BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ML1546c
         (320 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,153,314 sequences; 3,808,957,724 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

sp|Q9Z5I4|TRUB_MYCLE Tax_Id=1769 (truB)RecName: Full=tRNA pseudo...   589   e-166
tr|B8ZRS9|B8ZRS9_MYCLB Tax_Id=561304 (truB)SubName: Full=tRNA ps...   589   e-166
tr|B2HKU5|B2HKU5_MYCMM Tax_Id=216594 (truB)SubName: Full=tRNA ps...   439   e-121
sp|A0PQD9|TRUB_MYCUA Tax_Id=362242 (truB)RecName: Full=tRNA pseu...   436   e-120
sp|P62190|TRUB_MYCTU Tax_Id=1773 (truB)RecName: Full=tRNA pseudo...   427   e-117
sp|A5U6E6|TRUB_MYCTA Tax_Id=419947 (truB)RecName: Full=tRNA pseu...   427   e-117
sp|A1KMD6|TRUB_MYCBP Tax_Id=410289 (truB)RecName: Full=tRNA pseu...   427   e-117
sp|P62189|TRUB_MYCBO Tax_Id=1765 (truB)RecName: Full=tRNA pseudo...   427   e-117
tr|C6DX50|C6DX50_MYCTK Tax_Id=478434 SubName: Full=tRNA pseudour...   427   e-117
tr|C1AFQ7|C1AFQ7_MYCBT Tax_Id=561275 (truB)SubName: Full=tRNA ps...   427   e-117
tr|A5WR44|A5WR44_MYCTF Tax_Id=336982 SubName: Full=tRNA pseudour...   427   e-117
tr|A4KK67|A4KK67_MYCTU Tax_Id=395095 SubName: Full=TRNA pseudour...   427   e-117
tr|A2VLC7|A2VLC7_MYCTU Tax_Id=348776 SubName: Full=TRNA pseudour...   427   e-117
sp|Q73VW3|TRUB_MYCPA Tax_Id=1770 (truB)RecName: Full=tRNA pseudo...   411   e-113
sp|A0QIX1|TRUB_MYCA1 Tax_Id=243243 (truB)RecName: Full=tRNA pseu...   403   e-110
tr|A1T7J3|A1T7J3_MYCVP Tax_Id=350058 SubName: Full=tRNA pseudour...   392   e-107
tr|A0QVP8|A0QVP8_MYCS2 Tax_Id=246196 (truB)SubName: Full=tRNA ps...   392   e-107
sp|Q1BA81|TRUB_MYCSS Tax_Id=164756 (truB)RecName: Full=tRNA pseu...   389   e-106
sp|A1UET1|TRUB_MYCSK Tax_Id=189918 (truB)RecName: Full=tRNA pseu...   389   e-106
sp|A3PY88|TRUB_MYCSJ Tax_Id=164757 (truB)RecName: Full=tRNA pseu...   389   e-106
tr|A4TCH2|A4TCH2_MYCGI Tax_Id=350054 SubName: Full=tRNA pseudour...   388   e-106
sp|B1MD72|TRUB_MYCA9 Tax_Id=561007 (truB)RecName: Full=tRNA pseu...   383   e-104
tr|C0ZYB2|C0ZYB2_RHOE4 Tax_Id=234621 (truB)SubName: Full=tRNA ps...   332   5e-89
tr|C3JK60|C3JK60_RHOER Tax_Id=596309 (truB)SubName: Full=tRNA ps...   331   8e-89
tr|C6WDK2|C6WDK2_ACTMD Tax_Id=446462 SubName: Full=tRNA pseudour...   326   2e-87
sp|Q5YSE0|TRUB_NOCFA Tax_Id=37329 (truB)RecName: Full=tRNA pseud...   325   3e-87
tr|C1B320|C1B320_RHOOB Tax_Id=632772 (truB)SubName: Full=tRNA ps...   324   7e-87
sp|Q0S212|TRUB_RHOSR Tax_Id=101510 (truB)RecName: Full=tRNA pseu...   322   4e-86
tr|C2ANZ2|C2ANZ2_TSUPA Tax_Id=521096 SubName: Full=tRNA pseudour...   312   4e-83
tr|C7MQV8|C7MQV8_SACVD Tax_Id=471857 SubName: Full=tRNA pseudour...   306   2e-81
tr|D0LBJ3|D0LBJ3_9ACTO Tax_Id=526226 SubName: Full=tRNA pseudour...   306   2e-81
tr|A4FM27|A4FM27_SACEN Tax_Id=405948 SubName: Full=Putative unch...   302   4e-80
tr|C2BNY8|C2BNY8_9CORY Tax_Id=525264 (truB)SubName: Full=tRNA ps...   301   7e-80
sp|C3PH13|TRUB_CORA7 Tax_Id=548476 (truB)RecName: Full=tRNA pseu...   299   3e-79
tr|C6RAH4|C6RAH4_9CORY Tax_Id=553206 (truB)SubName: Full=tRNA ps...   299   3e-79
tr|C0XSF2|C0XSF2_9CORY Tax_Id=525263 (truB)SubName: Full=tRNA ps...   298   7e-79
sp|P60343|TRUB_CORDI Tax_Id=1717 (truB)RecName: Full=tRNA pseudo...   292   3e-77
tr|C2CNX5|C2CNX5_CORST Tax_Id=525268 (truB)SubName: Full=tRNA ps...   292   3e-77
tr|A8M755|A8M755_SALAI Tax_Id=391037 SubName: Full=tRNA pseudour...   290   2e-76
tr|C8NU03|C8NU03_9CORY Tax_Id=585529 (truB)SubName: Full=tRNA ps...   290   2e-76
sp|Q8FPB3|TRUB_COREF Tax_Id=152794 (truB)RecName: Full=tRNA pseu...   288   6e-76
tr|C8NPI1|C8NPI1_COREF Tax_Id=196164 (truB)SubName: Full=tRNA ps...   288   6e-76
tr|C4RD76|C4RD76_9ACTO Tax_Id=219305 SubName: Full=tRNA pseudour...   288   6e-76
tr|C0WKN3|C0WKN3_9CORY Tax_Id=525260 (truB)SubName: Full=tRNA ps...   288   6e-76
sp|A0JUU8|TRUB_ARTS2 Tax_Id=290399 (truB)RecName: Full=tRNA pseu...   286   2e-75
sp|A1R520|TRUB_ARTAT Tax_Id=290340 (truB)RecName: Full=tRNA pseu...   286   3e-75
sp|A4QEY6|TRUB_CORGB Tax_Id=340322 (truB)RecName: Full=tRNA pseu...   285   4e-75
tr|B8HG60|B8HG60_ARTCA Tax_Id=452863 SubName: Full=tRNA pseudour...   285   7e-75
tr|A4X4P5|A4X4P5_SALTO Tax_Id=369723 SubName: Full=tRNA pseudour...   281   7e-74
tr|C0VVH0|C0VVH0_9CORY Tax_Id=548477 (truB)SubName: Full=tRNA ps...   280   1e-73

>sp|Q9Z5I4|TRUB_MYCLE Tax_Id=1769 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Mycobacterium
           leprae]
          Length = 320

 Score =  589 bits (1518), Expect = e-166
 Identities = 303/303 (100%), Positives = 303/303 (100%)

Query: 1   MSESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVD 60
           MSESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVD
Sbjct: 1   MSESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVD 60

Query: 61  RATKILGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDI 120
           RATKILGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDI
Sbjct: 61  RATKILGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDI 120

Query: 121 KQVPSAVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDV 180
           KQVPSAVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDV
Sbjct: 121 KQVPSAVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDV 180

Query: 181 EVECSSGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLD 240
           EVECSSGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLD
Sbjct: 181 EVECSSGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLD 240

Query: 241 ETCLLMFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVV 300
           ETCLLMFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVV
Sbjct: 241 ETCLLMFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVV 300

Query: 301 LHP 303
           LHP
Sbjct: 301 LHP 303


>tr|B8ZRS9|B8ZRS9_MYCLB Tax_Id=561304 (truB)SubName: Full=tRNA
           pseudouridine 55 synthase;[Mycobacterium leprae]
          Length = 320

 Score =  589 bits (1518), Expect = e-166
 Identities = 303/303 (100%), Positives = 303/303 (100%)

Query: 1   MSESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVD 60
           MSESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVD
Sbjct: 1   MSESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVD 60

Query: 61  RATKILGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDI 120
           RATKILGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDI
Sbjct: 61  RATKILGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDI 120

Query: 121 KQVPSAVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDV 180
           KQVPSAVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDV
Sbjct: 121 KQVPSAVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDV 180

Query: 181 EVECSSGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLD 240
           EVECSSGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLD
Sbjct: 181 EVECSSGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLD 240

Query: 241 ETCLLMFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVV 300
           ETCLLMFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVV
Sbjct: 241 ETCLLMFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVV 300

Query: 301 LHP 303
           LHP
Sbjct: 301 LHP 303


>tr|B2HKU5|B2HKU5_MYCMM Tax_Id=216594 (truB)SubName: Full=tRNA
           pseudouridine synthase B TruB;[Mycobacterium marinum]
          Length = 301

 Score =  439 bits (1130), Expect = e-121
 Identities = 230/303 (75%), Positives = 250/303 (82%), Gaps = 5/303 (1%)

Query: 1   MSESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVD 60
           MS  + G G GPGIVV+DKP  MTSHDVV RCRRIF TRRVGHAGTLDPMATGVLV+G++
Sbjct: 1   MSRQNAGPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIE 60

Query: 61  RATKILGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDI 120
           RATKILGLL   SK Y ATIRLGQTTSTEDAEGE L  VSA HV  EAIA AI  L GDI
Sbjct: 61  RATKILGLLTATSKSYAATIRLGQTTSTEDAEGEPLASVSAEHVAPEAIAAAILDLTGDI 120

Query: 121 KQVPSAVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDV 180
           +QVPSAVSAIKVDGRRAY+L REG  VEL ARPVRIDRFE++ +R G     ADVID+DV
Sbjct: 121 RQVPSAVSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRG-----ADVIDIDV 175

Query: 181 EVECSSGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLD 240
           EV+CSSGTYIRALARDLG A  VGGHLTSLRRTRVG F+L QA SL++LAE P LS TLD
Sbjct: 176 EVDCSSGTYIRALARDLGAALDVGGHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLD 235

Query: 241 ETCLLMFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVV 300
           + CLLMFPRRDLTV E ++  NGRP+  AGIDGIYAASDADGRVIALLRDEG RTKSVVV
Sbjct: 236 QACLLMFPRRDLTVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVV 295

Query: 301 LHP 303
           + P
Sbjct: 296 IRP 298


>sp|A0PQD9|TRUB_MYCUA Tax_Id=362242 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Mycobacterium
           ulcerans]
          Length = 301

 Score =  436 bits (1120), Expect = e-120
 Identities = 228/303 (75%), Positives = 249/303 (82%), Gaps = 5/303 (1%)

Query: 1   MSESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVD 60
           MS  + G G GPGIVV+DKP  MTSHDVV RCRRIF TRR+GHAGTLDPMATGVLV+G++
Sbjct: 1   MSRQNAGPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRLGHAGTLDPMATGVLVIGIE 60

Query: 61  RATKILGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDI 120
           RATKILGLL   SK Y ATIRLGQTTSTEDAEGE L  VSA HV  EAIA AI  L GDI
Sbjct: 61  RATKILGLLIATSKSYAATIRLGQTTSTEDAEGEPLASVSAEHVAPEAIAAAILDLTGDI 120

Query: 121 KQVPSAVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDV 180
           +QVPSAVSAIKVDGRRAY+L REG  VEL ARPVRIDRFE++ +R G     ADVID+DV
Sbjct: 121 RQVPSAVSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRG-----ADVIDIDV 175

Query: 181 EVECSSGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLD 240
           EV+CSSGTYIRALARDLG A  VGGHLTSLRRTRV  F+L QA SL++LAE P LS TLD
Sbjct: 176 EVDCSSGTYIRALARDLGAALDVGGHLTSLRRTRVSHFDLSQAASLDELAERPALSLTLD 235

Query: 241 ETCLLMFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVV 300
           + CLLMFPRRDLTV E ++  NGRP+  AGIDGIYAASDADGRVIALLRDEG RTKSVVV
Sbjct: 236 QACLLMFPRRDLTVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVV 295

Query: 301 LHP 303
           + P
Sbjct: 296 IRP 298


>sp|P62190|TRUB_MYCTU Tax_Id=1773 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase; AltName:
           Full=MTB-TRUB;[Mycobacterium tuberculosis]
          Length = 298

 Score =  427 bits (1097), Expect = e-117
 Identities = 217/293 (74%), Positives = 249/293 (84%), Gaps = 5/293 (1%)

Query: 11  GPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLA 70
           GPGIVVIDKP+GMTSHDVV RCRRIF TRRVGHAGTLDPMATGVLV+G++RATKILGLL 
Sbjct: 5   GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64

Query: 71  GASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAI 130
            A K Y ATIRLGQTTSTEDAEG++LQ V A+H+T EAI  A+ RLRG+I+QVPS+VSAI
Sbjct: 65  AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124

Query: 131 KVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYI 190
           KV GRRAYRL R+G  V+L+ARP+RIDRFE+LA R   +     +ID+DVE++CSSGTYI
Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ-----LIDIDVEIDCSSGTYI 179

Query: 191 RALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRR 250
           RALARDLGDA GVGGH+T+LRRTRVGRFELDQA SL+DLAE P LS +LDE CLLMF RR
Sbjct: 180 RALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARR 239

Query: 251 DLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           DLT +E  A +NGR + + GIDG+YAA DADGRVIALLRDEG RT+SV VL P
Sbjct: 240 DLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRP 292


>sp|A5U6E6|TRUB_MYCTA Tax_Id=419947 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Mycobacterium
           tuberculosis]
          Length = 298

 Score =  427 bits (1097), Expect = e-117
 Identities = 217/293 (74%), Positives = 249/293 (84%), Gaps = 5/293 (1%)

Query: 11  GPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLA 70
           GPGIVVIDKP+GMTSHDVV RCRRIF TRRVGHAGTLDPMATGVLV+G++RATKILGLL 
Sbjct: 5   GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64

Query: 71  GASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAI 130
            A K Y ATIRLGQTTSTEDAEG++LQ V A+H+T EAI  A+ RLRG+I+QVPS+VSAI
Sbjct: 65  AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124

Query: 131 KVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYI 190
           KV GRRAYRL R+G  V+L+ARP+RIDRFE+LA R   +     +ID+DVE++CSSGTYI
Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ-----LIDIDVEIDCSSGTYI 179

Query: 191 RALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRR 250
           RALARDLGDA GVGGH+T+LRRTRVGRFELDQA SL+DLAE P LS +LDE CLLMF RR
Sbjct: 180 RALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARR 239

Query: 251 DLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           DLT +E  A +NGR + + GIDG+YAA DADGRVIALLRDEG RT+SV VL P
Sbjct: 240 DLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRP 292


>sp|A1KMD6|TRUB_MYCBP Tax_Id=410289 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Mycobacterium bovis]
          Length = 298

 Score =  427 bits (1097), Expect = e-117
 Identities = 217/293 (74%), Positives = 249/293 (84%), Gaps = 5/293 (1%)

Query: 11  GPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLA 70
           GPGIVVIDKP+GMTSHDVV RCRRIF TRRVGHAGTLDPMATGVLV+G++RATKILGLL 
Sbjct: 5   GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64

Query: 71  GASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAI 130
            A K Y ATIRLGQTTSTEDAEG++LQ V A+H+T EAI  A+ RLRG+I+QVPS+VSAI
Sbjct: 65  AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124

Query: 131 KVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYI 190
           KV GRRAYRL R+G  V+L+ARP+RIDRFE+LA R   +     +ID+DVE++CSSGTYI
Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ-----LIDIDVEIDCSSGTYI 179

Query: 191 RALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRR 250
           RALARDLGDA GVGGH+T+LRRTRVGRFELDQA SL+DLAE P LS +LDE CLLMF RR
Sbjct: 180 RALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARR 239

Query: 251 DLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           DLT +E  A +NGR + + GIDG+YAA DADGRVIALLRDEG RT+SV VL P
Sbjct: 240 DLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRP 292


>sp|P62189|TRUB_MYCBO Tax_Id=1765 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Mycobacterium bovis]
          Length = 298

 Score =  427 bits (1097), Expect = e-117
 Identities = 217/293 (74%), Positives = 249/293 (84%), Gaps = 5/293 (1%)

Query: 11  GPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLA 70
           GPGIVVIDKP+GMTSHDVV RCRRIF TRRVGHAGTLDPMATGVLV+G++RATKILGLL 
Sbjct: 5   GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64

Query: 71  GASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAI 130
            A K Y ATIRLGQTTSTEDAEG++LQ V A+H+T EAI  A+ RLRG+I+QVPS+VSAI
Sbjct: 65  AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124

Query: 131 KVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYI 190
           KV GRRAYRL R+G  V+L+ARP+RIDRFE+LA R   +     +ID+DVE++CSSGTYI
Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ-----LIDIDVEIDCSSGTYI 179

Query: 191 RALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRR 250
           RALARDLGDA GVGGH+T+LRRTRVGRFELDQA SL+DLAE P LS +LDE CLLMF RR
Sbjct: 180 RALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARR 239

Query: 251 DLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           DLT +E  A +NGR + + GIDG+YAA DADGRVIALLRDEG RT+SV VL P
Sbjct: 240 DLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRP 292


>tr|C6DX50|C6DX50_MYCTK Tax_Id=478434 SubName: Full=tRNA
           pseudouridine synthase B truB;[Mycobacterium
           tuberculosis]
          Length = 298

 Score =  427 bits (1097), Expect = e-117
 Identities = 217/293 (74%), Positives = 249/293 (84%), Gaps = 5/293 (1%)

Query: 11  GPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLA 70
           GPGIVVIDKP+GMTSHDVV RCRRIF TRRVGHAGTLDPMATGVLV+G++RATKILGLL 
Sbjct: 5   GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64

Query: 71  GASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAI 130
            A K Y ATIRLGQTTSTEDAEG++LQ V A+H+T EAI  A+ RLRG+I+QVPS+VSAI
Sbjct: 65  AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124

Query: 131 KVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYI 190
           KV GRRAYRL R+G  V+L+ARP+RIDRFE+LA R   +     +ID+DVE++CSSGTYI
Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ-----LIDIDVEIDCSSGTYI 179

Query: 191 RALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRR 250
           RALARDLGDA GVGGH+T+LRRTRVGRFELDQA SL+DLAE P LS +LDE CLLMF RR
Sbjct: 180 RALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARR 239

Query: 251 DLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           DLT +E  A +NGR + + GIDG+YAA DADGRVIALLRDEG RT+SV VL P
Sbjct: 240 DLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRP 292


>tr|C1AFQ7|C1AFQ7_MYCBT Tax_Id=561275 (truB)SubName: Full=tRNA
           pseudouridine synthase B; EC=4.2.1.70;[Mycobacterium
           bovis]
          Length = 298

 Score =  427 bits (1097), Expect = e-117
 Identities = 217/293 (74%), Positives = 249/293 (84%), Gaps = 5/293 (1%)

Query: 11  GPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLA 70
           GPGIVVIDKP+GMTSHDVV RCRRIF TRRVGHAGTLDPMATGVLV+G++RATKILGLL 
Sbjct: 5   GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64

Query: 71  GASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAI 130
            A K Y ATIRLGQTTSTEDAEG++LQ V A+H+T EAI  A+ RLRG+I+QVPS+VSAI
Sbjct: 65  AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124

Query: 131 KVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYI 190
           KV GRRAYRL R+G  V+L+ARP+RIDRFE+LA R   +     +ID+DVE++CSSGTYI
Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ-----LIDIDVEIDCSSGTYI 179

Query: 191 RALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRR 250
           RALARDLGDA GVGGH+T+LRRTRVGRFELDQA SL+DLAE P LS +LDE CLLMF RR
Sbjct: 180 RALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARR 239

Query: 251 DLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           DLT +E  A +NGR + + GIDG+YAA DADGRVIALLRDEG RT+SV VL P
Sbjct: 240 DLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRP 292


>tr|A5WR44|A5WR44_MYCTF Tax_Id=336982 SubName: Full=tRNA
           pseudouridine synthase B truB;[Mycobacterium
           tuberculosis]
          Length = 298

 Score =  427 bits (1097), Expect = e-117
 Identities = 217/293 (74%), Positives = 249/293 (84%), Gaps = 5/293 (1%)

Query: 11  GPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLA 70
           GPGIVVIDKP+GMTSHDVV RCRRIF TRRVGHAGTLDPMATGVLV+G++RATKILGLL 
Sbjct: 5   GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64

Query: 71  GASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAI 130
            A K Y ATIRLGQTTSTEDAEG++LQ V A+H+T EAI  A+ RLRG+I+QVPS+VSAI
Sbjct: 65  AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124

Query: 131 KVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYI 190
           KV GRRAYRL R+G  V+L+ARP+RIDRFE+LA R   +     +ID+DVE++CSSGTYI
Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ-----LIDIDVEIDCSSGTYI 179

Query: 191 RALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRR 250
           RALARDLGDA GVGGH+T+LRRTRVGRFELDQA SL+DLAE P LS +LDE CLLMF RR
Sbjct: 180 RALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARR 239

Query: 251 DLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           DLT +E  A +NGR + + GIDG+YAA DADGRVIALLRDEG RT+SV VL P
Sbjct: 240 DLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRP 292


>tr|A4KK67|A4KK67_MYCTU Tax_Id=395095 SubName: Full=TRNA
           pseudouridine synthase B truB;[Mycobacterium
           tuberculosis str. Haarlem]
          Length = 298

 Score =  427 bits (1097), Expect = e-117
 Identities = 217/293 (74%), Positives = 249/293 (84%), Gaps = 5/293 (1%)

Query: 11  GPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLA 70
           GPGIVVIDKP+GMTSHDVV RCRRIF TRRVGHAGTLDPMATGVLV+G++RATKILGLL 
Sbjct: 5   GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64

Query: 71  GASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAI 130
            A K Y ATIRLGQTTSTEDAEG++LQ V A+H+T EAI  A+ RLRG+I+QVPS+VSAI
Sbjct: 65  AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124

Query: 131 KVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYI 190
           KV GRRAYRL R+G  V+L+ARP+RIDRFE+LA R   +     +ID+DVE++CSSGTYI
Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ-----LIDIDVEIDCSSGTYI 179

Query: 191 RALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRR 250
           RALARDLGDA GVGGH+T+LRRTRVGRFELDQA SL+DLAE P LS +LDE CLLMF RR
Sbjct: 180 RALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARR 239

Query: 251 DLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           DLT +E  A +NGR + + GIDG+YAA DADGRVIALLRDEG RT+SV VL P
Sbjct: 240 DLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRP 292


>tr|A2VLC7|A2VLC7_MYCTU Tax_Id=348776 SubName: Full=TRNA
           pseudouridine synthase B truB;[Mycobacterium
           tuberculosis C]
          Length = 298

 Score =  427 bits (1097), Expect = e-117
 Identities = 217/293 (74%), Positives = 249/293 (84%), Gaps = 5/293 (1%)

Query: 11  GPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLA 70
           GPGIVVIDKP+GMTSHDVV RCRRIF TRRVGHAGTLDPMATGVLV+G++RATKILGLL 
Sbjct: 5   GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64

Query: 71  GASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAI 130
            A K Y ATIRLGQTTSTEDAEG++LQ V A+H+T EAI  A+ RLRG+I+QVPS+VSAI
Sbjct: 65  AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124

Query: 131 KVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYI 190
           KV GRRAYRL R+G  V+L+ARP+RIDRFE+LA R   +     +ID+DVE++CSSGTYI
Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ-----LIDIDVEIDCSSGTYI 179

Query: 191 RALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRR 250
           RALARDLGDA GVGGH+T+LRRTRVGRFELDQA SL+DLAE P LS +LDE CLLMF RR
Sbjct: 180 RALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARR 239

Query: 251 DLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           DLT +E  A +NGR + + GIDG+YAA DADGRVIALLRDEG RT+SV VL P
Sbjct: 240 DLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRP 292


>sp|Q73VW3|TRUB_MYCPA Tax_Id=1770 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Mycobacterium
           paratuberculosis]
          Length = 293

 Score =  411 bits (1057), Expect = e-113
 Identities = 210/292 (71%), Positives = 241/292 (82%), Gaps = 5/292 (1%)

Query: 12  PGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAG 71
           PG+VV+DKP+GMTSHDVV RCRRIF TRRVGHAGTLDPMATGVLVLGV+RATKILGLL  
Sbjct: 4   PGLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTA 63

Query: 72  ASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIK 131
           A+K Y ATIRLGQ TST+DAEG++ + V ARH+T +AI  A+G LRGDI QVPS VSAIK
Sbjct: 64  AAKSYSATIRLGQATSTDDAEGDVARSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIK 123

Query: 132 VDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIR 191
           V G+RAY+LVREG  VEL ARPVRIDRFEV  +R          +D+DVEV+CSSGTY+R
Sbjct: 124 VAGKRAYKLVREGQAVELPARPVRIDRFEVRGLR-----AAGACVDVDVEVDCSSGTYVR 178

Query: 192 ALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRD 251
           ALARDLG A GVGGHLT+LRRTRVGRF L+QA+ L++LAE PRLS +LDE CLL+F RRD
Sbjct: 179 ALARDLGAALGVGGHLTALRRTRVGRFGLEQAYGLDELAECPRLSYSLDEACLLIFGRRD 238

Query: 252 LTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           L+  E EA  NGR +++AGIDG+YAA   DGRVIALLRDEG RTKSVVVL P
Sbjct: 239 LSADEAEAAGNGRALAAAGIDGVYAACAPDGRVIALLRDEGARTKSVVVLRP 290


>sp|A0QIX1|TRUB_MYCA1 Tax_Id=243243 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Mycobacterium avium]
          Length = 309

 Score =  403 bits (1035), Expect = e-110
 Identities = 209/303 (68%), Positives = 243/303 (80%), Gaps = 16/303 (5%)

Query: 12  PGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAG 71
           PG+VV+DKP+GMTSHDVV RCRRIF TRRVGHAGTLDPMATGVLVLGV+RATKILGLL  
Sbjct: 4   PGLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTA 63

Query: 72  ASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIK 131
           A+K Y ATIRLGQ TST+DAEG++++ V ARH+T +AI  A+G LRGDI QVPS VSAIK
Sbjct: 64  AAKSYSATIRLGQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIK 123

Query: 132 VDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIR 191
           V G+RAY+LVREG  VEL ARPVRIDRFEV  +R   E      +D+DVEV+CSSGTY+R
Sbjct: 124 VAGKRAYKLVREGQAVELPARPVRIDRFEVRDLRAAGE-----CVDVDVEVDCSSGTYVR 178

Query: 192 ALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRD 251
           ALARDLG A GVGGHLT+LRRTRVGRF L+QA+ L++LAE PRLS +LDE CLL+F RRD
Sbjct: 179 ALARDLGAALGVGGHLTALRRTRVGRFGLEQAYGLDELAECPRLSYSLDEACLLIFGRRD 238

Query: 252 LTVSEVE-----------ATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVV 300
           L+  E E           A  NGR +++AGIDG+YAA   DGRVIALLRDEG RT+SVVV
Sbjct: 239 LSADEAEAAGNGRALAAAAAGNGRALAAAGIDGVYAACAPDGRVIALLRDEGARTRSVVV 298

Query: 301 LHP 303
           + P
Sbjct: 299 IRP 301


>tr|A1T7J3|A1T7J3_MYCVP Tax_Id=350058 SubName: Full=tRNA
           pseudouridine synthase B; EC=4.2.1.70;[Mycobacterium
           vanbaalenii]
          Length = 302

 Score =  392 bits (1008), Expect = e-107
 Identities = 203/292 (69%), Positives = 236/292 (80%), Gaps = 5/292 (1%)

Query: 12  PGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAG 71
           PG+VV+DKP GMTSHDVV RCRR+F TR+VGHAGTLDPMATGVLV+G++RATKILGLL  
Sbjct: 13  PGLVVVDKPGGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTA 72

Query: 72  ASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIK 131
             K Y ATIRLGQTTSTEDAEGE+LQ VSA  VTD  I  AI  LRG I Q+PSAVSAIK
Sbjct: 73  TDKSYAATIRLGQTTSTEDAEGEVLQSVSAAEVTDAQIEAAIAPLRGPIDQIPSAVSAIK 132

Query: 132 VDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIR 191
           + G+RAY++VR+G  VEL ARPVRIDRFEVL VR   E     ++D+DV V+CSSGTYIR
Sbjct: 133 IAGKRAYQMVRDGQTVELAARPVRIDRFEVLEVRRDGE-----LVDVDVAVDCSSGTYIR 187

Query: 192 ALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRD 251
           ALARD+G A GVGGHLT+LRRTRVG F L+QA +L++LAE PRLS +LDE CL  F RRD
Sbjct: 188 ALARDVGAALGVGGHLTALRRTRVGGFGLEQARTLDELAEAPRLSYSLDEACLRAFARRD 247

Query: 252 LTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           +T +E E+ S+GR +  AGIDG+YAA+  DGRVIALL DEG RT+SVVVL P
Sbjct: 248 ITEAEAESASHGRALPVAGIDGVYAATAPDGRVIALLSDEGDRTRSVVVLRP 299


>tr|A0QVP8|A0QVP8_MYCS2 Tax_Id=246196 (truB)SubName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-;[Mycobacterium
           smegmatis]
          Length = 303

 Score =  392 bits (1008), Expect = e-107
 Identities = 199/296 (67%), Positives = 241/296 (81%), Gaps = 2/296 (0%)

Query: 8   AGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILG 67
           +G  PG+V++DKP+GMTSHDVV RCRR+F TR+VGHAGTLDPMATGVLV+G++RATKILG
Sbjct: 7   SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66

Query: 68  LLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAV 127
           LL    K Y ATIRLG+TT+TEDAEGE+++ V AR VTDE I  A+  LRGDI+QVPSAV
Sbjct: 67  LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126

Query: 128 SAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSG 187
           SAIKV G+RAY+L REG  VEL ARPVRIDRF+VL +R   +    D +D+DVEV+CSSG
Sbjct: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRPDD--FPDFVDVDVEVDCSSG 184

Query: 188 TYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMF 247
           TYIRALARD+G A GVGGHLT LRRTRVGR+ LD+A +L++LAE P+LS +LD  CL+ F
Sbjct: 185 TYIRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGF 244

Query: 248 PRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           PRRDL+  E E T +GRP+  AGIDG+YAA+  DGRVIALL+D   RT++VVVL P
Sbjct: 245 PRRDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRP 300


>sp|Q1BA81|TRUB_MYCSS Tax_Id=164756 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Mycobacterium sp.]
          Length = 297

 Score =  389 bits (1000), Expect = e-106
 Identities = 200/298 (67%), Positives = 238/298 (79%), Gaps = 5/298 (1%)

Query: 6   TGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKI 65
           +GAG+G GIV++DKP+GMTSHDVV RCRRIF TR+VGHAGTLDPMATGVLV+G+DRATK+
Sbjct: 2   SGAGVGGGIVIVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKL 61

Query: 66  LGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPS 125
           LGLL    K Y ATIRLGQTT+TEDAEG++++   A  +TDE I  A+  LRG+I QVPS
Sbjct: 62  LGLLTATDKSYEATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEIDQVPS 121

Query: 126 AVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECS 185
           AVSAIKV G+RAY+L REG  VEL AR VRIDRFEVLA+R      +   +D+DV V+CS
Sbjct: 122 AVSAIKVGGQRAYKLAREGQTVELAARRVRIDRFEVLAIR-----RVDGFVDVDVAVDCS 176

Query: 186 SGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLL 245
           SGTYIRALARD+G   GVGGHLT LRRTRVGRF LD+A+ L+ LA+ PRLS +LDE CLL
Sbjct: 177 SGTYIRALARDVGVTLGVGGHLTLLRRTRVGRFGLDEAYPLDALADEPRLSHSLDEACLL 236

Query: 246 MFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
            FPRRDLT +E E+T +GR ++ AGIDG+YAA+  DG V+ALL D   RTKSVVVL P
Sbjct: 237 SFPRRDLTPAEAESTRHGRALAPAGIDGVYAAAAPDGSVLALLEDGPQRTKSVVVLRP 294


>sp|A1UET1|TRUB_MYCSK Tax_Id=189918 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Mycobacterium sp.]
          Length = 297

 Score =  389 bits (1000), Expect = e-106
 Identities = 200/298 (67%), Positives = 238/298 (79%), Gaps = 5/298 (1%)

Query: 6   TGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKI 65
           +GAG+G GIV++DKP+GMTSHDVV RCRRIF TR+VGHAGTLDPMATGVLV+G+DRATK+
Sbjct: 2   SGAGVGGGIVIVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKL 61

Query: 66  LGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPS 125
           LGLL    K Y ATIRLGQTT+TEDAEG++++   A  +TDE I  A+  LRG+I QVPS
Sbjct: 62  LGLLTATDKSYEATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEIDQVPS 121

Query: 126 AVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECS 185
           AVSAIKV G+RAY+L REG  VEL AR VRIDRFEVLA+R      +   +D+DV V+CS
Sbjct: 122 AVSAIKVGGQRAYKLAREGQTVELAARRVRIDRFEVLAIR-----RVDGFVDVDVAVDCS 176

Query: 186 SGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLL 245
           SGTYIRALARD+G   GVGGHLT LRRTRVGRF LD+A+ L+ LA+ PRLS +LDE CLL
Sbjct: 177 SGTYIRALARDVGVTLGVGGHLTLLRRTRVGRFGLDEAYPLDALADEPRLSHSLDEACLL 236

Query: 246 MFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
            FPRRDLT +E E+T +GR ++ AGIDG+YAA+  DG V+ALL D   RTKSVVVL P
Sbjct: 237 SFPRRDLTPAEAESTRHGRALAPAGIDGVYAAAAPDGSVLALLEDGPQRTKSVVVLRP 294


>sp|A3PY88|TRUB_MYCSJ Tax_Id=164757 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Mycobacterium sp.]
          Length = 297

 Score =  389 bits (1000), Expect = e-106
 Identities = 200/298 (67%), Positives = 238/298 (79%), Gaps = 5/298 (1%)

Query: 6   TGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKI 65
           +GAG+G GIV++DKP+GMTSHDVV RCRRIF TR+VGHAGTLDPMATGVLV+G+DRATK+
Sbjct: 2   SGAGVGGGIVIVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKL 61

Query: 66  LGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPS 125
           LGLL    K Y ATIRLGQTT+TEDAEG++++   A  +TDE I  A+  LRG+I QVPS
Sbjct: 62  LGLLTATDKSYEATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEIDQVPS 121

Query: 126 AVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECS 185
           AVSAIKV G+RAY+L REG  VEL AR VRIDRFEVLA+R      +   +D+DV V+CS
Sbjct: 122 AVSAIKVGGQRAYKLAREGQTVELAARRVRIDRFEVLAIR-----RVDGFVDVDVAVDCS 176

Query: 186 SGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLL 245
           SGTYIRALARD+G   GVGGHLT LRRTRVGRF LD+A+ L+ LA+ PRLS +LDE CLL
Sbjct: 177 SGTYIRALARDVGVTLGVGGHLTLLRRTRVGRFGLDEAYPLDALADEPRLSHSLDEACLL 236

Query: 246 MFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
            FPRRDLT +E E+T +GR ++ AGIDG+YAA+  DG V+ALL D   RTKSVVVL P
Sbjct: 237 SFPRRDLTPAEAESTRHGRALAPAGIDGVYAAAAPDGSVLALLEDGPQRTKSVVVLRP 294


>tr|A4TCH2|A4TCH2_MYCGI Tax_Id=350054 SubName: Full=tRNA
           pseudouridine synthase B; EC=4.2.1.70;[Mycobacterium
           gilvum]
          Length = 294

 Score =  388 bits (997), Expect = e-106
 Identities = 201/292 (68%), Positives = 234/292 (80%), Gaps = 5/292 (1%)

Query: 12  PGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAG 71
           PG+VV+DKP GMTSHDVV RCRR+F TR+VGHAGTLDPMATGVLV+G++RATKILGLL  
Sbjct: 5   PGLVVVDKPGGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTA 64

Query: 72  ASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIK 131
             K Y AT+RLGQTTSTED EGELL  VSA  VTDE I  AI  LRG I+QVPSAVSAIK
Sbjct: 65  TDKSYTATLRLGQTTSTEDTEGELLHQVSAAQVTDEQIERAIAPLRGAIEQVPSAVSAIK 124

Query: 132 VDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIR 191
           + G+RAY++VR+G  VE+ ARPVRIDRFEVLAVR        DV+D+DV V+CSSGTYIR
Sbjct: 125 IAGKRAYQMVRDGEQVEIPARPVRIDRFEVLAVRRN-----GDVVDVDVVVDCSSGTYIR 179

Query: 192 ALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRD 251
           ALARD+G A GVGGHLT+LRRTRVG F LDQA +LE LA+   LS +LDE CL  FPRR+
Sbjct: 180 ALARDVGAALGVGGHLTALRRTRVGGFGLDQARTLEQLADAAELSYSLDEACLHAFPRRE 239

Query: 252 LTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           LT +EV    +GR ++ AGIDG+YAA+  DGRV+ALL D GPRT+SVVV+ P
Sbjct: 240 LTDAEVVDAGHGRSLAPAGIDGVYAATAPDGRVMALLEDAGPRTRSVVVIRP 291


>sp|B1MD72|TRUB_MYCA9 Tax_Id=561007 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Mycobacterium
           abscessus]
          Length = 298

 Score =  383 bits (983), Expect = e-104
 Identities = 197/291 (67%), Positives = 235/291 (80%), Gaps = 4/291 (1%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           G+V++DKP+GMTSHDVV+RCRRIF TR+VGHAGTLDPMATGVLV+G++RATKI+GLL   
Sbjct: 9   GLVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLT 68

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
           +K Y ATIR GQ+TST+DAEGE+LQ +SA H+T+  I  A+  LRGDI QVPS+VSAIKV
Sbjct: 69  TKSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKV 128

Query: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192
           DG+RAY+L REG  VEL ARPVRI RF+VLAVR   E    D+ID+DVE++CSSGTYIRA
Sbjct: 129 DGQRAYKLAREGQSVELAARPVRISRFDVLAVRGSGE----DLIDVDVEIDCSSGTYIRA 184

Query: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRDL 252
           LARD G A GVGGHLT+LRRTRVG F LD+A +LE+LA+   L+  LD  C   FPRRDL
Sbjct: 185 LARDAGAALGVGGHLTALRRTRVGDFGLDRARTLEELADGATLTLDLDSACRQGFPRRDL 244

Query: 253 TVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
             +EV+A  NGRP++ AGI+G YAA DAD RVIALL D+G RT SVVVL P
Sbjct: 245 DAAEVDAVRNGRPLAPAGIEGTYAAVDADDRVIALLADKGSRTTSVVVLRP 295


>tr|C0ZYB2|C0ZYB2_RHOE4 Tax_Id=234621 (truB)SubName: Full=tRNA
           pseudouridine synthase TruB; EC=5.4.99.12;[Rhodococcus
           erythropolis]
          Length = 306

 Score =  332 bits (850), Expect = 5e-89
 Identities = 175/301 (58%), Positives = 215/301 (71%), Gaps = 4/301 (1%)

Query: 3   ESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRA 62
           E  +   +G GI+++DK +G+TSHDVVARCR++  TR+VGHAGTLDPMATGVLVLGV+RA
Sbjct: 5   EKPSSGLVGAGILIVDKEAGITSHDVVARCRKLLNTRKVGHAGTLDPMATGVLVLGVERA 64

Query: 63  TKILGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQ 122
           TK+LGLLA  +K Y ATIRLG  T T+DAEGE+L    A  VTD  IA  +  L GDIKQ
Sbjct: 65  TKLLGLLALTTKAYSATIRLGAATDTDDAEGEVLTSADASQVTDAEIAAIVATLTGDIKQ 124

Query: 123 VPSAVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEV 182
           +P++VSAIKVDG+RA+ LVR G  VEL  RPV +  FEVLA R  P       +DLDV+V
Sbjct: 125 IPASVSAIKVDGQRAHALVRAGETVELAPRPVTVSTFEVLARRDVP----GGFVDLDVDV 180

Query: 183 ECSSGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDET 242
           ECSSGTYIR+LARDLG   GVGGHLT+LRRTRVG F L+ A +LEDLA+ P +S  +D+ 
Sbjct: 181 ECSSGTYIRSLARDLGRELGVGGHLTALRRTRVGPFTLEHARTLEDLADQPGVSLDIDQA 240

Query: 243 CLLMFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLH 302
               FP R +T  E EA S GR +   G+ GI AA D  G  IALL+++G R  SV+V+ 
Sbjct: 241 AQTAFPHRQITAEEAEAISQGRWLEPIGMKGICAAIDPTGHTIALLQEKGRRASSVMVVR 300

Query: 303 P 303
           P
Sbjct: 301 P 301


>tr|C3JK60|C3JK60_RHOER Tax_Id=596309 (truB)SubName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-;[Rhodococcus
           erythropolis SK121]
          Length = 306

 Score =  331 bits (848), Expect = 8e-89
 Identities = 175/301 (58%), Positives = 214/301 (71%), Gaps = 4/301 (1%)

Query: 3   ESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRA 62
           E  +   +G GI+++DK +G+TSHDVVARCR++  TR+VGHAGTLDPMATGVLVLGV+RA
Sbjct: 5   EKPSSGLVGAGILIVDKEAGITSHDVVARCRKLLNTRKVGHAGTLDPMATGVLVLGVERA 64

Query: 63  TKILGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQ 122
           TK+LGLLA  +K Y ATIRLG  T T+DAEGE+L    A  VTD  IA  +  L GDIKQ
Sbjct: 65  TKLLGLLALTTKAYSATIRLGAATDTDDAEGEVLTSADASQVTDAEIAAIVATLTGDIKQ 124

Query: 123 VPSAVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEV 182
           +P++VSAIKVDG+RA+ LVR G  VEL  RPV +  FEVLA R  P       +DLDV+V
Sbjct: 125 IPASVSAIKVDGQRAHALVRAGETVELAPRPVTVSTFEVLARRDVP----GGFVDLDVDV 180

Query: 183 ECSSGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDET 242
           ECSSGTYIR+LARDLG   GVGGHLT+LRRTRVG F L+ A +LEDLA  P +S  +D+ 
Sbjct: 181 ECSSGTYIRSLARDLGRELGVGGHLTALRRTRVGPFTLEHARTLEDLAHQPGVSLDIDQA 240

Query: 243 CLLMFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLH 302
               FP R +T  E EA S GR +   G+ GI AA D  G  IALL+++G R  SV+V+ 
Sbjct: 241 AQTAFPHRQITAEEAEAISQGRWLEPIGMKGICAAIDPTGHTIALLQEKGRRASSVMVVR 300

Query: 303 P 303
           P
Sbjct: 301 P 301


>tr|C6WDK2|C6WDK2_ACTMD Tax_Id=446462 SubName: Full=tRNA
           pseudouridine synthase B;[Actinosynnema mirum]
          Length = 299

 Score =  326 bits (836), Expect = 2e-87
 Identities = 173/292 (59%), Positives = 213/292 (72%), Gaps = 5/292 (1%)

Query: 12  PGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAG 71
           PG+VV+DKP GMTSHDVVA+ RRI  TR+VGHAGTLDPMATGVLVLGV+RATK+LG LA 
Sbjct: 11  PGLVVVDKPDGMTSHDVVAKVRRILGTRKVGHAGTLDPMATGVLVLGVERATKLLGHLAL 70

Query: 72  ASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIK 131
            SK Y++TIRLG +T+T+DAEGE+L    +  V ++AI   + +L G I+QVPSAVSA+K
Sbjct: 71  DSKAYLSTIRLGASTTTDDAEGEVLSSADSTAVPEDAIRAGVAKLTGAIQQVPSAVSAVK 130

Query: 132 VDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIR 191
           VDG+RAY  VR G  VEL  RPV + RF+VL++R       AD  +LDV VECSSGTY+R
Sbjct: 131 VDGKRAYARVRAGEEVELPPRPVTVHRFDVLSIRRE-----ADATELDVMVECSSGTYVR 185

Query: 192 ALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRD 251
           ALARDLG   GVGGHL +LRRTRVG F+L  A +LE LA+ P LS  LD      FPRR+
Sbjct: 186 ALARDLGVDLGVGGHLAALRRTRVGPFDLRVAKTLEQLADEPGLSLDLDAAVSAAFPRRE 245

Query: 252 LTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           +T SEV A S+G+ + + G++G Y     DG  +AL +DEGP  K VVVL P
Sbjct: 246 ITPSEVVALSHGQRLRAGGVEGTYGVFGPDGHAVALAKDEGPLAKPVVVLTP 297


>sp|Q5YSE0|TRUB_NOCFA Tax_Id=37329 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Nocardia farcinica]
          Length = 306

 Score =  325 bits (834), Expect = 3e-87
 Identities = 171/291 (58%), Positives = 208/291 (71%), Gaps = 5/291 (1%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           G++V+DK  GMTSHDVVARCR+I  TR++GHAGTLDPMATGVLVLGV+RATK+LGLL   
Sbjct: 16  GLLVVDKDGGMTSHDVVARCRKILGTRKIGHAGTLDPMATGVLVLGVERATKLLGLLTLT 75

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
           +K Y ATIRLG  T+T+DAEGE+L  V A H+ D  +A  +  L GDI+QVP+ VSAIK+
Sbjct: 76  TKAYTATIRLGSATTTDDAEGEVLTTVPAGHLGDAEVAAGVAALTGDIQQVPATVSAIKI 135

Query: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192
            G RAY   R G  VEL ARPV + RFEVLA R      +A  +DLDV VECSSGTY+RA
Sbjct: 136 GGERAYARHRAGEQVELAARPVTVSRFEVLARR-----DVAGFVDLDVVVECSSGTYVRA 190

Query: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRDL 252
           LARDLG A GVGGHLT+LRRTRVG F LD A +L+ LA+ PRL+  +DE   + FP R +
Sbjct: 191 LARDLGAALGVGGHLTALRRTRVGPFTLDHARTLDALADEPRLNLDMDEAVRIAFPHRAI 250

Query: 253 TVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
              E E+  +GR +   GI G+YAA  ADG  IALL ++G R   V V+ P
Sbjct: 251 DAREAESLRDGRWLDPVGIPGVYAALTADGTAIALLEEKGKRASPVFVVRP 301


>tr|C1B320|C1B320_RHOOB Tax_Id=632772 (truB)SubName: Full=tRNA
           pseudouridine synthase TruB; EC=5.4.99.12;[Rhodococcus
           opacus]
          Length = 305

 Score =  324 bits (831), Expect = 7e-87
 Identities = 174/303 (57%), Positives = 215/303 (70%), Gaps = 8/303 (2%)

Query: 3   ESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRA 62
           E  +   +G G++++DK +G+TSHDVVARCR++  TR+VGHAGTLDPMATGVLVLGV+RA
Sbjct: 5   EKPSSGLVGAGLLIVDKDAGVTSHDVVARCRKLLGTRKVGHAGTLDPMATGVLVLGVERA 64

Query: 63  TKILGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQ 122
           TK+LGLLA  +K Y ATIRLGQ T+T+DAEGE++    A  V DE IA  +  L GDI+Q
Sbjct: 65  TKLLGLLALTTKAYTATIRLGQATTTDDAEGEIVASADASGVRDEEIAAQVRTLTGDIQQ 124

Query: 123 VPSAVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVR-PGPEVGLADVIDLDVE 181
           +PS+VSAIKVDGRRA+ L+R G   EL  R V + RF+V+A R  GP       +DLDVE
Sbjct: 125 IPSSVSAIKVDGRRAHALIRAGEEFELAPRSVTVSRFDVVARRTEGP------FVDLDVE 178

Query: 182 VECSSGTYIRALARDLGDA-FGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLD 240
           VECSSGTY+RALARDLG A  GVGGHLTSLRRTRVG F L+ A +LE LAE P +S  +D
Sbjct: 179 VECSSGTYVRALARDLGIALIGVGGHLTSLRRTRVGPFTLEHARTLEQLAEEPGVSLDID 238

Query: 241 ETCLLMFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVV 300
                 FP R +   E EA S GR +   G+ G+YAA D  G  IALL++ G R  SV+V
Sbjct: 239 SAAQTAFPHRQIDADEAEAISQGRWLEPIGMKGVYAAIDPSGHTIALLQERGKRASSVMV 298

Query: 301 LHP 303
           + P
Sbjct: 299 VRP 301


>sp|Q0S212|TRUB_RHOSR Tax_Id=101510 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Rhodococcus sp.]
          Length = 305

 Score =  322 bits (825), Expect = 4e-86
 Identities = 172/302 (56%), Positives = 213/302 (70%), Gaps = 6/302 (1%)

Query: 3   ESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRA 62
           E  +   +G G++++DK +G+TSHDVVARCR++  TR+VGHAGTLDPMATGVLVLGV+RA
Sbjct: 5   EKPSSGLVGAGLLIVDKDAGVTSHDVVARCRKLLGTRKVGHAGTLDPMATGVLVLGVERA 64

Query: 63  TKILGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQ 122
           TK+LG LA  +K Y ATIRLGQ T+T+DAEGE++    A  VTDE IA  +  L GDI+Q
Sbjct: 65  TKLLGFLALTTKAYTATIRLGQATTTDDAEGEVVASADASGVTDEEIAAQVHTLTGDIQQ 124

Query: 123 VPSAVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEV 182
           +PS+VSAIKVDGRRA+ L+R G   EL  R V + RFEV+A R          +D+DVEV
Sbjct: 125 IPSSVSAIKVDGRRAHALIRAGEEFELAPRSVTVSRFEVVARRTE-----GAFVDVDVEV 179

Query: 183 ECSSGTYIRALARDLGDA-FGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDE 241
           ECSSGTY+RALARDLG A  GVGGHLTSLRRTRVG F L+ A +LE LAE P +S  +D 
Sbjct: 180 ECSSGTYVRALARDLGIALIGVGGHLTSLRRTRVGPFTLEHARTLEQLAEEPGVSLDIDA 239

Query: 242 TCLLMFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVL 301
                FP R +   E E+ S GR +   GI G+YAA D  G  IALL++ G R  SV+V+
Sbjct: 240 AAQTAFPHRQVDADEAESISQGRWLEPIGIKGVYAAIDPSGHTIALLQERGRRASSVMVV 299

Query: 302 HP 303
            P
Sbjct: 300 RP 301


>tr|C2ANZ2|C2ANZ2_TSUPA Tax_Id=521096 SubName: Full=tRNA
           pseudouridine synthase B; EC=4.2.1.70;[Tsukamurella
           paurometabola DSM 20162]
          Length = 297

 Score =  312 bits (799), Expect = 4e-83
 Identities = 165/293 (56%), Positives = 209/293 (71%), Gaps = 5/293 (1%)

Query: 11  GPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLA 70
           G G++++DKP+G+TSHDVVARCRR   TR+VGHAGTLDPMATGVLV+G++RATK+LG LA
Sbjct: 8   GAGLIIVDKPAGLTSHDVVARCRRAMGTRKVGHAGTLDPMATGVLVIGIERATKLLGHLA 67

Query: 71  GASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAI 130
             +K Y AT+RLG +TST+DAEGE+    +A  ++D  +  A+  L GDI+QVPS VSAI
Sbjct: 68  LTTKAYSATVRLGASTSTDDAEGEITGGAAAAGLSDADVIAAMAPLTGDIEQVPSTVSAI 127

Query: 131 KVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYI 190
           KVDG+RA++LVREG  V+L ARPVR+D F   A R        D +D+DV VECSSGTY+
Sbjct: 128 KVDGKRAHQLVREGADVQLTARPVRVDEFAAHAFRRD-----GDFLDVDVHVECSSGTYV 182

Query: 191 RALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRR 250
           RALARDLG A GVGGHLT+LRRTRVG + LD A +L++L E PRLS  +D      F  R
Sbjct: 183 RALARDLGAALGVGGHLTALRRTRVGPYGLDLAVTLDELFETPRLSYDIDAAIATGFAVR 242

Query: 251 DLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           ++T  +    S GR +   G+ G+YAA    GR IALL + G R  SV V+ P
Sbjct: 243 EITDEQAVDLSLGRWLDPIGMPGVYAAVAPGGRAIALLEESGNRASSVFVVRP 295


>tr|C7MQV8|C7MQV8_SACVD Tax_Id=471857 SubName: Full=tRNA
           pseudouridine synthase B;[Saccharomonospora viridis]
          Length = 295

 Score =  306 bits (785), Expect = 2e-81
 Identities = 168/291 (57%), Positives = 199/291 (68%), Gaps = 5/291 (1%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           G++++DKP GMTSHDVVA+ RR   TR+VGHAGTLDPMATGVLVLGV RATK+LG LA  
Sbjct: 9   GLLIVDKPGGMTSHDVVAKVRRFLRTRKVGHAGTLDPMATGVLVLGVGRATKLLGHLALD 68

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
            K Y+ATI LG  T+T+DAEGE+     A  V D  IA  I  L GDI Q PSAVSA+KV
Sbjct: 69  RKAYLATIVLGAATTTDDAEGEVTSSADASGVRDSDIAAEIAALTGDILQKPSAVSAVKV 128

Query: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192
           DG+RAY  VR G  V+L ARPV + RF+VLA R          ++LDV V+CSSGTY+RA
Sbjct: 129 DGKRAYARVRAGEEVDLPARPVTVHRFDVLATRRE-----GQRVELDVMVDCSSGTYVRA 183

Query: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRDL 252
           LARDLG A GVGGHL +LRRT VG F L QA +L+++   P LS +L E     FPR D+
Sbjct: 184 LARDLGSALGVGGHLAALRRTSVGPFTLAQARTLDEVERAPGLSLSLSEAVAAAFPRVDV 243

Query: 253 TVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
             S   A  +G+ I +AGIDG Y     DGRV+AL RD G   KSVVVL P
Sbjct: 244 AASAAHAIRHGQRIPAAGIDGTYGVFGPDGRVLALARDSGRVAKSVVVLDP 294


>tr|D0LBJ3|D0LBJ3_9ACTO Tax_Id=526226 SubName: Full=tRNA
           pseudouridine synthase B;[Gordonia bronchialis DSM
           43247]
          Length = 299

 Score =  306 bits (785), Expect = 2e-81
 Identities = 158/291 (54%), Positives = 208/291 (71%), Gaps = 5/291 (1%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           G++++DK +G+TSHDVV+RCR+IF TRRVGHAGTLDPMATGVLV+G++RATK+LGLL+  
Sbjct: 10  GLLIVDKQAGITSHDVVSRCRKIFNTRRVGHAGTLDPMATGVLVIGIERATKLLGLLSLT 69

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
           +K Y ATIRLG  T+T+D EGE++    A  VTDE I + +  L GDI+QVP+ VSAIKV
Sbjct: 70  TKSYEATIRLGAATTTDDLEGEIIASADASAVTDEQIHSVVAGLTGDIEQVPAKVSAIKV 129

Query: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192
           DGRRA+ LVR G   +L ARPV + RF+V+  R          +DLDV V+CS+GTYIR+
Sbjct: 130 DGRRAHALVRTGAEFDLAARPVTVRRFDVVDTRRD-----GHFVDLDVVVDCSAGTYIRS 184

Query: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRDL 252
           LARDLG   GVGGHLT+LRRT VG F L+ A +L+++ E P +S  +DE   + FP RD+
Sbjct: 185 LARDLGAELGVGGHLTALRRTAVGPFTLEHALTLDEVRERPHVSLDIDEAVKISFPHRDI 244

Query: 253 TVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
              E E+ S GR +   G+ GIY   D   R IAL++++G R  SV+V+ P
Sbjct: 245 DDDEAESISQGRWLDPIGMKGIYMVVDPAQRAIALVQEKGRRASSVMVVRP 295


>tr|A4FM27|A4FM27_SACEN Tax_Id=405948 SubName: Full=Putative
           uncharacterized protein;[Saccharopolyspora erythraea]
          Length = 536

 Score =  302 bits (773), Expect = 4e-80
 Identities = 158/279 (56%), Positives = 199/279 (71%), Gaps = 5/279 (1%)

Query: 16  VIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGASKE 75
           ++DKP+GMTSHDVVAR RRI  TR+VGHAGTLDPMATGVLVLG++RATK+LG LA  +K 
Sbjct: 1   MVDKPAGMTSHDVVARVRRIMGTRKVGHAGTLDPMATGVLVLGLERATKLLGHLAMDTKA 60

Query: 76  YVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKVDGR 135
           Y+ATIRLG  T+T+DAEGE+L    A  V ++A+   +  L G+++QVPS+VSA+KV+GR
Sbjct: 61  YLATIRLGAATTTDDAEGEVLSEADASEVAEDAVRAGVAELTGELQQVPSSVSAVKVNGR 120

Query: 136 RAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRALAR 195
           RAY + R G  VEL ARPV + RF+VLA+R           +LDV VECSSGTY+RALAR
Sbjct: 121 RAYEIARSGEQVELAARPVTVSRFDVLALRRAEA-----ATELDVLVECSSGTYVRALAR 175

Query: 196 DLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRDLTVS 255
           DLG   GVGGHL +LRRTRVG F L  A +L+ L E P LS  LD      F R D+  +
Sbjct: 176 DLGAGLGVGGHLAALRRTRVGPFGLATARTLDALEEEPGLSMDLDRAVEAAFRRTDVDTA 235

Query: 256 EVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPR 294
              A ++G+ + +AG+ G Y   D DGR IAL+RD+GPR
Sbjct: 236 AARALAHGQAVPAAGLKGTYGVFDPDGRAIALVRDQGPR 274


>tr|C2BNY8|C2BNY8_9CORY Tax_Id=525264 (truB)SubName: Full=tRNA
           pseudouridine synthase B;[Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 297

 Score =  301 bits (771), Expect = 7e-80
 Identities = 162/298 (54%), Positives = 206/298 (69%), Gaps = 5/298 (1%)

Query: 6   TGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKI 65
           T A    G+V++DKP+GMTSHDVV R RR F T++VGHAGTLDPMATGVLVLGV+R TK 
Sbjct: 2   TDALANSGLVIVDKPAGMTSHDVVGRLRRYFHTKKVGHAGTLDPMATGVLVLGVERGTKF 61

Query: 66  LGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPS 125
           L  +  ++K Y ATIRLG  T+T+DAEGE     SA  +   AI   I +L GDI Q P+
Sbjct: 62  LAHMVASTKSYDATIRLGAATTTDDAEGEYSWGASAADIDRTAIEAEIAKLTGDIMQKPA 121

Query: 126 AVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECS 185
           AVSAIK++GRRA+ LVREG  V++ ARPV +D+F+VLA R        D IDLDV V+CS
Sbjct: 122 AVSAIKINGRRAHELVREGQEVDIPARPVTVDKFDVLAERRE-----GDYIDLDVTVDCS 176

Query: 186 SGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLL 245
           SGTYIR+LARDLG+A  VGGHLT+LRRT VG F L  A SL+ LAE PRLS +LDE    
Sbjct: 177 SGTYIRSLARDLGEALQVGGHLTALRRTEVGPFALADALSLDALAESPRLSLSLDEALAR 236

Query: 246 MFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
            FP   +T  E  A + G+ +   G+ G++AA   +G+ +AL++++G R  +V V  P
Sbjct: 237 CFPVLSVTEEEAAALAMGKWLEPRGLKGVHAAVAPNGQAVALIKEKGKRLATVFVARP 294


>sp|C3PH13|TRUB_CORA7 Tax_Id=548476 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Corynebacterium
           aurimucosum]
          Length = 297

 Score =  299 bits (766), Expect = 3e-79
 Identities = 162/291 (55%), Positives = 199/291 (68%), Gaps = 5/291 (1%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           G+VV+DKP+GMTSHDVV + RR F TR+VGHAGTLDPMATGVLV+G++R TK L  +  +
Sbjct: 9   GLVVVDKPAGMTSHDVVGKLRRFFRTRKVGHAGTLDPMATGVLVVGIERGTKFLAHMVAS 68

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
           +K Y ATIRLG  T T+DAEGE      A  V D AIA  I  L GDI Q P+AVSAIKV
Sbjct: 69  TKAYDATIRLGTATHTDDAEGEATWGEPATAVEDSAIAREIAALTGDIMQRPAAVSAIKV 128

Query: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192
           DG+RA+  VR G  VEL ARPV + RF++LA R   E      IDLDV V CSSGTYIR+
Sbjct: 129 DGKRAHERVRAGEEVELPARPVTVSRFDILATRREGE-----FIDLDVSVACSSGTYIRS 183

Query: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRDL 252
           LARDLG+A GVGGHLT+LRRT VG F LD A  L+ L + P LS +LDE     +P  ++
Sbjct: 184 LARDLGEALGVGGHLTALRRTEVGPFRLDDAHPLDALEDSPELSLSLDEALARSYPVLEV 243

Query: 253 TVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           T  E +A + G+ +   G+ G YAA D  GR IAL++++G R  +V V  P
Sbjct: 244 TDEEAQALAMGKWLEPRGLKGTYAAVDPQGRSIALIQEKGKRLATVFVARP 294


>tr|C6RAH4|C6RAH4_9CORY Tax_Id=553206 (truB)SubName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-;[Corynebacterium
           tuberculostearicum SK141]
          Length = 297

 Score =  299 bits (766), Expect = 3e-79
 Identities = 160/298 (53%), Positives = 207/298 (69%), Gaps = 5/298 (1%)

Query: 6   TGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKI 65
           T A    G+V++DKP+GMTSHDVV R RR F T++VGHAGTLDPMATGVLVLG++R TK 
Sbjct: 2   TDALANSGLVIVDKPAGMTSHDVVGRLRRCFHTKKVGHAGTLDPMATGVLVLGMERGTKF 61

Query: 66  LGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPS 125
           L  +  ++K Y ATIRLG  T+T+DAEGE     SA  +   AI   I +L GDI Q P+
Sbjct: 62  LAHMVASTKSYDATIRLGAATTTDDAEGEYSWGASAAAIDRAAIEAEIAKLTGDIMQKPA 121

Query: 126 AVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECS 185
           AVSAIK++GRRA+ LVREG  V++ ARPV +D+F+VLA R        D IDLDV V+CS
Sbjct: 122 AVSAIKINGRRAHELVREGQEVDIPARPVTVDKFDVLAERRE-----GDYIDLDVTVDCS 176

Query: 186 SGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLL 245
           SGTYIR+LARDLG+A  VGGHLT+LRRT+VG F L  A SL+ LA+ PRLS +LDE    
Sbjct: 177 SGTYIRSLARDLGEALKVGGHLTALRRTKVGPFALADALSLDALADSPRLSLSLDEALAR 236

Query: 246 MFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
            FP   +T  E  A + G+ +   G+ G++AA   +G+ +AL++++G R  +V V  P
Sbjct: 237 CFPVLSVTEEEAAALAMGKWLEPRGLKGVHAAVAPNGQAVALIKEKGKRLATVFVARP 294


>tr|C0XSF2|C0XSF2_9CORY Tax_Id=525263 (truB)SubName: Full=tRNA
           pseudouridine synthase B;[Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 300

 Score =  298 bits (762), Expect = 7e-79
 Identities = 158/291 (54%), Positives = 197/291 (67%), Gaps = 5/291 (1%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           GIVV+DKP+GMTSHDVV R RR F TR+VGHAGTLDPMATGVLV G++R TK+L  L   
Sbjct: 12  GIVVVDKPAGMTSHDVVTRLRRFFRTRKVGHAGTLDPMATGVLVAGIERGTKLLAHLVAE 71

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
            K Y ATIRLG TT+T+DA+G+++ C  A  + D  IA  I  L G+I QVPS+VSAIK+
Sbjct: 72  DKVYAATIRLGATTTTDDADGDVVMCADASQIGDADIAAGIAELTGEIMQVPSSVSAIKI 131

Query: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192
            GRRA+ LVR G  V++  R V + RF  LAVR       A VID+DV V CS GTYIR+
Sbjct: 132 GGRRAHELVRSGETVDIPPREVTVFRFHALAVRRH-----ASVIDVDVRVHCSKGTYIRS 186

Query: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRDL 252
           LARDLG A GVGGHLT+LRR  VG F LD A SL  L   P LS +LDE     +P  D+
Sbjct: 187 LARDLGAALGVGGHLTALRREAVGAFTLDDARSLTQLETAPTLSLSLDEALSRAWPVIDV 246

Query: 253 TVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           T +E EA + G+ +   G+  ++AA   DGR +AL++++G R  +V V  P
Sbjct: 247 TAAEYEALAMGKWLEPRGVRVVHAAVGPDGRAVALVKEQGKRLSTVFVARP 297


>sp|P60343|TRUB_CORDI Tax_Id=1717 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Corynebacterium
           diphtheriae]
          Length = 300

 Score =  292 bits (748), Expect = 3e-77
 Identities = 151/294 (51%), Positives = 205/294 (69%), Gaps = 8/294 (2%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           G+V++DKP GMTSHDVV++ RR F T++VGHAGTLDPMATGVLVLG++R TK L  +  +
Sbjct: 9   GLVIVDKPQGMTSHDVVSKIRRTFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVAS 68

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARH---VTDEAIATAIGRLRGDIKQVPSAVSA 129
           +K Y ATIRLG  T+T+D EGE +   S      +T+  I+ A+ + RG I Q P+AVSA
Sbjct: 69  TKSYTATIRLGAATTTDDREGETITSASPDQLAGITETKISDAVKQFRGSIMQRPAAVSA 128

Query: 130 IKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTY 189
           IK+DG+RA++ VREG  VE+ ARPV I R+++L +R       A  ID+DVEV+CSSGTY
Sbjct: 129 IKIDGKRAHQRVREGEKVEIPARPVTISRYDILEIRRD-----AAFIDIDVEVDCSSGTY 183

Query: 190 IRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPR 249
           IR+LARDLG+  GVGGHLT+LRRT+VG F LD A +LE L E P +S TLD+     +P 
Sbjct: 184 IRSLARDLGEELGVGGHLTALRRTQVGPFTLDNAVTLEKLEENPHVSLTLDQALAASYPV 243

Query: 250 RDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
             ++  E    + G+ ++  G+ GI+AA D  GR IAL++++G R  ++ V  P
Sbjct: 244 LSVSEKEASDLAMGKWLTPRGLKGIHAAVDPHGRAIALVKEQGKRLATIFVARP 297


>tr|C2CNX5|C2CNX5_CORST Tax_Id=525268 (truB)SubName: Full=tRNA
           pseudouridine synthase B;[Corynebacterium striatum ATCC
           6940]
          Length = 310

 Score =  292 bits (748), Expect = 3e-77
 Identities = 157/301 (52%), Positives = 201/301 (66%), Gaps = 5/301 (1%)

Query: 3   ESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRA 62
           +  T A    G+VV+DKP GMTSHDVV R RRIF TR+VGHAGTLDPMATGVLV+G++R 
Sbjct: 12  QGMTDALANSGLVVVDKPQGMTSHDVVGRLRRIFHTRKVGHAGTLDPMATGVLVVGLERG 71

Query: 63  TKILGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQ 122
           TK L  +  ++K Y ATIRLG  T T+DAEGE      A  +  E +   +  L GDI Q
Sbjct: 72  TKFLAHMVASTKSYAATIRLGMATHTDDAEGERTWGEPASELDMEQVNKEVAALTGDIMQ 131

Query: 123 VPSAVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEV 182
            P+AVSAIK+DG+RA+  VREG  VE+ ARPV + RF++LA R          +DLDV V
Sbjct: 132 RPAAVSAIKIDGKRAHERVREGEEVEIPARPVTVSRFDILAHRIE-----GKYLDLDVTV 186

Query: 183 ECSSGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDET 242
           +CSSGTYIR+LARDLG+A GVGGHLT+L RT VG F L  A +L++LA+ P LS +LDE 
Sbjct: 187 DCSSGTYIRSLARDLGEALGVGGHLTALCRTEVGPFTLGDARTLDELADAPALSLSLDEA 246

Query: 243 CLLMFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLH 302
               +P   +T  E +A + G+ +   G+ G YAA D DG  IAL++++G R  +V V  
Sbjct: 247 LARSYPVLQVTEDEAKALAMGKWLEPRGLKGTYAAVDPDGHSIALIKEKGKRLATVFVAR 306

Query: 303 P 303
           P
Sbjct: 307 P 307


>tr|A8M755|A8M755_SALAI Tax_Id=391037 SubName: Full=tRNA
           pseudouridine synthase B;[Salinispora arenicola]
          Length = 305

 Score =  290 bits (742), Expect = 2e-76
 Identities = 156/293 (53%), Positives = 200/293 (68%), Gaps = 6/293 (2%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           G++V+DKP GMTSHDVVAR RR+  TRRVGH GTLDPMATGVLV+GV RAT++L  + GA
Sbjct: 16  GLIVVDKPGGMTSHDVVARVRRLARTRRVGHGGTLDPMATGVLVVGVGRATRLLTYVIGA 75

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
            K Y ATIRLGQ T T+DAEG+++    A  VT++A+  A+    GD+ QVPSAVSAIK+
Sbjct: 76  GKSYTATIRLGQATVTDDAEGDVIASTPAGRVTEDAVRAALAAQTGDVDQVPSAVSAIKI 135

Query: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192
           DG+RAYR VREG  V+L AR V I R EV A+R        DV+D+DV+V CSSGTY+RA
Sbjct: 136 DGQRAYRRVREGKDVDLPARRVTISRLEVRALRRDE----PDVVDVDVDVTCSSGTYVRA 191

Query: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPR--LSRTLDETCLLMFPRR 250
           +ARD G A GVGGHLT+LRRT VG F L +A +L+DL       ++ +L       FPRR
Sbjct: 192 VARDAGLALGVGGHLTALRRTAVGGFTLAEAATLDDLERRAPEVVTLSLPAAADRSFPRR 251

Query: 251 DLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           + T  E    S+G P+   GIDG YA     G ++A++ +   R ++ +VL P
Sbjct: 252 EATAEEERVLSHGGPLDPVGIDGPYAVFGPAGGLVAIVSERAGRARAEIVLAP 304


>tr|C8NU03|C8NU03_9CORY Tax_Id=585529 (truB)SubName: Full=tRNA
           pseudouridine synthase B; EC=4.2.1.70;[Corynebacterium
           genitalium ATCC 33030]
          Length = 306

 Score =  290 bits (741), Expect = 2e-76
 Identities = 151/291 (51%), Positives = 198/291 (68%), Gaps = 5/291 (1%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           GIVV+DKP+GMTSHDVVA+ RR F TR+VGHAGTLDPMATGVLV G++R TK+L  L   
Sbjct: 18  GIVVVDKPAGMTSHDVVAQLRRFFGTRKVGHAGTLDPMATGVLVAGIERGTKLLAHLVAD 77

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
            K Y  TIRLG +T+T+DAEG++L    A  +TDE I   +  L G+I QVPS VSAIK+
Sbjct: 78  DKVYATTIRLGASTTTDDAEGDVLAETDASTLTDEQIMEQVTALTGEIMQVPSKVSAIKI 137

Query: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192
           DG+RA+ LVREG  V + ARPV +  F+V  +R          +D+D  V CSSGTYIR+
Sbjct: 138 DGKRAHELVREGKEVNIPARPVTVFSFDVAGIRRE-----GSFVDVDARVHCSSGTYIRS 192

Query: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRDL 252
           LARD+G+  GVGGHLT+LRR  VG F L+ A +LE L + P LS +LDE     +P  ++
Sbjct: 193 LARDMGETLGVGGHLTALRREAVGPFTLEHARTLERLEDSPALSLSLDEALTAAWPVLNV 252

Query: 253 TVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           T  E  A + G+ +   G+DG++AA   DGR +AL+R++G R  ++ V  P
Sbjct: 253 TADEFAALAMGKWLEPRGLDGVHAAVGPDGRAVALVREKGKRLSTLFVARP 303


>sp|Q8FPB3|TRUB_COREF Tax_Id=152794 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Corynebacterium
           efficiens]
          Length = 297

 Score =  288 bits (737), Expect = 6e-76
 Identities = 154/291 (52%), Positives = 203/291 (69%), Gaps = 5/291 (1%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           G+VV+DKP+GMTSHDVV++ RR F TR+VGHAGTLDPMATGVLV+G++R T+ L  L   
Sbjct: 9   GLVVVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLAHLVAT 68

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
           +K Y ATIRLG +T+T+D EG+++    A  + DE I TA+  L G+I Q P++VSAIK+
Sbjct: 69  TKAYDATIRLGASTTTDDREGDVVFSADASTLDDEQITTAVTSLTGEIMQKPASVSAIKI 128

Query: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192
           DG+RA+  VR+G VV++ ARPV +  F+VL  R   E G    +DLDV V CSSGTYIR+
Sbjct: 129 DGKRAHERVRDGEVVDIPARPVTVSVFDVLEQR--REGGF---VDLDVRVHCSSGTYIRS 183

Query: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRDL 252
           LARDLG A GVGGHLT+LRRT VG F L+ A  L DL +  RLS +LDE     +P  ++
Sbjct: 184 LARDLGAALGVGGHLTALRRTEVGPFTLEDAIPLADLQDNARLSLSLDEALARSYPVLEI 243

Query: 253 TVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           T +E EA S G+ +   G+ G++AA    GR IAL+ ++G R  +V V  P
Sbjct: 244 TEAEGEALSMGKWLEPRGLKGVHAAVTPSGRSIALVEEKGKRLATVFVARP 294


>tr|C8NPI1|C8NPI1_COREF Tax_Id=196164 (truB)SubName: Full=tRNA
           pseudouridine synthase B; EC=4.2.1.70;[Corynebacterium
           efficiens YS-314]
          Length = 297

 Score =  288 bits (737), Expect = 6e-76
 Identities = 154/291 (52%), Positives = 203/291 (69%), Gaps = 5/291 (1%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           G+VV+DKP+GMTSHDVV++ RR F TR+VGHAGTLDPMATGVLV+G++R T+ L  L   
Sbjct: 9   GLVVVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLAHLVAT 68

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
           +K Y ATIRLG +T+T+D EG+++    A  + DE I TA+  L G+I Q P++VSAIK+
Sbjct: 69  TKAYDATIRLGASTTTDDREGDVVFSADASTLDDEQITTAVTSLTGEIMQKPASVSAIKI 128

Query: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192
           DG+RA+  VR+G VV++ ARPV +  F+VL  R   E G    +DLDV V CSSGTYIR+
Sbjct: 129 DGKRAHERVRDGEVVDIPARPVTVSVFDVLEQR--REGGF---VDLDVRVHCSSGTYIRS 183

Query: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRDL 252
           LARDLG A GVGGHLT+LRRT VG F L+ A  L DL +  RLS +LDE     +P  ++
Sbjct: 184 LARDLGAALGVGGHLTALRRTEVGPFTLEDAIPLADLQDNARLSLSLDEALARSYPVLEI 243

Query: 253 TVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           T +E EA S G+ +   G+ G++AA    GR IAL+ ++G R  +V V  P
Sbjct: 244 TEAEGEALSMGKWLEPRGLKGVHAAVTPSGRSIALVEEKGKRLATVFVARP 294


>tr|C4RD76|C4RD76_9ACTO Tax_Id=219305 SubName: Full=tRNA
           pseudouridine synthase B;[Micromonospora sp. ATCC 39149]
          Length = 300

 Score =  288 bits (737), Expect = 6e-76
 Identities = 157/296 (53%), Positives = 200/296 (67%), Gaps = 12/296 (4%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           G++V+DKP GMTSHDVVAR RR+  TRRVGH GTLDPMATGVLV+GV RAT++L  + GA
Sbjct: 11  GLIVVDKPGGMTSHDVVARIRRLARTRRVGHGGTLDPMATGVLVIGVGRATRLLTYVIGA 70

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
            K Y AT+R GQ T T+DAEG+++    A  V DEAI +A     G+I QVPSAVSAIK+
Sbjct: 71  GKSYTATVRFGQATVTDDAEGDVISATPADAVADEAIRSAFAAFAGEIDQVPSAVSAIKI 130

Query: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVR---PGPEVGLADVIDLDVEVECSSGTY 189
           +G RAY+ VREG  V+L AR V I R +VLAVR   PG       ++D+D++V CSSGTY
Sbjct: 131 NGERAYKRVREGESVDLPARRVTISRLDVLAVRRETPG-------LVDVDIDVTCSSGTY 183

Query: 190 IRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPR--LSRTLDETCLLMF 247
           IRALARD G A  VGGHLT+LRRT VG F L +A +L++L       ++  LD      F
Sbjct: 184 IRALARDAGLALSVGGHLTALRRTAVGGFALGEAATLDELERRAPEVVNLPLDVAADRFF 243

Query: 248 PRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           PRR+ T  E +  S+G P+  AGI G YA    DG +IA++ +   R ++ +VL P
Sbjct: 244 PRREATADEAKVLSHGGPLDPAGIAGPYAVFGPDGALIAIVSERDGRARAEIVLAP 299


>tr|C0WKN3|C0WKN3_9CORY Tax_Id=525260 (truB)SubName: Full=tRNA
           pseudouridine synthase B;[Corynebacterium accolens ATCC
           49725]
          Length = 297

 Score =  288 bits (737), Expect = 6e-76
 Identities = 153/291 (52%), Positives = 200/291 (68%), Gaps = 5/291 (1%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           G+V++DKP+GMTSHDVV+R RR F T++VGHAGTLDPMATGVLVLG++R TK L  +  +
Sbjct: 9   GLVIVDKPAGMTSHDVVSRLRRYFHTKKVGHAGTLDPMATGVLVLGIERGTKFLAHMVAS 68

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
           +K Y ATIRLG +T+T+DAEGE      A  +   AI   +  L GDI Q P+AVSAIK+
Sbjct: 69  TKSYSATIRLGASTTTDDAEGEFRWGKPAAALHRSAIEAEVAALTGDIMQKPAAVSAIKI 128

Query: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192
            G+RA+ LVREG  V++ ARPV I  F++  +R        D +DLDV VECSSGTYIR+
Sbjct: 129 KGKRAHELVREGKEVDIPARPVTIHSFDIHDLRTE-----GDFVDLDVSVECSSGTYIRS 183

Query: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRDL 252
           LARD+G+A GVGGHLT+LRRT VG F L  A  L+DLAE P LS +LDE     FP   +
Sbjct: 184 LARDMGEALGVGGHLTALRRTTVGPFALADAHMLDDLAENPSLSLSLDEALKRSFPVLPV 243

Query: 253 TVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           T  E  A + G+ +   G+ G++AA   +G+ IAL++++G R  +V V  P
Sbjct: 244 TEDEAAALAMGKWLEPRGLSGVHAAVAPNGQAIALIKEKGKRLATVFVARP 294


>sp|A0JUU8|TRUB_ARTS2 Tax_Id=290399 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Arthrobacter sp.]
          Length = 306

 Score =  286 bits (733), Expect = 2e-75
 Identities = 162/300 (54%), Positives = 204/300 (68%), Gaps = 13/300 (4%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           G+V++DKP G TSHDVV R RR+  TR+VGHAGTLDPMATGVLVLG+++AT++L  + G 
Sbjct: 4   GLVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIVGT 63

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
           SK Y ATIRLG++T T+DAEGE++   SA  VT+ AI  A+  L G+I+QVPS+VSAIKV
Sbjct: 64  SKTYTATIRLGESTVTDDAEGEVVSSHSAAAVTEGAIRAAVAALTGEIQQVPSSVSAIKV 123

Query: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192
           +G RAY  VR G  V+L ARPV I RF+V AVRP        V+D+DV VECSSGTYIRA
Sbjct: 124 NGERAYARVRSGEDVKLAARPVTIHRFDVHAVRP---ERAGAVLDVDVTVECSSGTYIRA 180

Query: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRDL 252
           LARDLG+A G GGHLT+LRRT+VG + LDQA +LE LAE   +   + +    + P R+L
Sbjct: 181 LARDLGEALGTGGHLTALRRTQVGPYTLDQARTLEQLAEELEVLE-MSQAARALMPNREL 239

Query: 253 TVSEVEATSNGRPIS---------SAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           +  E    S GR I+         +A  D   AA   DG ++ALL D G   K V+V  P
Sbjct: 240 SEDEATEISFGRRIAAGAGAGTPEAATADNPAAAFAPDGSLVALLADAGGYAKPVLVFAP 299


>sp|A1R520|TRUB_ARTAT Tax_Id=290340 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Arthrobacter
           aurescens]
          Length = 311

 Score =  286 bits (731), Expect = 3e-75
 Identities = 159/301 (52%), Positives = 208/301 (69%), Gaps = 15/301 (4%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           G+V++DKP G TSHDVV R RR+  TR+VGHAGTLDPMATGVLVLG+++AT++L  + G 
Sbjct: 4   GLVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIVGT 63

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
           SK Y ATIRLG+TT T+DAEGE+ +  +A H+TD+A+A  +  L G I+QVPS+VSAIKV
Sbjct: 64  SKTYTATIRLGETTITDDAEGEVTEARTAAHITDDAVAVGVAALTGPIQQVPSSVSAIKV 123

Query: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192
           +G R+Y  VR G  V+L ARPV I RF+V ++     +    V+D+DV VECSSGTYIRA
Sbjct: 124 NGERSYARVRSGEEVKLAARPVTIHRFDVHSI---TRIDGGRVVDVDVTVECSSGTYIRA 180

Query: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLA-ELPRLSRTLDETCLLMFPRRD 251
           LARDLG+A G+GGHLT+LRRT+VG + LDQA +LE+LA EL  L  +L    L+  P R+
Sbjct: 181 LARDLGNALGIGGHLTALRRTQVGPYSLDQARTLEELAEELEVLEMSLAARSLM--PNRE 238

Query: 252 LTVSEVEATSNGRPISSAGIDGIYAASDAD---------GRVIALLRDEGPRTKSVVVLH 302
           L+  E    S GR I++    G   A+ A+         G ++ALL D G   K V+V  
Sbjct: 239 LSEQETTEISFGRRIAAGPGAGTPDAATAEKPAAAFAPSGELVALLADTGSFAKPVLVFA 298

Query: 303 P 303
           P
Sbjct: 299 P 299


>sp|A4QEY6|TRUB_CORGB Tax_Id=340322 (truB)RecName: Full=tRNA
           pseudouridine synthase B; EC=5.4.99.-; AltName:
           Full=tRNA pseudouridine 55 synthase; Short=Psi55
           synthase; AltName: Full=tRNA-uridine isomerase; AltName:
           Full=tRNA pseudouridylate synthase;[Corynebacterium
           glutamicum]
          Length = 297

 Score =  285 bits (730), Expect = 4e-75
 Identities = 150/292 (51%), Positives = 194/292 (66%), Gaps = 5/292 (1%)

Query: 12  PGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAG 71
           PG+V++DKP+GMTSHDVV++ RR F TR+VGHAGTLDPMATGVLV+G++R T+ L  +  
Sbjct: 8   PGLVIVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLAHMVA 67

Query: 72  ASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIK 131
           ++K Y ATIRLG  TST+DAEGE++    A  +   AI   I  L GDI Q P+ VSAIK
Sbjct: 68  STKAYDATIRLGAATSTDDAEGEVISTTDASGLDHRAILAEIANLTGDIMQKPTKVSAIK 127

Query: 132 VDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIR 191
           +DG+RA+  VR+G  V++ ARPV +  F+VL  R   E       DLDV V CSSGTYIR
Sbjct: 128 IDGKRAHERVRDGEEVDIPARPVTVSVFDVLDYRVDSE-----FYDLDVRVHCSSGTYIR 182

Query: 192 ALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRD 251
           ALARDLG+A  VGGHLT+LRRT VG F L+ A  L  L E P LS  LD+     +P  D
Sbjct: 183 ALARDLGNALQVGGHLTALRRTEVGPFTLNDATPLSKLQENPELSLNLDQALTRSYPVLD 242

Query: 252 LTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           +T  E    S G+ +   G+ G++AA    G+ +AL+ ++G R  +V V HP
Sbjct: 243 ITEDEGVDLSMGKWLEPRGLKGVHAAVTPSGKAVALIEEKGKRLATVFVAHP 294


>tr|B8HG60|B8HG60_ARTCA Tax_Id=452863 SubName: Full=tRNA
           pseudouridine synthase B;[Arthrobacter chlorophenolicus]
          Length = 322

 Score =  285 bits (728), Expect = 7e-75
 Identities = 162/305 (53%), Positives = 205/305 (67%), Gaps = 15/305 (4%)

Query: 9   GLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGL 68
           G+  G+V++DKP G TSHDVV R RRI  TR+VGHAGTLDPMATGVLV+G+++AT++L  
Sbjct: 11  GVLSGLVIVDKPQGWTSHDVVGRMRRIAGTRKVGHAGTLDPMATGVLVVGINKATRLLTY 70

Query: 69  LAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVS 128
           + G SK Y ATIRLGQ+T T+DAEG+++       V ++AI   +  L G I+QVPS+VS
Sbjct: 71  IVGTSKTYTATIRLGQSTVTDDAEGDVIASAGTSAVAEQAIHDGVAALTGGIEQVPSSVS 130

Query: 129 AIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGT 188
           AIKV+G RAY  VR G  V+L ARPV I RFEV A+R   + G ADVID+DV VECSSGT
Sbjct: 131 AIKVNGERAYARVRSGEDVKLAARPVTIHRFEVHAIR--RDAG-ADVIDIDVTVECSSGT 187

Query: 189 YIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLA-ELPRLSRTLDETCLLMF 247
           YIRALARDLG+  GVGGHLT+LRRT VG + L+QA +LE LA EL  L   + +    + 
Sbjct: 188 YIRALARDLGNGLGVGGHLTALRRTHVGPYSLEQARTLEQLAEELDVLE--MSQAARALM 245

Query: 248 PRRDLTVSEVEATSNGRPISSAGIDGIYAASDA---------DGRVIALLRDEGPRTKSV 298
           P R+L+  E    S GR I++    G   A+ A         DG ++ALL D G   K V
Sbjct: 246 PNRELSAEETTEISYGRRIAAGAAPGSPGAATADHPAAAFAPDGSLVALLADSGNYAKPV 305

Query: 299 VVLHP 303
           +V  P
Sbjct: 306 LVFAP 310


>tr|A4X4P5|A4X4P5_SALTO Tax_Id=369723 SubName: Full=tRNA
           pseudouridine synthase B; EC=4.2.1.70;[Salinispora
           tropica]
          Length = 327

 Score =  281 bits (719), Expect = 7e-74
 Identities = 152/293 (51%), Positives = 196/293 (66%), Gaps = 6/293 (2%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           G++V+DKP GMTSHDVVAR RR+  TRRVGH GTLDPMATGVLV+GV RAT++L  + GA
Sbjct: 38  GLIVVDKPGGMTSHDVVARVRRLARTRRVGHGGTLDPMATGVLVVGVGRATRLLTYVIGA 97

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
            K Y ATIRLGQ T T+DAEG+++    A  VT+EA+  A+    G + QVPSAVSAIK+
Sbjct: 98  GKSYTATIRLGQATVTDDAEGDVISSTPAGQVTEEAVRAALAVQTGTVDQVPSAVSAIKI 157

Query: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192
           DG+RAYR VR G  V+L  R V I R ++ A+R        DV+D+DV+V CSSGTY+RA
Sbjct: 158 DGQRAYRRVRAGDSVDLPPRRVTISRLDMRALRHDE----PDVVDVDVDVTCSSGTYVRA 213

Query: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPR--LSRTLDETCLLMFPRR 250
           +ARD G A GVGGHL +LRRT VG F L +A +L DL       ++ +L       FPRR
Sbjct: 214 IARDTGRALGVGGHLIALRRTAVGGFTLGEAATLGDLERRAPEVVTLSLAAAADRFFPRR 273

Query: 251 DLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           + T  E    S+G P+  AGIDG YA     G ++A++ +   R ++ +VL P
Sbjct: 274 EATAEEERVLSHGGPLDPAGIDGPYAVFGPAGGLVAIVSERAGRARAEIVLAP 326


>tr|C0VVH0|C0VVH0_9CORY Tax_Id=548477 (truB)SubName: Full=tRNA
           pseudouridine synthase B;[Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 295

 Score =  280 bits (717), Expect = 1e-73
 Identities = 152/291 (52%), Positives = 194/291 (66%), Gaps = 9/291 (3%)

Query: 13  GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72
           G+V++DKP GMTSH VV   RR F T++VGHAGTLDPMATG+LV+GV+R TK L  L   
Sbjct: 9   GLVLVDKPRGMTSHSVVGAIRRYFGTKKVGHAGTLDPMATGLLVVGVERGTKFLAHLVAE 68

Query: 73  SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
           +K Y ATIRLGQ T+TEDA+GE+ + V A HVTD  IA  + +L GDI Q PS+VSAIK+
Sbjct: 69  TKTYEATIRLGQETTTEDADGEITREVDASHVTDADIAREVEKLTGDIMQRPSSVSAIKI 128

Query: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192
           +G+RA++LVREG  VE+  RPV I  FEV   R G         DL V V CSSGTYIRA
Sbjct: 129 NGKRAHQLVREGEKVEIPPRPVTIHSFEVTG-REG--------TDLRVRVHCSSGTYIRA 179

Query: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRRDL 252
           LARDLG   GVG HL +LRR  VG F++ ++  L    + P LS TLDE     +P   +
Sbjct: 180 LARDLGHGLGVGAHLIALRRLNVGPFDISRSHPLAHFEDHPELSLTLDEALQACYPTLHV 239

Query: 253 TVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303
           T  E +A S G+ +S  G+ G+++A   DGR IAL++++G R  +V V  P
Sbjct: 240 TDDEAQALSEGKWLSPRGLQGVHSAVAPDGRSIALIKEQGKRLSTVFVARP 290


  Database: Amellifera_nr
    Posted date:  Jan 15, 2010  5:10 AM
  Number of letters in database: 3,808,957,724
  Number of sequences in database:  11,153,314
  
Lambda     K      H
   0.319    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11153314
Number of Hits to DB: 2,119,467,471
Number of extensions: 85531257
Number of successful extensions: 232758
Number of sequences better than 10.0: 2397
Number of HSP's gapped: 230659
Number of HSP's successfully gapped: 2569
Length of query: 320
Length of database: 3,808,957,724
Length adjustment: 137
Effective length of query: 183
Effective length of database: 2,280,953,706
Effective search space: 417414528198
Effective search space used: 417414528198
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)