SS RTWLL++ARRV D +R RP++T E AD+H + + D Sbjct: 94 FAGRSSARTWLLSVARRVWVDSVRHDMARPQST---GTEWETVADQHTATNTAASSSWSD 150 Query: 120 LVEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVXXXXXXXXXXTEH 179 V+V ++ NL ++REAL+LTQ+LG Y +AA + G VGTIRSRV T Sbjct: 151 WVDVQLLMENLDPDRREALILTQVLGYTYDEAATIVGVRVGTIRSRVARARTDLIEATS- 209 Query: 180 NHLT 183 NH T Sbjct: 210 NHAT 213 >tr|C3PJS1|C3PJS1_CORA7 Tax_Id=548476 (sigC)SubName: Full=ECF-family sigma factor C;[Corynebacterium aurimucosum] Length = 182 Score = 147 bits (371), Expect = 5e-34 Identities = 79/162 (48%), Positives = 104/162 (64%), Gaps = 2/162 (1%) Query: 7 DEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIER 66 D VTDLAL A RG + AL FIK+TQ DVWR +A+L ADDLTQET+LR IGA+ R Sbjct: 9 DARVTDLALKAGRGDRAALTEFIKSTQDDVWRLLAHLGGPDIADDLTQETYLRVIGALPR 68 Query: 67 FSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPE--RMLNADRHARGFEDLVEVT 124 F+ SS RTWLL++ARRV D+IR RPR + Y + + + + + ++ Sbjct: 69 FAARSSARTWLLSLARRVWVDNIRHDMARPRKSATEYEDAAALTTTPESSGTWSEWIDAR 128 Query: 125 TMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 +I L ++REAL+LTQ+LG Y +AA + G VGTIRSRV Sbjct: 129 ALIDALPEDRREALILTQVLGYTYEEAAKIAGVRVGTIRSRV 170 >tr|B5HT54|B5HT54_9ACTO Tax_Id=463191 RecName: Full=RNA polymerase sigma factor;[Streptomyces sviceus ATCC 29083] Length = 213 Score = 147 bits (371), Expect = 5e-34 Identities = 82/167 (49%), Positives = 109/167 (65%), Gaps = 7/167 (4%) Query: 5 SGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYL-SDVGNADDLTQETFLRAIGA 63 S D +VT ALAA G A++ F++A DV R+V+YL +D + DDL Q+TFLRA+G+ Sbjct: 37 SADASVTAWALAARAGDTDAVDRFVRALHHDVLRYVSYLCADPQSVDDLAQDTFLRALGS 96 Query: 64 IERFSGHSSGRTWLLAIARRVVADHIRRAQTRPR----TTFDGYPERMLNADRHARGFED 119 + RF G SS RTWLL+IARR V D R A RPR + + ER R+ GF+D Sbjct: 97 LHRFEGRSSARTWLLSIARRAVIDGFRHAAARPRRYDSSDWQAAVERA--QPRNVPGFDD 154 Query: 120 LVEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 + + ++ L+ E+REA +LTQLLGL Y +AA V GCPVGT+RSRV Sbjct: 155 GIALLDLLGALSDERREAFVLTQLLGLSYEEAAVVSGCPVGTVRSRV 201 >tr|C0XU56|C0XU56_9CORY Tax_Id=525263 SubName: Full=RNA polymerase sigma factor;[Corynebacterium lipophiloflavum DSM 44291] Length = 215 Score = 147 bits (370), Expect = 7e-34 Identities = 79/162 (48%), Positives = 108/162 (66%), Gaps = 4/162 (2%) Query: 8 EAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIERF 67 + VT+LAL A RG K AL FI+ATQ DVWRF+A+L+ ADDLTQET+LR +GA+ RF Sbjct: 44 DTVTELALRAGRGDKSALTQFIEATQGDVWRFLAHLAGREQADDLTQETYLRVLGALPRF 103 Query: 68 SGHSSGRTWLLAIARRVVADHIRRAQTRPR---TTFDGYPERMLNADRHARGFEDLVEVT 124 + SS RTWLL +ARRV D IR RPR T +D + + D + + ++++ Sbjct: 104 AARSSARTWLLTLARRVWIDSIRHDLARPRKSITQYDDVAAQKPSPD-NPNTWSEVIDAR 162 Query: 125 TMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 T++ L E+REA++LTQ+LG Y +AA + G +GTIRSRV Sbjct: 163 TLLDALPAERREAIVLTQVLGYTYEEAARIAGVRIGTIRSRV 204 >tr|Q8NTQ2|Q8NTQ2_CORGL Tax_Id=1718 (sigC)SubName: Full=DNA-directed RNA polymerase specialized sigma subunits, sigma24 homologs; SubName: Full=Sigma-70 factor (ECF subfamily);[Corynebacterium glutamicum] Length = 193 Score = 145 bits (366), Expect = 2e-33 Identities = 79/160 (49%), Positives = 104/160 (65%) Query: 7 DEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIER 66 D VT+LALAA RG + AL FI+ TQ DVWR +A+L ADDLTQET+LR + A+ R Sbjct: 8 DAHVTELALAAGRGDRAALTDFIRETQDDVWRLLAHLGGHEIADDLTQETYLRVMSALPR 67 Query: 67 FSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEVTTM 126 F+ SS RTWLL++ARRV D+IR RPR + Y + +A + + ++V T+ Sbjct: 68 FAARSSARTWLLSLARRVWVDNIRHDMARPRKSIVEYEDTGATDASNAGIWSEWIDVRTL 127 Query: 127 IANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 I L E+REAL+LTQ+LG Y +AA + VGTIRSRV Sbjct: 128 IDALPPERREALILTQVLGYTYEEAAKIADVRVGTIRSRV 167 >tr|C9N8C8|C9N8C8_9ACTO Tax_Id=591167 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Streptomyces flavogriseus ATCC 33331] Length = 255 Score = 145 bits (366), Expect = 2e-33 Identities = 79/166 (47%), Positives = 107/166 (64%), Gaps = 3/166 (1%) Query: 4 SSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLS-DVGNADDLTQETFLRAIG 62 ++ D A T LALAA G + F++A DVWR+VA+LS + ADDLTQ+ FLRA+ Sbjct: 31 AASDAAATRLALAARDGDPVKADRFVRALHSDVWRYVAHLSGETQAADDLTQDVFLRALT 90 Query: 63 AIERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADR--HARGFEDL 120 + F G SS RTWLL+IARR VAD RRA RPR +R + GF++ Sbjct: 91 GLPGFEGRSSARTWLLSIARRTVADSFRRAAARPRLADRDDWQRAAEQAQPCGTPGFDEG 150 Query: 121 VEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 V + +++++ ++REA +LTQLLG+PY +AA V GCPVGT+RSRV Sbjct: 151 VALAELLSSIQADRREAFVLTQLLGIPYKEAATVIGCPVGTVRSRV 196 >tr|C4DT70|C4DT70_9ACTO Tax_Id=446470 RecName: Full=RNA polymerase sigma factor;[Stackebrandtia nassauensis DSM 44728] Length = 247 Score = 144 bits (363), Expect = 4e-33 Identities = 86/158 (54%), Positives = 105/158 (66%), Gaps = 7/158 (4%) Query: 11 TDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIERFSGH 70 T LALAA G A+ AF++ATQ +VWR A LSDV ADDL QET+LRA+ A+ F G Sbjct: 10 TRLALAARGGDPVAVAAFVRATQTEVWRLCAALSDVHTADDLAQETYLRALKALASFEGR 69 Query: 71 SSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERML-NADRHARGFEDL-VEVTTMIA 128 SS RTWLL IARRV ADH+RR R R R+L NA R G + + +T ++A Sbjct: 70 SSVRTWLLGIARRVCADHVRRLVRRRR-----LDARLLDNAPRTVEGDPAVSLALTDLLA 124 Query: 129 NLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 L++E+R A +LTQ+LGL YADAA V PVGTIRSRV Sbjct: 125 RLSSERRSAFVLTQVLGLSYADAAVVDNVPVGTIRSRV 162 >tr|Q4JSN0|Q4JSN0_CORJK Tax_Id=306537 (sigC)SubName: Full=ECF-family sigma factor C;[Corynebacterium jeikeium] Length = 205 Score = 144 bits (362), Expect = 6e-33 Identities = 77/164 (46%), Positives = 103/164 (62%), Gaps = 4/164 (2%) Query: 7 DEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIER 66 D AVTDLAL AA G ++AL FI AT DVWR +A+L+D ADDLTQET+LR + A+ R Sbjct: 12 DAAVTDLALRAASGDRQALTEFISATHDDVWRLLAHLADTDRADDLTQETYLRVLSALPR 71 Query: 67 FSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTF----DGYPERMLNADRHARGFEDLVE 122 F+ S+ RTW+L++ARRV D +R RPR++ D + + + V+ Sbjct: 72 FAARSTARTWILSLARRVWVDSVRHDMARPRSSATEIEDATSATPAAETTGGQSWAEWVD 131 Query: 123 VTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 +I L E+REAL+LTQ+LG YA+AA + VGTIRSRV Sbjct: 132 TRALIDQLEEERREALILTQVLGYTYAEAAKIANVRVGTIRSRV 175 >tr|C0U6T9|C0U6T9_9ACTO Tax_Id=526225 RecName: Full=RNA polymerase sigma factor;[Geodermatophilus obscurus DSM 43160] Length = 182 Score = 144 bits (362), Expect = 6e-33 Identities = 81/155 (52%), Positives = 99/155 (63%), Gaps = 1/155 (0%) Query: 13 LALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIERFSGHSS 72 LA AA G A A ++ATQ DVWR A L D +ADDLTQET+LRA G++ RF G SS Sbjct: 7 LAAAAVDGDPLAAAALVRATQSDVWRLCAALGDRQSADDLTQETYLRAFGSLHRFEGRSS 66 Query: 73 GRTWLLAIARRVVADHIRRAQTRPRTTF-DGYPERMLNADRHARGFEDLVEVTTMIANLA 131 RTWLL+IARRV AD +R + R T + L A + V ++A L+ Sbjct: 67 LRTWLLSIARRVCADAVRSRRRRRLTLVREDADLEALGAGNDGDRVGEGAAVADLLARLS 126 Query: 132 TEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 166 ++REA +LTQLLGLPYA+AA V GCPVGTIRSRV Sbjct: 127 PDRREAFVLTQLLGLPYAEAAEVAGCPVGTIRSRV 161 Database: Amellifera_nr Posted date: Jan 15, 2010 5:10 AM Number of letters in database: 3,808,957,724 Number of sequences in database: 11,153,314 Lambda K H 0.322 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11153314 Number of Hits to DB: 1,128,825,200 Number of extensions: 39143372 Number of successful extensions: 100548 Number of sequences better than 10.0: 5946 Number of HSP's gapped: 99194 Number of HSP's successfully gapped: 5947 Length of query: 184 Length of database: 3,808,957,724 Length adjustment: 129 Effective length of query: 55 Effective length of database: 2,370,180,218 Effective search space: 130359911990 Effective search space used: 130359911990 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 76 (33.9 bits)