BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ML1558c
         (347 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,153,314 sequences; 3,808,957,724 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

sp|Q9Z5J1|NUSA_MYCLE Tax_Id=1769 (nusA)RecName: Full=Transcripti...   676   0.0  
tr|B8ZRT6|B8ZRT6_MYCLB Tax_Id=561304 (nusA)SubName: Full=Probabl...   676   0.0  
tr|B2HKS0|B2HKS0_MYCMM Tax_Id=216594 (nusA)SubName: Full=N utili...   627   e-178
sp|P0A5M2|NUSA_MYCTU Tax_Id=1773 (nusA)RecName: Full=Transcripti...   623   e-176
sp|P0A5M3|NUSA_MYCBO Tax_Id=1765 (nusA)RecName: Full=Transcripti...   623   e-176
tr|Q73VV2|Q73VV2_MYCPA Tax_Id=1770 (nusA)SubName: Full=NusA;[Myc...   623   e-176
tr|C6DX00|C6DX00_MYCTK Tax_Id=478434 SubName: Full=N utilization...   623   e-176
tr|C1AFV5|C1AFV5_MYCBT Tax_Id=561275 (nusA)SubName: Full=Transcr...   623   e-176
tr|A5U6J3|A5U6J3_MYCTA Tax_Id=419947 (nusA)SubName: Full=Transcr...   623   e-176
tr|A1KMI4|A1KMI4_MYCBP Tax_Id=410289 (nusA)SubName: Full=Probabl...   623   e-176
tr|A5WR94|A5WR94_MYCTF Tax_Id=336982 SubName: Full=N utilization...   623   e-176
tr|A4KKB0|A4KKB0_MYCTU Tax_Id=395095 SubName: Full=N utilization...   623   e-176
tr|A2VLH4|A2VLH4_MYCTU Tax_Id=348776 SubName: Full=N utilization...   623   e-176
tr|A0PQC2|A0PQC2_MYCUA Tax_Id=362242 (nusA)SubName: Full=N utili...   622   e-176
tr|A0QIY4|A0QIY4_MYCA1 Tax_Id=243243 (nusA)SubName: Full=Transcr...   621   e-176
tr|A0QVM4|A0QVM4_MYCS2 Tax_Id=246196 (nusA)SubName: Full=Transcr...   582   e-164
tr|Q1BA96|Q1BA96_MYCSS Tax_Id=164756 SubName: Full=NusA antiterm...   578   e-163
tr|A3PY73|A3PY73_MYCSJ Tax_Id=164757 SubName: Full=NusA antiterm...   578   e-163
tr|A1UER6|A1UER6_MYCSK Tax_Id=189918 SubName: Full=NusA antiterm...   578   e-163
tr|A4TCF2|A4TCF2_MYCGI Tax_Id=350054 SubName: Full=NusA antiterm...   570   e-161
tr|A1T7H6|A1T7H6_MYCVP Tax_Id=350058 SubName: Full=NusA antiterm...   567   e-160
tr|B1MD91|B1MD91_MYCA9 Tax_Id=561007 SubName: Full=Transcription...   541   e-152
tr|C1B311|C1B311_RHOOB Tax_Id=632772 (nusA)SubName: Full=Transcr...   522   e-146
tr|Q0S221|Q0S221_RHOSR Tax_Id=101510 (nusA)SubName: Full=Transcr...   521   e-146
tr|C0ZYA3|C0ZYA3_RHOE4 Tax_Id=234621 (nusA)SubName: Full=Transcr...   516   e-144
tr|C3JM53|C3JM53_RHOER Tax_Id=596309 (nusA)SubName: Full=Transcr...   516   e-144
tr|Q5YSC4|Q5YSC4_NOCFA Tax_Id=37329 (nusA)SubName: Full=Putative...   516   e-144
tr|D0LBI6|D0LBI6_9ACTO Tax_Id=526226 SubName: Full=Transcription...   501   e-140
tr|A4FM35|A4FM35_SACEN Tax_Id=405948 (nusA)SubName: Full=Putativ...   497   e-138
tr|C2ANX8|C2ANX8_TSUPA Tax_Id=521096 SubName: Full=Transcription...   484   e-135
tr|C8XJB6|C8XJB6_NAKMY Tax_Id=479431 SubName: Full=NusA antiterm...   483   e-134
tr|C7MQU9|C7MQU9_SACVD Tax_Id=471857 SubName: Full=Transcription...   481   e-134
tr|C6WDK9|C6WDK9_ACTMD Tax_Id=446462 SubName: Full=NusA antiterm...   477   e-132
tr|C1UIN5|C1UIN5_9ACTO Tax_Id=526225 SubName: Full=Transcription...   437   e-120
tr|A0LV29|A0LV29_ACIC1 Tax_Id=351607 SubName: Full=NusA antiterm...   414   e-114
tr|C4RD67|C4RD67_9ACTO Tax_Id=219305 SubName: Full=Transcription...   414   e-114
tr|A8M744|A8M744_SALAI Tax_Id=391037 SubName: Full=NusA antiterm...   414   e-113
tr|C2AED2|C2AED2_THECU Tax_Id=471852 SubName: Full=Transcription...   414   e-113
tr|A4X4N5|A4X4N5_SALTO Tax_Id=369723 SubName: Full=Transcription...   413   e-113
tr|C4DMD5|C4DMD5_9ACTO Tax_Id=446470 SubName: Full=Transcription...   409   e-112
tr|C1WYL5|C1WYL5_9ACTO Tax_Id=479435 SubName: Full=Transcription...   406   e-111
tr|A1SLK9|A1SLK9_NOCSJ Tax_Id=196162 SubName: Full=Transcription...   401   e-110
tr|C5BWS5|C5BWS5_BEUC1 Tax_Id=471853 SubName: Full=NusA antiterm...   399   e-109
tr|A6W7Z0|A6W7Z0_KINRD Tax_Id=266940 SubName: Full=NusA antiterm...   399   e-109
tr|C8NTZ4|C8NTZ4_9CORY Tax_Id=585529 (nusA)SubName: Full=N utili...   399   e-109
tr|C7QDY5|C7QDY5_CATAD Tax_Id=479433 SubName: Full=NusA antiterm...   394   e-108
tr|Q47RV3|Q47RV3_THEFY Tax_Id=269800 SubName: Full=Transcription...   393   e-107
tr|Q6NGN0|Q6NGN0_CORDI Tax_Id=1717 SubName: Full=Putative N util...   392   e-107
tr|C5VCQ9|C5VCQ9_9CORY Tax_Id=553207 (nusA)SubName: Full=Transcr...   390   e-106
tr|C0E2H0|C0E2H0_9CORY Tax_Id=566549 SubName: Full=Putative unch...   390   e-106

>sp|Q9Z5J1|NUSA_MYCLE Tax_Id=1769 (nusA)RecName: Full=Transcription
           elongation protein nusA;[Mycobacterium leprae]
          Length = 347

 Score =  676 bits (1743), Expect = 0.0
 Identities = 347/347 (100%), Positives = 347/347 (100%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR
Sbjct: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT
Sbjct: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347
           LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347


>tr|B8ZRT6|B8ZRT6_MYCLB Tax_Id=561304 (nusA)SubName: Full=Probable
           transcription termination/antitermination
           factor;[Mycobacterium leprae]
          Length = 347

 Score =  676 bits (1743), Expect = 0.0
 Identities = 347/347 (100%), Positives = 347/347 (100%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR
Sbjct: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT
Sbjct: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347
           LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347


>tr|B2HKS0|B2HKS0_MYCMM Tax_Id=216594 (nusA)SubName: Full=N
           utilization substance protein a NusA;[Mycobacterium
           marinum]
          Length = 347

 Score =  627 bits (1616), Expect = e-178
 Identities = 321/346 (92%), Positives = 334/346 (96%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE+DRGISVNELL+TI+SALLTAYRHTQGHQ DARI+IDRKTGVV+V+AR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E DDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RDSRANARGLVVVRMGSETKASEGVIP+AEQV GESYEHGNRLRCYVVGV+RG+REPLIT
Sbjct: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV S VPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHE 346
           LAIGKEGQNARLAARLTGWRIDIRGDSP  SA   E+ AS G+AH+
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346


>sp|P0A5M2|NUSA_MYCTU Tax_Id=1773 (nusA)RecName: Full=Transcription
           elongation protein nusA;[Mycobacterium tuberculosis]
          Length = 347

 Score =  623 bits (1606), Expect = e-176
 Identities = 319/347 (91%), Positives = 332/347 (95%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE+DRGISVNELL+TI+SALLTAYRHTQGHQ DARI+IDRKTGVV+VIAR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIPAAEQV GESYEHGNRLRCYVVGVTRGAREPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV S V GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347
           LAIGKEGQNARLAARLTGWRIDIRGD+PP   GQ E   S GMAH+R
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347


>sp|P0A5M3|NUSA_MYCBO Tax_Id=1765 (nusA)RecName: Full=Transcription
           elongation protein nusA;[Mycobacterium bovis]
          Length = 347

 Score =  623 bits (1606), Expect = e-176
 Identities = 319/347 (91%), Positives = 332/347 (95%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE+DRGISVNELL+TI+SALLTAYRHTQGHQ DARI+IDRKTGVV+VIAR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIPAAEQV GESYEHGNRLRCYVVGVTRGAREPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV S V GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347
           LAIGKEGQNARLAARLTGWRIDIRGD+PP   GQ E   S GMAH+R
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347


>tr|Q73VV2|Q73VV2_MYCPA Tax_Id=1770 (nusA)SubName:
           Full=NusA;[Mycobacterium paratuberculosis]
          Length = 351

 Score =  623 bits (1606), Expect = e-176
 Identities = 319/351 (90%), Positives = 335/351 (95%), Gaps = 4/351 (1%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE+DRGISVNELL+TI+SALLTAYRHT+GHQ DARI+IDRKTGVVKVIAR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKVIAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D+DGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RDSRANARGLVVVRMG+ETKASEGVIPAAEQV GESYEHGNR+RCYV+GVTRGAREPLIT
Sbjct: 121 RDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNRVRCYVIGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV S +PGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVKSNLPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVS+IDQ ARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSIIDQAARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQS----EQNASHGMAHER 347
           LAIGKEGQNARLAARLTGWRIDIRGDSP  + G S    E  A+HGMAH+R
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPGGAGGHSESRPEHGATHGMAHDR 351


>tr|C6DX00|C6DX00_MYCTK Tax_Id=478434 SubName: Full=N utilization
           substance protein A nusA;[Mycobacterium tuberculosis]
          Length = 347

 Score =  623 bits (1606), Expect = e-176
 Identities = 319/347 (91%), Positives = 332/347 (95%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE+DRGISVNELL+TI+SALLTAYRHTQGHQ DARI+IDRKTGVV+VIAR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIPAAEQV GESYEHGNRLRCYVVGVTRGAREPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV S V GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347
           LAIGKEGQNARLAARLTGWRIDIRGD+PP   GQ E   S GMAH+R
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347


>tr|C1AFV5|C1AFV5_MYCBT Tax_Id=561275 (nusA)SubName:
           Full=Transcription elongation factor;[Mycobacterium
           bovis]
          Length = 347

 Score =  623 bits (1606), Expect = e-176
 Identities = 319/347 (91%), Positives = 332/347 (95%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE+DRGISVNELL+TI+SALLTAYRHTQGHQ DARI+IDRKTGVV+VIAR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIPAAEQV GESYEHGNRLRCYVVGVTRGAREPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV S V GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347
           LAIGKEGQNARLAARLTGWRIDIRGD+PP   GQ E   S GMAH+R
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347


>tr|A5U6J3|A5U6J3_MYCTA Tax_Id=419947 (nusA)SubName:
           Full=Transcription elongation factor NusA;[Mycobacterium
           tuberculosis]
          Length = 347

 Score =  623 bits (1606), Expect = e-176
 Identities = 319/347 (91%), Positives = 332/347 (95%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE+DRGISVNELL+TI+SALLTAYRHTQGHQ DARI+IDRKTGVV+VIAR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIPAAEQV GESYEHGNRLRCYVVGVTRGAREPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV S V GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347
           LAIGKEGQNARLAARLTGWRIDIRGD+PP   GQ E   S GMAH+R
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347


>tr|A1KMI4|A1KMI4_MYCBP Tax_Id=410289 (nusA)SubName: Full=Probable N
           utilization substance protein A nusA;[Mycobacterium
           bovis]
          Length = 347

 Score =  623 bits (1606), Expect = e-176
 Identities = 319/347 (91%), Positives = 332/347 (95%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE+DRGISVNELL+TI+SALLTAYRHTQGHQ DARI+IDRKTGVV+VIAR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIPAAEQV GESYEHGNRLRCYVVGVTRGAREPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV S V GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347
           LAIGKEGQNARLAARLTGWRIDIRGD+PP   GQ E   S GMAH+R
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347


>tr|A5WR94|A5WR94_MYCTF Tax_Id=336982 SubName: Full=N utilization
           substance protein A nusA;[Mycobacterium tuberculosis]
          Length = 347

 Score =  623 bits (1606), Expect = e-176
 Identities = 319/347 (91%), Positives = 332/347 (95%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE+DRGISVNELL+TI+SALLTAYRHTQGHQ DARI+IDRKTGVV+VIAR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIPAAEQV GESYEHGNRLRCYVVGVTRGAREPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV S V GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347
           LAIGKEGQNARLAARLTGWRIDIRGD+PP   GQ E   S GMAH+R
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347


>tr|A4KKB0|A4KKB0_MYCTU Tax_Id=395095 SubName: Full=N utilization
           substance protein A nusA;[Mycobacterium tuberculosis
           str. Haarlem]
          Length = 347

 Score =  623 bits (1606), Expect = e-176
 Identities = 319/347 (91%), Positives = 332/347 (95%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE+DRGISVNELL+TI+SALLTAYRHTQGHQ DARI+IDRKTGVV+VIAR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIPAAEQV GESYEHGNRLRCYVVGVTRGAREPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV S V GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347
           LAIGKEGQNARLAARLTGWRIDIRGD+PP   GQ E   S GMAH+R
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347


>tr|A2VLH4|A2VLH4_MYCTU Tax_Id=348776 SubName: Full=N utilization
           substance protein A nusA;[Mycobacterium tuberculosis C]
          Length = 347

 Score =  623 bits (1606), Expect = e-176
 Identities = 319/347 (91%), Positives = 332/347 (95%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE+DRGISVNELL+TI+SALLTAYRHTQGHQ DARI+IDRKTGVV+VIAR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIPAAEQV GESYEHGNRLRCYVVGVTRGAREPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV S V GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347
           LAIGKEGQNARLAARLTGWRIDIRGD+PP   GQ E   S GMAH+R
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347


>tr|A0PQC2|A0PQC2_MYCUA Tax_Id=362242 (nusA)SubName: Full=N
           utilization substance protein a NusA;[Mycobacterium
           ulcerans]
          Length = 347

 Score =  622 bits (1604), Expect = e-176
 Identities = 319/346 (92%), Positives = 332/346 (95%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE+DRGISVNELL+TI+SALLTAYRHTQGHQ DARI+IDRKTGVV+V+AR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E DDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RDSRANARGLVVVRMGSETKASEGVIP+AEQV GESYEHGNRLRCYVVGV+RG+REPLIT
Sbjct: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV S VPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDP RFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPGRFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHE 346
           LAIGKEGQNARLAARLTGW IDIRGDSP  SA   E+ AS G+AH+
Sbjct: 301 LAIGKEGQNARLAARLTGWWIDIRGDSPEQSAEHPERGASRGLAHD 346


>tr|A0QIY4|A0QIY4_MYCA1 Tax_Id=243243 (nusA)SubName:
           Full=Transcription termination factor
           NusA;[Mycobacterium avium]
          Length = 351

 Score =  621 bits (1602), Expect = e-176
 Identities = 318/351 (90%), Positives = 334/351 (95%), Gaps = 4/351 (1%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE+DRGISVNELL+TI+SALLTAYRHT+GHQ DARI+IDRKTGVVKVIAR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKVIAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D+DGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RDSRANARGLVVVRMG+ETKASEGVIPAAEQV GESYEHGNR+RCYV+GVTRGAREPLIT
Sbjct: 121 RDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNRVRCYVIGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV S +PGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVKSNLPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVS+IDQ ARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSIIDQAARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQS----EQNASHGMAHER 347
           LAIGKEGQNARLAARLTGWRIDIRGDSP  + G S    E  A+HGM H+R
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPGGAGGHSESRPEHGATHGMVHDR 351


>tr|A0QVM4|A0QVM4_MYCS2 Tax_Id=246196 (nusA)SubName:
           Full=Transcription termination factor
           NusA;[Mycobacterium smegmatis]
          Length = 343

 Score =  582 bits (1499), Expect = e-164
 Identities = 296/346 (85%), Positives = 320/346 (92%), Gaps = 4/346 (1%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE D+GISV+ +++TI+SALLTAYRHT GH+ DARIDIDRKTGVVKVIAR
Sbjct: 1   MNIDMAALHAIEADKGISVDVVVETIKSALLTAYRHTDGHEPDARIDIDRKTGVVKVIAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           + D DGNV++EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGEF+  EG+IVAGVIQ
Sbjct: 61  QTDADGNVLAEWDDTPEGFGRIAATTARQVILQRLRDAENEKVYGEFAAHEGDIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RD+RANARGLVVVRMGSETK SEGVIPAAEQV GE YEHG+R+RCYVVGVTRGAREPLIT
Sbjct: 121 RDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDRVRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAVASRVPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVID+  RAARV+VPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDEAGRAARVIVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHE 346
           LAIGKEGQNARLAARLTGWRIDIR D+ P      + +A HG AH+
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDAAPV----GDADARHGAAHD 342


>tr|Q1BA96|Q1BA96_MYCSS Tax_Id=164756 SubName: Full=NusA
           antitermination factor;[Mycobacterium sp.]
          Length = 347

 Score =  578 bits (1489), Expect = e-163
 Identities = 294/347 (84%), Positives = 317/347 (91%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE D+GISV+ ++DTI+SALLTAYRHT+GHQ DARIDIDRK+G VKV+AR
Sbjct: 1   MNIDMAALHAIEADKGISVDVVVDTIKSALLTAYRHTEGHQADARIDIDRKSGAVKVMAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D DGN+I EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGEFS REG+IVAGVIQ
Sbjct: 61  ETDADGNLIQEWDDTPEGFGRIAATTARQVILQRLRDAENEKNYGEFSAREGDIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RD+RANARGLVVVRMGSETK +EGVIPAAEQV GE YEHG+RLRCYVVGVTRGAREPLIT
Sbjct: 121 RDARANARGLVVVRMGSETKGNEGVIPAAEQVPGERYEHGDRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEI DGSV+IV+VAREAGHRSKIAVASRVPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEINDGSVDIVAVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVID+  RAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDEQTRAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347
           LAIGKEGQNARLAARLTGWRIDIR D+ P    + + +A      +R
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDAAPPDQHRPDSDAPQSAVRDR 347


>tr|A3PY73|A3PY73_MYCSJ Tax_Id=164757 SubName: Full=NusA
           antitermination factor;[Mycobacterium sp.]
          Length = 347

 Score =  578 bits (1489), Expect = e-163
 Identities = 294/347 (84%), Positives = 317/347 (91%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE D+GISV+ ++DTI+SALLTAYRHT+GHQ DARIDIDRK+G VKV+AR
Sbjct: 1   MNIDMAALHAIEADKGISVDVVVDTIKSALLTAYRHTEGHQADARIDIDRKSGAVKVMAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D DGN+I EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGEFS REG+IVAGVIQ
Sbjct: 61  ETDADGNLIQEWDDTPEGFGRIAATTARQVILQRLRDAENEKNYGEFSAREGDIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RD+RANARGLVVVRMGSETK +EGVIPAAEQV GE YEHG+RLRCYVVGVTRGAREPLIT
Sbjct: 121 RDARANARGLVVVRMGSETKGNEGVIPAAEQVPGERYEHGDRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEI DGSV+IV+VAREAGHRSKIAVASRVPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEINDGSVDIVAVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVID+  RAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDEQTRAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347
           LAIGKEGQNARLAARLTGWRIDIR D+ P    + + +A      +R
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDAAPPDQHRPDSDAPQSAVRDR 347


>tr|A1UER6|A1UER6_MYCSK Tax_Id=189918 SubName: Full=NusA
           antitermination factor;[Mycobacterium sp.]
          Length = 347

 Score =  578 bits (1489), Expect = e-163
 Identities = 294/347 (84%), Positives = 317/347 (91%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE D+GISV+ ++DTI+SALLTAYRHT+GHQ DARIDIDRK+G VKV+AR
Sbjct: 1   MNIDMAALHAIEADKGISVDVVVDTIKSALLTAYRHTEGHQADARIDIDRKSGAVKVMAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D DGN+I EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGEFS REG+IVAGVIQ
Sbjct: 61  ETDADGNLIQEWDDTPEGFGRIAATTARQVILQRLRDAENEKNYGEFSAREGDIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RD+RANARGLVVVRMGSETK +EGVIPAAEQV GE YEHG+RLRCYVVGVTRGAREPLIT
Sbjct: 121 RDARANARGLVVVRMGSETKGNEGVIPAAEQVPGERYEHGDRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEI DGSV+IV+VAREAGHRSKIAVASRVPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEINDGSVDIVAVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVID+  RAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDEQTRAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347
           LAIGKEGQNARLAARLTGWRIDIR D+ P    + + +A      +R
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDAAPPDQHRPDSDAPQSAVRDR 347


>tr|A4TCF2|A4TCF2_MYCGI Tax_Id=350054 SubName: Full=NusA
           antitermination factor;[Mycobacterium gilvum]
          Length = 353

 Score =  570 bits (1469), Expect = e-161
 Identities = 287/333 (86%), Positives = 311/333 (93%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAALHAIE D+GI+V+ +++TI+SALLTAYRHT+GH+ DA IDIDRKTGVVKV+AR
Sbjct: 1   MNIDMAALHAIEADKGITVDVVVETIKSALLTAYRHTEGHEADAHIDIDRKTGVVKVMAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           + D+DGNV+ EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGEFS REG+IVAGVIQ
Sbjct: 61  QTDEDGNVLHEWDDTPEGFGRIAATTARQVILQRLRDAENEKNYGEFSAREGDIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RD+RANARGLVVVRMGSETK SEGVIPAAEQV GE YEHG+RLRCYVVGV RGAREP+IT
Sbjct: 121 RDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDRLRCYVVGVARGAREPVIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV SR PGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVTSRAPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSV+VID+ ARAARV+VPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVTVIDEAARAARVIVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAG 333
           LAIGKEGQNARLAARLTGWRIDIR D    + G
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDDADKNGG 333


>tr|A1T7H6|A1T7H6_MYCVP Tax_Id=350058 SubName: Full=NusA
           antitermination factor;[Mycobacterium vanbaalenii]
          Length = 333

 Score =  567 bits (1461), Expect = e-160
 Identities = 286/322 (88%), Positives = 306/322 (95%)

Query: 5   MAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAREVDD 64
           MAALHAIE D+GISV+ ++DTI+SALLTAYRHT+GH+ DA IDIDRKTG VKVIAR+ D+
Sbjct: 1   MAALHAIEADKGISVDVVVDTIKSALLTAYRHTEGHEADAHIDIDRKTGAVKVIARQTDE 60

Query: 65  DGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQRDSR 124
           DGNV+ EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGEFS REG+IVAGVIQRD+R
Sbjct: 61  DGNVLHEWDDTPEGFGRIAATTARQVILQRLRDAENEKNYGEFSAREGDIVAGVIQRDAR 120

Query: 125 ANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLITLSRT 184
           ANARGLVVVRMGSETK SEGVIPAAEQV GE YEHG+RLRCYVVGVTRGAREPLITLSRT
Sbjct: 121 ANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDRLRCYVVGVTRGAREPLITLSRT 180

Query: 185 HPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMGQRVR 244
           HPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAVA+R PGLNAKGACIGPMGQRVR
Sbjct: 181 HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVATRAPGLNAKGACIGPMGQRVR 240

Query: 245 NVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIG 304
           NVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSV+VID+ ARAARV+VPDFQLSLAIG
Sbjct: 241 NVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVTVIDEAARAARVIVPDFQLSLAIG 300

Query: 305 KEGQNARLAARLTGWRIDIRGD 326
           KEGQNARLAARLTGWRIDIR D
Sbjct: 301 KEGQNARLAARLTGWRIDIRSD 322


>tr|B1MD91|B1MD91_MYCA9 Tax_Id=561007 SubName: Full=Transcription
           elongation protein NusA;[Mycobacterium abscessus]
          Length = 331

 Score =  541 bits (1393), Expect = e-152
 Identities = 274/329 (83%), Positives = 301/329 (91%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNID AA++ +  D+GI+V+E +D I+SALLTAYRHT GH+ +ARI+IDRKTGVV+V+AR
Sbjct: 1   MNIDPAAVNLMAADKGITVDEAIDIIKSALLTAYRHTDGHEPNARIEIDRKTGVVRVMAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D DGN+I+EWD TPEGFGRIAATTARQV  Q  RDAENE  +GEFSTREGEIV GVIQ
Sbjct: 61  ETDQDGNLITEWDATPEGFGRIAATTARQVFQQGVRDAENEHKFGEFSTREGEIVGGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RD+RANARGLVVVRMGSETK SEGVIP+AEQV GE Y HG+RLRCYVVGV+RGAREPLIT
Sbjct: 121 RDARANARGLVVVRMGSETKGSEGVIPSAEQVPGEEYHHGDRLRCYVVGVSRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEI+DGSVEIV+VAREAGHRSKIAVAS+V GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEISDGSVEIVAVAREAGHRSKIAVASKVSGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD DPARFVANALSPAKVVSVSVID+  +AARV+VPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDPDPARFVANALSPAKVVSVSVIDEAGKAARVIVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPP 329
           LAIGKEGQNARLAARLTGWRIDIR D+ P
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDADP 329


>tr|C1B311|C1B311_RHOOB Tax_Id=632772 (nusA)SubName:
           Full=Transcription elongation protein NusA;[Rhodococcus
           opacus]
          Length = 343

 Score =  522 bits (1345), Expect = e-146
 Identities = 263/336 (78%), Positives = 301/336 (89%), Gaps = 3/336 (0%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNID+AAL AIE D+GIS+  ++ TI++ALLTAYRHT+GHQ  ARID+D K+G+V+V+A 
Sbjct: 1   MNIDIAALRAIEADKGISIETVISTIQTALLTAYRHTEGHQQHARIDVDTKSGIVRVMAH 60

Query: 61  EVDDDGNVISE-WDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVI 119
           +VD DGN++ E WDDTPEGFGRIAATTARQV+LQR RDAE+ER++GE+ST EGEIV GVI
Sbjct: 61  DVDSDGNMVGEEWDDTPEGFGRIAATTARQVILQRLRDAEHERSFGEYSTHEGEIVGGVI 120

Query: 120 QRDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLI 179
           QRD+RAN+RG+VVVR+GSE   +EG+IP AEQV GE+YEHG RL+CYVVGV RG R P I
Sbjct: 121 QRDTRANSRGMVVVRIGSEASGAEGLIPPAEQVPGENYEHGERLKCYVVGVARGQRGPQI 180

Query: 180 TLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPM 239
           TLSRTHPNLVRKLF+LEVPEIADGSVEI++VAREAGHRSKIAV SRV GLNAKGACIGPM
Sbjct: 181 TLSRTHPNLVRKLFALEVPEIADGSVEIIAVAREAGHRSKIAVQSRVQGLNAKGACIGPM 240

Query: 240 GQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQL 299
           GQRVRNVMSEL+GEKIDIID+DEDPARFV NALSP+KVVSV+V+D  ARAARVVVPDFQL
Sbjct: 241 GQRVRNVMSELAGEKIDIIDFDEDPARFVGNALSPSKVVSVTVVDPEARAARVVVPDFQL 300

Query: 300 SLAIGKEGQNARLAARLTGWRIDIRGDSPPC--SAG 333
           SLAIGKEGQNARLAARLTGWRIDIR D+ P   SAG
Sbjct: 301 SLAIGKEGQNARLAARLTGWRIDIRSDAAPAPESAG 336


>tr|Q0S221|Q0S221_RHOSR Tax_Id=101510 (nusA)SubName:
           Full=Transcription elongation protein NusA;[Rhodococcus
           sp.]
          Length = 343

 Score =  521 bits (1343), Expect = e-146
 Identities = 263/336 (78%), Positives = 301/336 (89%), Gaps = 3/336 (0%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNID+AAL AIE D+GIS+  ++ TI++ALLTAYRHT+GHQ  ARID+D K+G+V+V+A 
Sbjct: 1   MNIDIAALRAIEADKGISIETVISTIQTALLTAYRHTEGHQQHARIDVDTKSGIVRVMAH 60

Query: 61  EVDDDGNVISE-WDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVI 119
           +VD DGN++ E WDDTPEGFGRIAATTARQV+LQR RDAE+ER++GE+ST EGEIV GVI
Sbjct: 61  DVDADGNMVGEEWDDTPEGFGRIAATTARQVILQRLRDAEHERSFGEYSTHEGEIVGGVI 120

Query: 120 QRDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLI 179
           QRD+RAN+RG+VVVR+GSE   +EG+IP AEQV GE+YEHG RL+CYVVGV RG R P I
Sbjct: 121 QRDTRANSRGMVVVRIGSEASGAEGLIPPAEQVPGENYEHGERLKCYVVGVARGQRGPQI 180

Query: 180 TLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPM 239
           TLSRTHPNLVRKLF+LEVPEIADGSVEI++VAREAGHRSKIAV SRV GLNAKGACIGPM
Sbjct: 181 TLSRTHPNLVRKLFALEVPEIADGSVEIIAVAREAGHRSKIAVQSRVQGLNAKGACIGPM 240

Query: 240 GQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQL 299
           GQRVRNVMSEL+GEKIDIID+DEDPARFV NALSP+KVVSV+V+D  ARAARVVVPDFQL
Sbjct: 241 GQRVRNVMSELAGEKIDIIDFDEDPARFVGNALSPSKVVSVTVVDPDARAARVVVPDFQL 300

Query: 300 SLAIGKEGQNARLAARLTGWRIDIRGDSPPC--SAG 333
           SLAIGKEGQNARLAARLTGWRIDIR D+ P   SAG
Sbjct: 301 SLAIGKEGQNARLAARLTGWRIDIRSDAAPAPESAG 336


>tr|C0ZYA3|C0ZYA3_RHOE4 Tax_Id=234621 (nusA)SubName:
           Full=Transcription elongation protein NusA;[Rhodococcus
           erythropolis]
          Length = 343

 Score =  516 bits (1330), Expect = e-144
 Identities = 258/343 (75%), Positives = 302/343 (88%), Gaps = 1/343 (0%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNID+AAL AIE ++G+S+  ++ TI++ALLTAYRHT+GH+ +ARID++ KTG V+V+A 
Sbjct: 1   MNIDIAALRAIEAEKGVSIETVIATIQTALLTAYRHTEGHKQNARIDVNIKTGSVRVMAH 60

Query: 61  EVDDDGNVISE-WDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVI 119
           + D DGN+I E WDDTPEGFGRIAATTARQV+LQR RDAE+ER++GEFST EGEIV GVI
Sbjct: 61  DTDADGNMIGEEWDDTPEGFGRIAATTARQVILQRLRDAEHERSFGEFSTHEGEIVGGVI 120

Query: 120 QRDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLI 179
           QRD+RAN+RG+VVVR+GSE+  +EG++P AEQV GE+YEHG R++CYVVGV RGAR P I
Sbjct: 121 QRDTRANSRGMVVVRIGSESNGAEGLLPPAEQVPGENYEHGERIKCYVVGVARGARGPQI 180

Query: 180 TLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPM 239
           TLSRTHPNLVRKLF+LEVPEIADGSVEI++VAREAGHRSKIAVASRV GLNAKGACIGPM
Sbjct: 181 TLSRTHPNLVRKLFALEVPEIADGSVEIINVAREAGHRSKIAVASRVQGLNAKGACIGPM 240

Query: 240 GQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQL 299
           GQRVRNVMSEL+GEKIDIID+DEDPA FV NALSP+KVVSV+V+D  ARAARV+VPDFQL
Sbjct: 241 GQRVRNVMSELAGEKIDIIDFDEDPATFVGNALSPSKVVSVTVVDPEARAARVIVPDFQL 300

Query: 300 SLAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHG 342
           SLAIGKEGQNARLAARLTGWRIDIR D+ P          S+G
Sbjct: 301 SLAIGKEGQNARLAARLTGWRIDIRSDAAPVGDASDRPATSNG 343


>tr|C3JM53|C3JM53_RHOER Tax_Id=596309 (nusA)SubName:
           Full=Transcription termination factor NusA;[Rhodococcus
           erythropolis SK121]
          Length = 343

 Score =  516 bits (1330), Expect = e-144
 Identities = 258/343 (75%), Positives = 302/343 (88%), Gaps = 1/343 (0%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNID+AAL AIE ++G+S+  ++ TI++ALLTAYRHT+GH+ +ARID++ KTG V+V+A 
Sbjct: 1   MNIDIAALRAIEAEKGVSIETVIATIQTALLTAYRHTEGHKQNARIDVNIKTGSVRVMAH 60

Query: 61  EVDDDGNVISE-WDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVI 119
           + D DGN+I E WDDTPEGFGRIAATTARQV+LQR RDAE+ER++GEFST EGEIV GVI
Sbjct: 61  DTDADGNMIGEEWDDTPEGFGRIAATTARQVILQRLRDAEHERSFGEFSTHEGEIVGGVI 120

Query: 120 QRDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLI 179
           QRD+RAN+RG+VVVR+GSE+  +EG++P AEQV GE+YEHG R++CYVVGV RGAR P I
Sbjct: 121 QRDTRANSRGMVVVRIGSESNGAEGLLPPAEQVPGENYEHGERIKCYVVGVARGARGPQI 180

Query: 180 TLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPM 239
           TLSRTHPNLVRKLF+LEVPEIADGSVEI++VAREAGHRSKIAVASRV GLNAKGACIGPM
Sbjct: 181 TLSRTHPNLVRKLFALEVPEIADGSVEIINVAREAGHRSKIAVASRVQGLNAKGACIGPM 240

Query: 240 GQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQL 299
           GQRVRNVMSEL+GEKIDIID+DEDPA FV NALSP+KVVSV+V+D  ARAARV+VPDFQL
Sbjct: 241 GQRVRNVMSELAGEKIDIIDFDEDPATFVGNALSPSKVVSVTVVDPEARAARVIVPDFQL 300

Query: 300 SLAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHG 342
           SLAIGKEGQNARLAARLTGWRIDIR D+ P          S+G
Sbjct: 301 SLAIGKEGQNARLAARLTGWRIDIRSDAAPVGDASDRPATSNG 343


>tr|Q5YSC4|Q5YSC4_NOCFA Tax_Id=37329 (nusA)SubName: Full=Putative
           transcriptional termination/antitermination
           factor;[Nocardia farcinica]
          Length = 342

 Score =  516 bits (1328), Expect = e-144
 Identities = 257/341 (75%), Positives = 300/341 (87%), Gaps = 1/341 (0%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNI++ AL AI  D+GIS+  ++  I SALLTAYRHT+GHQ +AR+DI+++TG V+V+AR
Sbjct: 1   MNIEIEALRAIVADKGISIETVISAIESALLTAYRHTEGHQPNARVDINQRTGAVRVMAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E+D DGNVISEWDDTPEGFGRIAATTARQV+LQR RDAENE+++GEFST EG+IV GV+Q
Sbjct: 61  ELDADGNVISEWDDTPEGFGRIAATTARQVVLQRLRDAENEKSFGEFSTHEGDIVGGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RD+RANARG VVVR+GSE   +EG+IP AEQV GE+YEHG+R++CYVVGV+RG R P IT
Sbjct: 121 RDARANARGTVVVRIGSELHGTEGLIPPAEQVPGETYEHGDRIKCYVVGVSRGPRGPQIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVR+LF+LEVPEIADGSVEIV+VAREAGHRSKIAV S VPG+NAKGACIGPMG
Sbjct: 181 LSRTHPNLVRRLFALEVPEIADGSVEIVAVAREAGHRSKIAVRSTVPGVNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSEL+GEKIDIIDY +DPA FV NALSP+KVVSV+++D  ARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELAGEKIDIIDYADDPATFVGNALSPSKVVSVTIVDPDARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASH 341
           LAIGKEGQNARLAARLTGWRIDIR D+ P   G   +  +H
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDAAP-DVGDGMRTEAH 340


>tr|D0LBI6|D0LBI6_9ACTO Tax_Id=526226 SubName: Full=Transcription
           termination factor NusA;[Gordonia bronchialis DSM 43247]
          Length = 340

 Score =  501 bits (1289), Expect = e-140
 Identities = 248/329 (75%), Positives = 292/329 (88%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNID+ AL  IE D+GIS++ ++  I +ALLTAYRHT+G    ARID++RKTG V+V+A+
Sbjct: 1   MNIDINALRMIEADKGISIDTVITAIETALLTAYRHTEGFAPHARIDVNRKTGAVRVMAQ 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E+DD+G+V+ EWDDTPEGFGRIAATTARQV+LQR RDAENE+ +G+  T EGEIV GV+Q
Sbjct: 61  ELDDNGDVVHEWDDTPEGFGRIAATTARQVILQRLRDAENEKNFGDLVTHEGEIVGGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           +D+RANARG++VV++GS+  ++EG+IP AEQV GESY HG+R++CYVVGV+RGAR P IT
Sbjct: 121 QDARANARGMIVVQIGSDANSTEGIIPPAEQVPGESYTHGDRIKCYVVGVSRGARGPQIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEI DGSVEIV+VAREAGHRSKIAV + V GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIEDGSVEIVAVAREAGHRSKIAVHTGVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSEL+GEKIDIID+D DPA FV NALSPAKVVSVSV+D TA+AARVVVPD+QLS
Sbjct: 241 QRVRNVMSELAGEKIDIIDFDTDPAVFVGNALSPAKVVSVSVVDPTAKAARVVVPDYQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPP 329
           LAIGKEGQNARLAARLTGWRIDIR D+ P
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDADP 329


>tr|A4FM35|A4FM35_SACEN Tax_Id=405948 (nusA)SubName: Full=Putative
           transcriptional termination/antitermination
           factor;[Saccharopolyspora erythraea]
          Length = 352

 Score =  497 bits (1279), Expect = e-138
 Identities = 254/339 (74%), Positives = 290/339 (85%), Gaps = 8/339 (2%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MN+D+AAL AIE D+GI    +L+ I SALLTAYRHT+GHQ  AR+++DRKTGVV+VIA 
Sbjct: 1   MNVDIAALRAIESDKGIPFETVLEAIESALLTAYRHTEGHQPHARVEVDRKTGVVRVIAH 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
            +  DG V  EWDDTPEGFGRIAATTARQV+LQR RDAE+ERT+GEFST+EGEI+ GVIQ
Sbjct: 61  TLGADGTVAEEWDDTPEGFGRIAATTARQVILQRLRDAEHERTFGEFSTKEGEILGGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RD++AN+RG+V+V++G     SEGVIPAAEQV GE YEHG R++CYVVGV+R AR P IT
Sbjct: 121 RDAKANSRGMVIVQVGD----SEGVIPAAEQVPGERYEHGMRIKCYVVGVSRSARGPQIT 176

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVR+LF+LEVPEIADG+VEI +VAREAGHRSKIAV S V G+NAKGACIGPMG
Sbjct: 177 LSRTHPNLVRRLFALEVPEIADGTVEIPAVAREAGHRSKIAVRSTVGGVNAKGACIGPMG 236

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
            RVRNVMSEL GEKIDIIDY +DPA FV NALSPAKVVSV V+D+ A+ ARVVVPDFQLS
Sbjct: 237 ARVRNVMSELGGEKIDIIDYSDDPATFVGNALSPAKVVSVEVVDERAKTARVVVPDFQLS 296

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGD----SPPCSAGQS 335
           LAIGKEGQNARLAARLTGWRIDIR D    SP  SAGQ+
Sbjct: 297 LAIGKEGQNARLAARLTGWRIDIRSDADPSSPATSAGQA 335


>tr|C2ANX8|C2ANX8_TSUPA Tax_Id=521096 SubName: Full=Transcription
           termination factor NusA;[Tsukamurella paurometabola DSM
           20162]
          Length = 333

 Score =  484 bits (1246), Expect = e-135
 Identities = 239/332 (71%), Positives = 288/332 (86%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMA L AIE ++ ISV  +++ I+ ALLTAY+HT+GH+  ARID++R+TG VKV+A+
Sbjct: 1   MNIDMATLRAIEAEKDISVETVIEAIQVALLTAYKHTEGHEPHARIDVNRRTGEVKVLAQ 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E+D DGN+I+EWDDTPEGFGRIAA +ARQ++ QR RDAEN+RT+GEF+  EGE+V+GV+Q
Sbjct: 61  ELDADGNIITEWDDTPEGFGRIAADSARQLITQRLRDAENDRTFGEFAVYEGEVVSGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
            D+RA ARG VVVR+GSE +  EG++P AEQV GE+YEHG+R++ YVVGV+RG R   IT
Sbjct: 121 ADARAAARGFVVVRIGSEREGHEGLLPPAEQVPGENYEHGDRMKFYVVGVSRGQRGTQIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLV+KLF+LEVPEIADGSVEI SVAREAGHRSKIAV + VPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVKKLFALEVPEIADGSVEITSVAREAGHRSKIAVRTSVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMS+L GEKIDII YD+DPA FV NALSP+ VVSV+++D   +AARVVVPDF+LS
Sbjct: 241 QRVRNVMSDLDGEKIDIIAYDDDPAVFVGNALSPSSVVSVTIVDPKEKAARVVVPDFKLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSA 332
           LAIGKEGQNARLAARLTGWRIDIR D+ P +A
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDADPAAA 332


>tr|C8XJB6|C8XJB6_NAKMY Tax_Id=479431 SubName: Full=NusA
           antitermination factor;[Nakamurella multipartita]
          Length = 336

 Score =  483 bits (1243), Expect = e-134
 Identities = 240/334 (71%), Positives = 277/334 (82%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MN+D+AAL A+E ++GI  N L+DT+ +ALLTAYRHTQGH   AR+ IDRKTG ++V A+
Sbjct: 1   MNVDIAALRAVEKEKGIDFNSLIDTLETALLTAYRHTQGHAGHARVQIDRKTGGIRVWAQ 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E DD G ++ EWDDTPE FGRIAATTARQV+LQR RD +NERT+G+F+ RE +++ G I 
Sbjct: 61  ETDDSGEIVREWDDTPEDFGRIAATTARQVILQRLRDVDNERTFGDFAGREHDLITGTIS 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
            D++ NARG+VVV +G    A EG+IPAAEQV GESY HG RLRCYVV V RG R P IT
Sbjct: 121 ADAKVNARGVVVVSLGEGKNAVEGIIPAAEQVPGESYPHGQRLRCYVVSVARGLRGPQIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLF+LEVPEIADGSVEI +VAREAGHRSKIAV   V G+NAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFALEVPEIADGSVEITAVAREAGHRSKIAVRPAVAGVNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
            RVR VMSEL+GEKIDIIDYDEDPA FV NALSPA+ +S +VID  A+AARVVVPDFQLS
Sbjct: 241 ARVRAVMSELNGEKIDIIDYDEDPATFVGNALSPARALSTTVIDPVAKAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQ 334
           LAIGKEGQNARLAARLTGWRIDIR D+ P  AG+
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDAAPDPAGE 334


>tr|C7MQU9|C7MQU9_SACVD Tax_Id=471857 SubName: Full=Transcription
           termination factor NusA;[Saccharomonospora viridis]
          Length = 348

 Score =  481 bits (1239), Expect = e-134
 Identities = 243/329 (73%), Positives = 282/329 (85%), Gaps = 4/329 (1%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MN+D+AAL AIE D+ I    +L+ I SALLTAY+HT+G Q  ARIDIDRKTG V+VIA 
Sbjct: 1   MNVDIAALRAIEADKDIPFETVLEAIESALLTAYKHTEGRQPHARIDIDRKTGYVRVIAY 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
            +D++G V+ EWDDTPEGFGRIAA TARQV+LQR RDAE+E+TYGEFS +EGEIVAGV+Q
Sbjct: 61  TLDENGEVVEEWDDTPEGFGRIAAATARQVILQRLRDAEHEKTYGEFSAQEGEIVAGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RD++ANARG+V+V++G     +EGV+P AEQV GE YEHG RL+ YVVGV+R AR P IT
Sbjct: 121 RDAKANARGMVIVQVGD----TEGVLPPAEQVPGEVYEHGARLKAYVVGVSRTARGPQIT 176

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLF+LEVPEIADG+VEI +VAREAGHRSKIAV S VPG+NAKGACIG +G
Sbjct: 177 LSRTHPNLVRKLFALEVPEIADGTVEITAVAREAGHRSKIAVRSTVPGVNAKGACIGHVG 236

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
            RVRNVMSEL GEKIDIID+ +DPARFV NALSPAKVVSV V+D+  + ARV+VPDFQLS
Sbjct: 237 ARVRNVMSELGGEKIDIIDHSDDPARFVGNALSPAKVVSVDVVDERTKTARVIVPDFQLS 296

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPP 329
           LAIGKEGQNARLAARLTGWRIDIR D+ P
Sbjct: 297 LAIGKEGQNARLAARLTGWRIDIRSDAAP 325


>tr|C6WDK9|C6WDK9_ACTMD Tax_Id=446462 SubName: Full=NusA
           antitermination factor;[Actinosynnema mirum]
          Length = 337

 Score =  477 bits (1227), Expect = e-132
 Identities = 237/327 (72%), Positives = 283/327 (86%), Gaps = 4/327 (1%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MN+D+AAL AIE D+ I  + +L+ I +ALLTAY+HT GH   +R++IDRK+G V+V+A+
Sbjct: 1   MNVDIAALRAIERDKDIPFDTVLEAIETALLTAYKHTDGHHPHSRVEIDRKSGAVRVLAQ 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ++  DG V  EWDDTPEGFGRIAATTARQV+LQR RDAE+ERT+GEFS +EGEI+ GV+Q
Sbjct: 61  DLGPDGVVTEEWDDTPEGFGRIAATTARQVILQRLRDAEHERTFGEFSAKEGEIIGGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           RD+RANARG+VVV++G     +EGV+P AEQV GE Y+HG R++CYVVGV+R AR P IT
Sbjct: 121 RDARANARGMVVVQVGD----TEGVLPPAEQVPGEEYKHGARIKCYVVGVSRSARGPQIT 176

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVR+LF+LEVPEIADG+VEI +VAREAGHRSKIAV + VPG+NAKGACIGPMG
Sbjct: 177 LSRTHPNLVRRLFALEVPEIADGTVEIPAVAREAGHRSKIAVRTSVPGVNAKGACIGPMG 236

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
            RVRNVMSEL+GEKIDIID+ +DPA FV NALSPAKVVSV V+D+ A+ ARVVVPDFQLS
Sbjct: 237 ARVRNVMSELAGEKIDIIDHSDDPATFVGNALSPAKVVSVRVLDERAKTARVVVPDFQLS 296

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDS 327
           LAIGKEGQNARLAARLTGWRIDIR D+
Sbjct: 297 LAIGKEGQNARLAARLTGWRIDIRSDA 323


>tr|C1UIN5|C1UIN5_9ACTO Tax_Id=526225 SubName: Full=Transcription
           termination factor NusA;[Geodermatophilus obscurus DSM
           43160]
          Length = 381

 Score =  437 bits (1123), Expect = e-120
 Identities = 221/335 (65%), Positives = 269/335 (80%), Gaps = 4/335 (1%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNID+ AL A+E ++GI  + +++ I +AL+TAYRH  G     R+ +DRKTG V V+A+
Sbjct: 1   MNIDVTALKAVEREKGIPADTVIEAIETALVTAYRHADGASKHVRVHVDRKTGEVAVLAQ 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E+  DG V+ EWDDTP  FGRIAA+TA+QV++QR RDAE+E+T+GE++ +EG+IV+G++Q
Sbjct: 61  ELGPDGEVVREWDDTPSDFGRIAASTAKQVIVQRLRDAEHEQTFGEYAGKEGDIVSGIVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
            D R NA G V+V +G      E V+PAAEQV GESY HG+RLR YVV V R  R P +T
Sbjct: 121 ADQRRNASGTVLVDIGKV----EAVLPAAEQVPGESYPHGSRLRAYVVSVARTYRGPQVT 176

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           +SRTHPNLVRKLF+LEVPEIADGSVEIV+VAREAGHRSKIAV + VPGLNAKGACIGPMG
Sbjct: 177 VSRTHPNLVRKLFALEVPEIADGSVEIVAVAREAGHRSKIAVRTSVPGLNAKGACIGPMG 236

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSEL GEKIDI+D+ +DPA FVA+ALSPA+V S  ++D  A+A RVVVPDFQLS
Sbjct: 237 QRVRNVMSELHGEKIDIVDWSDDPATFVASALSPARVNSAQLVDPKAKAVRVVVPDFQLS 296

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQS 335
           LAIGKEGQNARLAARLTG RIDIR D+ P  A  S
Sbjct: 297 LAIGKEGQNARLAARLTGCRIDIRSDAQPDDAAPS 331


>tr|A0LV29|A0LV29_ACIC1 Tax_Id=351607 SubName: Full=NusA
           antitermination factor;[Acidothermus cellulolyticus]
          Length = 348

 Score =  414 bits (1065), Expect = e-114
 Identities = 220/347 (63%), Positives = 269/347 (77%), Gaps = 16/347 (4%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNIDMAAL ++E ++ IS + L+  I +ALLTAY+ T+G    AR+ +DRKTG V V+A 
Sbjct: 1   MNIDMAALRSLEREKDISFDLLVQAIETALLTAYQRTEGAYPRARVVLDRKTGEVTVLAA 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D +GNVI E+D TP+ F RIAA TA+QV+LQR RDAE+E T+GE++ REG++V G+IQ
Sbjct: 61  ETDAEGNVIREFDHTPQDFNRIAAMTAKQVILQRLRDAEHELTFGEYAGREGDVVGGIIQ 120

Query: 121 R--DSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPL 178
           +  DSR      V V +G      EGV+P  EQV GE Y HG R+RCYV+ V +G R P 
Sbjct: 121 QQHDSRN-----VYVNLGKV----EGVLPVTEQVPGERYVHGERIRCYVLSVHKGIRGPQ 171

Query: 179 ITLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGP 238
           ITLSRTHP LVRKLF+LEVPEIADGSVEIV++AREAGHR+KIAV S+VPGLNAKGACIGP
Sbjct: 172 ITLSRTHPGLVRKLFALEVPEIADGSVEIVALAREAGHRTKIAVRSKVPGLNAKGACIGP 231

Query: 239 MGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQ 298
           +GQRVR VM+EL GEKIDIIDY +DPA FVANALSPA+V SV ++D   ++ARV+VPD+Q
Sbjct: 232 LGQRVRAVMAELHGEKIDIIDYSDDPATFVANALSPARVTSVEIVDPVTKSARVIVPDYQ 291

Query: 299 LSLAIGKEGQNARLAARLTGWRIDIRGD-----SPPCSAGQSEQNAS 340
           LSLAIG+EGQNARLAARLTGWRIDIR D     SP  + GQ   ++S
Sbjct: 292 LSLAIGREGQNARLAARLTGWRIDIRPDTEAALSPGDADGQHPASSS 338


>tr|C4RD67|C4RD67_9ACTO Tax_Id=219305 SubName: Full=Transcription
           elongation factor nusA;[Micromonospora sp. ATCC 39149]
          Length = 347

 Score =  414 bits (1065), Expect = e-114
 Identities = 210/327 (64%), Positives = 255/327 (77%), Gaps = 4/327 (1%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNID+AAL A+E +R I  + +L  I +ALLTAYRHT+G +  AR++IDRK G   V A+
Sbjct: 1   MNIDLAALRALEREREIPFDTILAAIETALLTAYRHTEGAESHARVEIDRKNGAALVYAQ 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E+DDDG V+ EWDDTP  FGRIAA TA+QV+LQR R+A +E  +GE+  R+G++V GV+Q
Sbjct: 61  ELDDDGTVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEVHFGEYVGRDGDLVTGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
                + +G+V V +G      EGV+P +EQV GE Y HG R+RC VV V +G R P IT
Sbjct: 121 AHEARSEKGIVSVDLGK----LEGVLPQSEQVPGERYTHGERIRCVVVHVAKGMRGPQIT 176

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSR+HP LV+KLF+LEVPEIADG+VEI ++AREAGHR+KIAV S VPG+NAKGACIGPMG
Sbjct: 177 LSRSHPALVKKLFALEVPEIADGTVEIGAIAREAGHRTKIAVRSAVPGVNAKGACIGPMG 236

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVR VMSEL GEKIDIID+ +DPA FV NALSPAK + V V+D   R ARV VPDFQLS
Sbjct: 237 QRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLATRTARVTVPDFQLS 296

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDS 327
           LAIG+EGQNARLAARLTGWRIDIR D+
Sbjct: 297 LAIGREGQNARLAARLTGWRIDIRSDA 323


>tr|A8M744|A8M744_SALAI Tax_Id=391037 SubName: Full=NusA
           antitermination factor;[Salinispora arenicola]
          Length = 347

 Score =  414 bits (1063), Expect = e-113
 Identities = 211/329 (64%), Positives = 254/329 (77%), Gaps = 4/329 (1%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNID+AAL A+E +R I  + +L  I +ALLTAYRHT+G Q  AR++IDRKTGV  V A+
Sbjct: 1   MNIDLAALRALEREREIPFDTILAAIETALLTAYRHTEGAQPHARVEIDRKTGVALVYAQ 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E+D DG V+ EWDDTP  FGRIAA TA+QV+LQR R+A +E  +GE+  R+G++V GV+Q
Sbjct: 61  EMDADGGVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEVHFGEYVGRDGDLVTGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
                  +G+V V +G      EGV+P +EQV GE Y HG R+RC VV V +G R P +T
Sbjct: 121 AHEARAEKGIVSVDLGK----LEGVLPQSEQVPGEQYAHGERVRCVVVHVAKGVRGPQVT 176

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSR+HP LV+KLF+LEVPEIADG+VEI ++AREAGHR+KIAV S   G+NAKGACIGPMG
Sbjct: 177 LSRSHPALVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRSTAAGVNAKGACIGPMG 236

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVR VMSEL GEKIDIID+ EDPA FV NALSPAK + V V+D  +R ARV VPDFQLS
Sbjct: 237 QRVRAVMSELHGEKIDIIDWSEDPATFVGNALSPAKALRVDVVDLASRTARVTVPDFQLS 296

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPP 329
           LAIG+EGQNARLAARLTGWRIDIR D  P
Sbjct: 297 LAIGREGQNARLAARLTGWRIDIRSDVEP 325


>tr|C2AED2|C2AED2_THECU Tax_Id=471852 SubName: Full=Transcription
           termination factor NusA;[Thermomonospora curvata DSM
           43183]
          Length = 355

 Score =  414 bits (1063), Expect = e-113
 Identities = 215/334 (64%), Positives = 262/334 (78%), Gaps = 7/334 (2%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           M+IDMAAL ++E ++ IS+  +   I  ALL AY  T+G    AR+++DRKTG V V A 
Sbjct: 1   MDIDMAALRSLESEKDISLELVAQAIEDALLIAYHRTEGAAPRARVELDRKTGHVTVWAA 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E DD+GNV+ E+DDTPE F RIAATTA+QV+LQ+ RDAE+E T+GE++ REG+IV+GVIQ
Sbjct: 61  ETDDEGNVLREYDDTPEDFSRIAATTAKQVILQKLRDAEDEVTFGEYAGREGDIVSGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           +         V+V +G      E ++P +EQV GESYEHG+R+R YVV V +G R P + 
Sbjct: 121 QGKDPRN---VLVDLGR----IEAILPPSEQVPGESYEHGDRIRAYVVQVRKGHRGPSVQ 173

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLF+LEVPEIADG+VEI ++AREAGHR+KIAV SR PG+NAKGACIGPMG
Sbjct: 174 LSRTHPNLVRKLFALEVPEIADGTVEIAAIAREAGHRTKIAVRSRKPGVNAKGACIGPMG 233

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
            RVRNVM EL GEKIDI+D+ EDPA FV NALSPA+V SV VID+ AR ARV+VPD+QLS
Sbjct: 234 SRVRNVMHELRGEKIDIVDWSEDPAEFVGNALSPARVSSVQVIDEAARTARVIVPDYQLS 293

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQ 334
           LAIGKEGQNARLAARLTGWRIDIR D+    +GQ
Sbjct: 294 LAIGKEGQNARLAARLTGWRIDIRPDTEVEQSGQ 327


>tr|A4X4N5|A4X4N5_SALTO Tax_Id=369723 SubName: Full=Transcription
           termination factor NusA;[Salinispora tropica]
          Length = 347

 Score =  413 bits (1062), Expect = e-113
 Identities = 212/337 (62%), Positives = 257/337 (76%), Gaps = 5/337 (1%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           MNID+AAL A+E +R I  + +L  I +ALLTAYRHT+G Q  AR++IDRKTG   V A+
Sbjct: 1   MNIDLAALRALEREREIPFDTILAAIETALLTAYRHTEGAQPHARVEIDRKTGAALVFAQ 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           EV+ DG V+ EWDDTP  FGRIAA TA+QV+LQR R+A +E  +GE+  R+G++V GV+Q
Sbjct: 61  EVEPDGGVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEVHFGEYVGRDGDLVTGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
                  +G+V V +G      EGV+P +EQV GE Y HG R+RC VV V +G R P +T
Sbjct: 121 AHEARAEKGIVSVDLGK----LEGVLPQSEQVPGEQYAHGERVRCVVVHVAKGVRGPQVT 176

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSR+HP LV+KLF+LEVPEIADG+VEI ++AREAGHR+KIAV S   G+NAKGACIGPMG
Sbjct: 177 LSRSHPALVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRSTAAGVNAKGACIGPMG 236

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVR VM EL GEKIDIID+ EDPA FV NALSPAK + V V+D  +R ARV VPDFQLS
Sbjct: 237 QRVRAVMGELHGEKIDIIDWSEDPAAFVGNALSPAKALRVEVVDLASRTARVTVPDFQLS 296

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPC-SAGQSE 336
           LAIG+EGQNARLAARLTGWRIDIR D+ P   AG +E
Sbjct: 297 LAIGREGQNARLAARLTGWRIDIRSDAEPARPAGNAE 333


>tr|C4DMD5|C4DMD5_9ACTO Tax_Id=446470 SubName: Full=Transcription
           termination factor NusA;[Stackebrandtia nassauensis DSM
           44728]
          Length = 347

 Score =  409 bits (1052), Expect = e-112
 Identities = 209/329 (63%), Positives = 257/329 (78%), Gaps = 4/329 (1%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           M+ID+ AL ++E +R I  + ++D I SALLTAYRHT   Q  AR++++R+TG V V AR
Sbjct: 1   MHIDLVALRSLEHERDIPFHTIIDAIESALLTAYRHTPDAQSHARVEVNRETGTVTVRAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           EVD +GNV+ EWDDTP+ FGRIAA TA+QV++QR R+A ++  +GEF++ EG++V GVIQ
Sbjct: 61  EVDAEGNVVREWDDTPDDFGRIAAMTAKQVIMQRLREATDDVNFGEFASLEGDVVTGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
               A+ +G V+V +G      E ++P  EQV GE+Y HG RLR  VV V+RG R P IT
Sbjct: 121 AHEGASEKGTVMVDLGK----IEAMLPHVEQVPGENYSHGRRLRAAVVQVSRGPRGPQIT 176

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           +SR+HPNLV+KLF+ EVPEIADG VEI +VAREAGHR+KIAV + V  LNAKGACIGPMG
Sbjct: 177 VSRSHPNLVKKLFAAEVPEIADGLVEIAAVAREAGHRTKIAVRATVADLNAKGACIGPMG 236

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
            RVR VMSEL GEKIDIIDY EDPA FV NALSP+KVVSV V+D   + ARVVVPDFQLS
Sbjct: 237 SRVRAVMSELDGEKIDIIDYSEDPATFVGNALSPSKVVSVEVLDPDDKVARVVVPDFQLS 296

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPP 329
           LAIG+EGQNARLAARLTGWRIDI+ D+ P
Sbjct: 297 LAIGREGQNARLAARLTGWRIDIKSDAAP 325


>tr|C1WYL5|C1WYL5_9ACTO Tax_Id=479435 SubName: Full=Transcription
           termination factor NusA;[Kribbella flavida DSM 17836]
          Length = 330

 Score =  406 bits (1043), Expect = e-111
 Identities = 212/329 (64%), Positives = 258/329 (78%), Gaps = 11/329 (3%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           M+IDMA L ++E ++ I+   +++ I  ALL AY  T+G Q  AR ++DRKTG V V AR
Sbjct: 1   MDIDMAVLRSLEREKDIAFEVVVEAIEQALLVAYHRTEGAQQHARAELDRKTGHVTVFAR 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E+  DG ++ E+DDTP  FGRIAATTA+QV+LQR RDAE+E  YGEFS +EG+IV+GV+Q
Sbjct: 61  EMGPDGTLVREYDDTPADFGRIAATTAKQVILQRLRDAEDEVRYGEFSGKEGDIVSGVVQ 120

Query: 121 --RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPL 178
             RD R+     V+V +G      E V+P  EQV GE YEHG+RLR YVVGV +G + P 
Sbjct: 121 QGRDPRS-----VMVDLGK----IEAVLPGPEQVPGEKYEHGSRLRVYVVGVRKGFKGPQ 171

Query: 179 ITLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGP 238
           IT+SRTHPNLV+KLF+LEVPEIADG+VEI ++AREAGHR+KIAV +  P +N KGACIGP
Sbjct: 172 ITVSRTHPNLVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRTLNPSVNGKGACIGP 231

Query: 239 MGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQ 298
           MGQRVRN+M EL GEKIDIID+ +DPA FV NALSPA+V SV V+D  ARAARVVVPD+Q
Sbjct: 232 MGQRVRNIMHELHGEKIDIIDHSDDPATFVGNALSPAQVSSVEVVDAAARAARVVVPDYQ 291

Query: 299 LSLAIGKEGQNARLAARLTGWRIDIRGDS 327
           LSLAIGKEGQNARLAARLTGWRIDIR D+
Sbjct: 292 LSLAIGKEGQNARLAARLTGWRIDIRPDT 320


>tr|A1SLK9|A1SLK9_NOCSJ Tax_Id=196162 SubName: Full=Transcription
           termination factor NusA;[Nocardioides sp.]
          Length = 327

 Score =  401 bits (1031), Expect = e-110
 Identities = 202/326 (61%), Positives = 257/326 (78%), Gaps = 7/326 (2%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           M+IDM+ L  +E ++ IS + L++ I  ALLTAY  + G    AR+ +DRK+G V V+A 
Sbjct: 1   MDIDMSILRMLEREKEISFDVLVEAIEQALLTAYHKSPGAHEQARVVLDRKSGHVTVLAS 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           EVD++GN + E+DDTP GFGRIAATTA+Q+MLQR RDAE++  +GEFS +EG+I++G+IQ
Sbjct: 61  EVDEEGNAVGEYDDTPAGFGRIAATTAKQIMLQRLRDAEDDVRFGEFSGKEGDIISGIIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           +    +    V+V +G      E ++P  E+V GE Y+HG R++C VV V +G R P IT
Sbjct: 121 QGRNPDD---VMVDLGK----LEALLPVGERVPGERYDHGTRIKCLVVSVRKGMRGPQIT 173

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSR+HPNLV+KLF+LEVPEIADG+VEI ++AREAGHR+K+AV S VPG+NAKGACIGPMG
Sbjct: 174 LSRSHPNLVKKLFALEVPEIADGTVEIAAIAREAGHRTKLAVRSTVPGVNAKGACIGPMG 233

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
            RVR VMSEL GEKIDI+D+ EDPA  VA+ALSPA+V SV ++D  A++ARVVVPDFQLS
Sbjct: 234 SRVRAVMSELHGEKIDIVDWSEDPAEMVAHALSPARVTSVEIVDAAAKSARVVVPDFQLS 293

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGD 326
           LAIGKEGQNARLAARLTGWRIDIR D
Sbjct: 294 LAIGKEGQNARLAARLTGWRIDIRSD 319


>tr|C5BWS5|C5BWS5_BEUC1 Tax_Id=471853 SubName: Full=NusA
           antitermination factor;[Beutenbergia cavernae]
          Length = 346

 Score =  399 bits (1024), Expect = e-109
 Identities = 210/346 (60%), Positives = 263/346 (76%), Gaps = 9/346 (2%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           M+IDM+AL A+E +R IS++ L+  I  ALL+AY  T G   +AR+ +DR++G V V+A 
Sbjct: 1   MDIDMSALRALEREREISLDVLVGAIEQALLSAYERTPGAYPEARVHLDRQSGHVTVLAT 60

Query: 61  EVDDDGN--VISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGV 118
           EV  +G+  V  E+D TPEGFGRIA +TARQV++QR RDAE+++  G F  REGE++AGV
Sbjct: 61  EVVGEGDEEVRREFDHTPEGFGRIATSTARQVIIQRLRDAEDDQVLGTFRGREGELIAGV 120

Query: 119 IQRDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPL 178
           +Q+  R    G V+V +G      E V+P  EQV GESY HG R+R YV+ V+RG + P 
Sbjct: 121 VQQGGRV---GAVLVDVGGV----EAVLPPHEQVPGESYPHGERIRAYVLDVSRGLKGPS 173

Query: 179 ITLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGP 238
           ITLSRTHPN VR++F+LEVPE+ADGSVEI ++AREAGHR+K+AV S VPG+ AKGACIGP
Sbjct: 174 ITLSRTHPNFVRRMFALEVPEVADGSVEIAALAREAGHRTKMAVRSLVPGVGAKGACIGP 233

Query: 239 MGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQ 298
           MGQRVR VM+EL GEKIDI+D+ EDPARFVA ALSPA+V SV ++D  AR+ARV+VPD+Q
Sbjct: 234 MGQRVRAVMAELRGEKIDIVDFSEDPARFVAAALSPARVSSVQIVDAEARSARVIVPDYQ 293

Query: 299 LSLAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMA 344
           LSLAIGKEGQNARLAARLTGWRIDIR D+ P     SE     G A
Sbjct: 294 LSLAIGKEGQNARLAARLTGWRIDIRPDTQPADDAASEDATPSGDA 339


>tr|A6W7Z0|A6W7Z0_KINRD Tax_Id=266940 SubName: Full=NusA
           antitermination factor;[Kineococcus radiotolerans]
          Length = 339

 Score =  399 bits (1024), Expect = e-109
 Identities = 210/339 (61%), Positives = 263/339 (77%), Gaps = 15/339 (4%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQ--GHQI--DARIDIDRKTGVVK 56
           MNIDMAAL  +E +R I    L+ TI  ALL AY  T+   H+   DAR+++DR +G V+
Sbjct: 1   MNIDMAALRMLEREREIPFETLVRTIEQALLVAYHRTEHEDHKAHPDARVELDRASGEVR 60

Query: 57  VIAREVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVA 116
           V+A+E DD G V+ E+DDTP GFGRIAATTARQV+LQR RDAE++   GE++  EGEIV+
Sbjct: 61  VLAKERDDAGLVVGEFDDTPSGFGRIAATTARQVILQRLRDAEDDAVIGEYAQTEGEIVS 120

Query: 117 GVIQ--RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGA 174
           GV+Q  RD R     +V V +GS     EGV+P  EQV GE YEHG+RLRC+VV V +G 
Sbjct: 121 GVVQQGRDPR-----MVQVDLGS----LEGVLPPQEQVPGEKYEHGSRLRCFVVSVKKGP 171

Query: 175 REPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGA 234
           + P + LSR+HP LV+KLF+LEVPEIADG+V+I +++REAGHRSK+AV +   G+NAKGA
Sbjct: 172 KGPQVVLSRSHPQLVKKLFALEVPEIADGTVQITALSREAGHRSKMAVRATRGGVNAKGA 231

Query: 235 CIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVV 294
           CIGPMGQRVR VM+EL GEKIDI+D+ +DPA+FV NALSPA+V SV V+D  AR+ARV+V
Sbjct: 232 CIGPMGQRVRAVMAELRGEKIDIVDHSDDPAQFVGNALSPARVSSVEVVDLAARSARVIV 291

Query: 295 PDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPPCSAG 333
           PD+QLSLAIGKEGQNARLAA+LTGWRIDIR D+ P + G
Sbjct: 292 PDYQLSLAIGKEGQNARLAAKLTGWRIDIRPDTEPTAGG 330


>tr|C8NTZ4|C8NTZ4_9CORY Tax_Id=585529 (nusA)SubName: Full=N
           utilization substance protein A;[Corynebacterium
           genitalium ATCC 33030]
          Length = 341

 Score =  399 bits (1024), Expect = e-109
 Identities = 202/342 (59%), Positives = 255/342 (74%), Gaps = 9/342 (2%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQ--------GHQIDARIDIDRKT 52
           MNID+AAL  IE + GI V++LL TI SALL AYR  +        G    AR+DID +T
Sbjct: 1   MNIDIAALKQIESEAGIPVDDLLGTIASALLFAYREGKDEFGTGAAGEGTKARVDIDTQT 60

Query: 53  GVVKVIAREVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREG 112
           G V V+  E+DDDGNVISE+DDTP  F R+ A   R  +L+R R A + R Y  +S  EG
Sbjct: 61  GAVAVMVSELDDDGNVISEYDDTPVNFSRVGAQAVRDAILKRMRTAADNRAYSAYSELEG 120

Query: 113 EIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTR 172
           ++V+GV+QRD+ AN RG+VVV++G+E+   +G++  AEQ+ GE  EHG+R++CYVVGV+ 
Sbjct: 121 QVVSGVVQRDASANERGIVVVQLGTESDPQDGILLPAEQIPGEKLEHGDRVKCYVVGVSG 180

Query: 173 GAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAK 232
           G R   + LSRTHP LVR LF+LEVPE+ADGSVEIV++AREAGHRSK+AV     G+NAK
Sbjct: 181 GDRRTTVNLSRTHPELVRGLFALEVPEVADGSVEIVAIAREAGHRSKVAVKGVAKGINAK 240

Query: 233 GACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARV 292
           GACIGP G RV N+M  L GEKIDI+DY +DPA +V N+L+P+KVV V V+D  A+ ARV
Sbjct: 241 GACIGPRGARVTNIMESLGGEKIDIVDYSDDPAVYVGNSLAPSKVVRVDVVDHDAQTARV 300

Query: 293 VVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQ 334
           VVPD+QLSLAIG+EGQNARLAARLTGW+IDI  D+   SAGQ
Sbjct: 301 VVPDYQLSLAIGREGQNARLAARLTGWKIDIHSDA-DLSAGQ 341


>tr|C7QDY5|C7QDY5_CATAD Tax_Id=479433 SubName: Full=NusA
           antitermination factor;[Catenulispora acidiphila]
          Length = 324

 Score =  394 bits (1012), Expect = e-108
 Identities = 208/333 (62%), Positives = 255/333 (76%), Gaps = 12/333 (3%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           M+I  +AL  +E DRGI   +L++ I +ALL AY+ T G +  AR+ +DR +G V V A 
Sbjct: 1   MDIPTSALRDLEKDRGIPFEKLVEDIEAALLIAYKRTDGAKTRARVQVDRSSGHVTVWAV 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E  +DG+   E+DDTP  FGRIA+TTA+QV+LQR RD E+E+T+GEFS R+G+++ GV+Q
Sbjct: 61  EDIEDGST-REYDDTPSEFGRIASTTAKQVILQRLRDHEDEQTFGEFSGRKGDLITGVVQ 119

Query: 121 --RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPL 178
             RD RA     V+V +G      EG +PAAEQV GE Y HG RL+CYVV V RG R P 
Sbjct: 120 QGRDPRA-----VLVNIGK----IEGTLPAAEQVPGEEYRHGERLKCYVVDVRRGQRGPQ 170

Query: 179 ITLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGP 238
           +TLSRTHP+LVRKLF+LEVPEIA+G+VEI ++AREAGHR+KIAV S   G+NAKGACIGP
Sbjct: 171 VTLSRTHPDLVRKLFALEVPEIAEGAVEITAIAREAGHRTKIAVRSHRAGVNAKGACIGP 230

Query: 239 MGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQ 298
           MG RVRNVM+EL GEKIDI+D+ EDPA  V NALSPA+V  V V+D   R+ARV+VPDFQ
Sbjct: 231 MGARVRNVMAELHGEKIDIVDWSEDPAEMVGNALSPARVSKVQVVDLDQRSARVIVPDFQ 290

Query: 299 LSLAIGKEGQNARLAARLTGWRIDIRGDSPPCS 331
           LSLAIGKEGQNARLAARLTGWRIDIR D+ P S
Sbjct: 291 LSLAIGKEGQNARLAARLTGWRIDIRSDAEPIS 323


>tr|Q47RV3|Q47RV3_THEFY Tax_Id=269800 SubName: Full=Transcription
           termination factor NusA;[Thermobifida fusca]
          Length = 329

 Score =  393 bits (1009), Expect = e-107
 Identities = 204/327 (62%), Positives = 252/327 (77%), Gaps = 7/327 (2%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60
           M+IDM+ L ++E ++ ISV+ ++  I  ALL AYR  +G   +AR+++DR TG V V A 
Sbjct: 1   MDIDMSVLRSLEREKDISVDLVVKAIEDALLIAYRRQEGPDTNARVELDRATGHVTVWAE 60

Query: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D++G +I E+D TP GFGRIAA+TA+QV+LQR RDAE+E T GEF+ RE +IV+GV+Q
Sbjct: 61  ERDEEGRLIREYDATPSGFGRIAASTAKQVILQRLRDAEDEITLGEFAGRESQIVSGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180
           +         V+V +G      E ++P  EQV  E+Y HG RLR YVV V RG R P IT
Sbjct: 121 QGKDPRN---VLVDLGRV----EAILPPQEQVPTETYTHGERLRAYVVQVRRGHRGPSIT 173

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLF LEVPEIADG+VEI ++AREAGHR+K+AV S  PG+NAKGACIGP+G
Sbjct: 174 LSRTHPNLVRKLFELEVPEIADGTVEIAAIAREAGHRTKMAVKSNKPGVNAKGACIGPLG 233

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
            RVRNVM+EL GEKIDI+DY +DPA+FVANALSPA+V  V V+D  AR ARV+VPD+Q S
Sbjct: 234 SRVRNVMNELRGEKIDIVDYSDDPAQFVANALSPAQVTHVEVLDAAARVARVIVPDYQQS 293

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDS 327
           LAIGKEGQNARLAARLTGWRIDIR D+
Sbjct: 294 LAIGKEGQNARLAARLTGWRIDIRSDT 320


>tr|Q6NGN0|Q6NGN0_CORDI Tax_Id=1717 SubName: Full=Putative N
           utilization related protein;[Corynebacterium
           diphtheriae]
          Length = 332

 Score =  392 bits (1007), Expect = e-107
 Identities = 194/331 (58%), Positives = 252/331 (76%), Gaps = 4/331 (1%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQG----HQIDARIDIDRKTGVVK 56
           MNID+ AL AIE DR I+V+ELL+TI  ALL AY+  +         AR+DI+  TG V 
Sbjct: 1   MNIDVQALKAIEADRNIAVDELLETIARALLFAYQEYKDTNTVENSRARVDINSVTGHVS 60

Query: 57  VIAREVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVA 116
           VI  E+D+DG V +E+DDTPE FGR+ A   R  +++R R+AE  + Y  +S  EG +V+
Sbjct: 61  VIVSELDEDGVVTTEYDDTPENFGRVGAQAVRDAIVRRLREAETLKAYDAYSEYEGRVVS 120

Query: 117 GVIQRDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGARE 176
           G++Q D  AN +G+VV+ +G+E    +G++  AEQ+ GES++HG+R++ YVVG+ R  R+
Sbjct: 121 GIVQADIFANEKGIVVIHLGTEVDGQDGILIPAEQIPGESFKHGDRVKAYVVGINRTPRD 180

Query: 177 PLITLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACI 236
             I LSRTHP LVR+LF LEVPE+ADGSVEI+ +AREAGHRSK+AV + V GLNAKGACI
Sbjct: 181 LQINLSRTHPELVRRLFELEVPEVADGSVEIIGIAREAGHRSKVAVKATVKGLNAKGACI 240

Query: 237 GPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPD 296
           GP GQRV N+M+EL GEKIDIID+D+DPA+FV NAL+P+KVV V + D  A+ A+V VPD
Sbjct: 241 GPRGQRVNNIMNELGGEKIDIIDFDDDPAKFVGNALAPSKVVHVEITDAEAQTAQVTVPD 300

Query: 297 FQLSLAIGKEGQNARLAARLTGWRIDIRGDS 327
           +QLSLAIGKEGQNARLAARLTGW+IDIR D+
Sbjct: 301 YQLSLAIGKEGQNARLAARLTGWKIDIRSDA 331


>tr|C5VCQ9|C5VCQ9_9CORY Tax_Id=553207 (nusA)SubName:
           Full=Transcription termination factor
           NusA;[Corynebacterium matruchotii ATCC 14266]
          Length = 332

 Score =  390 bits (1003), Expect = e-106
 Identities = 196/331 (59%), Positives = 246/331 (74%), Gaps = 4/331 (1%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQ----GHQIDARIDIDRKTGVVK 56
           MNID+ AL AIE ++GISV  LL+TI SAL+ AYR  +         AR+DID  TG V 
Sbjct: 1   MNIDVQALKAIETEKGISVQVLLETIASALMHAYREYKDAPPAPNTQARVDIDIATGAVA 60

Query: 57  VIAREVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVA 116
           VI  E+DD+GNV+ E DDTP  F RI     R  +++R R+AE  + Y  +S  EG +V+
Sbjct: 61  VIISELDDEGNVVQEHDDTPANFERIGTVAVRDAIVKRLREAETRQAYDAYSEYEGRVVS 120

Query: 117 GVIQRDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGARE 176
           GV+Q D  AN RG+VVV +G+E    +G++  AEQ+ GE  +HG+R++ +VVGV   +  
Sbjct: 121 GVVQADIHANERGIVVVHLGTEADGQDGILLPAEQIPGEQLKHGDRVKSFVVGVNHNSHS 180

Query: 177 PLITLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACI 236
             I LSRTHP LVR+LF LE+PE+ADGSVEIVS+AREAGHRSK+AV +RV GLNAKGACI
Sbjct: 181 LSINLSRTHPELVRRLFELEIPEVADGSVEIVSIAREAGHRSKVAVRARVKGLNAKGACI 240

Query: 237 GPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPD 296
           GP GQRV N+M EL+GEKIDIIDY ++PA +V NAL+P+KVV V +ID TA+ ARV VP 
Sbjct: 241 GPRGQRVTNIMKELNGEKIDIIDYSDNPAEYVGNALAPSKVVDVEIIDATAQTARVTVPH 300

Query: 297 FQLSLAIGKEGQNARLAARLTGWRIDIRGDS 327
           +QLSLAIGKEGQNARLAARLTGW+IDIR D+
Sbjct: 301 YQLSLAIGKEGQNARLAARLTGWKIDIRSDA 331


>tr|C0E2H0|C0E2H0_9CORY Tax_Id=566549 SubName: Full=Putative
           uncharacterized protein;[Corynebacterium matruchotii
           ATCC 33806]
          Length = 332

 Score =  390 bits (1003), Expect = e-106
 Identities = 196/331 (59%), Positives = 246/331 (74%), Gaps = 4/331 (1%)

Query: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQ----GHQIDARIDIDRKTGVVK 56
           MNID+ AL AIE ++GISV  LL+TI SAL+ AYR  +         AR+DID  TG V 
Sbjct: 1   MNIDVQALKAIETEKGISVQVLLETIASALMHAYREYKDAPPAPNTQARVDIDIATGAVA 60

Query: 57  VIAREVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVA 116
           VI  E+DD+GNV+ E DDTP  F RI     R  +++R R+AE  + Y  +S  EG +V+
Sbjct: 61  VIISELDDEGNVVQEHDDTPANFERIGTVAVRDAIVKRLREAETRQAYDAYSEYEGRVVS 120

Query: 117 GVIQRDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGARE 176
           GV+Q D  AN RG+VVV +G+E    +G++  AEQ+ GE  +HG+R++ +VVGV   +  
Sbjct: 121 GVVQADIHANERGIVVVHLGTEADGQDGILLPAEQIPGEQLKHGDRVKSFVVGVNHNSHS 180

Query: 177 PLITLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACI 236
             I LSRTHP LVR+LF LE+PE+ADGSVEIVS+AREAGHRSK+AV +RV GLNAKGACI
Sbjct: 181 LSINLSRTHPELVRRLFELEIPEVADGSVEIVSIAREAGHRSKVAVRARVKGLNAKGACI 240

Query: 237 GPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPD 296
           GP GQRV N+M EL+GEKIDIIDY ++PA +V NAL+P+KVV V +ID TA+ ARV VP 
Sbjct: 241 GPRGQRVTNIMKELNGEKIDIIDYSDNPAEYVGNALAPSKVVDVEIIDATAQTARVTVPH 300

Query: 297 FQLSLAIGKEGQNARLAARLTGWRIDIRGDS 327
           +QLSLAIGKEGQNARLAARLTGW+IDIR D+
Sbjct: 301 YQLSLAIGKEGQNARLAARLTGWKIDIRSDA 331


  Database: Amellifera_nr
    Posted date:  Jan 15, 2010  5:10 AM
  Number of letters in database: 3,808,957,724
  Number of sequences in database:  11,153,314
  
Lambda     K      H
   0.317    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11153314
Number of Hits to DB: 2,325,065,872
Number of extensions: 90992891
Number of successful extensions: 253535
Number of sequences better than 10.0: 1861
Number of HSP's gapped: 250647
Number of HSP's successfully gapped: 1864
Length of query: 347
Length of database: 3,808,957,724
Length adjustment: 138
Effective length of query: 209
Effective length of database: 2,269,800,392
Effective search space: 474388281928
Effective search space used: 474388281928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)