BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ML1616c
         (179 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,153,314 sequences; 3,808,957,724 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

sp|O33016|RIMM_MYCLE Tax_Id=1769 (rimM)RecName: Full=Ribosome ma...   355   1e-96
sp|B8ZRW7|RIMM_MYCLB Tax_Id=561304 (rimM)RecName: Full=Ribosome ...   355   1e-96
sp|B2HJL4|RIMM_MYCMM Tax_Id=216594 (rimM)RecName: Full=Ribosome ...   263   6e-69
sp|A0PQ65|RIMM_MYCUA Tax_Id=362242 (rimM)RecName: Full=Ribosome ...   261   2e-68
sp|Q73VN8|RIMM_MYCPA Tax_Id=1770 (rimM)RecName: Full=Ribosome ma...   259   7e-68
sp|A0QJ46|RIMM_MYCA1 Tax_Id=243243 (rimM)RecName: Full=Ribosome ...   258   2e-67
sp|P66653|RIMM_MYCTU Tax_Id=1773 (rimM)RecName: Full=Ribosome ma...   241   3e-62
sp|A5U6R2|RIMM_MYCTA Tax_Id=419947 (rimM)RecName: Full=Ribosome ...   241   3e-62
sp|C1AG22|RIMM_MYCBT Tax_Id=561275 (rimM)RecName: Full=Ribosome ...   241   3e-62
sp|A1KMQ1|RIMM_MYCBP Tax_Id=410289 (rimM)RecName: Full=Ribosome ...   241   3e-62
sp|P66654|RIMM_MYCBO Tax_Id=1765 (rimM)RecName: Full=Ribosome ma...   241   3e-62
tr|C6DWE7|C6DWE7_MYCTK Tax_Id=478434 SubName: Full=16S rRNA proc...   241   3e-62
tr|A5WRF9|A5WRF9_MYCTF Tax_Id=336982 SubName: Full=16S rRNA proc...   241   3e-62
tr|A4KKH0|A4KKH0_MYCTU Tax_Id=395095 SubName: Full=16S rRNA proc...   241   3e-62
tr|A2VLN6|A2VLN6_MYCTU Tax_Id=348776 SubName: Full=16S rRNA proc...   241   3e-62
sp|Q1BAK8|RIMM_MYCSS Tax_Id=164756 (rimM)RecName: Full=Ribosome ...   228   2e-58
sp|A1UEF4|RIMM_MYCSK Tax_Id=189918 (rimM)RecName: Full=Ribosome ...   228   2e-58
sp|A3PXV8|RIMM_MYCSJ Tax_Id=164757 (rimM)RecName: Full=Ribosome ...   228   2e-58
sp|A4TE78|RIMM_MYCGI Tax_Id=350054 (rimM)RecName: Full=Ribosome ...   219   1e-55
sp|B1MDI4|RIMM_MYCA9 Tax_Id=561007 (rimM)RecName: Full=Ribosome ...   218   2e-55
sp|A1T754|RIMM_MYCVP Tax_Id=350058 (rimM)RecName: Full=Ribosome ...   216   6e-55
sp|A0QV39|RIMM_MYCS2 Tax_Id=246196 (rimM)RecName: Full=Ribosome ...   216   1e-54
sp|Q5YS37|RIMM_NOCFA Tax_Id=37329 (rimM)RecName: Full=Ribosome m...   205   2e-51
sp|Q0S2C6|RIMM_RHOSR Tax_Id=101510 (rimM)RecName: Full=Ribosome ...   201   3e-50
sp|C1B2R9|RIMM_RHOOB Tax_Id=632772 (rimM)RecName: Full=Ribosome ...   199   1e-49
sp|C0ZXR9|RIMM_RHOE4 Tax_Id=234621 (rimM)RecName: Full=Ribosome ...   198   2e-49
tr|C3JLT7|C3JLT7_RHOER Tax_Id=596309 (rimM)SubName: Full=16S rRN...   198   2e-49
tr|C2ANN1|C2ANN1_TSUPA Tax_Id=521096 SubName: Full=16S rRNA proc...   198   2e-49
tr|D0LAM4|D0LAM4_9ACTO Tax_Id=526226 SubName: Full=16S rRNA proc...   178   3e-43
tr|C7MY86|C7MY86_SACVD Tax_Id=471857 SubName: Full=16S rRNA proc...   168   2e-40
sp|A4FME9|RIMM_SACEN Tax_Id=405948 (rimM)RecName: Full=Ribosome ...   166   1e-39
tr|C1YHQ2|C1YHQ2_NOCDA Tax_Id=446468 SubName: Full=16S rRNA proc...   164   4e-39
tr|C6WEV7|C6WEV7_ACTMD Tax_Id=446462 SubName: Full=16S rRNA proc...   157   5e-37
tr|C4E261|C4E261_STRRS Tax_Id=479432 SubName: Full=16S rRNA proc...   153   9e-36
tr|C2AAE7|C2AAE7_THECU Tax_Id=471852 SubName: Full=16S rRNA proc...   152   1e-35
sp|Q8NNX5|RIMM_CORGL Tax_Id=1718 (rimM)RecName: Full=Ribosome ma...   152   2e-35
sp|A4QFB9|RIMM_CORGB Tax_Id=340322 (rimM)RecName: Full=Ribosome ...   149   1e-34
sp|Q8FP33|RIMM_COREF Tax_Id=152794 (rimM)RecName: Full=Ribosome ...   149   2e-34
tr|C8NPR2|C8NPR2_COREF Tax_Id=196164 (rimM)SubName: Full=16S rRN...   149   2e-34
tr|C1UIJ6|C1UIJ6_9ACTO Tax_Id=526225 SubName: Full=16S rRNA proc...   148   2e-34
tr|C4RC83|C4RC83_9ACTO Tax_Id=219305 SubName: Full=Ribosome matu...   145   2e-33
sp|Q47S65|RIMM_THEFY Tax_Id=269800 (rimM)RecName: Full=Ribosome ...   140   4e-32
tr|C6RAN1|C6RAN1_9CORY Tax_Id=553206 (rimM)SubName: Full=16S rRN...   138   2e-31
tr|C2BNS9|C2BNS9_9CORY Tax_Id=525264 (rimM)SubName: Full=16S rRN...   138   2e-31
tr|C2CNR6|C2CNR6_CORST Tax_Id=525268 (rimM)SubName: Full=16S rRN...   138   3e-31
sp|A4X4H7|RIMM_SALTO Tax_Id=369723 (rimM)RecName: Full=Ribosome ...   137   5e-31
tr|C8XBW3|C8XBW3_NAKMY Tax_Id=479431 SubName: Full=16S rRNA proc...   137   5e-31
sp|Q6NGI4|RIMM_CORDI Tax_Id=1717 (rimM)RecName: Full=Ribosome ma...   135   2e-30
tr|B5HFI8|B5HFI8_STRPR Tax_Id=457429 SubName: Full=16S rRNA proc...   134   4e-30
tr|C5VCY3|C5VCY3_9CORY Tax_Id=553207 (rimM)SubName: Full=16S rRN...   134   5e-30

>sp|O33016|RIMM_MYCLE Tax_Id=1769 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium leprae]
          Length = 179

 Score =  355 bits (911), Expect = 1e-96
 Identities = 178/179 (99%), Positives = 179/179 (100%)

Query: 1   VHAHGALLELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTV 60
           +HAHGALLELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTV
Sbjct: 1   MHAHGALLELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTV 60

Query: 61  VYAREHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTM 120
           VYAREHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTM
Sbjct: 61  VYAREHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTM 120

Query: 121 MGRDVGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           MGRDVGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL
Sbjct: 121 MGRDVGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179


>sp|B8ZRW7|RIMM_MYCLB Tax_Id=561304 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium leprae]
          Length = 179

 Score =  355 bits (911), Expect = 1e-96
 Identities = 178/179 (99%), Positives = 179/179 (100%)

Query: 1   VHAHGALLELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTV 60
           +HAHGALLELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTV
Sbjct: 1   MHAHGALLELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTV 60

Query: 61  VYAREHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTM 120
           VYAREHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTM
Sbjct: 61  VYAREHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTM 120

Query: 121 MGRDVGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           MGRDVGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL
Sbjct: 121 MGRDVGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179


>sp|B2HJL4|RIMM_MYCMM Tax_Id=216594 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium marinum]
          Length = 174

 Score =  263 bits (672), Expect = 6e-69
 Identities = 136/172 (79%), Positives = 144/172 (83%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +EL IGRVVKAHGI GEVVVEIRTD+P  RF PG  LRAK    GG  R Y +   REHG
Sbjct: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
           ARLLVRLAGV+DRD AD LRGSLFVIDS DLPPIDEPDTYYDHQLEGL+VRT  G+DVGV
Sbjct: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120

Query: 128 VAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VAEVLHT AGELLAV+CDSGEVLVPFVGAIV  VSLDD I+EIDPP GLLDL
Sbjct: 121 VAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172


>sp|A0PQ65|RIMM_MYCUA Tax_Id=362242 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium ulcerans]
          Length = 174

 Score =  261 bits (668), Expect = 2e-68
 Identities = 135/172 (78%), Positives = 144/172 (83%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +EL IGRVVKAHGI GEVVVEIRTD+P  RF PG  LRAK    GG  R Y +   REHG
Sbjct: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
           ARLLVRLAGV+DRD AD LRGSLFVIDS DLPPI+EPDTYYDHQLEGL+VRT  G+DVGV
Sbjct: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIEEPDTYYDHQLEGLRVRTTAGQDVGV 120

Query: 128 VAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VAEVLHT AGELLAV+CDSGEVLVPFVGAIV  VSLDD I+EIDPP GLLDL
Sbjct: 121 VAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172


>sp|Q73VN8|RIMM_MYCPA Tax_Id=1770 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium paratuberculosis]
          Length = 175

 Score =  259 bits (663), Expect = 7e-68
 Identities = 136/176 (77%), Positives = 148/176 (84%), Gaps = 5/176 (2%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +ELT+GRVVKAHGI GE+VVEIRTDDPA+RF PGN LRAK   RGGPER   +  AREHG
Sbjct: 1   MELTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKP-SRGGPERSCVIESAREHG 59

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLLVRLAGV+DRDAADALRG+LFV+DS +LP IDEPDTYYDHQLEGLQVRT  GR VG 
Sbjct: 60  GRLLVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGRRVGA 119

Query: 128 VAEVLHTAAGELLAVRCDSG----EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VAEVLHTAAGELLAVR D+     EVLVPFV AIV  VSLDDG++EIDPP GLLDL
Sbjct: 120 VAEVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLDDGLIEIDPPDGLLDL 175


>sp|A0QJ46|RIMM_MYCA1 Tax_Id=243243 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium avium]
          Length = 175

 Score =  258 bits (659), Expect = 2e-67
 Identities = 135/176 (76%), Positives = 148/176 (84%), Gaps = 5/176 (2%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +ELT+GRVVKAHGI GE+VVEIRTDDPA+RF PGN LRAK   RGGPER   +  AREHG
Sbjct: 1   MELTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKP-SRGGPERSCVIESAREHG 59

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLLVRLAGV+DRDAADALRG+LFV+DS +LP IDEPDTYYDHQLEGLQVRT  G+ VG 
Sbjct: 60  GRLLVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGQRVGA 119

Query: 128 VAEVLHTAAGELLAVRCDSG----EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VAEVLHTAAGELLAVR D+     EVLVPFV AIV  VSLDDG++EIDPP GLLDL
Sbjct: 120 VAEVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLDDGLIEIDPPDGLLDL 175


>sp|P66653|RIMM_MYCTU Tax_Id=1773 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium tuberculosis]
          Length = 176

 Score =  241 bits (614), Expect = 3e-62
 Identities = 128/175 (73%), Positives = 140/175 (80%), Gaps = 3/175 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERR---YTVVYAR 64
           +EL +GRVVK+HG+ GEVVVEIRTDDPA RF PG  LRAK    GG E     Y +   R
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 65  EHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRD 124
           +HG RLLVRLAGV+DRDAADALRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G  
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 125 VGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VGVV EV+HTAAGELLAV+ DS EVLVPFV AIV  VSLDDGIVEIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>sp|A5U6R2|RIMM_MYCTA Tax_Id=419947 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium tuberculosis]
          Length = 176

 Score =  241 bits (614), Expect = 3e-62
 Identities = 128/175 (73%), Positives = 140/175 (80%), Gaps = 3/175 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERR---YTVVYAR 64
           +EL +GRVVK+HG+ GEVVVEIRTDDPA RF PG  LRAK    GG E     Y +   R
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 65  EHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRD 124
           +HG RLLVRLAGV+DRDAADALRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G  
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 125 VGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VGVV EV+HTAAGELLAV+ DS EVLVPFV AIV  VSLDDGIVEIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>sp|C1AG22|RIMM_MYCBT Tax_Id=561275 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium bovis]
          Length = 176

 Score =  241 bits (614), Expect = 3e-62
 Identities = 128/175 (73%), Positives = 140/175 (80%), Gaps = 3/175 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERR---YTVVYAR 64
           +EL +GRVVK+HG+ GEVVVEIRTDDPA RF PG  LRAK    GG E     Y +   R
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 65  EHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRD 124
           +HG RLLVRLAGV+DRDAADALRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G  
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 125 VGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VGVV EV+HTAAGELLAV+ DS EVLVPFV AIV  VSLDDGIVEIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>sp|A1KMQ1|RIMM_MYCBP Tax_Id=410289 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium bovis]
          Length = 176

 Score =  241 bits (614), Expect = 3e-62
 Identities = 128/175 (73%), Positives = 140/175 (80%), Gaps = 3/175 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERR---YTVVYAR 64
           +EL +GRVVK+HG+ GEVVVEIRTDDPA RF PG  LRAK    GG E     Y +   R
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 65  EHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRD 124
           +HG RLLVRLAGV+DRDAADALRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G  
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 125 VGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VGVV EV+HTAAGELLAV+ DS EVLVPFV AIV  VSLDDGIVEIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>sp|P66654|RIMM_MYCBO Tax_Id=1765 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium bovis]
          Length = 176

 Score =  241 bits (614), Expect = 3e-62
 Identities = 128/175 (73%), Positives = 140/175 (80%), Gaps = 3/175 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERR---YTVVYAR 64
           +EL +GRVVK+HG+ GEVVVEIRTDDPA RF PG  LRAK    GG E     Y +   R
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 65  EHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRD 124
           +HG RLLVRLAGV+DRDAADALRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G  
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 125 VGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VGVV EV+HTAAGELLAV+ DS EVLVPFV AIV  VSLDDGIVEIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|C6DWE7|C6DWE7_MYCTK Tax_Id=478434 SubName: Full=16S rRNA
           processing protein rimM;[Mycobacterium tuberculosis]
          Length = 176

 Score =  241 bits (614), Expect = 3e-62
 Identities = 128/175 (73%), Positives = 140/175 (80%), Gaps = 3/175 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERR---YTVVYAR 64
           +EL +GRVVK+HG+ GEVVVEIRTDDPA RF PG  LRAK    GG E     Y +   R
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 65  EHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRD 124
           +HG RLLVRLAGV+DRDAADALRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G  
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 125 VGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VGVV EV+HTAAGELLAV+ DS EVLVPFV AIV  VSLDDGIVEIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|A5WRF9|A5WRF9_MYCTF Tax_Id=336982 SubName: Full=16S rRNA
           processing protein rimM;[Mycobacterium tuberculosis]
          Length = 176

 Score =  241 bits (614), Expect = 3e-62
 Identities = 128/175 (73%), Positives = 140/175 (80%), Gaps = 3/175 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERR---YTVVYAR 64
           +EL +GRVVK+HG+ GEVVVEIRTDDPA RF PG  LRAK    GG E     Y +   R
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 65  EHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRD 124
           +HG RLLVRLAGV+DRDAADALRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G  
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 125 VGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VGVV EV+HTAAGELLAV+ DS EVLVPFV AIV  VSLDDGIVEIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|A4KKH0|A4KKH0_MYCTU Tax_Id=395095 SubName: Full=16S rRNA
           processing protein rimM;[Mycobacterium tuberculosis str.
           Haarlem]
          Length = 176

 Score =  241 bits (614), Expect = 3e-62
 Identities = 128/175 (73%), Positives = 140/175 (80%), Gaps = 3/175 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERR---YTVVYAR 64
           +EL +GRVVK+HG+ GEVVVEIRTDDPA RF PG  LRAK    GG E     Y +   R
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 65  EHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRD 124
           +HG RLLVRLAGV+DRDAADALRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G  
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 125 VGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VGVV EV+HTAAGELLAV+ DS EVLVPFV AIV  VSLDDGIVEIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|A2VLN6|A2VLN6_MYCTU Tax_Id=348776 SubName: Full=16S rRNA
           processing protein rimM;[Mycobacterium tuberculosis C]
          Length = 176

 Score =  241 bits (614), Expect = 3e-62
 Identities = 128/175 (73%), Positives = 140/175 (80%), Gaps = 3/175 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERR---YTVVYAR 64
           +EL +GRVVK+HG+ GEVVVEIRTDDPA RF PG  LRAK    GG E     Y +   R
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 65  EHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRD 124
           +HG RLLVRLAGV+DRDAADALRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G  
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 125 VGVVAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VGVV EV+HTAAGELLAV+ DS EVLVPFV AIV  VSLDDGIVEIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>sp|Q1BAK8|RIMM_MYCSS Tax_Id=164756 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium sp.]
          Length = 173

 Score =  228 bits (581), Expect = 2e-58
 Identities = 118/173 (68%), Positives = 139/173 (80%), Gaps = 2/173 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           ++L IGRV KAHG+ GE+VVE+RTDDP +RF PG  LR +  PRGG ER + V   R HG
Sbjct: 1   MDLVIGRVAKAHGVTGELVVEVRTDDPDARFVPGARLRGRA-PRGGAERAFVVESVRPHG 59

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLL+RL GV+DR AADALRG++F++DS DLPPI+EPD YYDHQLEGL VRT+ G DVG 
Sbjct: 60  GRLLLRLDGVADRTAADALRGTVFLVDSADLPPIEEPDEYYDHQLEGLLVRTVDGVDVGT 119

Query: 128 VAEVLHTAAGELLAVRCDSG-EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VAEVLHTAAGELL+V+   G E+LVPFV AIV  VSL DG+VEIDPP+GLLDL
Sbjct: 120 VAEVLHTAAGELLSVKTPEGAEILVPFVTAIVPRVSLADGLVEIDPPEGLLDL 172


>sp|A1UEF4|RIMM_MYCSK Tax_Id=189918 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium sp.]
          Length = 173

 Score =  228 bits (581), Expect = 2e-58
 Identities = 118/173 (68%), Positives = 139/173 (80%), Gaps = 2/173 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           ++L IGRV KAHG+ GE+VVE+RTDDP +RF PG  LR +  PRGG ER + V   R HG
Sbjct: 1   MDLVIGRVAKAHGVTGELVVEVRTDDPDARFVPGARLRGRA-PRGGAERAFVVESVRPHG 59

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLL+RL GV+DR AADALRG++F++DS DLPPI+EPD YYDHQLEGL VRT+ G DVG 
Sbjct: 60  GRLLLRLDGVADRTAADALRGTVFLVDSADLPPIEEPDEYYDHQLEGLLVRTVDGVDVGT 119

Query: 128 VAEVLHTAAGELLAVRCDSG-EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VAEVLHTAAGELL+V+   G E+LVPFV AIV  VSL DG+VEIDPP+GLLDL
Sbjct: 120 VAEVLHTAAGELLSVKTPEGAEILVPFVTAIVPRVSLADGLVEIDPPEGLLDL 172


>sp|A3PXV8|RIMM_MYCSJ Tax_Id=164757 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium sp.]
          Length = 173

 Score =  228 bits (581), Expect = 2e-58
 Identities = 118/173 (68%), Positives = 139/173 (80%), Gaps = 2/173 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           ++L IGRV KAHG+ GE+VVE+RTDDP +RF PG  LR +  PRGG ER + V   R HG
Sbjct: 1   MDLVIGRVAKAHGVTGELVVEVRTDDPDARFVPGARLRGRA-PRGGAERAFVVESVRPHG 59

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLL+RL GV+DR AADALRG++F++DS DLPPI+EPD YYDHQLEGL VRT+ G DVG 
Sbjct: 60  GRLLLRLDGVADRTAADALRGTVFLVDSADLPPIEEPDEYYDHQLEGLLVRTVDGVDVGT 119

Query: 128 VAEVLHTAAGELLAVRCDSG-EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VAEVLHTAAGELL+V+   G E+LVPFV AIV  VSL DG+VEIDPP+GLLDL
Sbjct: 120 VAEVLHTAAGELLSVKTPEGAEILVPFVTAIVPRVSLADGLVEIDPPEGLLDL 172


>sp|A4TE78|RIMM_MYCGI Tax_Id=350054 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium gilvum]
          Length = 173

 Score =  219 bits (558), Expect = 1e-55
 Identities = 112/173 (64%), Positives = 133/173 (76%), Gaps = 2/173 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           ++L +GRV KAHG+ GE+ VE+RTDDP  RF  G +LR +  PRGG ER Y +   R HG
Sbjct: 1   MDLVVGRVAKAHGVTGELTVEVRTDDPQGRFVRGAVLRGRP-PRGGAEREYVIESVRTHG 59

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLLVR  GV+DRDAADALRG++F++DS DLPPI++PD +YDHQLEGL V T  G +VG 
Sbjct: 60  DRLLVRFDGVADRDAADALRGTVFLVDSADLPPIEDPDEFYDHQLEGLTVITTSGGEVGK 119

Query: 128 VAEVLHTAAGELLAVR-CDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VAEVLHTAAGELLAVR  D  EVLVPFV AIV  VSLDD ++ IDPP GLL+L
Sbjct: 120 VAEVLHTAAGELLAVRTADDTEVLVPFVSAIVLSVSLDDQLITIDPPDGLLEL 172


>sp|B1MDI4|RIMM_MYCA9 Tax_Id=561007 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium abscessus]
          Length = 173

 Score =  218 bits (555), Expect = 2e-55
 Identities = 107/173 (61%), Positives = 135/173 (78%), Gaps = 2/173 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +EL +GR+ +AHG+ GE+ VE+RTDDP  RF  G++L  +  PRGG  RR+TV   REH 
Sbjct: 1   MELVVGRIARAHGVTGELSVEVRTDDPDERFAVGSVLTGR-LPRGGGSRRFTVESVREHS 59

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLL+R AGVSDRDAADALRG+LF++D+ DLPPI++PD +YDHQLEGL VRT+ G  VG 
Sbjct: 60  GRLLIRFAGVSDRDAADALRGTLFMVDTTDLPPIEDPDEFYDHQLEGLAVRTLDGAAVGT 119

Query: 128 VAEVLHTAAGELLAVR-CDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           V+EVLHT  GELL+VR  +  E+LVPFV AIV  +SL D ++EIDPP+GLLDL
Sbjct: 120 VSEVLHTPGGELLSVRGSERREILVPFVSAIVTSISLADKVIEIDPPEGLLDL 172


>sp|A1T754|RIMM_MYCVP Tax_Id=350058 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium vanbaalenii]
          Length = 172

 Score =  216 bits (551), Expect = 6e-55
 Identities = 109/173 (63%), Positives = 133/173 (76%), Gaps = 2/173 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           ++L +GRVVKAHG+ GE+ V++RTDDP  RF  G +LR +   RGG ER + +   R HG
Sbjct: 1   MDLVVGRVVKAHGVTGELAVDVRTDDPEGRFVAGAVLRGRP-ARGGAEREFVIESVRSHG 59

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            R+L+RL GV DRDAADALRG+LF++DS +LPPI++PD +YDHQLEG+ V T  G+ VG 
Sbjct: 60  DRMLIRLQGVGDRDAADALRGTLFLVDSAELPPIEDPDEFYDHQLEGMAVSTTGGQPVGT 119

Query: 128 VAEVLHTAAGELLAVR-CDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VAEVLHTAAGELLAVR  D  EVLVPFV AIV  VSL D  +EIDPP+GLLDL
Sbjct: 120 VAEVLHTAAGELLAVRDPDGAEVLVPFVSAIVVSVSLADNAIEIDPPEGLLDL 172


>sp|A0QV39|RIMM_MYCS2 Tax_Id=246196 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium smegmatis]
          Length = 173

 Score =  216 bits (549), Expect = 1e-54
 Identities = 108/174 (62%), Positives = 135/174 (77%), Gaps = 4/174 (2%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           ++L +GRVVKAHGI GEVVVEIRTDDP +RF PG +LR +  PR G ER YT+   R HG
Sbjct: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGR--PRSGAEREYTIESVRAHG 58

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLLVRLAGV+DR+ AD LRG++F++D+ +LP ID+PD +YDH+LEG++V T+    VG 
Sbjct: 59  GRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGK 118

Query: 128 VAEVLHTAAGELLAVRCDSG--EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VAEVLHTA GE+LAV+ D G  E+LVPFVGAIV  VS  +  + IDPP+GLLDL
Sbjct: 119 VAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172


>sp|Q5YS37|RIMM_NOCFA Tax_Id=37329 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Nocardia farcinica]
          Length = 174

 Score =  205 bits (521), Expect = 2e-51
 Identities = 104/173 (60%), Positives = 129/173 (74%), Gaps = 3/173 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +EL +GRV K+HG+ GE+VVE+RTDDP +RF  G +LR +  PR    R +TV  AREH 
Sbjct: 1   MELVVGRVAKSHGVRGELVVEVRTDDPDARFAEGTVLRGR-LPRSTEVREFTVESAREHS 59

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLLV LAGV DR AADALRG+LFV+DS +LPP D+PD +YDH+LEGL VR   G  +G 
Sbjct: 60  GRLLVSLAGVDDRSAADALRGTLFVVDSAELPPSDDPDEFYDHELEGLSVRDTAGAVLGT 119

Query: 128 VAEVLHTAAGELLAVRC--DSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLD 178
           V EVLH+AAGELL++R   D  E+L+PFV AIV  VS+ +G V IDPP+GLLD
Sbjct: 120 VTEVLHSAAGELLSMRAAEDGREILIPFVTAIVPTVSVAEGYVVIDPPEGLLD 172


>sp|Q0S2C6|RIMM_RHOSR Tax_Id=101510 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Rhodococcus sp.]
          Length = 183

 Score =  201 bits (511), Expect = 3e-50
 Identities = 106/174 (60%), Positives = 128/174 (73%), Gaps = 4/174 (2%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +EL +GRV K+HGI GE+VVE+RTD+P  RF  G +LR    PR      YTV  AR+H 
Sbjct: 1   MELVVGRVAKSHGIKGEIVVEVRTDEPEDRFAVGAVLRGHK-PREQTVSTYTVEAARDHS 59

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLL+RL GVSDR AADALRG+LFVIDS +L P D+PD +YDH+LEGL VR   G +VG 
Sbjct: 60  GRLLLRLEGVSDRTAADALRGTLFVIDSAELEPSDDPDEFYDHELEGLSVRLADGTEVGT 119

Query: 128 VAEVLHTAAGELLAVR---CDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLD 178
           V EVLH+AAGELL++R     SGE+LVPFV AIV  VS+ DG+  IDPP+GLLD
Sbjct: 120 VIEVLHSAAGELLSIRRAGDQSGELLVPFVAAIVTSVSVADGVALIDPPEGLLD 173


>sp|C1B2R9|RIMM_RHOOB Tax_Id=632772 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Rhodococcus opacus]
          Length = 183

 Score =  199 bits (505), Expect = 1e-49
 Identities = 105/174 (60%), Positives = 127/174 (72%), Gaps = 4/174 (2%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +EL +GRV K+HGI GE+VVE+RTD+P  RF  G +LR    PR      Y V  AREH 
Sbjct: 1   MELVVGRVAKSHGIKGEIVVEVRTDEPEDRFAVGAVLRGHK-PREQTVNTYRVEAAREHS 59

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLL+RL GV DR AADALRG+LFVIDS +L P D+PD +YDH+LEGL VR   G ++G 
Sbjct: 60  GRLLLRLEGVPDRTAADALRGTLFVIDSAELVPSDDPDEFYDHELEGLSVRLADGTELGA 119

Query: 128 VAEVLHTAAGELLAVRC---DSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLD 178
           V EVLH+AAGELL++R     SGE+LVPFV AIV  VS+ DG+V IDPP+GLLD
Sbjct: 120 VIEVLHSAAGELLSIRRAGEQSGELLVPFVAAIVTSVSVADGVVVIDPPEGLLD 173


>sp|C0ZXR9|RIMM_RHOE4 Tax_Id=234621 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Rhodococcus erythropolis]
          Length = 190

 Score =  198 bits (503), Expect = 2e-49
 Identities = 103/174 (59%), Positives = 131/174 (75%), Gaps = 4/174 (2%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +EL +GRV K+HGI GE+VVE+RTD+P  RF  G++LR +  PR    + YTV  AR+H 
Sbjct: 1   MELVVGRVAKSHGIKGELVVEVRTDEPEDRFAVGSVLRGRK-PRESTLKSYTVEAARDHS 59

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLL+RL GVSDR  ADALRG+LFVIDS +L P D+PD +YDH+LEGL+V    G +VG 
Sbjct: 60  GRLLLRLEGVSDRGDADALRGTLFVIDSSELEPSDDPDEFYDHELEGLKVVLTDGTEVGS 119

Query: 128 VAEVLHTAAGELLAVRC---DSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLD 178
           V EVLH+AAGELL++R     SGE+L+PFV AIV  VS+ DG+V I+PP+GLLD
Sbjct: 120 VIEVLHSAAGELLSIRRTGETSGELLIPFVAAIVTSVSIADGVVMIEPPEGLLD 173


>tr|C3JLT7|C3JLT7_RHOER Tax_Id=596309 (rimM)SubName: Full=16S rRNA
           processing protein RimM;[Rhodococcus erythropolis SK121]
          Length = 190

 Score =  198 bits (503), Expect = 2e-49
 Identities = 103/174 (59%), Positives = 131/174 (75%), Gaps = 4/174 (2%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +EL +GRV K+HGI GE+VVE+RTD+P  RF  G++LR +  PR    + YTV  AR+H 
Sbjct: 1   MELVVGRVAKSHGIKGELVVEVRTDEPEDRFAVGSVLRGRK-PRESTLKSYTVEAARDHS 59

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLL+RL GVSDR  ADALRG+LFVIDS +L P D+PD +YDH+LEGL+V    G +VG 
Sbjct: 60  GRLLLRLEGVSDRGDADALRGTLFVIDSSELEPSDDPDEFYDHELEGLKVVLTDGAEVGS 119

Query: 128 VAEVLHTAAGELLAVRC---DSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLD 178
           V EVLH+AAGELL++R     SGE+L+PFV AIV  VS+ DG+V I+PP+GLLD
Sbjct: 120 VIEVLHSAAGELLSIRRAGETSGELLIPFVAAIVTSVSIADGVVVIEPPEGLLD 173


>tr|C2ANN1|C2ANN1_TSUPA Tax_Id=521096 SubName: Full=16S rRNA
           processing protein RimM;[Tsukamurella paurometabola DSM
           20162]
          Length = 173

 Score =  198 bits (503), Expect = 2e-49
 Identities = 100/172 (58%), Positives = 126/172 (73%), Gaps = 2/172 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +EL +GRV K+HGI GE+VV++RTD P  RF  G +L  +  PR    + YTV  +REH 
Sbjct: 1   MELVVGRVAKSHGIRGEIVVDVRTDSPELRFADGAVLTGRR-PRAKDTQTYTVAASREHS 59

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLLVRL GV+DR AAD LRG+LFVIDS D+ P D+PD +YDH+LEGL VRT  G +VGV
Sbjct: 60  GRLLVRLEGVTDRTAADELRGTLFVIDSADVQPSDDPDEFYDHELEGLAVRTADGTEVGV 119

Query: 128 VAEVLHTAAGELLAVRCDSG-EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLD 178
           +AEVLH   GELL+V+   G E+L+PFV AIV +V +  G +EIDPP+GLLD
Sbjct: 120 IAEVLHPPGGELLSVKAPDGREILIPFVTAIVPVVDVAGGFIEIDPPEGLLD 171


>tr|D0LAM4|D0LAM4_9ACTO Tax_Id=526226 SubName: Full=16S rRNA
           processing protein RimM;[Gordonia bronchialis DSM 43247]
          Length = 172

 Score =  178 bits (451), Expect = 3e-43
 Identities = 95/172 (55%), Positives = 120/172 (69%), Gaps = 4/172 (2%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           ++L +GRV K+HG+ GEVVV+IRTDDP +RF  G +LR +  P+G  +R +TV  AR H 
Sbjct: 1   MDLVVGRVAKSHGVRGEVVVDIRTDDPETRFAVGTVLRGR-MPKGAGDREFTVTAARHHA 59

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLL+ LA V+DR AAD LRG LF+IDS +  P D+PD +YDH+LEG+ V T+ G  VGV
Sbjct: 60  GRLLLSLAEVTDRGAADGLRGVLFLIDSSEAQPSDDPDEFYDHELEGVPVSTVDGVSVGV 119

Query: 128 VAEVLHTAAGELLAVRC-DSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLD 178
           V  VLH   GELL+VR  D  EVLVPFV  IV  V+ +   + IDPP GLLD
Sbjct: 120 VESVLHLPGGELLSVRTEDRREVLVPFVRQIVPTVTREQ--IVIDPPDGLLD 169


>tr|C7MY86|C7MY86_SACVD Tax_Id=471857 SubName: Full=16S rRNA
           processing protein RimM;[Saccharomonospora viridis]
          Length = 174

 Score =  168 bits (426), Expect = 2e-40
 Identities = 89/176 (50%), Positives = 114/176 (64%), Gaps = 6/176 (3%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +++ +GR+VK HGI GEV V++RTD P  RF P  +L  K   R G  R  TV   R HG
Sbjct: 1   MQVVVGRIVKPHGIRGEVAVDVRTDSPEERFAPETVLTGK--MRDGRTRPLTVAAVRPHG 58

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLLVR   V DR AA+ +RG+  +ID  +LPPID+PD +YDH+LEGL+     G  VG 
Sbjct: 59  GRLLVRFLEVPDRTAAEEIRGATLLIDVDELPPIDDPDEFYDHELEGLRAELDDGTVVGT 118

Query: 128 VAEVLHTAAGELLAVRCDSG----EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           V EV+H+  GELLAV  +      EVLVPFV AIV  V +D G + +DPP+GLLD+
Sbjct: 119 VREVVHSPGGELLAVEVEESGRRREVLVPFVAAIVPRVEVDRGRIVLDPPEGLLDV 174


>sp|A4FME9|RIMM_SACEN Tax_Id=405948 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Saccharopolyspora erythraea]
          Length = 180

 Score =  166 bits (419), Expect = 1e-39
 Identities = 88/173 (50%), Positives = 116/173 (67%), Gaps = 4/173 (2%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGG-PERRYTVVYAREH 66
           L L +GR+V+ HG+ GE+VVE+RTD P  RF PG++L  +   RG      +TV  AR H
Sbjct: 7   LTLAVGRIVRPHGVRGELVVEVRTDSPELRFAPGSVLGMRR--RGAHASENFTVAAARPH 64

Query: 67  GARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVG 126
             RLLVR  GV  R+AA+ LRG+L  + + +L   D+PD ++DHQLEGL+V    G + G
Sbjct: 65  AGRLLVRAEGVEGREAAEELRGALLTVTADELESTDDPDEFHDHQLEGLRVVFPAGEEAG 124

Query: 127 VVAEVLHTAAGELLAVRC-DSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLD 178
           VVAEV+HT AGELLAVR  D  EVLVPFV  +V  + L+ G + +DPP+GL D
Sbjct: 125 VVAEVVHTPAGELLAVRTPDDREVLVPFVSEMVPEIDLEAGRIVVDPPEGLFD 177


>tr|C1YHQ2|C1YHQ2_NOCDA Tax_Id=446468 SubName: Full=16S rRNA
           processing protein RimM;[Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 170

 Score =  164 bits (415), Expect = 4e-39
 Identities = 85/172 (49%), Positives = 113/172 (65%), Gaps = 4/172 (2%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           + L +GR+ +AHG+ G+V V++RTDDPA+RF  G++L A D    GP    TVV  R H 
Sbjct: 1   MRLVVGRIGRAHGVRGDVAVDVRTDDPAARFADGSVL-ATDPAEAGP---LTVVSTRRHS 56

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLLVR  GV+DRDAA+ LRG+  ++DS D+PP+++PD ++DH+L GL   T     VG 
Sbjct: 57  GRLLVRFEGVADRDAAEGLRGTALLVDSEDIPPLEDPDEFHDHELIGLAAVTTGAEPVGT 116

Query: 128 VAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           VA+VLH A   L+    D  EV VPFV A+V  V +  G + IDPP GLLDL
Sbjct: 117 VADVLHHAQDLLVVTTPDGAEVYVPFVAALVPEVDVAGGRIVIDPPPGLLDL 168


>tr|C6WEV7|C6WEV7_ACTMD Tax_Id=446462 SubName: Full=16S rRNA
           processing protein RimM;[Actinosynnema mirum]
          Length = 172

 Score =  157 bits (397), Expect = 5e-37
 Identities = 86/172 (50%), Positives = 108/172 (62%), Gaps = 3/172 (1%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +++ +GRV KAHGI GE+ V++RTD P +RF  G++L AK   R G  R  TV  AR H 
Sbjct: 1   MDVVVGRVAKAHGIRGELAVDVRTDSPEARFALGSVLAAK--LRDGTSRDLTVAAARYHS 58

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLLVR   V  RD A+ LRG+L +  +  LPP D+PD +YDHQLEGL      G  +G 
Sbjct: 59  GRLLVRFEEVLTRDVAELLRGTLLLGSTDALPPTDDPDEFYDHQLEGLAAELADGTRIGT 118

Query: 128 VAEVLHTAAGELLA-VRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLD 178
           V E++H   GELL  VR D  E LVPFV  IV  V +  G V +DPP+GLLD
Sbjct: 119 VKEIVHGPGGELLVLVREDGSEALVPFVRQIVPTVDVAGGRVVVDPPEGLLD 170


>tr|C4E261|C4E261_STRRS Tax_Id=479432 SubName: Full=16S rRNA
           processing protein RimM;[Streptosporangium roseum DSM
           43021]
          Length = 171

 Score =  153 bits (386), Expect = 9e-36
 Identities = 85/171 (49%), Positives = 109/171 (63%), Gaps = 5/171 (2%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           ++L IGR+ + HG+ G+V VE+RTDDP  RF PG  + A D    GP     +   R H 
Sbjct: 1   MQLVIGRIGRPHGLRGDVSVEVRTDDPERRFAPGTAV-ATDPASAGP---LVIESRRWHS 56

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
             LLVR  GV+DR+ A+ LRG+  VIDS D+PP D+PD +YDHQL GL V T  G  VG 
Sbjct: 57  GVLLVRFEGVNDRNRAEDLRGTTLVIDSADIPPSDDPDEFYDHQLIGLAVLTPDGERVGE 116

Query: 128 VAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLD 178
           V++VLH    +LL VR    EV VPFV A+V +V LD G++ +D P GLLD
Sbjct: 117 VSDVLHHGQ-DLLVVRRGGAEVYVPFVKALVPVVDLDKGVLVVDGPAGLLD 166


>tr|C2AAE7|C2AAE7_THECU Tax_Id=471852 SubName: Full=16S rRNA
           processing protein RimM;[Thermomonospora curvata DSM
           43183]
          Length = 167

 Score =  152 bits (384), Expect = 1e-35
 Identities = 82/169 (48%), Positives = 108/169 (63%), Gaps = 4/169 (2%)

Query: 10  LTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHGAR 69
           + +GR+ + HG+ GEV V++RTDDP +RF PG +L   D P  GP    TV  AR H  R
Sbjct: 1   MVVGRIGRPHGVRGEVTVDVRTDDPDARFAPGAVLDT-DPPHLGP---LTVERARWHVGR 56

Query: 70  LLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGVVA 129
           LL+R  GV DR AA+ LRG+  V+D+ DLPP+++PD ++DH+L GL   T  G  VG V 
Sbjct: 57  LLLRFTGVDDRTAAEKLRGTWLVVDTGDLPPLEDPDEFHDHELIGLTAVTTDGTPVGTVR 116

Query: 130 EVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLD 178
           ++LH A   L+  R   GE LVPFV A+V  V +  G + IDPP GLLD
Sbjct: 117 DILHYAQDLLVIRRETGGEALVPFVAALVPEVDVAGGRIVIDPPPGLLD 165


>sp|Q8NNX5|RIMM_CORGL Tax_Id=1718 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Corynebacterium glutamicum]
          Length = 171

 Score =  152 bits (383), Expect = 2e-35
 Identities = 90/172 (52%), Positives = 111/172 (64%), Gaps = 7/172 (4%)

Query: 9   ELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHGA 68
           EL IG+VVK+HGI GEVVVE+ TDDP  RF  G +L  K   + G E   T+  AR H  
Sbjct: 6   ELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGK---QAGKEHSLTIDAARMHQG 62

Query: 69  RLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGVV 128
           RLLV+ A V DR AAD+LRG+ F   +  L   D+ D +YDH+LEGL+V    G D+G V
Sbjct: 63  RLLVKFAEVPDRTAADSLRGTRFF--AAPLEDEDDEDGFYDHELEGLRV-IHEGEDIGEV 119

Query: 129 AEVLHTAAGELLAVRCDSG-EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
             V+H  AGE+L VR  SG E L+PFV AIV  V L++G   I PP+GLLDL
Sbjct: 120 TGVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTATITPPEGLLDL 171


>sp|A4QFB9|RIMM_CORGB Tax_Id=340322 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Corynebacterium glutamicum]
          Length = 171

 Score =  149 bits (377), Expect = 1e-34
 Identities = 89/172 (51%), Positives = 110/172 (63%), Gaps = 7/172 (4%)

Query: 9   ELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHGA 68
           EL IG+VVK+HGI GEVVVE+ TDDP  RF  G +L  K   + G E   T+  AR H  
Sbjct: 6   ELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGK---QAGKEHSLTIDAARMHQG 62

Query: 69  RLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGVV 128
           RLLV+ A V DR AAD+LRG+ F   +  L   D+ D +YDH+LE L+V    G D+G V
Sbjct: 63  RLLVKFAEVPDRTAADSLRGTRFF--AAPLEDEDDEDGFYDHELESLRV-IHEGEDIGEV 119

Query: 129 AEVLHTAAGELLAVRCDSG-EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
             V+H  AGE+L VR  SG E L+PFV AIV  V L++G   I PP+GLLDL
Sbjct: 120 TGVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTATITPPEGLLDL 171


>sp|Q8FP33|RIMM_COREF Tax_Id=152794 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Corynebacterium efficiens]
          Length = 169

 Score =  149 bits (375), Expect = 2e-34
 Identities = 85/172 (49%), Positives = 110/172 (63%), Gaps = 7/172 (4%)

Query: 9   ELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHGA 68
           EL IGRV+K+HGI GEVVVE+ TDDP  R+ PG +L  +   + G E   T+  AR H  
Sbjct: 4   ELQIGRVIKSHGIRGEVVVEVTTDDPDIRYAPGEVLHGR---QTGREHTLTIDTARAHQG 60

Query: 69  RLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGVV 128
           RLL++   + DR AAD+LRG+ F    L+    D+ + +YDH+LEGL++    G D+GVV
Sbjct: 61  RLLIKFEEIPDRTAADSLRGTRFFAPPLERE--DDEEGFYDHELEGLRI-IHDGADIGVV 117

Query: 129 AEVLHTAAGELLAVRCDSG-EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
             V+H  AGE+L V   SG EVL+PFV AIV  V L+ G   I PP GLLDL
Sbjct: 118 TGVMHGPAGEILEVELTSGKEVLIPFVHAIVPEVDLEAGTATITPPDGLLDL 169


>tr|C8NPR2|C8NPR2_COREF Tax_Id=196164 (rimM)SubName: Full=16S rRNA
           processing protein RimM;[Corynebacterium efficiens
           YS-314]
          Length = 169

 Score =  149 bits (375), Expect = 2e-34
 Identities = 85/172 (49%), Positives = 110/172 (63%), Gaps = 7/172 (4%)

Query: 9   ELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHGA 68
           EL IGRV+K+HGI GEVVVE+ TDDP  R+ PG +L  +   + G E   T+  AR H  
Sbjct: 4   ELQIGRVIKSHGIRGEVVVEVTTDDPDIRYAPGEVLHGR---QTGREHTLTIDTARAHQG 60

Query: 69  RLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGVV 128
           RLL++   + DR AAD+LRG+ F    L+    D+ + +YDH+LEGL++    G D+GVV
Sbjct: 61  RLLIKFEEIPDRTAADSLRGTRFFAPPLERE--DDEEGFYDHELEGLRI-IHDGADIGVV 117

Query: 129 AEVLHTAAGELLAVRCDSG-EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
             V+H  AGE+L V   SG EVL+PFV AIV  V L+ G   I PP GLLDL
Sbjct: 118 TGVMHGPAGEILEVELTSGKEVLIPFVHAIVPEVDLEAGTATITPPDGLLDL 169


>tr|C1UIJ6|C1UIJ6_9ACTO Tax_Id=526225 SubName: Full=16S rRNA
           processing protein RimM;[Geodermatophilus obscurus DSM
           43160]
          Length = 177

 Score =  148 bits (374), Expect = 2e-34
 Identities = 77/170 (45%), Positives = 105/170 (61%), Gaps = 4/170 (2%)

Query: 10  LTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHGAR 69
           + +GR+ + HG+ GEV VE+RTDDP  RF PG +LR +   RG      T+   R H   
Sbjct: 12  VVVGRIGRPHGVRGEVTVEVRTDDPDLRFAPGAVLRTEPADRGP----LTIAACRWHREV 67

Query: 70  LLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGVVA 129
           LL+ + GV  R+AA+ LR +   +   DLP +++PD YYDHQL GL  R   G ++G V+
Sbjct: 68  LLLAIDGVKSREAAEELRNTELHVPVADLPALEDPDVYYDHQLVGLTARLPDGTELGTVS 127

Query: 130 EVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
            V H  A  L+  R + GE+LVPFV AIV  V +  G+V +DPP+GLLDL
Sbjct: 128 AVRHEGADLLVVRRVEGGELLVPFVTAIVPTVDVPGGVVVVDPPEGLLDL 177


>tr|C4RC83|C4RC83_9ACTO Tax_Id=219305 SubName: Full=Ribosome
           maturation factor rimM;[Micromonospora sp. ATCC 39149]
          Length = 185

 Score =  145 bits (366), Expect = 2e-33
 Identities = 82/185 (44%), Positives = 110/185 (59%), Gaps = 13/185 (7%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDF------PRGGP------E 55
           + L +GR+ K HGI GEV VE+RTD+P +RF PG++L  +        P  GP       
Sbjct: 1   MRLIVGRIGKPHGIRGEVTVEVRTDEPEARFAPGSVLATEPGAVPPANPASGPGVPFRVP 60

Query: 56  RRYTVVYAREHGARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGL 115
              TV  AR H  RLLV   G+ +RD A+ALRG+L  +DS D+ P ++P+ ++DHQL GL
Sbjct: 61  AELTVESARWHQGRLLVVFDGILERDVAEALRGTLLGVDSADVAPPEDPEEFHDHQLVGL 120

Query: 116 QVRTMMGRDVGVVAEVLHTAAGELLAVRCDSGE-VLVPFVGAIVKLVSLDDGIVEIDPPK 174
            V T  G  +G V ++ H  A +LL +R   G   L+PFV AIV  V L  G + +DPP 
Sbjct: 121 AVVTPAGEHLGEVVKIDHAPASDLLVLRRPEGRTALIPFVKAIVPEVDLAGGRIVVDPPS 180

Query: 175 GLLDL 179
           GLLDL
Sbjct: 181 GLLDL 185


>sp|Q47S65|RIMM_THEFY Tax_Id=269800 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Thermobifida fusca]
          Length = 170

 Score =  140 bits (354), Expect = 4e-32
 Identities = 81/172 (47%), Positives = 102/172 (59%), Gaps = 4/172 (2%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           + L +GR+ + HG+ GEV VE+RTD P  RF  G  L   D    GP    T+   R H 
Sbjct: 1   MRLVVGRIGRPHGVKGEVTVEVRTDSPEERFVVGKALET-DPADVGP---LTITAQRWHK 56

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLLVR   V DR AA+ LRG   V+DS +LPP+D+PD ++DH+L GL+V T+ G  VG 
Sbjct: 57  DRLLVRFEEVPDRTAAEQLRGVFLVVDSAELPPLDDPDEFHDHELIGLRVETVDGEAVGE 116

Query: 128 VAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           V +VLH A   L+       EVLVPFV  +V  V    G V IDPP GLL+L
Sbjct: 117 VVDVLHHAQDMLVVSGEKGSEVLVPFVRELVPDVDTAAGRVVIDPPPGLLEL 168


>tr|C6RAN1|C6RAN1_9CORY Tax_Id=553206 (rimM)SubName: Full=16S rRNA
           processing protein RimM;[Corynebacterium
           tuberculostearicum SK141]
          Length = 165

 Score =  138 bits (348), Expect = 2e-31
 Identities = 80/173 (46%), Positives = 105/173 (60%), Gaps = 9/173 (5%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +EL IGRV+K+HG+ GEVVVE  TD+P  RF  G +L      +G  E   T+   R H 
Sbjct: 1   MELMIGRVIKSHGVKGEVVVEATTDEPEVRFAVGEVLHG---TQGKKEHTLTIKAVRSHK 57

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLLV    + DR  AD+LRG+ F    LD     + D +YDH+LEGL+V  + G ++G 
Sbjct: 58  GRLLVTFEEIKDRTVADSLRGTKFFAAPLD----SDDDGFYDHELEGLRV-LLEGEEIGE 112

Query: 128 VAEVLHTAAGELLAVRCD-SGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           V  V+H  + +LL V  D S E L+PFV AIV  V+L+ G   IDPP+GLLDL
Sbjct: 113 VTSVIHGGSQDLLEVELDNSKEALIPFVHAIVPEVNLEAGTCTIDPPEGLLDL 165


>tr|C2BNS9|C2BNS9_9CORY Tax_Id=525264 (rimM)SubName: Full=16S
           rRNA-processing protein;[Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 165

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/173 (45%), Positives = 106/173 (61%), Gaps = 9/173 (5%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +EL IGRV+K+HG+ GEVVVE  TD+P  RF  G +L      +G  E   T+   R H 
Sbjct: 1   MELMIGRVIKSHGVKGEVVVEATTDEPEVRFAVGEVLHG---TQGKKEHTLTIKAVRSHK 57

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
            RLLV    + DR  AD+LRG+ F    LD     + D +YDH+LEGL+V  + G ++G 
Sbjct: 58  GRLLVTFEEIKDRTVADSLRGTKFFAAPLD----SDDDGFYDHELEGLRV-LLEGEEIGE 112

Query: 128 VAEVLHTAAGELLAVRCDSG-EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           V  V+H  + +LL ++ D+  E L+PFV AIV  V+L+ G   IDPP+GLLDL
Sbjct: 113 VTSVIHGGSQDLLEIKLDNNKEALIPFVHAIVPEVNLEAGTCTIDPPEGLLDL 165


>tr|C2CNR6|C2CNR6_CORST Tax_Id=525268 (rimM)SubName: Full=16S
           rRNA-processing protein;[Corynebacterium striatum ATCC
           6940]
          Length = 174

 Score =  138 bits (347), Expect = 3e-31
 Identities = 82/175 (46%), Positives = 105/175 (60%), Gaps = 12/175 (6%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +EL IGRV+K+HGI GE+ VE  TD+P  RF  G +L  +   +G  E   T+   R H 
Sbjct: 9   MELMIGRVIKSHGIKGELSVEATTDEPEIRFAVGEVLHGR---QGKKEHELTIKAVRVHK 65

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDT--YYDHQLEGLQVRTMMGRDV 125
            RLL+    V DR AAD+LRG+ F       PP+D+PD   +YDH+LEGL+V    G D+
Sbjct: 66  GRLLITFEEVKDRTAADSLRGTQFF-----APPLDDPDDDGFYDHELEGLRV-IHDGNDI 119

Query: 126 GVVAEVLHTAAGELLAVRCDSG-EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           G V  + H     LL VR +SG E L+PFV  IV  V LD+G   I PP+GLLDL
Sbjct: 120 GEVTGLTHGPTQSLLEVRLESGKEALIPFVEEIVPEVDLDEGTCTITPPEGLLDL 174


>sp|A4X4H7|RIMM_SALTO Tax_Id=369723 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Salinispora tropica]
          Length = 180

 Score =  137 bits (345), Expect = 5e-31
 Identities = 82/179 (45%), Positives = 109/179 (60%), Gaps = 9/179 (5%)

Query: 10  LTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAK---DFPRGGPERRY----TVVY 62
           L +GR+ K HGI GEV VE+RTD+P +RF PG++LR +   + P      R     TV  
Sbjct: 2   LVVGRIGKPHGIRGEVTVEVRTDEPETRFAPGSVLRTEPGANVPAHPGAYRVPGELTVEA 61

Query: 63  AREHGAR-LLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMM 121
           AR H  R LLV   GV DR+ A+ALRG+L  +D  D+ P  +P+ ++DHQL GL V T  
Sbjct: 62  ARWHQGRVLLVTFEGVLDRNVAEALRGTLVGVDRADVAPPTDPEEFHDHQLVGLAVVTSA 121

Query: 122 GRDVGVVAEVLHTAAGELLAVRCDS-GEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
           G  +G +A + H  A +LL +R     +VL+PFV AIV  + L  G V +DPP GLLDL
Sbjct: 122 GERLGEIARIDHAPAADLLVLRRPGRRDVLIPFVQAIVPEIDLAGGRVVVDPPGGLLDL 180


>tr|C8XBW3|C8XBW3_NAKMY Tax_Id=479431 SubName: Full=16S rRNA
           processing protein RimM;[Nakamurella multipartita]
          Length = 167

 Score =  137 bits (345), Expect = 5e-31
 Identities = 74/170 (43%), Positives = 103/170 (60%), Gaps = 6/170 (3%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +E+ +GR+ + HG+ G+V + + TDDP +RF  G++L     P  GP    TVV  R  G
Sbjct: 1   MEVVVGRIGRPHGLRGDVTIAVNTDDPDARFAAGSVLGTD--PDRGP---LTVVTRRRSG 55

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127
             LL+R  G+ DRDAA+ALRG+   + +  LP  D+PD +YDHQL GL VR   G+D+G 
Sbjct: 56  GVLLLRFEGIEDRDAAEALRGTSLTVPAETLPESDDPDEFYDHQLIGLAVRDPSGQDLGK 115

Query: 128 VAEVLHTAAGELLAV-RCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGL 176
           V EV H  A  +L V R D  +  VPFV A+V  V L    + +DPP+G+
Sbjct: 116 VVEVWHPPASPVLLVRRPDGSDEAVPFVRALVPTVDLAQSYLVVDPPEGM 165


>sp|Q6NGI4|RIMM_CORDI Tax_Id=1717 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Corynebacterium diphtheriae]
          Length = 166

 Score =  135 bits (340), Expect = 2e-30
 Identities = 82/174 (47%), Positives = 108/174 (62%), Gaps = 10/174 (5%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           +EL IGRVVK+HGI GEV +E+ T++P  RF  G +L  +   +GG E   T+   R H 
Sbjct: 1   MELMIGRVVKSHGIRGEVAIEVTTEEPEIRFAQGEVLNGR---QGGKEHSLTIASVRPHQ 57

Query: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRD-VG 126
            RLLV+   ++DR AAD+LRG+ F    LD    D  D +YDH+LEGL V  + G + +G
Sbjct: 58  NRLLVKFKEIADRTAADSLRGTRFFAAPLD---DDVDDGFYDHELEGLAV--IHGEEKIG 112

Query: 127 VVAEVLHTAAGELLAVRCDSG-EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
            V+ V+H  A  LL V  +SG EVL+PFV  IV  V LD G   I PP+GLL+L
Sbjct: 113 EVSGVIHGPAQSLLEVTLESGKEVLIPFVHDIVPEVDLDAGTCVITPPEGLLEL 166


>tr|B5HFI8|B5HFI8_STRPR Tax_Id=457429 SubName: Full=16S rRNA
           processing protein;[Streptomyces pristinaespiralis ATCC
           25486]
          Length = 185

 Score =  134 bits (337), Expect = 4e-30
 Identities = 77/174 (44%), Positives = 107/174 (61%), Gaps = 9/174 (5%)

Query: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67
           ++L +GR+ +AHGI GEV VE+RTD+P  R  PG +L A D    GP    T+   R H 
Sbjct: 1   MQLVVGRIGRAHGIKGEVTVEVRTDEPELRLGPGAVL-ATDPATAGP---LTIETGRVHS 56

Query: 68  ARLLVRLAGVSDRDAADALRGSLFV--IDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDV 125
            RLL+R  GV DR+AA+ALR +L +  +D  +LP  +EPD YYDHQL  L V    G ++
Sbjct: 57  GRLLLRFEGVKDRNAAEALRNTLLIAEVDPEELP--EEPDEYYDHQLMDLDVVLEDGTEI 114

Query: 126 GVVAEVLHTAAGELLAV-RCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLD 178
           G + E+ H  + +L  V R D  EV++PFV  IV  + L++    I PP+GL+D
Sbjct: 115 GRITEISHLPSQDLFIVERPDGSEVMIPFVQEIVAEIDLEEQRAVITPPRGLID 168


>tr|C5VCY3|C5VCY3_9CORY Tax_Id=553207 (rimM)SubName: Full=16S rRNA
           processing protein RimM;[Corynebacterium matruchotii
           ATCC 14266]
          Length = 210

 Score =  134 bits (336), Expect = 5e-30
 Identities = 81/174 (46%), Positives = 105/174 (60%), Gaps = 7/174 (4%)

Query: 7   LLELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREH 66
           L+EL IGRV+KAHGI GEVVV+  TD+P  R+ PG +L  K   +G  E   TV +AR H
Sbjct: 43  LMELMIGRVIKAHGIRGEVVVDPTTDEPDIRYAPGTVLHGK---QGKREHTLTVAHARPH 99

Query: 67  GARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVG 126
             RLLV    V DR AA++LRG+ F  + LD+   D+ + +YDH L GL+V    G ++G
Sbjct: 100 QGRLLVTFDEVPDRTAAESLRGTQFWAEQLDID--DDEEGFYDHDLTGLRV-IHEGAEIG 156

Query: 127 VVAEVLHTAAGELLAVRCDSG-EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179
            V  V+   AG +L V    G + LVPFV  IV  V L+ G   I PP GLLD+
Sbjct: 157 TVTGVMSGPAGTILEVELAGGKQALVPFVFDIVPEVDLEAGTCTITPPDGLLDI 210


  Database: Amellifera_nr
    Posted date:  Jan 15, 2010  5:10 AM
  Number of letters in database: 3,808,957,724
  Number of sequences in database:  11,153,314
  
Lambda     K      H
   0.322    0.143    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11153314
Number of Hits to DB: 1,360,775,627
Number of extensions: 54382040
Number of successful extensions: 127933
Number of sequences better than 10.0: 1463
Number of HSP's gapped: 127389
Number of HSP's successfully gapped: 1470
Length of query: 179
Length of database: 3,808,957,724
Length adjustment: 128
Effective length of query: 51
Effective length of database: 2,381,333,532
Effective search space: 121448010132
Effective search space used: 121448010132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)