BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ML1890c (1316 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,153,314 sequences; 3,808,957,724 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P30761|RPOC_MYCLE Tax_Id=1769 (rpoC)RecName: Full=DNA-directe... 2491 0.0 sp|B8ZSC6|RPOC_MYCLB Tax_Id=561304 (rpoC)RecName: Full=DNA-direc... 2491 0.0 sp|Q73SE3|RPOC_MYCPA Tax_Id=1770 (rpoC)RecName: Full=DNA-directe... 2400 0.0 sp|A0QL48|RPOC_MYCA1 Tax_Id=243243 (rpoC)RecName: Full=DNA-direc... 2399 0.0 sp|P0A674|RPOC_MYCTU Tax_Id=1773 (rpoC)RecName: Full=DNA-directe... 2396 0.0 sp|A5U053|RPOC_MYCTA Tax_Id=419947 (rpoC)RecName: Full=DNA-direc... 2396 0.0 sp|P0A675|RPOC_MYCBO Tax_Id=1765 (rpoC)RecName: Full=DNA-directe... 2396 0.0 tr|C6DUI1|C6DUI1_MYCTK Tax_Id=478434 RecName: Full=DNA-directed ... 2396 0.0 tr|A5WK36|A5WK36_MYCTF Tax_Id=336982 RecName: Full=DNA-directed ... 2396 0.0 sp|A1KGE8|RPOC_MYCBP Tax_Id=410289 (rpoC)RecName: Full=DNA-direc... 2394 0.0 sp|C1AL01|RPOC_MYCBT Tax_Id=561275 (rpoC)RecName: Full=DNA-direc... 2392 0.0 sp|B2HSJ4|RPOC_MYCMM Tax_Id=216594 (rpoC)RecName: Full=DNA-direc... 2383 0.0 sp|A0PM25|RPOC_MYCUA Tax_Id=362242 (rpoC)RecName: Full=DNA-direc... 2377 0.0 sp|Q1BDE9|RPOC_MYCSS Tax_Id=164756 (rpoC)RecName: Full=DNA-direc... 2274 0.0 sp|A1UBJ4|RPOC_MYCSK Tax_Id=189918 (rpoC)RecName: Full=DNA-direc... 2274 0.0 sp|A3PV79|RPOC_MYCSJ Tax_Id=164757 (rpoC)RecName: Full=DNA-direc... 2274 0.0 sp|A1T4J3|RPOC_MYCVP Tax_Id=350058 (rpoC)RecName: Full=DNA-direc... 2266 0.0 sp|A0QS66|RPOC_MYCS2 Tax_Id=246196 (rpoC)RecName: Full=DNA-direc... 2256 0.0 sp|A4T1P3|RPOC_MYCGI Tax_Id=350054 (rpoC)RecName: Full=DNA-direc... 2244 0.0 sp|B1MH61|RPOC_MYCA9 Tax_Id=561007 (rpoC)RecName: Full=DNA-direc... 2231 0.0 tr|A4KEZ2|A4KEZ2_MYCTU Tax_Id=395095 RecName: Full=DNA-directed ... 2223 0.0 sp|Q5YPE1|RPOC_NOCFA Tax_Id=37329 (rpoC)RecName: Full=DNA-direct... 2222 0.0 sp|Q0SFB4|RPOC_RHOSR Tax_Id=101510 (rpoC)RecName: Full=DNA-direc... 2170 0.0 sp|C1AYV8|RPOC_RHOOB Tax_Id=632772 (rpoC)RecName: Full=DNA-direc... 2170 0.0 sp|C0ZVQ7|RPOC_RHOE4 Tax_Id=234621 (rpoC)RecName: Full=DNA-direc... 2155 0.0 tr|C3JJR1|C3JJR1_RHOER Tax_Id=596309 (rpoC)RecName: Full=DNA-dir... 2155 0.0 tr|D0L4Z5|D0L4Z5_9ACTO Tax_Id=526226 SubName: Full=DNA-directed ... 2145 0.0 tr|C2ALB8|C2ALB8_TSUPA Tax_Id=521096 RecName: Full=DNA-directed ... 2135 0.0 sp|A4FPP2|RPOC_SACEN Tax_Id=405948 (rpoC)RecName: Full=DNA-direc... 2007 0.0 tr|C7MTI8|C7MTI8_SACVD Tax_Id=471857 RecName: Full=DNA-directed ... 1976 0.0 tr|C6WN59|C6WN59_ACTMD Tax_Id=446462 RecName: Full=DNA-directed ... 1955 0.0 tr|C8XBL0|C8XBL0_NAKMY Tax_Id=479431 SubName: Full=DNA-directed ... 1888 0.0 sp|Q4JT33|RPOC_CORJK Tax_Id=306537 (rpoC)RecName: Full=DNA-direc... 1872 0.0 tr|C8RUP2|C8RUP2_CORJE Tax_Id=525262 (rpoC)SubName: Full=DNA-dir... 1863 0.0 sp|B1VES2|RPOC_CORU7 Tax_Id=504474 (rpoC)RecName: Full=DNA-direc... 1841 0.0 tr|C0U8K2|C0U8K2_9ACTO Tax_Id=526225 RecName: Full=DNA-directed ... 1830 0.0 sp|C4LL70|RPOC_CORK4 Tax_Id=645127 (rpoC)RecName: Full=DNA-direc... 1820 0.0 sp|Q0RRS9|RPOC_FRAAA Tax_Id=326424 (rpoC)RecName: Full=DNA-direc... 1819 0.0 sp|Q6NJF6|RPOC_CORDI Tax_Id=1717 (rpoC)RecName: Full=DNA-directe... 1818 0.0 tr|C8NX30|C8NX30_9CORY Tax_Id=585529 (rpoC)SubName: Full=DNA-dir... 1813 0.0 sp|A8LC63|RPOC_FRASN Tax_Id=298653 (rpoC)RecName: Full=DNA-direc... 1811 0.0 sp|Q2JFI4|RPOC_FRASC Tax_Id=106370 (rpoC)RecName: Full=DNA-direc... 1811 0.0 tr|C4RBP6|C4RBP6_9ACTO Tax_Id=219305 RecName: Full=DNA-directed ... 1807 0.0 sp|Q8NT25|RPOC_CORGL Tax_Id=1718 (rpoC)RecName: Full=DNA-directe... 1805 0.0 sp|A4QBG3|RPOC_CORGB Tax_Id=340322 (rpoC)RecName: Full=DNA-direc... 1805 0.0 tr|C0XUK4|C0XUK4_9CORY Tax_Id=525263 (rpoC)RecName: Full=DNA-dir... 1803 0.0 sp|A8M538|RPOC_SALAI Tax_Id=391037 (rpoC)RecName: Full=DNA-direc... 1802 0.0 sp|Q8FS96|RPOC_COREF Tax_Id=152794 (rpoC)RecName: Full=DNA-direc... 1802 0.0 tr|C8NSA9|C8NSA9_COREF Tax_Id=196164 (rpoC)SubName: Full=DNA-dir... 1802 0.0 sp|C3PKN2|RPOC_CORA7 Tax_Id=548476 (rpoC)RecName: Full=DNA-direc... 1798 0.0 >sp|P30761|RPOC_MYCLE Tax_Id=1769 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium leprae] Length = 1316 Score = 2491 bits (6456), Expect = 0.0 Identities = 1267/1316 (96%), Positives = 1268/1316 (96%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct: 181 LAALEAEGAKADARRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD Sbjct: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF Sbjct: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV Sbjct: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 961 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR Sbjct: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >sp|B8ZSC6|RPOC_MYCLB Tax_Id=561304 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium leprae] Length = 1316 Score = 2491 bits (6456), Expect = 0.0 Identities = 1267/1316 (96%), Positives = 1268/1316 (96%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct: 181 LAALEAEGAKADARRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD Sbjct: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF Sbjct: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV Sbjct: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 961 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR Sbjct: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >sp|Q73SE3|RPOC_MYCPA Tax_Id=1770 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium paratuberculosis] Length = 1316 Score = 2400 bits (6219), Expect = 0.0 Identities = 1213/1316 (92%), Positives = 1247/1316 (94%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT+VDEEMRHNELSTLEAEMMVERK+VEDQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RD GEREMRQ+R+RAQRELDRLEDIW+TFTKLAPKQLIVDENL Sbjct: 181 LAELEAEGAKADARRKVRDSGEREMRQIRDRAQRELDRLEDIWNTFTKLAPKQLIVDENL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESIQKL+++FDI+AEAE LR+VIRNGKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAEQLRDVIRNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT V+GD G Y Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGEYS 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PAA+DRPE+GVYSSPAEAIMAADRGVLSVRAKIKV+LTQ+RPPA+IEA FGANGW+PGD Sbjct: 601 PAAKDRPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD 660 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W+A+TTLGRV+FNELLP+GYPFVNKQMHKKVQA+IINDLAERYPMIVVAQTVDKLKDAG Sbjct: 661 AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQASIINDLAERYPMIVVAQTVDKLKDAG 720 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE Sbjct: 721 FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALR+HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRPVKSSF Sbjct: 781 ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGIVVE Sbjct: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIVVE 900 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA R PDG+LIR+ YIETSAYARTLG +AVDEAGNVIVARGEDLGDPEIDALLAAGIT V Sbjct: 901 LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVARGEDLGDPEIDALLAAGITSV 960 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 961 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEAR+PRGKAPIADVTGRVRLEDGERFYKITIVPDDG EEVVYDKL Sbjct: 1021 GEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVVYDKL 1080 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH DGSERVLSDGD+VEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFE+ENRRVVAE GEP Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 GTGINRYRNIQVQPTEEARA+AYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR Sbjct: 1261 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >sp|A0QL48|RPOC_MYCA1 Tax_Id=243243 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium avium] Length = 1316 Score = 2399 bits (6216), Expect = 0.0 Identities = 1213/1316 (92%), Positives = 1246/1316 (94%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT+VDEEMRHNELSTLEAEMMVERK+VEDQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RD GEREMRQ+R+RAQRELDRLEDIW+TFTKLAPKQLIVDENL Sbjct: 181 LAELEAEGAKADARRKVRDSGEREMRQIRDRAQRELDRLEDIWNTFTKLAPKQLIVDENL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESIQKL+++FDI+AEAE LR+VIRNGKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAEQLRDVIRNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT V+GD G YR Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGEYR 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PAA+D PE GVYSSPAEAIMAADRGVLSVRAKIKV+LTQ+RPPA+IEA FGANGW+PGD Sbjct: 601 PAAKDTPEVGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD 660 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W+A+TTLGRV+FNELLP+GYPFVNKQMHKKVQA+IINDLAERYPMIVVAQTVDKLKDAG Sbjct: 661 AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQASIINDLAERYPMIVVAQTVDKLKDAG 720 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE Sbjct: 721 FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALR+HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRPVKSSF Sbjct: 781 ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGIVVE Sbjct: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIVVE 900 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA R PDG+LIR+ YIETSAYARTLG +AVDEAGNVIVARGEDLGDPEIDALLAAGIT V Sbjct: 901 LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVARGEDLGDPEIDALLAAGITSV 960 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 961 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEAR+PRGKAPIADVTGRVRLEDGERFYKITIVPDDG EEVVYDKL Sbjct: 1021 GEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVVYDKL 1080 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH DGSERVLSDGD+VEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFE+ENRRVVAE GEP Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 GTGINRYRNIQVQPTEEARA+AYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR Sbjct: 1261 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >sp|P0A674|RPOC_MYCTU Tax_Id=1773 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium tuberculosis] Length = 1316 Score = 2396 bits (6210), Expect = 0.0 Identities = 1213/1316 (92%), Positives = 1244/1316 (94%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT+VDEEMRHNELSTLEAEM VERK+VEDQRD +LEAR Sbjct: 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RDGGEREMRQ+R+RAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct: 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESIQKL+++FDI+AEAESLR+VIRNGKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT V GDTG Y+ Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PA+ D PE+GVYSSPAEAIMAADRGVLSVRAKIKV+LTQ+RPP +IEA FG +GW+PGD Sbjct: 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W+A+TTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct: 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALR+HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRPVKSSF Sbjct: 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA R PDG+LIR+ YIETSAYARTLG +AVDEAGNVIV RG+DLGDPEIDALLAAGITQV Sbjct: 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+ Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH DGSERVLSDGD+VEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFE+ENRRVVAE GEP Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARA+AYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >sp|A5U053|RPOC_MYCTA Tax_Id=419947 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium tuberculosis] Length = 1316 Score = 2396 bits (6210), Expect = 0.0 Identities = 1213/1316 (92%), Positives = 1244/1316 (94%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT+VDEEMRHNELSTLEAEM VERK+VEDQRD +LEAR Sbjct: 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RDGGEREMRQ+R+RAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct: 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESIQKL+++FDI+AEAESLR+VIRNGKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT V GDTG Y+ Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PA+ D PE+GVYSSPAEAIMAADRGVLSVRAKIKV+LTQ+RPP +IEA FG +GW+PGD Sbjct: 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W+A+TTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct: 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALR+HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRPVKSSF Sbjct: 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA R PDG+LIR+ YIETSAYARTLG +AVDEAGNVIV RG+DLGDPEIDALLAAGITQV Sbjct: 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+ Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH DGSERVLSDGD+VEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFE+ENRRVVAE GEP Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARA+AYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >sp|P0A675|RPOC_MYCBO Tax_Id=1765 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium bovis] Length = 1316 Score = 2396 bits (6210), Expect = 0.0 Identities = 1213/1316 (92%), Positives = 1244/1316 (94%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT+VDEEMRHNELSTLEAEM VERK+VEDQRD +LEAR Sbjct: 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RDGGEREMRQ+R+RAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct: 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESIQKL+++FDI+AEAESLR+VIRNGKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT V GDTG Y+ Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PA+ D PE+GVYSSPAEAIMAADRGVLSVRAKIKV+LTQ+RPP +IEA FG +GW+PGD Sbjct: 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W+A+TTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct: 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALR+HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRPVKSSF Sbjct: 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA R PDG+LIR+ YIETSAYARTLG +AVDEAGNVIV RG+DLGDPEIDALLAAGITQV Sbjct: 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+ Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH DGSERVLSDGD+VEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFE+ENRRVVAE GEP Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARA+AYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >tr|C6DUI1|C6DUI1_MYCTK Tax_Id=478434 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium tuberculosis] Length = 1316 Score = 2396 bits (6210), Expect = 0.0 Identities = 1213/1316 (92%), Positives = 1244/1316 (94%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT+VDEEMRHNELSTLEAEM VERK+VEDQRD +LEAR Sbjct: 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RDGGEREMRQ+R+RAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct: 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESIQKL+++FDI+AEAESLR+VIRNGKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT V GDTG Y+ Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PA+ D PE+GVYSSPAEAIMAADRGVLSVRAKIKV+LTQ+RPP +IEA FG +GW+PGD Sbjct: 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W+A+TTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct: 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALR+HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRPVKSSF Sbjct: 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA R PDG+LIR+ YIETSAYARTLG +AVDEAGNVIV RG+DLGDPEIDALLAAGITQV Sbjct: 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+ Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH DGSERVLSDGD+VEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFE+ENRRVVAE GEP Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARA+AYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >tr|A5WK36|A5WK36_MYCTF Tax_Id=336982 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium tuberculosis] Length = 1316 Score = 2396 bits (6210), Expect = 0.0 Identities = 1213/1316 (92%), Positives = 1244/1316 (94%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT+VDEEMRHNELSTLEAEM VERK+VEDQRD +LEAR Sbjct: 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RDGGEREMRQ+R+RAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct: 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESIQKL+++FDI+AEAESLR+VIRNGKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT V GDTG Y+ Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PA+ D PE+GVYSSPAEAIMAADRGVLSVRAKIKV+LTQ+RPP +IEA FG +GW+PGD Sbjct: 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W+A+TTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct: 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALR+HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRPVKSSF Sbjct: 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA R PDG+LIR+ YIETSAYARTLG +AVDEAGNVIV RG+DLGDPEIDALLAAGITQV Sbjct: 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+ Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH DGSERVLSDGD+VEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFE+ENRRVVAE GEP Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARA+AYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >sp|A1KGE8|RPOC_MYCBP Tax_Id=410289 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium bovis] Length = 1316 Score = 2394 bits (6203), Expect = 0.0 Identities = 1212/1316 (92%), Positives = 1243/1316 (94%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRV FKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVPFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT+VDEEMRHNELSTLEAEM VERK+VEDQRD +LEAR Sbjct: 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RDGGEREMRQ+R+RAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct: 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESIQKL+++FDI+AEAESLR+VIRNGKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT V GDTG Y+ Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PA+ D PE+GVYSSPAEAIMAADRGVLSVRAKIKV+LTQ+RPP +IEA FG +GW+PGD Sbjct: 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W+A+TTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct: 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALR+HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRPVKSSF Sbjct: 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA R PDG+LIR+ YIETSAYARTLG +AVDEAGNVIV RG+DLGDPEIDALLAAGITQV Sbjct: 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+ Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH DGSERVLSDGD+VEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFE+ENRRVVAE GEP Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARA+AYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >sp|C1AL01|RPOC_MYCBT Tax_Id=561275 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium bovis] Length = 1316 Score = 2392 bits (6199), Expect = 0.0 Identities = 1211/1316 (92%), Positives = 1242/1316 (94%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKR FKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRAPFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT+VDEEMRHNELSTLEAEM VERK+VEDQRD +LEAR Sbjct: 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RDGGEREMRQ+R+RAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct: 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESIQKL+++FDI+AEAESLR+VIRNGKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT V GDTG Y+ Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PA+ D PE+GVYSSPAEAIMAADRGVLSVRAKIKV+LTQ+RPP +IEA FG +GW+PGD Sbjct: 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W+A+TTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct: 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALR+HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRPVKSSF Sbjct: 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA R PDG+LIR+ YIETSAYARTLG +AVDEAGNVIV RG+DLGDPEIDALLAAGITQV Sbjct: 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+ Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH DGSERVLSDGD+VEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFE+ENRRVVAE GEP Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARA+AYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >sp|B2HSJ4|RPOC_MYCMM Tax_Id=216594 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium marinum] Length = 1316 Score = 2383 bits (6177), Expect = 0.0 Identities = 1208/1316 (91%), Positives = 1241/1316 (94%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT+VD EMRHNELSTLEAEMMVERK+VEDQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RD GEREMRQLR+RAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct: 181 LAELEAEGAKADARRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YREL DRYGEYFTGAMGAESIQKL++ FDI+AEAE LR+VIRNGKGQ Sbjct: 241 YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT V+GD GAY+ Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PA +D PE+GVYSSPAEAIMAADRGVLSVRAKIKV+LTQ+RPPA+IE FG NGW+PGD Sbjct: 601 PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W A+TTLGRV+FNELLPLGY FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD+G Sbjct: 661 AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE Sbjct: 721 FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALR+HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRP+KSSF Sbjct: 781 ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGI+VE Sbjct: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA R DG+LIR+ YIETSAYARTLGA+AVDEAGNV+VARGEDLGDPEI+A LAAGITQV Sbjct: 901 LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 961 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH DGSERVLSDGD+VEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLIDRAEFE+ENRRVVAESGEP Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARA+AYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR Sbjct: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >sp|A0PM25|RPOC_MYCUA Tax_Id=362242 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium ulcerans] Length = 1316 Score = 2377 bits (6160), Expect = 0.0 Identities = 1204/1316 (91%), Positives = 1238/1316 (94%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT+VD EMRHNELSTLEAEMMVERK+VEDQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RD GEREMRQLR+RAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct: 181 LAELEAEGAKADARRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YREL DRYGEYFTGAMGAESIQKL++ FDI+AEAE LR+VIRNGKGQ Sbjct: 241 YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSPMGMVLDAVPVIPPELRP+VQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPMGMVLDAVPVIPPELRPLVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT V+GD GAY+ Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PA +D PE+GVYSSPAEAIMAADRGVLSVRAKIKV+LTQ+RPPA+IE FG NGW+PGD Sbjct: 601 PAVQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDELFGHNGWQPGD 660 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W A+TTLGRV+FNELLPLGY FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD+G Sbjct: 661 AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE Sbjct: 721 FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALR+HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRP+KSSF Sbjct: 781 ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGI+VE Sbjct: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA R DG+LIR+ YIETSAYARTLGA+AVDEAGNV+VARGEDLGDPEI+A LAAGITQV Sbjct: 901 LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 961 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFY I IVPDDGGEEVVYDKL Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYTIAIVPDDGGEEVVYDKL 1080 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH DGSERVLSDGD+VEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLIDRAEFE+ENRRVVAESGEP Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEAR +AYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR Sbjct: 1261 GTGINRYRNIAVQPTEEARVAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >sp|Q1BDE9|RPOC_MYCSS Tax_Id=164756 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium sp.] Length = 1315 Score = 2274 bits (5893), Expect = 0.0 Identities = 1147/1316 (87%), Positives = 1211/1316 (92%), Gaps = 1/1316 (0%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT V++EMRHNELSTLEAEM+VE+K+VEDQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVITDVNDEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RDGGEREMRQLR+RAQRELDRL++IW+TFTKLAPKQLIVDE L Sbjct: 181 LAELEAEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESI+KL+++FDIEAEAE+LRE IR+GKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIKKLIENFDIEAEAENLRETIRSGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLY+LTT ++GD G YR Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTTMIEGDKGEYR 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PAA D+PE GVYSSPAEAIMA DRG LSVRAKIKV+LTQ+RPPA +EA F NGW+PG Sbjct: 601 PAATDQPEEGVYSSPAEAIMAMDRGALSVRAKIKVRLTQLRPPAALEAELF-ENGWKPGL 659 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W A+TTLGRVMFNELLP+ YPF+N+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG Sbjct: 660 AWTAETTLGRVMFNELLPISYPFINEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 F+WATRSGVTVSMADVLVPP+K+EILD YE AD +E+++QRGALNH ERN++LV+IW++ Sbjct: 720 FHWATRSGVTVSMADVLVPPQKQEILDRYEAEADGIERKYQRGALNHKERNDSLVKIWQD 779 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 AT+EVG+AL +HYP DNPIITIV SGATGNFTQTR LAGMKGLVTNPKGEFIPRP+KSSF Sbjct: 780 ATEEVGKALEEHYPADNPIITIVKSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V Sbjct: 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA R PDGSLIR+ ++ETSA+ARTL +AVD GNV++ RG DLGDP ID LLAAGI V Sbjct: 900 LAERQPDGSLIRDPHVETSAFARTLATDAVDADGNVVIERGHDLGDPAIDKLLAAGIDHV 959 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 960 KVRSVLTCASATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEARVPR KAPIADV+GRV+LE+GERFYKITIVPDDGGEEVVYDKL Sbjct: 1020 GEDITGGLPRVQELFEARVPRNKAPIADVSGRVQLEEGERFYKITIVPDDGGEEVVYDKL 1079 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRV KH DGSE VLSDGD+VEVG QLMEGSADPHEVLRVQGPREVQIHLV EVQE Sbjct: 1080 SKRQRLRVIKHEDGSEGVLSDGDHVEVGDQLMEGSADPHEVLRVQGPREVQIHLVHEVQE 1139 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFESENRRVVAE GEP Sbjct: 1140 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAEGGEP 1199 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIPA Sbjct: 1200 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIPA 1259 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 GTGINRYRNIQVQPTEEARA+AYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR Sbjct: 1260 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1315 >sp|A1UBJ4|RPOC_MYCSK Tax_Id=189918 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium sp.] Length = 1315 Score = 2274 bits (5893), Expect = 0.0 Identities = 1147/1316 (87%), Positives = 1211/1316 (92%), Gaps = 1/1316 (0%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT V++EMRHNELSTLEAEM+VE+K+VEDQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVITDVNDEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RDGGEREMRQLR+RAQRELDRL++IW+TFTKLAPKQLIVDE L Sbjct: 181 LAELEAEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESI+KL+++FDIEAEAE+LRE IR+GKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIKKLIENFDIEAEAENLRETIRSGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLY+LTT ++GD G YR Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTTMIEGDKGEYR 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PAA D+PE GVYSSPAEAIMA DRG LSVRAKIKV+LTQ+RPPA +EA F NGW+PG Sbjct: 601 PAATDQPEEGVYSSPAEAIMAMDRGALSVRAKIKVRLTQLRPPAALEAELF-ENGWKPGL 659 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W A+TTLGRVMFNELLP+ YPF+N+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG Sbjct: 660 AWTAETTLGRVMFNELLPISYPFINEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 F+WATRSGVTVSMADVLVPP+K+EILD YE AD +E+++QRGALNH ERN++LV+IW++ Sbjct: 720 FHWATRSGVTVSMADVLVPPQKQEILDRYEAEADGIERKYQRGALNHKERNDSLVKIWQD 779 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 AT+EVG+AL +HYP DNPIITIV SGATGNFTQTR LAGMKGLVTNPKGEFIPRP+KSSF Sbjct: 780 ATEEVGKALEEHYPADNPIITIVKSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V Sbjct: 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA R PDGSLIR+ ++ETSA+ARTL +AVD GNV++ RG DLGDP ID LLAAGI V Sbjct: 900 LAERQPDGSLIRDPHVETSAFARTLATDAVDADGNVVIERGHDLGDPAIDKLLAAGIDHV 959 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 960 KVRSVLTCASATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEARVPR KAPIADV+GRV+LE+GERFYKITIVPDDGGEEVVYDKL Sbjct: 1020 GEDITGGLPRVQELFEARVPRNKAPIADVSGRVQLEEGERFYKITIVPDDGGEEVVYDKL 1079 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRV KH DGSE VLSDGD+VEVG QLMEGSADPHEVLRVQGPREVQIHLV EVQE Sbjct: 1080 SKRQRLRVIKHEDGSEGVLSDGDHVEVGDQLMEGSADPHEVLRVQGPREVQIHLVHEVQE 1139 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFESENRRVVAE GEP Sbjct: 1140 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAEGGEP 1199 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIPA Sbjct: 1200 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIPA 1259 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 GTGINRYRNIQVQPTEEARA+AYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR Sbjct: 1260 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1315 >sp|A3PV79|RPOC_MYCSJ Tax_Id=164757 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium sp.] Length = 1315 Score = 2274 bits (5893), Expect = 0.0 Identities = 1147/1316 (87%), Positives = 1211/1316 (92%), Gaps = 1/1316 (0%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT V++EMRHNELSTLEAEM+VE+K+VEDQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVITDVNDEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RDGGEREMRQLR+RAQRELDRL++IW+TFTKLAPKQLIVDE L Sbjct: 181 LAELEAEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESI+KL+++FDIEAEAE+LRE IR+GKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIKKLIENFDIEAEAENLRETIRSGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLY+LTT ++GD G YR Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTTMIEGDKGEYR 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PAA D+PE GVYSSPAEAIMA DRG LSVRAKIKV+LTQ+RPPA +EA F NGW+PG Sbjct: 601 PAATDQPEEGVYSSPAEAIMAMDRGALSVRAKIKVRLTQLRPPAALEAELF-ENGWKPGL 659 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W A+TTLGRVMFNELLP+ YPF+N+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG Sbjct: 660 AWTAETTLGRVMFNELLPISYPFINEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 F+WATRSGVTVSMADVLVPP+K+EILD YE AD +E+++QRGALNH ERN++LV+IW++ Sbjct: 720 FHWATRSGVTVSMADVLVPPQKQEILDRYEAEADGIERKYQRGALNHKERNDSLVKIWQD 779 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 AT+EVG+AL +HYP DNPIITIV SGATGNFTQTR LAGMKGLVTNPKGEFIPRP+KSSF Sbjct: 780 ATEEVGKALEEHYPADNPIITIVKSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V Sbjct: 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA R PDGSLIR+ ++ETSA+ARTL +AVD GNV++ RG DLGDP ID LLAAGI V Sbjct: 900 LAERQPDGSLIRDPHVETSAFARTLATDAVDADGNVVIERGHDLGDPAIDKLLAAGIDHV 959 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 960 KVRSVLTCASATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEARVPR KAPIADV+GRV+LE+GERFYKITIVPDDGGEEVVYDKL Sbjct: 1020 GEDITGGLPRVQELFEARVPRNKAPIADVSGRVQLEEGERFYKITIVPDDGGEEVVYDKL 1079 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRV KH DGSE VLSDGD+VEVG QLMEGSADPHEVLRVQGPREVQIHLV EVQE Sbjct: 1080 SKRQRLRVIKHEDGSEGVLSDGDHVEVGDQLMEGSADPHEVLRVQGPREVQIHLVHEVQE 1139 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFESENRRVVAE GEP Sbjct: 1140 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAEGGEP 1199 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIPA Sbjct: 1200 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIPA 1259 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 GTGINRYRNIQVQPTEEARA+AYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR Sbjct: 1260 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1315 >sp|A1T4J3|RPOC_MYCVP Tax_Id=350058 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium vanbaalenii] Length = 1317 Score = 2266 bits (5871), Expect = 0.0 Identities = 1143/1318 (86%), Positives = 1210/1318 (91%), Gaps = 3/1318 (0%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT VD+EMRHNELSTLEAEM VERK++EDQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMAVERKAIEDQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 +RK RDGGEREMRQLR+RAQRELDRLE+IW+TFTKLAPKQLIVDE L Sbjct: 181 MKELEDEGAKSDVKRKVRDGGEREMRQLRDRAQRELDRLEEIWTTFTKLAPKQLIVDELL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YREL DRYGEYF GAMGAESI+KL+++FDI+AEAESLR+ I+NGKGQ Sbjct: 241 YRELQDRYGEYFEGAMGAESIKKLIENFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTT ++GDTG + Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIEGDTGEFT 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PAA+D+PESGVYSSPAEAIMA DRG LSVRAKI+V+LTQ+RPPA+IEA F +GW GD Sbjct: 601 PAAKDQPESGVYSSPAEAIMALDRGALSVRAKIRVRLTQLRPPAEIEAERF-PDGWNMGD 659 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W A+TTLGRV+FNELLP GYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct: 660 AWTAETTLGRVLFNELLPRGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 719 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPP K+EIL+ YE AD +EKQ+QRG LN DERNEALV+IW++ Sbjct: 720 FYWATRSGVTVSMADVLVPPEKQEILERYEAEADSIEKQYQRGKLNKDERNEALVKIWQD 779 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 AT+EVGQALR HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRP+KSSF Sbjct: 780 ATEEVGQALRSHYPKDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC+TERGI V Sbjct: 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGITVT 899 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA + DG+L+R+ +IETSAYARTL +AVD GNVIV RG DLGDP IDALLAAGIT+V Sbjct: 900 LAEKQADGTLVRDQHIETSAYARTLATDAVDAKGNVIVERGHDLGDPAIDALLAAGITEV 959 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 960 KVRSVLTCGTGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query: 1021 --GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078 G DI GGLPRVQELFEAR+PR +APIADV+GR+RLE+ ++FYKITIVPDDGGEEVVYD Sbjct: 1020 TGGADIVGGLPRVQELFEARIPRNRAPIADVSGRIRLEESDKFYKITIVPDDGGEEVVYD 1079 Query: 1079 KLSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138 KLS+RQRL+VFKH DGSER+L+DGD+VEVGQQL+EGSADPHEVLRVQGPREVQIHLV+EV Sbjct: 1080 KLSRRQRLKVFKHDDGSERLLTDGDHVEVGQQLLEGSADPHEVLRVQGPREVQIHLVKEV 1139 Query: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESG 1198 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +R EFE+ENRRVVAE G Sbjct: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAEGG 1199 Query: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLI Sbjct: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLI 1259 Query: 1259 PAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 PAGTGINRYRNIQVQPTEEARA+AYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR Sbjct: 1260 PAGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317 >sp|A0QS66|RPOC_MYCS2 Tax_Id=246196 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium smegmatis] Length = 1317 Score = 2256 bits (5846), Expect = 0.0 Identities = 1141/1318 (86%), Positives = 1207/1318 (91%), Gaps = 3/1318 (0%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT+VD+EMRHNELSTLEAEM VE+K+VEDQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVITSVDDEMRHNELSTLEAEMAVEKKAVEDQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RD GEREMRQLR+RAQRELDRL++IW+TFTKLAPKQLIVDE L Sbjct: 181 LAELEAEGAKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YREL DRYGEYFTGAMGAESI+KL+++FDI+AEAESLREVIR+GKGQ Sbjct: 241 YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V+G TG Y+ Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 A +D PE GVYSSPAEAIMA DRG LSVRAKIKV+LT++RPP D+EA+ F NGW+PGD Sbjct: 601 AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W A+TTLGRVMFNELLP YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG Sbjct: 660 AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPP+K+EIL+ +E AD +E+++QRGALNH ERNE+LV+IW++ Sbjct: 720 FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 AT+EVG+AL + YP DNPIITIV SGATGN TQTR LAGMKGLVTNPKGEFIPRP+KSSF Sbjct: 780 ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V Sbjct: 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA R PDG+LIR+ ++ETSA+ARTL +AVD GNVI+ RG DLGDP IDALLAAGIT V Sbjct: 900 LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 960 KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query: 1021 --GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078 G DI GGLPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD Sbjct: 1020 TGGADIVGGLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079 Query: 1079 KLSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138 KLSKRQRLRV H DG+E VLSDGD+VEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV Sbjct: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139 Query: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESG 1198 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFE+ENRRVVAE G Sbjct: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199 Query: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI Sbjct: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259 Query: 1259 PAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 PAGTGI+RYRNIQVQPTEEARA+AYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR Sbjct: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317 >sp|A4T1P3|RPOC_MYCGI Tax_Id=350054 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium gilvum] Length = 1316 Score = 2244 bits (5816), Expect = 0.0 Identities = 1134/1318 (86%), Positives = 1205/1318 (91%), Gaps = 4/1318 (0%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT VD+EMRHNELSTLEAEM+VE+K++EDQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMVVEKKAIEDQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RDGGEREMRQLR+RAQRELDRL++IW+TFTKLAPKQLIVDE L Sbjct: 181 MKELEEEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDELL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YREL DRYGEYF GAMGAESI+KL++ FDI+AEA+SLR+ I+NGKGQ Sbjct: 241 YRELQDRYGEYFEGAMGAESIKKLIETFDIDAEADSLRDTIKNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVI+EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTT ++GD G + Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIEGDKGEFT 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PAA+D+PESGVYSSPAEAIMA DRG LSVRAKI+V+LTQ+RPPA+IEA F +GW GD Sbjct: 601 PAAKDQPESGVYSSPAEAIMAMDRGALSVRAKIRVRLTQLRPPAEIEAERF-PDGWNMGD 659 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W A+TTLGRV+FNELLP GYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct: 660 AWTAETTLGRVLFNELLPRGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 719 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPP K+EIL+ YE AD +EKQ+QRG L+ ERNEALV+IW++ Sbjct: 720 FYWATRSGVTVSMADVLVPPEKQEILERYEAAADSIEKQYQRGKLDKGERNEALVKIWQD 779 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 AT+EVGQALR HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRP+KSSF Sbjct: 780 ATEEVGQALRSHYPKDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC+TERGI V Sbjct: 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGITVT 899 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA + L+R+ +IETSAYARTL +AVD GNV+V RG DLGDP IDALLAAGIT+V Sbjct: 900 LA-ELQGDQLLRDQHIETSAYARTLATDAVDANGNVVVERGHDLGDPAIDALLAAGITEV 958 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 959 KVRSVLTCATGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1018 Query: 1021 --GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078 G DI GGLPRVQELFEAR+PR +APIADV+GR+RLE+ ++FYKITIVPDDGGEEVVYD Sbjct: 1019 TGGADIVGGLPRVQELFEARIPRNRAPIADVSGRIRLEESDKFYKITIVPDDGGEEVVYD 1078 Query: 1079 KLSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138 KLS+RQRL+VFKH DGSER+L+DGD+VEVGQQL+EGSADPHEVLRVQGPREVQIHLV+EV Sbjct: 1079 KLSRRQRLKVFKHDDGSERLLTDGDHVEVGQQLLEGSADPHEVLRVQGPREVQIHLVKEV 1138 Query: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESG 1198 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +R EFE+ENRRVVAE G Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAEGG 1198 Query: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLI Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLI 1258 Query: 1259 PAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 PAGTGINRYRNIQVQPTEEARA+AYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR Sbjct: 1259 PAGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >sp|B1MH61|RPOC_MYCA9 Tax_Id=561007 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Mycobacterium abscessus] Length = 1319 Score = 2231 bits (5781), Expect = 0.0 Identities = 1127/1320 (85%), Positives = 1200/1320 (90%), Gaps = 5/1320 (0%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+A+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLASADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT VD+E+RHNELSTLEAEM VE+K+V DQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RDGGEREMRQLR+R+QRELDRL++IW+TFTKLAPKQLIVDE L Sbjct: 181 LAELEAEGAKSDVRRKVRDGGEREMRQLRDRSQRELDRLDEIWTTFTKLAPKQLIVDEVL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAE++QKL+Q+FD++AEAE+LRE IR+GKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAEAVQKLIQNFDLDAEAENLRETIRSGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ S NSP GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQNSTNSPGGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTT + GD GA+ Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIPGDIGAHA 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PA +D+PE GVYSSPAEAIMA DRG LSVRA I+V+LTQ RPPA++EA F NGW+PGD Sbjct: 601 PAGKDQPEVGVYSSPAEAIMAMDRGALSVRAPIRVRLTQQRPPAEVEAELF-ENGWQPGD 659 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W+A+TTLGRV+FNELLP GYPFVNKQMHKKVQ+AIINDLAER+PMIVVAQTVDKLKDAG Sbjct: 660 AWVAETTLGRVLFNELLPHGYPFVNKQMHKKVQSAIINDLAERFPMIVVAQTVDKLKDAG 719 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 F+WATRSGVTVSMADVLVPP+K EILD YE+ A+++EKQ+QRGALN ER +ALV+IW+E Sbjct: 720 FHWATRSGVTVSMADVLVPPQKAEILDRYEKEAERIEKQYQRGALNQQERRDALVKIWQE 779 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVG+AL +HYP DNPI + SGATGN TQ R LAGMKGLVTNPKGE+IPRP+KSSF Sbjct: 780 ATDEVGKALEEHYPADNPITLLPKSGATGNMTQVRNLAGMKGLVTNPKGEYIPRPIKSSF 839 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC TERGI V Sbjct: 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGINVV 899 Query: 901 LAVRV--PDG--SLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAG 956 +A + PDG +LIR+ +IETSAYARTL A+AVD GNV+V RG DLGDP I+ LLAAG Sbjct: 900 IAEKQTGPDGKATLIRDAHIETSAYARTLAADAVDADGNVLVERGHDLGDPAIEKLLAAG 959 Query: 957 ITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFH 1016 +T VKVRSVL RSMATGKLVDIGEA GIVAAQSIGEPGTQLTMRTFH Sbjct: 960 VTTVKVRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAAGIVAAQSIGEPGTQLTMRTFH 1019 Query: 1017 QGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVV 1076 QGGVG+DITGGLPRV ELFEARVP+GKAPIADVTGRVRLE+GERFYKITIVPDDGGEEVV Sbjct: 1020 QGGVGDDITGGLPRVTELFEARVPKGKAPIADVTGRVRLEEGERFYKITIVPDDGGEEVV 1079 Query: 1077 YDKLSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVR 1136 YDKLSKRQRLRVFKH DGSER L+DGD+VEVGQQLMEG+ADPHEVLRV GPR+VQ+HLV Sbjct: 1080 YDKLSKRQRLRVFKHEDGSERPLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQVHLVN 1139 Query: 1137 EVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAE 1196 EVQEVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFESENRRVVAE Sbjct: 1140 EVQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAE 1199 Query: 1197 SGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK 1256 GEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK Sbjct: 1200 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK 1259 Query: 1257 LIPAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 LIPAGTGINRYRNI VQPTEEARA+AYTIPSYEDQYYSPDFG TGAAVPLDDYGYSDYR Sbjct: 1260 LIPAGTGINRYRNISVQPTEEARAAAYTIPSYEDQYYSPDFGSNTGAAVPLDDYGYSDYR 1319 >tr|A4KEZ2|A4KEZ2_MYCTU Tax_Id=395095 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium tuberculosis str. Haarlem] Length = 1289 Score = 2223 bits (5760), Expect = 0.0 Identities = 1141/1284 (88%), Positives = 1176/1284 (91%), Gaps = 9/1284 (0%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT+VDEEMRHNELSTLEAEM VERK+VEDQRD +LEAR Sbjct: 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK RDGGEREMRQ+R+RAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct: 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESIQKL+++FDI+AEAESLR+VIRNGKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT V DTG Y+ Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPEDTGEYQ 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PA+ D PE+GVYSSPAEAIMAADRGVLSVRAKIKV+LTQ+RPP +IEA FG +GW+PGD Sbjct: 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W+A+TTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct: 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALR+HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRPVKSSF Sbjct: 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA R PDG+LIR+ YIETSAYARTLG +AVDEAGNVIV RG+DLGDPEIDALLAAGITQV Sbjct: 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+ Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH DGSERVLSDGD+VEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFE+ENRRVVAE GEP Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query: 1201 AAGRPVLMG-ITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 AA G + + TRVLTDAAINCRSDKLNGLKENVIIGKLIP Sbjct: 1201 AARPSGADGHHERRRWPPTRGCRRRRSRRPTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260 Query: 1260 AGTGINRYRNIQVQPTEEARASAY 1283 AGT RY QP + R +A+ Sbjct: 1261 AGT---RY-----QPLPQHRGAAH 1276 >sp|Q5YPE1|RPOC_NOCFA Tax_Id=37329 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Nocardia farcinica] Length = 1317 Score = 2222 bits (5757), Expect = 0.0 Identities = 1121/1318 (85%), Positives = 1196/1318 (90%), Gaps = 3/1318 (0%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT+VDEE+RHNELSTLEAEM VE+K+V DQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVITSVDEELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK +DGGEREMRQ+R+RAQRELDRL++IW+TFTKLAPKQLIVDE L Sbjct: 181 LAELEAEGAKSDVRRKVKDGGEREMRQIRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YREL DRYGEYFTGAMGAESIQKLM++FDI+AEAESLRE IR GKGQ Sbjct: 241 YRELTDRYGEYFTGAMGAESIQKLMENFDIDAEAESLRETIRTGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ +GNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQANGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLT +G G YR Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTRLEEGAKGEYR 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PA D PE GVYSSPAEA MA DRG L+VR+KIKV+LT RPP D+EA F GW+ GD Sbjct: 601 PATADAPEFGVYSSPAEAQMAVDRGELTVRSKIKVRLTDQRPPKDVEAELF-PEGWQRGD 659 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W +TTLGRV+FNELLP YPF+N+ M KK QA IINDLAERYPMIVVAQTVDKLKDAG Sbjct: 660 AWTTETTLGRVLFNELLPADYPFINEPMPKKRQATIINDLAERYPMIVVAQTVDKLKDAG 719 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSM+DVLVPP K EI++ YE ++D++EK++QRGAL+H ERN ALV+IW+E Sbjct: 720 FYWATRSGVTVSMSDVLVPPEKAEIMERYEAQSDQIEKKYQRGALDHQERNNALVKIWQE 779 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 AT+EVG+ALR HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRP+KSSF Sbjct: 780 ATEEVGKALRAHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC TERGIVV Sbjct: 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGIVVP 899 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 +A + PDGS+IR+ ++ETS YARTL A+AVD GNVIVA+G DLGDP ++ALL AGIT+V Sbjct: 900 IAEKQPDGSIIRDPHVETSTYARTLAADAVDANGNVIVAKGADLGDPALEALLEAGITEV 959 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 960 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079 G+DITGGLPRVQELFEARVP+GKAPIA+V+GRVRLED +RFYKITI+PDDGGEEVVYDK Sbjct: 1020 AGDDITGGLPRVQELFEARVPKGKAPIAEVSGRVRLEDDDRFYKITIIPDDGGEEVVYDK 1079 Query: 1080 LSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139 LSKRQRLRVFKH DG+ER+LSDGD+VEVGQQL+EG+ADPHEVLRV GPR+VQ+HLV EVQ Sbjct: 1080 LSKRQRLRVFKHDDGTERLLSDGDHVEVGQQLLEGAADPHEVLRVMGPRQVQVHLVHEVQ 1139 Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGE 1199 EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFE+ NRRVVAE GE Sbjct: 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAANRRVVAEGGE 1199 Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 PA+GRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP Sbjct: 1200 PASGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259 Query: 1260 AGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYSDYR 1316 AGTGINRYRNIQVQPTEEARA+AY +PSY+D YYSPD FG +TGAAVPLDDYG+SDYR Sbjct: 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDSFGSSTGAAVPLDDYGFSDYR 1317 >sp|Q0SFB4|RPOC_RHOSR Tax_Id=101510 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Rhodococcus sp.] Length = 1318 Score = 2170 bits (5624), Expect = 0.0 Identities = 1108/1319 (84%), Positives = 1180/1319 (89%), Gaps = 4/1319 (0%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+AEDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVI VDEE+RHNELSTLEAEM VE+KSV DQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKSVADQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK +DGGEREMRQLR+RAQRELDRL++IW+TFTKL+ KQLIVDE L Sbjct: 181 IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIVDELL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESIQKLM++FDI+AEAE+LRE IR+GKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIQKLMENFDIDAEAENLRETIRSGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ + NSPMGMVL+AVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQTNQNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LT +G G Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRLDEGAIGELA 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 + D E GVYSSPAEA MA DRG L V+AKIKV+LTQ RPP DIE+ F GW GD Sbjct: 601 ASTSDEAEQGVYSSPAEAQMAVDRGALVVQAKIKVRLTQQRPPRDIESELF-PEGWNYGD 659 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W A+TTLGRV+FNELLP YPFVN+QM KK QA IINDLAERYPMIVVAQTVDKLKDAG Sbjct: 660 GWTAETTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDAG 719 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVS++DVLVPP K +I++ +E +AD++EK++QRGALN ERN ALV+IW E Sbjct: 720 FYWATRSGVTVSISDVLVPPEKAQIMESFEAQADQIEKKYQRGALNKTERNSALVKIWSE 779 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVG+A+ H+P DNPI IV SGA GN TQ R+LAGMKGLVTNPKGEFIPRP+KSSF Sbjct: 780 ATDEVGKAMEAHFPDDNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSF 839 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 +EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGIV Sbjct: 840 KEGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTT 899 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 +A + DG+LIR+ ++ETS YARTL A+AVDE GNVIV RG DLGDP IDALL AGITQV Sbjct: 900 IAEKQADGTLIRDAHVETSTYARTLAADAVDENGNVIVERGHDLGDPAIDALLEAGITQV 959 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 960 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079 G+DITGGLPRVQELFEARVP+GKAPIADV+GRV+LEDG+RFYKITIVPDDGGEEVVYDK Sbjct: 1020 AGDDITGGLPRVQELFEARVPKGKAPIADVSGRVQLEDGDRFYKITIVPDDGGEEVVYDK 1079 Query: 1080 LSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139 LSKRQRLRVFKH DG+ER+L+DGD+VEVGQQLMEG+ADPHEVLRV GPR+VQIHLV EVQ Sbjct: 1080 LSKRQRLRVFKHDDGTERLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQ 1139 Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGE 1199 EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RA+FE+ NRRVVAE GE Sbjct: 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERADFEAANRRVVAEGGE 1199 Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP Sbjct: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259 Query: 1260 AGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1316 AGTGINRYRNIQVQPTEEARA+AY +PSY+DQYYSPD FGQ TGAAVPLDDYG+S DYR Sbjct: 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSNDYR 1318 >sp|C1AYV8|RPOC_RHOOB Tax_Id=632772 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Rhodococcus opacus] Length = 1318 Score = 2170 bits (5622), Expect = 0.0 Identities = 1107/1319 (83%), Positives = 1180/1319 (89%), Gaps = 4/1319 (0%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+AEDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVI VDEE+RHNELSTLEAEM VE+K+V DQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKTVADQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK +DGGEREMRQLR+RAQRELDRL++IW+TFTKL+ KQLIVDE L Sbjct: 181 IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIVDELL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESIQKLM+ FDI+AEAE+LRE IR+GKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIQKLMESFDIDAEAENLRETIRSGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ + NSPMGMVL+AVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQANQNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LT +G TG Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRLDEGATGELA 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 + + E GVYSSPAEA MA DRG L V+AKIKV+LTQ RPP DIEA F GW GD Sbjct: 601 ASTNEESEQGVYSSPAEAQMAVDRGALVVQAKIKVRLTQQRPPRDIEAELF-PEGWNYGD 659 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W A+TTLGRV+FNELLP YPFVN+QM KK QA IINDLAERYPMIVVAQTVDKLKDAG Sbjct: 660 GWTAETTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDAG 719 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVS++DVLVPP K +I++ +E +AD++EK++QRGALN ERN ALV+IW E Sbjct: 720 FYWATRSGVTVSISDVLVPPEKAQIMESFEAQADQIEKKYQRGALNKTERNSALVKIWSE 779 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVG+A+ H+P DNPI IV SGA GN TQ R+LAGMKGLVTNPKGEFIPRP+KSSF Sbjct: 780 ATDEVGKAMEAHFPDDNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSF 839 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 +EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGIV Sbjct: 840 KEGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTT 899 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 +A + DGS+IR+ ++ETS YARTL A+AVDE GNVIV RG DLGDP IDALL AGITQV Sbjct: 900 IAEKQADGSMIRDAHVETSTYARTLAADAVDENGNVIVERGHDLGDPAIDALLEAGITQV 959 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 960 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079 G+DITGGLPRVQELFEARVP+GKAPIADV+GRV+LEDG+RFYKITIVPDDGGEEVVYDK Sbjct: 1020 AGDDITGGLPRVQELFEARVPKGKAPIADVSGRVQLEDGDRFYKITIVPDDGGEEVVYDK 1079 Query: 1080 LSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139 LSKRQRLRVFKH DG+ER+L+DGD+VEVGQQLMEG+ADPHEVLRV GPR+VQIHLV EVQ Sbjct: 1080 LSKRQRLRVFKHDDGTERLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQ 1139 Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGE 1199 EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RA+FE+ NRRVVAE GE Sbjct: 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERADFEAANRRVVAEGGE 1199 Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP Sbjct: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259 Query: 1260 AGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1316 AGTGINRYRNIQVQPTEEARA+AY +PSY+DQYYSPD FG+ TGAAVPLDDYG+S DYR Sbjct: 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGRNTGAAVPLDDYGFSNDYR 1318 >sp|C0ZVQ7|RPOC_RHOE4 Tax_Id=234621 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Rhodococcus erythropolis] Length = 1318 Score = 2155 bits (5585), Expect = 0.0 Identities = 1102/1319 (83%), Positives = 1173/1319 (88%), Gaps = 4/1319 (0%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+AEDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVI VDEE+RHNELSTLEAEM VE+K+V DQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKTVADQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK +DGGEREMRQLR+RAQRELDRL++IW+TFTKL+ KQLI+DE L Sbjct: 181 IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIIDELL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESIQ LMQ+FD++AEAESLRE IR+GKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIQILMQNFDLDAEAESLRETIRSGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ +GNSPMGMVL+AVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQTNGNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVER+R Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERKR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 VQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGL++LT +G TG Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLDEGVTGELV 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 D E GVYSSPAEA MA DRG LSV+A+IKV+LTQ RPP D+E F GW+ GD Sbjct: 601 APTNDEAEQGVYSSPAEAQMAVDRGALSVQAQIKVRLTQQRPPRDLENELF-PEGWKYGD 659 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W A TTLGRV+FNELLP YPFVN+QM KK QA IINDLAERYPMIVVAQTVDKLKD G Sbjct: 660 GWTATTTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDVG 719 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVS++DVLVPP K I++ +E +ADK+EKQ+QRGAL+ ERN ALV IW+E Sbjct: 720 FYWATRSGVTVSISDVLVPPEKPAIIEDFEAQADKIEKQYQRGALDKKERNSALVTIWQE 779 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATD+VG+A+ H+P NPI IV SGA GN TQ R+LAGMKGLVTNPKGEFIPRP+KSSF Sbjct: 780 ATDKVGKAMEAHFPDSNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSF 839 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 +EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGIV Sbjct: 840 KEGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTT 899 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 +A + DG++IR+ ++ETS YARTL A+AVD G VIV RG DLGDP IDALL AGIT V Sbjct: 900 IAEKQADGTMIRDAHVETSTYARTLAADAVDANGTVIVERGHDLGDPAIDALLEAGITTV 959 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 960 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079 G+DITGGLPRVQELFEARVP+GKAPIADVTGRV+LEDG+RFYKITIVPDDGGEEVVYDK Sbjct: 1020 AGDDITGGLPRVQELFEARVPKGKAPIADVTGRVQLEDGDRFYKITIVPDDGGEEVVYDK 1079 Query: 1080 LSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139 LSKRQRLRVFKHADG E +L+DGD+VEVGQQLMEG+ADPHEVLRV GPR+VQIHLV EVQ Sbjct: 1080 LSKRQRLRVFKHADGRESLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQ 1139 Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGE 1199 EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFES NRRVVAE GE Sbjct: 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESANRRVVAEGGE 1199 Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP Sbjct: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259 Query: 1260 AGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1316 AGTGINRYRNIQVQPTEEARA+AY +PSY+DQYYSPD FGQ TGAAVPLDDYG+S DYR Sbjct: 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSNDYR 1318 >tr|C3JJR1|C3JJR1_RHOER Tax_Id=596309 (rpoC)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Rhodococcus erythropolis SK121] Length = 1318 Score = 2155 bits (5583), Expect = 0.0 Identities = 1102/1319 (83%), Positives = 1172/1319 (88%), Gaps = 4/1319 (0%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+AEDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVI VDEE+RHNELSTLEAEM VE+K+V DQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKTVADQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK +DGGEREMRQLR+RAQRELDRL++IW+TFTKL+ KQLI+DE L Sbjct: 181 IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIIDELL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YRELVDRYGEYFTGAMGAESIQ LMQ+FD++AEAESLRE IR+GKGQ Sbjct: 241 YRELVDRYGEYFTGAMGAESIQILMQNFDLDAEAESLRETIRSGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ +GNSPMGMVL+AVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQTNGNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVER+R Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERKR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 VQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGL++LT +G TG Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLDEGVTGELV 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 D E GVYSSPAEA MA DRG LSV+A+IKV+LTQ RPP D+E F GW GD Sbjct: 601 APTNDEAEQGVYSSPAEAQMAVDRGALSVQAQIKVRLTQQRPPRDLENELF-PEGWNYGD 659 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W A TTLGRV+FNELLP YPFVN+QM KK QA IINDLAERYPMIVVAQTVDKLKD G Sbjct: 660 GWTATTTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDVG 719 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVS++DVLVPP K I++ +E +ADK+EKQ+QRGAL+ ERN ALV IW+E Sbjct: 720 FYWATRSGVTVSISDVLVPPEKPAIIEDFEAQADKIEKQYQRGALDKKERNSALVTIWQE 779 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATD+VG+A+ H+P NPI IV SGA GN TQ R+LAGMKGLVTNPKGEFIPRP+KSSF Sbjct: 780 ATDKVGKAMEAHFPDSNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSF 839 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 +EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGIV Sbjct: 840 KEGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTT 899 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 +A + DG++IR+ ++ETS YARTL A+AVD G VIV RG DLGDP IDALL AGIT V Sbjct: 900 IAEKQADGTMIRDAHVETSTYARTLAADAVDANGTVIVERGHDLGDPAIDALLEAGITTV 959 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 960 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079 G+DITGGLPRVQELFEARVP+GKAPIADVTGRV+LEDG+RFYKITIVPDDGGEEVVYDK Sbjct: 1020 AGDDITGGLPRVQELFEARVPKGKAPIADVTGRVQLEDGDRFYKITIVPDDGGEEVVYDK 1079 Query: 1080 LSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139 LSKRQRLRVFKHADG E +L+DGD+VEVGQQLMEG+ADPHEVLRV GPR+VQIHLV EVQ Sbjct: 1080 LSKRQRLRVFKHADGRESLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQ 1139 Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGE 1199 EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFES NRRVVAE GE Sbjct: 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESANRRVVAEGGE 1199 Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP Sbjct: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259 Query: 1260 AGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1316 AGTGINRYRNIQVQPTEEARA+AY +PSY+DQYYSPD FGQ TGAAVPLDDYG+S DYR Sbjct: 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSNDYR 1318 >tr|D0L4Z5|D0L4Z5_9ACTO Tax_Id=526226 SubName: Full=DNA-directed RNA polymerase, beta' subunit;[Gordonia bronchialis DSM 43247] Length = 1318 Score = 2145 bits (5557), Expect = 0.0 Identities = 1086/1319 (82%), Positives = 1166/1319 (88%), Gaps = 4/1319 (0%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDEL+IGLATA+DI WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELKIGLATADDIHNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVT+AKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTKAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT VD+E+RHNELSTLEAEM VE+K+V DQRD DL R Sbjct: 121 APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDVDLNERQQKLEQD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK +DG EREMR++R+ AQRELD L+++W FTKLAP+ LI+DE L Sbjct: 181 LAELEAEGAKADVRRKVKDGAEREMRRMRDSAQRELDALDELWDKFTKLAPRDLIIDEKL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 Y +LV+RYGEYFTG+MGAE+I+KL++ FDI+AEA+SLR+ IRNGKGQ Sbjct: 241 YHQLVERYGEYFTGSMGAEAIKKLLETFDIDAEADSLRDTIRNGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSP+GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLN AQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNQAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P VWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PAVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT +G G Y Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTLTEGAVGEYT 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 PA D E GVYSSPAEAIMA DRG L+V+++IKV+LT RPPA+IEA F GW G Sbjct: 601 PATADDVERGVYSSPAEAIMAVDRGALTVQSRIKVRLTDQRPPAEIEAELF-PEGWSFGQ 659 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 PW ADTTLGRV+FNELLP+ YP+VN+QM KK QA IINDLAERYPMIVVAQTVDKLKD G Sbjct: 660 PWDADTTLGRVLFNELLPVEYPYVNEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDVG 719 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPP+K EILD YEERAD +E++FQRGAL DER +ALVEIWK+ Sbjct: 720 FYWATRSGVTVSMADVLVPPQKAEILDKYEERADGLERKFQRGALTPDERRDALVEIWKQ 779 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 AT+EVG A+ HYP DNPI IV SGA GN TQ R+LAGMKGLVTNPKGEFIPRP+KSSF Sbjct: 780 ATEEVGAAMEAHYPDDNPIPMIVKSGAAGNMTQIRSLAGMKGLVTNPKGEFIPRPIKSSF 839 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTV EYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI Sbjct: 840 REGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGITTT 899 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 +A R PDG+LIR+ ++ETS YARTL +A+D GNVIV RG DLGDP I+ALLAAGITQV Sbjct: 900 IAERQPDGTLIRDAHVETSTYARTLATDALDADGNVIVERGHDLGDPAIEALLAAGITQV 959 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGI+AAQSIGEPGTQLTMRTFHQGGV Sbjct: 960 KVRSVLTCATGTGVCAHCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQGGV 1019 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 G+DITGGLPRVQELFEARVP+G APIA+V+GRVRLED +RFYKITIVPDDG EEVV DK+ Sbjct: 1020 GDDITGGLPRVQELFEARVPKGVAPIAEVSGRVRLEDDDRFYKITIVPDDGSEEVVIDKI 1079 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH DGSER+LSDGD+VEVGQQLMEGSA+PHEVLRV GPR+VQ+HLV EVQE Sbjct: 1080 SKRQRLRVFKHDDGSERLLSDGDHVEVGQQLMEGSANPHEVLRVMGPRQVQVHLVNEVQE 1139 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYR+QGVSIHDKHIE IVRQMLRRVTIID GSTEFLPGSL++RAEFE+ NR+VVAE GEP Sbjct: 1140 VYRSQGVSIHDKHIETIVRQMLRRVTIIDHGSTEFLPGSLVERAEFEAANRQVVAEGGEP 1199 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLAT+SWLSAASFQETTRVLTDAAIN RSDKL GLKENVIIGKLIPA Sbjct: 1200 AAGRPVLMGITKASLATESWLSAASFQETTRVLTDAAINSRSDKLIGLKENVIIGKLIPA 1259 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD--FGQATGAAVPLDDYGYS-DYR 1316 GTGINRYRNIQVQPTEEARA+AY +PSY+D YYSPD FG GAAVPLDDYG+S DYR Sbjct: 1260 GTGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDGTFGAPAGAAVPLDDYGFSNDYR 1318 >tr|C2ALB8|C2ALB8_TSUPA Tax_Id=521096 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Tsukamurella paurometabola DSM 20162] Length = 1318 Score = 2135 bits (5531), Expect = 0.0 Identities = 1080/1316 (82%), Positives = 1165/1316 (88%), Gaps = 3/1316 (0%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDEL+IGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELKIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT VDEE RHNE STLEAE+ E+K + DQRD DLE R Sbjct: 121 APKDLEKIIYFAAYVITEVDEEQRHNEQSTLEAEIESEKKVLADQRDVDLENRAKKLEDD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK +DGGEREMRQ+R+RAQR +D L++IW+TF KLAPK +IVDE L Sbjct: 181 LAVLEAEGAKADQRRKVKDGGEREMRQIRDRAQRAIDELDEIWTTFVKLAPKDMIVDEKL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YREL DRYGEYF GAMGAE+I+KL+++FDI+AEAE LREVIR+GKGQ Sbjct: 241 YRELQDRYGEYFKGAMGAEAIKKLIENFDIDAEAEILREVIRSGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQQSGNSP+GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTT GAY Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTTEKADAQGAYT 600 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 A +D+PE+GVYSSPAEAIMA D G LS++A IKV+LT RPPA+IEA F W G Sbjct: 601 AAKKDQPETGVYSSPAEAIMAVDLGELSIQAPIKVRLTNQRPPAEIEAEQFDG-AWERGQ 659 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W A+TTLGRV+FNELLP+ YPFV++QM KK QA IINDLAERYPMIVVAQTVDKLKD+G Sbjct: 660 AWTAETTLGRVLFNELLPIDYPFVDEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDSG 719 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSM+DVLVPP KKEILD YEERAD +E+++ RGAL ER +ALVEIWK+ Sbjct: 720 FYWATRSGVTVSMSDVLVPPSKKEILDRYEERADGIERKYARGALTSGERRDALVEIWKQ 779 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVG+A+ D+YP DNPI I SGATGN TQ R LAGMKGLVTNPKGEFIPRP+KSSF Sbjct: 780 ATDEVGKAIDDYYPEDNPITMIPKSGATGNMTQVRNLAGMKGLVTNPKGEFIPRPIKSSF 839 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC T RGI+V Sbjct: 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCNTTRGIIVP 899 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 LA DGSLIR+ ++ETSAYARTL +A D GNVIV RG DLGDP+I+ALL AGI +V Sbjct: 900 LAEVQADGSLIRDAHVETSAYARTLAEDAKDAKGNVIVERGHDLGDPQIEALLEAGIAEV 959 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 960 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 G+DITGGLPRV ELFEARVP+GKAPIA+V+GR+RLED +RFY ITI PDDG EEVVYDK+ Sbjct: 1020 GDDITGGLPRVTELFEARVPKGKAPIAEVSGRIRLEDDDRFYTITITPDDGSEEVVYDKI 1079 Query: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH DG+ER+L+DGD+V+VGQQL+EG+ADPHEVLRV GPR+VQ+HLV EVQE Sbjct: 1080 SKRQRLRVFKHDDGTERLLADGDHVQVGQQLLEGAADPHEVLRVMGPRQVQVHLVNEVQE 1139 Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 VYR+QGVSIHDKHIE IVRQMLRRVTIIDSGSTEFLPGSL +RAEFE+ENRRVVAE GEP Sbjct: 1140 VYRSQGVSIHDKHIETIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGEP 1199 Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAIN RSDKL GLKENVIIGKLIPA Sbjct: 1200 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINTRSDKLVGLKENVIIGKLIPA 1259 Query: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD--FGQATGAAVPLDDYGYSD 1314 GTGIN+YRNIQVQPTEEARA+AY++P+++DQYY P+ FG +GAAVPLDDYG+SD Sbjct: 1260 GTGINKYRNIQVQPTEEARAAAYSVPTFDDQYYGPEGAFGAPSGAAVPLDDYGFSD 1315 >sp|A4FPP2|RPOC_SACEN Tax_Id=405948 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Saccharopolyspora erythraea] Length = 1303 Score = 2007 bits (5199), Expect = 0.0 Identities = 1015/1319 (76%), Positives = 1129/1319 (85%), Gaps = 19/1319 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAA VTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAASVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT+V+ EMRHNE+STLEAE+ VERK + DQRDADLEAR Sbjct: 121 APKDLEKIIYFAAYVITSVNTEMRHNEMSTLEAEIGVERKQIADQRDADLEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK ++GGEREMRQLR+RAQRELD+L++IW TFTKL P+QLI DE L Sbjct: 181 LAELEQEGAKSDVRRKVKEGGEREMRQLRDRAQRELDKLDEIWETFTKLEPRQLIADELL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YREL DR+GEYFTG MGAESIQ L+QDFDI AEA+ LRE IR+GKGQ Sbjct: 241 YRELYDRFGEYFTGGMGAESIQALLQDFDINAEADQLRETIRSGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ +GN+P GMVL+ VPVIPP+LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQATGNNPSGMVLNCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPK MA+ELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKEMAVELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LT +DG G Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRQLDGAKG--- 597 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 E +SS EAIMA DRG L ++AK+K+++ + P A+ W PG Sbjct: 598 -------EGQSFSSVGEAIMAFDRGGLDLQAKVKIRVRDLVPNAEQR-----PEDWEPGQ 645 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 PW+A+TTLGRV FNELLP YPFVN + KK QAAI+NDLAERYPM+ VAQT+DKLKDAG Sbjct: 646 PWLAETTLGRVWFNELLPEDYPFVNDLLPKKRQAAIVNDLAERYPMVTVAQTLDKLKDAG 705 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 F+WATRSGVTVS++DV+VPP K EILD YE +AD+VEK+++RGAL++ ERN LV++W Sbjct: 706 FHWATRSGVTVSISDVVVPPNKTEILDGYEAKADQVEKRYRRGALSYQERNAELVKVWTA 765 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 A DEV +A+ ++P DN I IV SGA GN TQ LAGM+GLV+NPKGE+IPRP+K++F Sbjct: 766 AKDEVAEAMEANFPEDNSISMIVKSGAAGNMTQVVQLAGMRGLVSNPKGEYIPRPIKANF 825 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGL+VLEYFI+ HGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI + Sbjct: 826 REGLSVLEYFISNHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGIRMP 885 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 +A ++PDG L+R+ ++ETS YART + D GNV++ARG DLGDP I+ LLAAG+T+V Sbjct: 886 IAEKLPDGKLLRDAHVETSVYARTTAEDVTDSDGNVVLARGSDLGDPAIEKLLAAGVTKV 945 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVD+GEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 946 KVRSVLTCESGVGVCAVCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1005 Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079 G+DIT GLPRVQELFEARVP+GKAPIAD GR+R+ED +R++KITI+PDDG EE+VYDK Sbjct: 1006 AGDDITTGLPRVQELFEARVPKGKAPIADAPGRIRMEDNDRYWKITIIPDDGSEEIVYDK 1065 Query: 1080 LSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139 LSKRQRL DG+ER ++DGD+V+VGQQL+EG+ DPHEVLRV GPRE Q+HLVREVQ Sbjct: 1066 LSKRQRLAAIS-VDGTERQITDGDHVDVGQQLLEGAVDPHEVLRVMGPREAQLHLVREVQ 1124 Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGE 1199 EVYR+QGV IHDKH+EVIVRQMLRRV IIDSG+TEFLPGS ++R++FE ENRRVVAE G+ Sbjct: 1125 EVYRSQGVGIHDKHVEVIVRQMLRRVIIIDSGATEFLPGSPVERSQFEGENRRVVAEGGD 1184 Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 PA+GRPVLMGITKASLAT+SWLSAASFQETTR+LT+AAI SDKL GLKENVIIGKLIP Sbjct: 1185 PASGRPVLMGITKASLATESWLSAASFQETTRILTNAAIEGASDKLVGLKENVIIGKLIP 1244 Query: 1260 AGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1316 AGTGINRYRNIQVQPTEEARA+AY IPSY+D YY+PD FG TGAAVPLDDY + DYR Sbjct: 1245 AGTGINRYRNIQVQPTEEARAAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDYR 1303 >tr|C7MTI8|C7MTI8_SACVD Tax_Id=471857 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Saccharomonospora viridis] Length = 1303 Score = 1976 bits (5120), Expect = 0.0 Identities = 1001/1319 (75%), Positives = 1119/1319 (84%), Gaps = 19/1319 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVIT+V+ E+R N+L TLE E+ VERK++E++RDA++E R Sbjct: 121 APKDLEKIIYFAAYVITSVNTELRQNDLPTLENEINVERKNIENKRDAEIEQRAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK ++ GEREMRQ+R+RAQRELDRLE++W+TFTKL P+QLIVDE L Sbjct: 181 LAELEAEGAKADVRRKVKESGEREMRQIRDRAQRELDRLEEVWTTFTKLEPRQLIVDEQL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YREL DRYGEYFTG MGAE+IQKL +FD++AEAE+LRE IR GKGQ Sbjct: 241 YRELYDRYGEYFTGGMGAEAIQKLASEFDVDAEAEALRETIRTGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ +GN P GMVLDA+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQSTGNDPRGMVLDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVI+VGPQLKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVER R Sbjct: 421 RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVI HPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PQVWDVLEEVINGHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLS+NNILSPASGRPLAMPRLDMVTGL++LT + GA Sbjct: 541 MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLDENAKGA-- 598 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 YSSPAEAIMA DRG L++ A +K+++ +PP EA GW PG Sbjct: 599 --------GAAYSSPAEAIMAYDRGQLALHAPVKIRIHDRQPPKSEEAA-LREKGWEPGK 649 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 PW+A+TTLGRV+FN+LLP YPFVN+ + KK QAAI+NDLAERY M VAQT+D LKDAG Sbjct: 650 PWLAETTLGRVLFNDLLPEDYPFVNEVLPKKRQAAIVNDLAERYSMTQVAQTLDGLKDAG 709 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 F+WATRSGVT+S+ DV+VPP+K+E+L+ YE +A +VEK++QRG L+H ERN LV++W + Sbjct: 710 FHWATRSGVTISITDVVVPPQKQELLEQYEAKAAQVEKRYQRGQLSHAERNNELVKVWSQ 769 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 AT++V +A+ ++ P DNPI IV SGA GN TQ R+LAGM+GLV+NPKGE+IPRP+K++F Sbjct: 770 ATEDVAKAMEENLPDDNPIAMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKANF 829 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTV EYFI THGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC T RGI Sbjct: 830 REGLTVAEYFIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTSRGITRT 889 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 +A +PDG L+R ++ETS YAR L A+AVDE GNVI+ GEDL DP I+ L+ AGI++V Sbjct: 890 IADELPDGRLVRAEHVETSVYARNLAADAVDEQGNVILNAGEDLSDPAIERLIQAGISKV 949 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATGKLVD+GEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 950 KVRSVLTCESAMGVCATCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1009 Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079 G+DIT GLPRV ELFEARVP+GKAPIADV GRVR+E+ ERF+KIT++PDDG EE+V+DK Sbjct: 1010 AGDDITTGLPRVTELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGSEEIVFDK 1069 Query: 1080 LSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139 LSKRQRL + G L+DGD+V+VGQ L+EG+ DPHEVLRV GPRE Q+HLV EVQ Sbjct: 1070 LSKRQRLAI-----GPNGPLADGDHVKVGQPLLEGTPDPHEVLRVMGPREAQMHLVEEVQ 1124 Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGE 1199 +VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPG L +R++FE NR+ VAE GE Sbjct: 1125 KVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGELPERSKFEQVNRKAVAEGGE 1184 Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 PA+GRPVLMGITKASL TDSWLSAASFQETTRVLTDAAIN RSD L GLKENVIIGKLIP Sbjct: 1185 PASGRPVLMGITKASLTTDSWLSAASFQETTRVLTDAAINGRSDALIGLKENVIIGKLIP 1244 Query: 1260 AGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1316 AGTGINRYRNIQVQPTEEAR +AY IPSY+D YY+PD FG TGAAVPLDDY + D+R Sbjct: 1245 AGTGINRYRNIQVQPTEEARVAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDFR 1303 >tr|C6WN59|C6WN59_ACTMD Tax_Id=446462 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Actinosynnema mirum] Length = 1298 Score = 1955 bits (5065), Expect = 0.0 Identities = 994/1319 (75%), Positives = 1114/1319 (84%), Gaps = 24/1319 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIRQWS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAYVI V+ E+RH + TL++EM VERK VE++RDAD+EAR Sbjct: 121 APKDLEKIIYFAAYVIVGVNAELRHTDQPTLDSEMQVERKRVENRRDADVEARAQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK ++GGEREMRQLR+RAQRELDRL++IWSTF KL QLI DE L Sbjct: 181 LAELEAEGAKSDVRRKVKEGGEREMRQLRDRAQRELDRLDEIWSTFVKLERAQLIADEQL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YREL DRYG+YFTGAMGAE+IQKL+ D+D++AEAE LRE IR+GKGQ Sbjct: 241 YRELYDRYGDYFTGAMGAEAIQKLLGDYDVDAEAEVLRETIRSGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ + N+P GMVLD VPVIPP+LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQATRNNPQGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVER R Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P VWDVLEEVI EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct: 481 PAVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEAR+LMLSSNNILSPASG+PLAMPRLDMVTGLY+LT + D G Sbjct: 541 MAVHLPLSAEAQAEARVLMLSSNNILSPASGKPLAMPRLDMVTGLYHLTWHKEDDLG--- 597 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 E YSSPAEA MA DR L ++A K+++T PP E GW PG Sbjct: 598 -------EGQAYSSPAEAQMAFDRKALGLQAMCKIRITDKNPPRGQE-----PEGWEPGQ 645 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 PW+A+TTLGRV+FNE+LP YPF+N+ M KK QA +INDLAERYPM+ VA+T+DKLKDAG Sbjct: 646 PWLAETTLGRVLFNEVLPQDYPFLNEVMPKKRQATVINDLAERYPMVTVARTLDKLKDAG 705 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 F+WATRSGVTV+++DVLVP K+ ILD YE+ AD VEK++QRG L++ ERN LV++W + Sbjct: 706 FHWATRSGVTVAISDVLVPEAKQGILDEYEKLADAVEKRYQRGQLSYTERNNELVKVWTK 765 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 AT++V Q + D++P DN I IV SGA GN TQ R+LAGM+GLVTNPKGE+IPRP+K+SF Sbjct: 766 ATEDVAQVMEDNFPEDNSIRKIVKSGAAGNMTQVRSLAGMRGLVTNPKGEYIPRPIKNSF 825 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGL+VLEYFI THGARKGLADTALRTADSGYLTRRLVDVSQDVI+RE DC T RG+ + Sbjct: 826 REGLSVLEYFIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREIDCGTTRGVGMT 885 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 + + D + E + +TS YARTL + D+ GN+++ RG+DLGDP + L+ + +V Sbjct: 886 VGEVLSDRVGLHE-FAQTSVYARTLAEDITDKDGNLVLNRGDDLGDPALQTLVTNNVVRV 944 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVL RSMATG+LVD+GEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct: 945 KVRSVLTCESAVGVCASCYGRSMATGQLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1004 Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079 G+DIT GLPRVQELFEARVP+GKAPIADV GRVR+EDG+RF+KIT++PDDG EE++++K Sbjct: 1005 AGDDITTGLPRVQELFEARVPKGKAPIADVDGRVRIEDGDRFWKITLIPDDGSEEILFEK 1064 Query: 1080 LSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139 LSKRQRL A+ + L DGD+V VGQQL+EG+ DPHEVLRV GPRE Q+HLV+EVQ Sbjct: 1065 LSKRQRL-----ANTATGPLQDGDHVSVGQQLLEGTPDPHEVLRVMGPREAQLHLVQEVQ 1119 Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGE 1199 +VYRAQGV+IHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL++RA+FES NR+VVAE GE Sbjct: 1120 KVYRAQGVAIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLVERADFESGNRQVVAEGGE 1179 Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAIN RSDKL GLKENVIIGKLIP Sbjct: 1180 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINGRSDKLIGLKENVIIGKLIP 1239 Query: 1260 AGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1316 AGTGINRYRNIQVQPTEEARA+AY IPSY+D YY+PD FG TGAAVPLDDY + DYR Sbjct: 1240 AGTGINRYRNIQVQPTEEARAAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDYR 1298 >tr|C8XBL0|C8XBL0_NAKMY Tax_Id=479431 SubName: Full=DNA-directed RNA polymerase, beta' subunit;[Nakamurella multipartita] Length = 1308 Score = 1888 bits (4891), Expect = 0.0 Identities = 962/1321 (72%), Positives = 1093/1321 (82%), Gaps = 18/1321 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRAWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 CGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 ACGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAY+IT VDE RHN+L T+EAEM VERK++E+ RDAD++AR Sbjct: 121 APKDLEKIIYFAAYLITAVDETARHNDLPTIEAEMGVERKNLENARDADIDARAKKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK R+GGERE RQ+R+RAQR +DRL+++ F KL+ +QLIVDE L Sbjct: 181 LAELEAEGAKSDVRRKVREGGEREQRQIRDRAQRAIDRLDEVLDLFRKLSVRQLIVDEVL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YREL DR+G+YFTG MGAE++++++ DFDI+AE E LR+ I+NGKGQ Sbjct: 241 YRELEDRFGDYFTGGMGAEALKQIISDFDIDAEVEILRDTIKNGKGQRKIRAIKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ + NSP+GMVLD VPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFQMTQNSPLGMVLDCVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVI+ HPV+LNRAPTLHRLGIQAFEP LVEGKAIQLHPLVC AFNADFDGDQ Sbjct: 481 PQVWDVLEEVISAHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVH+PLS+EAQAEAR+LMLSSNNILSP SGRPLAMP LD+VTGLYYL Y+ Sbjct: 541 MAVHVPLSSEAQAEARVLMLSSNNILSPGSGRPLAMPSLDLVTGLYYLC--------GYK 592 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLT-QVRPPADIEARWFGANGWRPG 659 P E + V+SSPAE IMA D G++ +RA IKV+L V+P D A + G Sbjct: 593 P--EAKGAGSVFSSPAEGIMALDAGLIDLRAPIKVRLPGSVKPSKDTLAAL--GEDYEAG 648 Query: 660 DPWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDA 719 PW+A+TTLGRV+FNELLP GYPFVN+++ KK QA I+NDLAE YPM VVAQ +D+LK+A Sbjct: 649 QPWLAETTLGRVLFNELLPDGYPFVNEELPKKRQAVIVNDLAEHYPMSVVAQVLDRLKEA 708 Query: 720 GFYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWK 779 GF+WATRSG+TV++ DV++PP K+EIL +E A++VEK +QRG L+H+ERN+ LV+IW+ Sbjct: 709 GFHWATRSGMTVAIGDVIIPPEKEEILLRHEIEAERVEKAYQRGNLSHEERNDDLVKIWE 768 Query: 780 EATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSS 839 AT E+ +AL YP DNP+ T+V++GA GN+ Q R+LAGMKG+V N KG+ IPRP++SS Sbjct: 769 AATREIEEALPPAYPADNPVSTLVNAGAAGNWIQVRSLAGMKGVVANSKGQQIPRPIRSS 828 Query: 840 FREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVV 899 FREGL+VLEYFINTH ARKGLADTALRTA+SGYLTRRLVDVSQDVIVRE DC TERG+ + Sbjct: 829 FREGLSVLEYFINTHSARKGLADTALRTAESGYLTRRLVDVSQDVIVRETDCGTERGVTL 888 Query: 900 ELAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQ 959 +A R DGSL +IETS R L + V E G V+V G D+ + + + AGIT Sbjct: 889 PMADRYADGSLHINEFIETSVQGRVLAGDLVAEDGTVVVPAGTDMREHHVRDAVNAGITL 948 Query: 960 VKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGG 1019 KVRSVL RS+ATG LVD+GEAVGIVAAQSIGEPGTQLTMRTFH G Sbjct: 949 AKVRSVLTCEAAIGTCAVCYGRSLATGNLVDVGEAVGIVAAQSIGEPGTQLTMRTFHTGA 1008 Query: 1020 V--GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVY 1077 DIT GLPRVQELFEARVP+GKAPIAD GR+R+ED ++F+KI + PDDG EE+VY Sbjct: 1009 ASGSSDITQGLPRVQELFEARVPKGKAPIADAAGRIRIEDADKFFKIIVTPDDGSEEIVY 1068 Query: 1078 DKLSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVRE 1137 +KL K QRL DGSER+L DGD+V VGQQL+EG+ DPHEVLRV G REVQ+HLVRE Sbjct: 1069 EKLPKTQRLATMT-VDGSERLLVDGDHVSVGQQLLEGNPDPHEVLRVMGQREVQLHLVRE 1127 Query: 1138 VQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAES 1197 VQ VYR+QGV IHDKHIEVI+RQMLRRVTIIDSGSTEFLPG++I+R EFE+ NRRV+AE Sbjct: 1128 VQNVYRSQGVGIHDKHIEVIIRQMLRRVTIIDSGSTEFLPGAVIERKEFEASNRRVLAEG 1187 Query: 1198 GEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKL 1257 GEPAAGRP LMGITKASLAT+SWLSAASFQETTRVLTDAAIN +SDKL GLKENVIIGKL Sbjct: 1188 GEPAAGRPALMGITKASLATESWLSAASFQETTRVLTDAAINAKSDKLVGLKENVIIGKL 1247 Query: 1258 IPAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DY 1315 IPAGTGI RYR+IQVQPTEEARA+AYT+PS++D YY D FG ATGAAVPLDD+ DY Sbjct: 1248 IPAGTGIARYRDIQVQPTEEARAAAYTLPSFDDTYYGADTFGVATGAAVPLDDFDLGRDY 1307 Query: 1316 R 1316 R Sbjct: 1308 R 1308 >sp|Q4JT33|RPOC_CORJK Tax_Id=306537 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Corynebacterium jeikeium] Length = 1323 Score = 1872 bits (4848), Expect = 0.0 Identities = 953/1321 (72%), Positives = 1096/1321 (82%), Gaps = 14/1321 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRRWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 GCGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAA +IT+VDEE RHN+ STLEAEM++E+K VE +RDA+L R Sbjct: 121 APKDLEKIIYFAANIITSVDEEGRHNDQSTLEAEMLLEKKEVEQERDAELADRAKTLEDD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 ++K ++ +REMR +RERA+RE+DRL++IW+TF KLAPKQ+IVDEN+ Sbjct: 181 LAELEAAGAKNDAKKKVQNAADREMRHIRERAEREIDRLDEIWNTFVKLAPKQMIVDENI 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 Y ELVDRY +YFTG MGAE+IQ L++ FD+EAEAESLREVIR+GKGQ Sbjct: 241 YNELVDRYEDYFTGGMGAEAIQTLIRSFDLEAEAESLREVIRDGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 F +SGN P GMVLD +PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR++DL Sbjct: 301 AFLRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMLDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVI+VGPQLKLHQCGLPKLMALELFKPFVMKRLV+ ++AQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVEKSYAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P+VWDVLEE IAEHPV+LNRAPTLHRLGIQAFEP+LVEGKAIQLHPL CEAFNADFDGDQ Sbjct: 481 PEVWDVLEEAIAEHPVMLNRAPTLHRLGIQAFEPILVEGKAIQLHPLACEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVD----GDT 596 MAVHLPLSAEAQAEARILML+SNNILSPASG+PLAMPRLDMVTGLYYLT G Sbjct: 541 MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTLLKKPEEFGGQ 600 Query: 597 GAYRPAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGW 656 GAY PA ED P GVYSS AEAIMA DRGVL ++A I V+++ +RP A+IEA F +GW Sbjct: 601 GAYAPATEDGPAQGVYSSLAEAIMAYDRGVLGLQAPIHVRISHLRPTAEIEAELF-PDGW 659 Query: 657 RPGDPWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKL 716 + G W+A+TTLGRV+FNELLP YP+V M KK QA++INDLA +YPMI VAQTVDKL Sbjct: 660 QRGQTWLAETTLGRVLFNELLPWNYPYVEGVMAKKPQASVINDLAAKYPMITVAQTVDKL 719 Query: 717 KDAGFYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVE 776 KDAGFYWATRSGVT++M DVLV P K+E+LD+YE +A +EK+ RG +N ER ++LV+ Sbjct: 720 KDAGFYWATRSGVTITMHDVLVLPNKQEVLDNYEAKARVIEKKMARGKINEAERYQSLVD 779 Query: 777 IWKEATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPV 836 +WKEATD VGQ++ D YP DNPI IV SGA GN Q LAGMKG+VTN +GE+I RP+ Sbjct: 780 LWKEATDYVGQSVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVTNSRGEYITRPI 839 Query: 837 KSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERG 896 K+SFREGL+VLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVRE DC T++G Sbjct: 840 KTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTKQG 899 Query: 897 IVVELAVRV------PDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEID 950 VV +AV V P G+ ++ETS R L ++A G VIVA G+ +G+ E+ Sbjct: 900 AVVPVAVPVLDAEGKPTGNYTAADFVETSVLGRYLASDATASDGTVIVAEGDVVGEGELQ 959 Query: 951 ALLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQL 1010 ALL AG+ +VKVRSV+ RSMATGK V+IGEAVGIVAAQSIGEPGTQL Sbjct: 960 ALLEAGVEEVKVRSVMTCATNTGVCSTCYGRSMATGKKVEIGEAVGIVAAQSIGEPGTQL 1019 Query: 1011 TMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDD 1070 TMRTFH GGVG DITGGLPRVQELFEARVP+ K+PIA V G+VR+ED + F+ +TI PDD Sbjct: 1020 TMRTFHLGGVGGDITGGLPRVQELFEARVPKAKSPIASVDGKVRIEDDDNFFTLTIEPDD 1079 Query: 1071 GGEEVVYDKLSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREV 1130 G ++VVY+KLSKRQ L G ER + DGD+V++GQQL++G+ADPHEVLRV G R V Sbjct: 1080 GSDDVVYEKLSKRQGLATL-GTGGVERPIRDGDHVKMGQQLLKGAADPHEVLRVMGRRGV 1138 Query: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESEN 1190 Q HL+ EVQ+VYR QGV+IHDKHIE+IVRQMLRRVT+IDSGSTEFLPGSL+D A+ + + Sbjct: 1139 QQHLINEVQKVYRDQGVAIHDKHIEIIVRQMLRRVTVIDSGSTEFLPGSLVDHADAVAAS 1198 Query: 1191 RRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKE 1250 + V G P R +MGITKASLAT+SWLSAASFQETTRVLTDAAIN RSDKL GLKE Sbjct: 1199 KEAVKTGGRPVEVRAEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKE 1258 Query: 1251 NVIIGKLIPAGTGINRYRNIQVQPTEEARASAYTIP-SYEDQYYSPD-FGQATGAAVPLD 1308 NVIIGKLIPAGTGI+RYRNI V+PTEEARA+AY++P S+ D +Y+ D +G+ TGAAVPLD Sbjct: 1259 NVIIGKLIPAGTGISRYRNISVEPTEEARAAAYSLPSSFGDGFYADDTYGEFTGAAVPLD 1318 Query: 1309 D 1309 D Sbjct: 1319 D 1319 >tr|C8RUP2|C8RUP2_CORJE Tax_Id=525262 (rpoC)SubName: Full=DNA-directed RNA polymerase, beta-prime subunit; EC=2.7.7.6;[Corynebacterium jeikeium ATCC 43734] Length = 1323 Score = 1863 bits (4825), Expect = 0.0 Identities = 947/1321 (71%), Positives = 1095/1321 (82%), Gaps = 14/1321 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRRWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 GCGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAA +IT+VDEE RHN+ STLEAEM++E+K VE +RDA+L R Sbjct: 121 APKDLEKIIYFAANIITSVDEEGRHNDQSTLEAEMLLEKKEVEQERDAELADRAKTLEDD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 ++K ++ +REMR +RERA+RE+DRL++IW+TF KLAPKQ+IVDEN+ Sbjct: 181 LAELEAAGAKNDAKKKVQNAADREMRHIRERAEREIDRLDEIWNTFVKLAPKQMIVDENI 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 Y ELVDRY +YFTG MGAE+IQ L++ FD+EAEAESLRE+IR+GKGQ Sbjct: 241 YNELVDRYEDYFTGGMGAEAIQTLIRSFDLEAEAESLREIIRDGKGQKKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 F +SGN P GMVLD +PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR++DL Sbjct: 301 AFLRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMLDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVI+VGPQLKLHQCGLPKLMALELFKPFVMKRLV+ ++AQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVEKSYAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P+VWDVLEE IAEHPV+LNRAPTLHRLGIQAFEP+LVEGKAIQLHPL CEAFNADFDGDQ Sbjct: 481 PEVWDVLEEAIAEHPVMLNRAPTLHRLGIQAFEPILVEGKAIQLHPLACEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVD----GDT 596 MAVHLPLSAEAQAEARILML+SNNILSPASG+PLAMPRLDMVTGLYYLT G Sbjct: 541 MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTLLKKPEEFGGQ 600 Query: 597 GAYRPAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGW 656 GA+ PA E+ P GVYSS AEAIMA DRGVL ++A I V+++ +RP A+IEA F +GW Sbjct: 601 GAFAPATEEGPAQGVYSSLAEAIMAYDRGVLGLQAPIHVRISHLRPTAEIEAELF-PDGW 659 Query: 657 RPGDPWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKL 716 + G W+A+TTLGRV+FNELLP YP+V M KK QAA+INDLA +YPMI VAQTVDKL Sbjct: 660 QRGQTWLAETTLGRVLFNELLPWNYPYVEGVMAKKPQAAVINDLAAKYPMITVAQTVDKL 719 Query: 717 KDAGFYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVE 776 KDAGFYWATRSGVT++M DVLV P K+E+LD+YE +A +EK+ RG +N ER ++LV+ Sbjct: 720 KDAGFYWATRSGVTITMHDVLVLPNKQEVLDNYEAKARVIEKKMARGKINEAERYQSLVD 779 Query: 777 IWKEATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPV 836 +WKEATD VGQ++ D YP DNPI IV SGA GN Q LAGMKG+VTN +GE+I RP+ Sbjct: 780 LWKEATDFVGQSVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVTNSRGEYITRPI 839 Query: 837 KSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERG 896 K+SFREGL+VLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVRE DC T++G Sbjct: 840 KTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTKQG 899 Query: 897 IVVELAVRV------PDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEID 950 V+ +AV V P G+ ++ETS R L ++A G V+VA G +G+ E+ Sbjct: 900 AVMPVAVPVLDAEGKPTGNYTPADFVETSVLGRYLASDATASDGTVVVAEGNVIGEGELK 959 Query: 951 ALLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQL 1010 AL+ AG+ +VKVRSV+ RSMATGK V+IGEAVGIVAAQSIGEPGTQL Sbjct: 960 ALIEAGVEEVKVRSVMTCATNTGVCSTCYGRSMATGKKVEIGEAVGIVAAQSIGEPGTQL 1019 Query: 1011 TMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDD 1070 TMRTFH GGVG DITGGLPRVQELFEARVP+ K+PIA V G+VR+ED + F+ +TI PDD Sbjct: 1020 TMRTFHLGGVGGDITGGLPRVQELFEARVPKAKSPIASVDGKVRIEDDDNFFTLTIEPDD 1079 Query: 1071 GGEEVVYDKLSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREV 1130 G ++VVY+KLSKRQ L G ER + +GD+V++GQQL++G+ADPHEVLRV G R V Sbjct: 1080 GSDDVVYEKLSKRQGLATL-GTGGVERPIRNGDHVKMGQQLLKGAADPHEVLRVLGRRGV 1138 Query: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESEN 1190 Q HL+ EVQ+VYR QGV+IHDKHIE+IVRQMLRRVT+IDSGSTEFLPGSL+D A+ + + Sbjct: 1139 QQHLINEVQKVYRDQGVAIHDKHIEIIVRQMLRRVTVIDSGSTEFLPGSLVDHADAVAAS 1198 Query: 1191 RRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKE 1250 + V G P R +MGITKASLAT+SWLSAASFQETTRVLTDAAIN RSDKL GLKE Sbjct: 1199 KEAVKAGGRPVEVRAEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKE 1258 Query: 1251 NVIIGKLIPAGTGINRYRNIQVQPTEEARASAYTIP-SYEDQYYSPD-FGQATGAAVPLD 1308 NVIIGKLIPAGTGI+RYRNI V+PTEEARA+AY++P S+ D +Y+ D +G+ TGAAVPLD Sbjct: 1259 NVIIGKLIPAGTGISRYRNISVEPTEEARAAAYSLPSSFGDGFYADDTYGEFTGAAVPLD 1318 Query: 1309 D 1309 D Sbjct: 1319 D 1319 >sp|B1VES2|RPOC_CORU7 Tax_Id=504474 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Corynebacterium urealyticum] Length = 1323 Score = 1841 bits (4768), Expect = 0.0 Identities = 932/1323 (70%), Positives = 1084/1323 (81%), Gaps = 14/1323 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRRWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 SCGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAA +IT+VDE+ RH++ +TLEAEM++E+K VE RDADL R Sbjct: 121 APKDLEKIIYFAANIITSVDEDARHSDQTTLEAEMLLEKKEVEQDRDADLADRAKTLEED 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 ++K ++ +REMR +RERA+RE++RL++IW+TF KLAPKQ+I DE L Sbjct: 181 LAELEAAGAKADAKKKVQNAADREMRHIRERAEREVERLDEIWNTFVKLAPKQMIADETL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 Y EL+DRY +YFTG MGAE+IQ L+++FD+EAEAESLREVIR+GKGQ Sbjct: 241 YEELLDRYEDYFTGGMGAEAIQTLIRNFDLEAEAESLREVIRDGKGQRKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 F +SGN P GMVLD +PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR++DL Sbjct: 301 AFLRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMLDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVI+VGPQLKLHQCGLPKLMALELFKPFVMKRLV+ ++AQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVEKSYAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P+VWDVLEE IAEHPV+LNRAPTLHRLGIQAFEP+L+EGKAIQLHPL CEAFNADFDGDQ Sbjct: 481 PEVWDVLEEAIAEHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLACEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVD----GDT 596 MAVHLPLS EAQAEARILML+SNNILSPASG+PLAMPRLDMVTGLYYLT G Sbjct: 541 MAVHLPLSDEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTLIKGKEEFGGQ 600 Query: 597 GAYRPAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGW 656 GA+ A E P +GVY+S AEAIMA DRGVL ++A I V++ +RPPA++EA F +GW Sbjct: 601 GAFTEATEQGPATGVYTSLAEAIMAYDRGVLGLQAPIHVRIDHLRPPAEVEAEQF-PDGW 659 Query: 657 RPGDPWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKL 716 + G W A+TTLGRV FNELLP YP+V M KK QA +INDLA +YPMI VAQTVDKL Sbjct: 660 QKGQTWTAETTLGRVQFNELLPWNYPYVEGVMDKKNQAVVINDLAAKYPMITVAQTVDKL 719 Query: 717 KDAGFYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVE 776 KDAGFYWATRSGVT++M DVLV P K+EILD YE +A ++EK+ RG +N ER ++LV+ Sbjct: 720 KDAGFYWATRSGVTITMHDVLVLPNKQEILDEYEAKAQRIEKKLARGKINESERYQSLVD 779 Query: 777 IWKEATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPV 836 +WKEATD VG+++ YP DNPI IV SGA GN Q LAGMKG+VTN +G++I RPV Sbjct: 780 LWKEATDFVGESVEKLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVTNSRGDYITRPV 839 Query: 837 KSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERG 896 K+SFREGL+VLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVRE DC T++G Sbjct: 840 KTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTKQG 899 Query: 897 IVVELAVRVPD------GSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEID 950 +V+++ V D G R ++ETS R L A+A+ G V+ G +G+ E+ Sbjct: 900 VVLDVCTPVLDANGEKTGEFARADFVETSVLGRFLAADAIGANGEVVCEAGTVIGELELA 959 Query: 951 ALLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQL 1010 L+ AG+ +K RSV+ +SMATGK V+IGEAVGIVAAQSIGEPGTQL Sbjct: 960 ELVKAGVETIKARSVMTCGTATGVCSTCYGKSMATGKKVEIGEAVGIVAAQSIGEPGTQL 1019 Query: 1011 TMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDD 1070 TMRTFH GGVG DITGGLPRVQELFEARVP+ K+PIA V G++++ED + F+ +TI+PDD Sbjct: 1020 TMRTFHLGGVGGDITGGLPRVQELFEARVPKAKSPIASVDGKIKIEDDDAFFTLTIIPDD 1079 Query: 1071 GGEEVVYDKLSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREV 1130 G EEVVY+KLSKRQ L G ER L DGD+V++GQQL++G+ADPHEVLRV G R V Sbjct: 1080 GSEEVVYEKLSKRQGLATL-GTGGVERPLRDGDHVKMGQQLLKGAADPHEVLRVMGRRGV 1138 Query: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESEN 1190 Q HL+ EVQ+VYR QGV+IHDKHIE+IVRQMLRRVT+IDSGSTE+LPGSL+D ++ + + Sbjct: 1139 QQHLINEVQKVYRDQGVAIHDKHIEIIVRQMLRRVTVIDSGSTEYLPGSLVDHSDAVAAS 1198 Query: 1191 RRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKE 1250 + V G P R +MGITKASLAT+SWLSAASFQETTRVLTDAAIN RSDKL GLKE Sbjct: 1199 KEAVKTGGRPVEVRAEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKE 1258 Query: 1251 NVIIGKLIPAGTGINRYRNIQVQPTEEARASAYTIPS-YEDQYYSPD-FGQATGAAVPLD 1308 NVIIGKLIPAGTGI RYRNIQVQPTEEARA+A+T+PS + D +Y + +G+ TGA+VPLD Sbjct: 1259 NVIIGKLIPAGTGIARYRNIQVQPTEEARAAAFTLPSTFGDGFYGDEGYGEFTGASVPLD 1318 Query: 1309 DYG 1311 D G Sbjct: 1319 DLG 1321 >tr|C0U8K2|C0U8K2_9ACTO Tax_Id=526225 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Geodermatophilus obscurus DSM 43160] Length = 1301 Score = 1830 bits (4741), Expect = 0.0 Identities = 936/1317 (71%), Positives = 1064/1317 (80%), Gaps = 23/1317 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+ +DIRQWS+GEVKKPETINYRTL+PEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLASGDDIRQWSHGEVKKPETINYRTLRPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIW+FKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAAY+IT+VD+E RH +L T+EAE+ E+ ++E +RDAD+EAR Sbjct: 121 APKDLEKIIYFAAYLITSVDDETRHRDLPTIEAEISAEKHNLESRRDADVEARQQKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK R+GGEREMRQLR+RAQRE+DRLE++ TF KL KQLI DE L Sbjct: 181 LAELEAEGAKSDVRRKVREGGEREMRQLRDRAQREIDRLEEVLDTFRKLEVKQLIADEGL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YREL DR+GEYF G MGA ++QKL+ DFD++AEA SLRE IR+GKGQ Sbjct: 241 YRELRDRFGEYFEGGMGAAALQKLLADFDLDAEAASLRETIRSGKGQRKLRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 F Q+ NSPMGMVLD VPVIPP+LRPMVQLDGGRFATSD+NDLYRRVINRNNRLKRL+DL Sbjct: 301 AFLQTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDMNDLYRRVINRNNRLKRLLDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVER R Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P VWDVLEEVI EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQ+HPLVC AFNADFDGDQ Sbjct: 481 PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPA GRP+ P DMV GLY+LTT V A Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPADGRPITAPTQDMVLGLYHLTTLVPSRHEA-- 598 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQV--RPPADIEARWFGANGWRP 658 D + Y S AEAIMA D+G L ++ + ++L +V + W W P Sbjct: 599 ----DGGQPAAYGSTAEAIMAFDKGALGLQERALIRLDEVFGVDNGKVNEPWEQPEDWAP 654 Query: 659 GDPWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD 718 G P + T+LGRV+FNE LP Y FVN Q+ KK AI+NDLAERYP + VA T+D LK Sbjct: 655 GQPALVRTSLGRVLFNEALPEDYRFVNYQVPKKELGAIVNDLAERYPKVQVAATLDALKS 714 Query: 719 AGFYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIW 778 AGF WATRSGVT+++ DV+ PP K+EILD +E A ++E+Q++RG + ER L+EIW Sbjct: 715 AGFRWATRSGVTIAIDDVVTPPAKQEILDRHEAEARQIERQYERGVITDAERRGELIEIW 774 Query: 779 KEATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKS 838 A EV QA+ D++P NP+ +V+SGA GN Q +AGM+GLV NPKGE IPRP+K+ Sbjct: 775 TRARAEVSQAMVDNFPTTNPVWVMVNSGARGNMMQISQIAGMRGLVANPKGEIIPRPIKA 834 Query: 839 SFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIV 898 +FREGL+VLEYFI+THGARKGLADTALRTADSGYLTRRLVDVSQDVI+RE DC TERG++ Sbjct: 835 NFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGVI 894 Query: 899 VELAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGIT 958 + +A V DG L R+ + ETS YAR L + V E G +I DLGD I AL+ AG++ Sbjct: 895 MPIATSV-DGVLTRDPHAETSVYARALATDVVAEDGTLIAQANSDLGDVLIQALVDAGVS 953 Query: 959 QVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQG 1018 +VKVR VL RS+ATGKLVD+GEAVGI+AAQSIGEPGTQLTMRTFH G Sbjct: 954 EVKVRCVLTCESLLGTCATCYGRSLATGKLVDVGEAVGIIAAQSIGEPGTQLTMRTFHTG 1013 Query: 1019 GV-GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVY 1077 GV GEDIT GLPRV ELFEARVP+GKAPIA++ G VR+EDGE+F K+TI PDDG +EVVY Sbjct: 1014 GVAGEDITHGLPRVVELFEARVPKGKAPIAELAGTVRIEDGEQFRKLTITPDDGSDEVVY 1073 Query: 1078 DKLSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVRE 1137 DKLS+R RLRV DG +VEVG+QL EG+ DPHEVLR+ GPREVQ+HLVRE Sbjct: 1074 DKLSRRSRLRV-----------EDGAHVEVGEQLTEGAVDPHEVLRIMGPREVQLHLVRE 1122 Query: 1138 VQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAES 1197 VQEVYR+QGVSIHDKHIEVI+RQML+RVTIIDSG+TEFLPG+L++R FE+ENRRVVAE Sbjct: 1123 VQEVYRSQGVSIHDKHIEVIIRQMLKRVTIIDSGATEFLPGALVERTLFETENRRVVAEG 1182 Query: 1198 GEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKL 1257 EPA+ RPVLMGITKASLAT+SWLSAASFQETT+VLTDAAI +SD L GLKENVIIGKL Sbjct: 1183 NEPASARPVLMGITKASLATESWLSAASFQETTKVLTDAAIQGKSDSLLGLKENVIIGKL 1242 Query: 1258 IPAGTGINRYRNIQVQPTEEARASAYTIPSYED-QYYSPD-FGQATGAAVPLDDYGY 1312 IPAGTGI+RYRNI V+PTEEARA+ YT+ Y+D QYYSPD FGQ +G AV L +Y + Sbjct: 1243 IPAGTGISRYRNITVEPTEEARAAVYTMAGYDDGQYYSPDVFGQGSGEAVRLKEYDW 1299 >sp|C4LL70|RPOC_CORK4 Tax_Id=645127 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Corynebacterium kroppenstedtii] Length = 1332 Score = 1820 bits (4713), Expect = 0.0 Identities = 929/1325 (70%), Positives = 1071/1325 (80%), Gaps = 14/1325 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVN FDELRIGLATA+DIR+WS+GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC Sbjct: 1 MLDVNLFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 CGKYKRVR+KGI+CERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 ACGKYKRVRYKGIVCERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFAA +IT+VDEE RH + TLEA++ +E+K VE RD +L R Sbjct: 121 APKDLEKIIYFAANIITSVDEEARHTDQETLEADIFMEKKEVEADRDEELAERQQKLEED 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 +RK ++ EREMR +RERA+RE+DRL++IW+TF KLAPKQ+IVDE + Sbjct: 181 LKELESNGAKADAKRKVQNAAEREMRHIRERAEREIDRLDEIWNTFIKLAPKQMIVDETI 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 Y ELVDRY +YFTG MGAE+IQ L+++FD+EAEAE L EVIR+GKGQ Sbjct: 241 YSELVDRYEDYFTGGMGAEAIQTLIKNFDLEAEAEKLSEVIRDGKGQKQVRALKRLRVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 F +SGN P MVLDA+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+IDL Sbjct: 301 AFLRSGNDPAAMVLDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVI+VGPQLKLHQCGLPKLMALELFKPFVMKRLV+ ++AQNI+SAKRMVERQR Sbjct: 421 RVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVEKSYAQNIRSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P+VWDVLEE IAEHPV+LNRAPTLHRLGIQAFEP+LVEGKAIQLHPL CEAFNADFDGDQ Sbjct: 481 PEVWDVLEEAIAEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVD----GDT 596 MAVHLPLSAEAQAEAR+LML+SNNILSPASG+PLAMPRLDMVTGLY+LT G Sbjct: 541 MAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYFLTLEKSEDQLGGE 600 Query: 597 GAYRPAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGW 656 GAY A E+ P+ G YSS AEA+MA DRGVL ++A I+V+++ +RPP DIEA F +GW Sbjct: 601 GAYHEADENGPKRGTYSSFAEALMARDRGVLGLQAPIEVRISHLRPPEDIEAELF-PDGW 659 Query: 657 RPGDPWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKL 716 + G W A TTLGR+MFNELLP YPFVN M KK QA IINDLA RYPMI VAQTVDK+ Sbjct: 660 QRGQKWTAHTTLGRIMFNELLPWNYPFVNGVMAKKAQAVIINDLAARYPMITVAQTVDKM 719 Query: 717 KDAGFYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVE 776 KDAGFYWATRS VT+SM DVLV P K+EIL YE++A +EK+ RG +N++ER +LV+ Sbjct: 720 KDAGFYWATRSCVTISMDDVLVLPNKEEILQRYEKQAATIEKKLARGKINNEERYRSLVD 779 Query: 777 IWKEATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPV 836 +WKE TD VG+++ YP DNPI IV SGA GN Q LAGMKG+VTN +G++I RP+ Sbjct: 780 LWKECTDFVGESVEKIYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVTNSRGDYITRPI 839 Query: 837 KSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERG 896 K+SFREGL+VLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVRE DC T +G Sbjct: 840 KTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTRKG 899 Query: 897 IVVELAVRVPD------GSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEID 950 + V++A V D G R ++ET+ R L +AV++ G+VI RG +GD E Sbjct: 900 LEVDVAKPVLDAEGNETGEFTRAEFLETALIGRYLAKDAVNDNGDVIYERGAFVGDAEAK 959 Query: 951 ALLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQL 1010 ++A G+ VR+V+ RSMATG+ VDIGEAVGIVAAQSIGEPGTQL Sbjct: 960 KMVAEGVRTATVRTVMMCETATGVCATCYGRSMATGQKVDIGEAVGIVAAQSIGEPGTQL 1019 Query: 1011 TMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDD 1070 TMRTFHQGGVG DITGGLPRVQELFEARVP+ +APIA G ++LED FY +TI PD+ Sbjct: 1020 TMRTFHQGGVGGDITGGLPRVQELFEARVPKNQAPIASTEGTIKLEDDGNFYTLTITPDN 1079 Query: 1071 GGEEVVYDKLSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREV 1130 G +EVVY+KLSKRQ L V + G E L GD+V GQ L+ G+ DPHEVLRV+G V Sbjct: 1080 GEDEVVYEKLSKRQGLAVTQEPGGFEHQLRTGDHVVTGQPLLRGAPDPHEVLRVEGVTGV 1139 Query: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESEN 1190 Q HL+ +VQ+VYR QGV+IHDKHIE+IVRQMLRR+T++DSGSTE LPGSLIDR E + N Sbjct: 1140 QKHLIEQVQKVYRDQGVAIHDKHIEIIVRQMLRRLTVVDSGSTELLPGSLIDRNEARAIN 1199 Query: 1191 RRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKE 1250 + V GE AA R +MGITKASLAT+SWLSAASFQETTRVLTDAAIN RSDKL GLKE Sbjct: 1200 KAVATNGGEGAAFRQEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKE 1259 Query: 1251 NVIIGKLIPAGTGINRYRNIQVQPTEEARASAYTI-PSYEDQYYSPD--FGQATGAAVPL 1307 NVIIGKLIPAGTGI+RYRNI V+PTEEARA A+++ SY D +Y D +G+ TGAAV L Sbjct: 1260 NVIIGKLIPAGTGISRYRNISVEPTEEARAQAFSMNTSYGDGFYGEDGAYGEFTGAAVRL 1319 Query: 1308 DDYGY 1312 DD G+ Sbjct: 1320 DDQGF 1324 >sp|Q0RRS9|RPOC_FRAAA Tax_Id=326424 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Frankia alni] Length = 1296 Score = 1819 bits (4711), Expect = 0.0 Identities = 922/1317 (70%), Positives = 1065/1317 (80%), Gaps = 33/1317 (2%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIRQWS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEK+IYFAAY+IT VD E RH +L TLEA M VE++ +ED+++AD+E R Sbjct: 121 APKDLEKVIYFAAYMITKVDAEARHRDLPTLEARMGVEKQQLEDKKNADVETRQKRLETD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK R+ EREMRQ+R+RAQR++D L+ ++ F + + L DE L Sbjct: 181 LAQLEAEGAKGDARRKVRESAEREMRQIRDRAQRKIDDLDRVFDRFKNMKVQDLEPDELL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YREL DR+G+YF G MGAE++Q+ + DFD+ AEAESLRE IR+GKGQ Sbjct: 241 YRELRDRFGQYFDGGMGAEALQRRLADFDLAAEAESLRETIRSGKGQKKARALKRLKVVS 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 F + NSPMGMVLD VPVIPP+LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRL+DL Sbjct: 301 AFLNTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSD+LKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVER R Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P VWDVLEEVI EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQ+HPLVC AFNADFDGDQ Sbjct: 481 PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMP LDMVTG+++L+T +G G Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPSLDMVTGVFHLSTLAEGAVG--- 597 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 E +SS AEA MA D ++++A+I V+L PP+D W W GD Sbjct: 598 -------EGRAFSSVAEAQMAFDAREIALQARISVRLRDTTPPSD----WVPPADWVTGD 646 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 + +TT GR + NE LP GYPF+N Q++KK QAAI+NDLAERYP I VA T+D LK AG Sbjct: 647 VFTLETTFGRCLLNEALPEGYPFINAQLNKKAQAAIVNDLAERYPKIQVAATLDALKSAG 706 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTV++ DV+ PP K EILD YE+RAD+V+KQF RG L+ +ER LV+IW E Sbjct: 707 FYWATRSGVTVAIEDVVAPPNKAEILDDYEQRADRVQKQFDRGFLSDEERRSELVQIWTE 766 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 AT+++ +A+ ++P NP+ +V+SGA GN Q R LAGM+GLV+NPKGE IPRP+K++F Sbjct: 767 ATNKIAEAMEKNFPQTNPVYVLVNSGAAGNMMQIRQLAGMRGLVSNPKGEIIPRPIKANF 826 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFI+THGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI+ Sbjct: 827 REGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCGTERGILTR 886 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 +A R DG L+R+ Y ETSAYARTL ++AVDE G +IV G D GD I ++ AGI V Sbjct: 887 IARRGADGVLVRDRYAETSAYARTLASDAVDEHGEIIVPAGTDAGDVAIGQIIEAGIESV 946 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 +VRS L RS+ATGKLVD+GEAVGIVAAQSIGEPGTQLTMRTFH GGV Sbjct: 947 RVRSALTCESRMGVCAQCYGRSLATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHSGGV 1006 Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079 G+DIT GLPRV ELFEAR P+GKAPI +V+GRV++E+ E+ +K+ +VPDDG EE+ Y Sbjct: 1007 AGDDITQGLPRVVELFEARSPKGKAPITEVSGRVKIEETEKTFKVVVVPDDGSEEIAY-P 1065 Query: 1080 LSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139 +S+R RLRV +GD +EVG Q+++G+ DPHEVLR+ GPR+VQ+HLV +VQ Sbjct: 1066 VSRRSRLRV-----------REGDRIEVGNQIVDGAVDPHEVLRILGPRQVQLHLVDQVQ 1114 Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGE 1199 EVYR+QGVSIHDKHIE+I+RQML+RV +++SG T LPG L +RA FESENRRVV G+ Sbjct: 1115 EVYRSQGVSIHDKHIEIIIRQMLKRVNVLESGETNLLPGELCERARFESENRRVVESGGQ 1174 Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 PA+ RPVLMGITKASLAT+SWLSAASFQETTRVLTDAAIN RSD L GLKENVIIGKLIP Sbjct: 1175 PASARPVLMGITKASLATESWLSAASFQETTRVLTDAAINARSDSLVGLKENVIIGKLIP 1234 Query: 1260 AGTGINRYRNIQVQPTEEARASAYTIPSYED----QYYSPDFGQATGAAVPLDDYGY 1312 AGTGI+RYRNI+V+PTEEARA+ Y++ +YED +Y + FG +G AVPLD++ Y Sbjct: 1235 AGTGISRYRNIRVEPTEEARAAMYSVGAYEDGGSVEYGA--FGTGSGQAVPLDEFDY 1289 >sp|Q6NJF6|RPOC_CORDI Tax_Id=1717 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Corynebacterium diphtheriae] Length = 1336 Score = 1818 bits (4710), Expect = 0.0 Identities = 932/1333 (69%), Positives = 1074/1333 (80%), Gaps = 25/1333 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 ++DVNFFDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC Sbjct: 1 MIDVNFFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLE+IIYFAA +IT+VD+E RH + +TLEAEM++E+K VE ++++ R Sbjct: 121 APKDLERIIYFAANIITSVDDEARHADQTTLEAEMLLEKKDVEADMESEIAERAAKLEED 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 R K + E+EM+ +RERA+RE+DRLE+IW TF KLAPKQ+I+DE + Sbjct: 181 LAELEAAGAKADARNKVKKAAEKEMQHIRERAEREIDRLEEIWQTFIKLAPKQMIIDETI 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 Y ELVDRY +YFTG MGAE+IQ L+++FD+++EAE LRE+I NGKGQ Sbjct: 241 YEELVDRYEDYFTGGMGAEAIQTLIRNFDLDSEAEELREIINNGKGQKKMRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ+SGN P GMVLD +PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+I+L Sbjct: 301 AFQRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIEL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVI+VGPQLKLH+CGLPKLMALELFKPFVMKRLV+ ++AQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENDYAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P+VWDVLEE I+EHPV+LNRAPTLHRLGIQAFEP LVEGKAIQLHPL CEAFNADFDGDQ Sbjct: 481 PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVD----GDT 596 MAVHLPLSAEAQAEARILML+SNNILSPASG+PLAMPRLDMVTGLYYLT + G Sbjct: 541 MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTMDKNENEIGGQ 600 Query: 597 GAYRPAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGW 656 GAY A E+ P GVYSS AEAIMA DRGVL ++AKIKV+++ +RPP DIEA F GW Sbjct: 601 GAYASATEEGPAQGVYSSYAEAIMARDRGVLGLQAKIKVRISHLRPPVDIEAEQF-PEGW 659 Query: 657 RPGDPWIADTTLGRVMFNELLPLGYPFVNKQMHKK-------VQAAIINDLAERYPMIVV 709 GD W+ADTTLGR+MFNELLP YP++ M +K + +INDLA YPMI V Sbjct: 660 NKGDVWLADTTLGRIMFNELLPWNYPYLEGVMVRKGGGTGKIMLGDVINDLAATYPMITV 719 Query: 710 AQTVDKLKDAGFYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQF-QRGALNHD 768 AQT+DK+KDAGFYWATRSGVT++M+DVLV P K+EILD YE A K+E+++ ++GAL Sbjct: 720 AQTMDKMKDAGFYWATRSGVTITMSDVLVLPNKEEILDRYEAEARKIERKYWEQGALTER 779 Query: 769 ERNEALVEIWKEATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPK 828 ER + LVE+WK+ATDEVG A+ YP DNPI IV SGA GN Q LAGMKG+V N K Sbjct: 780 ERYDRLVELWKDATDEVGNAVEKLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSK 839 Query: 829 GEFIPRPVKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE 888 G++I RP+K+SFREGL+VLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVRE Sbjct: 840 GDYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRE 899 Query: 889 HDCQTERGIVVELAVRVPDG-----SLIRELYIETSAYARTLGANAVDEAGNVIVARGED 943 DC T++GI V +AV V D IETS R D GNV+V GE+ Sbjct: 900 DDCGTKQGIRVPVAVEVKDAEGNVTGYTGHSLIETSVAGRVAATAVKDAEGNVMVEPGEN 959 Query: 944 LGDPEIDALLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSI 1003 L D ID L+AAG+ +VKVRSVL +SMATGKLVDIGEAVGIVAAQSI Sbjct: 960 LTDQLIDELIAAGVKEVKVRSVLTCQTPTGVCAKCYGKSMATGKLVDIGEAVGIVAAQSI 1019 Query: 1004 GEPGTQLTMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYK 1063 GEPGTQLTMRTFHQGGVG DITGGLPRVQELFEARVP+ +APIA V G V L+D FY Sbjct: 1020 GEPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGTVHLDDEGNFYT 1079 Query: 1064 ITIVPDDGGEEVVYDKLSKRQRLRVFKHADGS------ERVLSDGDYVEVGQQLMEGSAD 1117 +TI PDDG + VVY+KLSKRQ L + S ER L++GD+VEVG +L+ G AD Sbjct: 1080 LTINPDDGSDVVVYEKLSKRQGLATVRVPMESNPGAMIERTLAEGDHVEVGDRLLRGPAD 1139 Query: 1118 PHEVLRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLP 1177 PH+VL V G R V+ HLV EVQ+VYRAQGV+IHDKHIE+I+RQMLRR T+I+SGSTEFLP Sbjct: 1140 PHDVLEVLGRRGVEQHLVDEVQDVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLP 1199 Query: 1178 GSLIDRAEFESENRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAA 1237 G+L+D +E ++ N +A G+PA R +MGITKASLAT+SWLSAASFQETTRVLTDAA Sbjct: 1200 GTLVDLSEAKAANAEALANGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAA 1259 Query: 1238 INCRSDKLNGLKENVIIGKLIPAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD- 1296 IN RSDKL GLKENVIIGKLIPAGTGI+RYRNI V+PTE AR +AY+IP+Y D Y D Sbjct: 1260 INKRSDKLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYSIPTYGDSIYGDDG 1319 Query: 1297 FGQATGAAVPLDD 1309 +G+ TGA+VPLD+ Sbjct: 1320 YGEFTGASVPLDE 1332 >tr|C8NX30|C8NX30_9CORY Tax_Id=585529 (rpoC)SubName: Full=DNA-directed RNA polymerase, beta-prime subunit; EC=2.7.7.6;[Corynebacterium genitalium ATCC 33030] Length = 1336 Score = 1813 bits (4695), Expect = 0.0 Identities = 920/1333 (69%), Positives = 1072/1333 (80%), Gaps = 19/1333 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 + DVN FDELRIGLATAEDIR+WS+GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC Sbjct: 1 MFDVNLFDELRIGLATAEDIRRWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 SCGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLE+IIYFAA +IT+VDEE RHN++STLEAEM++E+K +E +A++ R Sbjct: 121 APKDLERIIYFAANIITSVDEEARHNDMSTLEAEMILEKKEIEQDTEAEIADRAQKLEED 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 R+K ++ ++EM+ +RE +RE++ L++IW+TF KLAPKQ+I+DENL Sbjct: 181 LAELEASGAAASARKKVQNAADKEMQHMREAGEREIEHLDEIWNTFIKLAPKQMIIDENL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 Y ELVDRY +YFTG MGAE+IQ L+++FD++AE+E LR +I GKGQ Sbjct: 241 YEELVDRYEDYFTGGMGAEAIQTLIRNFDLDAESEELRHIIAEGKGQKKVRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ+SGN P GM+LDA+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+IDL Sbjct: 301 AFQRSGNDPAGMILDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVI+VGPQLK+H+CGLPKLMALELFKPFVMKRLVD ++AQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIIVGPQLKMHECGLPKLMALELFKPFVMKRLVDNDYAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P+VWDVLEE IAEHPVLLNRAPTLHRLGIQAFEP+LVEGKAIQLHPL CEAFNADFDGDQ Sbjct: 481 PEVWDVLEEAIAEHPVLLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVD----GDT 596 MAVHLPLSAEAQAEAR+LMLSSNNILSPASG+PLAMPRLDMVTGLY+LT G Sbjct: 541 MAVHLPLSAEAQAEARVLMLSSNNILSPASGKPLAMPRLDMVTGLYFLTMVKGEGEIGGE 600 Query: 597 GAYRPAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGW 656 GAY PA E+ P GVYSS EAIMA DRGVL ++A IKV++ +RP A+IEA F +GW Sbjct: 601 GAYAPADENGPARGVYSSHREAIMAYDRGVLGLQAPIKVRIDHLRPTAEIEAEQF-PDGW 659 Query: 657 RPGDPWIADTTLGRVMFNELLPLGYPFVNKQMHKK------VQAAIINDLAERYPMIVVA 710 G W+ADTTLGR+MFNE+LP +P+ M +K + II + E+YPMI VA Sbjct: 660 EKGQSWMADTTLGRIMFNEMLPFNFPYQEGAMVRKGGKDKVLLGDIIQAMVEKYPMITVA 719 Query: 711 QTVDKLKDAGFYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVE-KQFQRGALNHDE 769 QT+DKLKDAGFYWATRSG+T++M+DVLV P K EILD YE A+ +E K F++GAL + Sbjct: 720 QTMDKLKDAGFYWATRSGITITMSDVLVLPNKTEILDEYEREAEAIERKYFEKGALTEKD 779 Query: 770 RNEALVEIWKEATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKG 829 R + LVE+W++ATD+VG+A+ YP DNPI IV SGA GN Q LAGMKG+V N +G Sbjct: 780 RYDRLVELWQDATDKVGKAVEALYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSRG 839 Query: 830 EFIPRPVKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREH 889 E+I RP+K+SFREGL+V+EYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVRE Sbjct: 840 EYITRPIKTSFREGLSVMEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREE 899 Query: 890 DCQTERGIVVELAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEI 949 DC T +G+ V +A G R +ETS R L ++A D GNV++ G DL + I Sbjct: 900 DCGTHQGVKVPVAEAAGTGRFNRHDLVETSVSGRVLASDATDADGNVLLEAGSDLSEERI 959 Query: 950 DALLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQ 1009 DAL+ AGI VKVRSVL +SMATGKLVDIGEAVGIVAAQSIGEPGTQ Sbjct: 960 DALVDAGIESVKVRSVLTCQTPTGVCAKCYGKSMATGKLVDIGEAVGIVAAQSIGEPGTQ 1019 Query: 1010 LTMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPD 1069 LTMRTFHQGGVG DITGGLPRVQELFEARVP+ +APIA V G + LED F+ +TI P+ Sbjct: 1020 LTMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGEISLEDEGNFWTLTIHPE 1079 Query: 1070 DGGEEVVYDKLSKRQRLRVFKHADGS------ERVLSDGDYVEVGQQLMEGSADPHEVLR 1123 DG ++VVY+KLSKRQ L + S ER L DGD V+VG +L+ G+ADPH+VL Sbjct: 1080 DGSDDVVYEKLSKRQGLAQVRRPMESNPEAMIERSLRDGDTVKVGDRLLRGAADPHDVLE 1139 Query: 1124 VQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDR 1183 V G R V+ HL+ EVQ VYR QGVSIHDKHIE+I+RQMLRR T+ID+GSTEFLPG+L+D Sbjct: 1140 VLGRRGVEKHLIDEVQAVYRTQGVSIHDKHIEIIIRQMLRRGTVIDAGSTEFLPGTLVDL 1199 Query: 1184 AEFESENRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSD 1243 +E N + VAE GEPA R +MGITKASLAT+SWLSAASFQETTRVLTDAAIN RSD Sbjct: 1200 SEARQINGQAVAEGGEPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSD 1259 Query: 1244 KLNGLKENVIIGKLIPAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD-FGQATG 1302 KL GLKENVIIGKLIPAGTGI+RYRNI V+PTE AR++AY+IP++ D Y + +G+ TG Sbjct: 1260 KLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARSAAYSIPTFGDAIYGDEGYGEFTG 1319 Query: 1303 AAVPLDDYGYSDY 1315 A+VPLD+YG Y Sbjct: 1320 ASVPLDEYGMGGY 1332 >sp|A8LC63|RPOC_FRASN Tax_Id=298653 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Frankia sp.] Length = 1296 Score = 1811 bits (4691), Expect = 0.0 Identities = 920/1324 (69%), Positives = 1070/1324 (80%), Gaps = 36/1324 (2%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIRQWS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEK+IYFAAY+IT VD + RH +L TLEA + VE++ +ED+++AD+E R Sbjct: 121 APKDLEKVIYFAAYMITKVDIDSRHRDLPTLEARIGVEKQQLEDKKNADVETRQRKLEED 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK R+ EREMRQ+R+R+QR++D L+ ++ F + + L DE L Sbjct: 181 LAQLEAEGAKGDARRKVRESAEREMRQIRDRSQRKIDDLDRVFDRFKNMKVQDLEPDELL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 +REL DR+G+YF G MGAE++Q + DFD+ AEAESLRE IR+GKGQ Sbjct: 241 FRELRDRFGQYFEGGMGAEALQHRLADFDLAAEAESLRETIRSGKGQKKARALKRLKVVS 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 F + NSPMGMVLD VPVIPP+LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRL+DL Sbjct: 301 AFLNTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSD+LKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVER R Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P VWDVLEEVI EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQ+HPLVC AFNADFDGDQ Sbjct: 481 PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMP LDMVTG+++L+ +G G Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPSLDMVTGVFHLSRVSEGAIG--- 597 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 E +SS AEA MA D + ++A+I+V+L + PPA+ W W PGD Sbjct: 598 -------EGRFFSSVAEAQMAFDAREIHLQARIQVRLRESTPPAE----WAPPADWLPGD 646 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 P+ +TT GR + NE LP GYPF+N Q++KK QAAI+NDLAERYP I VA T+D LK AG Sbjct: 647 PFTLETTFGRCLLNEALPEGYPFINAQLNKKAQAAIVNDLAERYPKIQVAATLDALKSAG 706 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTV++ DV+ PP K +ILD YE+RA++VEKQF RG L+ +ER LV+IW E Sbjct: 707 FYWATRSGVTVAIEDVVAPPNKAQILDEYEQRAERVEKQFGRGFLSDEERRSELVQIWTE 766 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 AT+++ +A+ ++P NP+ T+V+SGA GN Q R LAGM+GLV+NPKGE IPRP+K++F Sbjct: 767 ATNKIAEAMEANFPETNPVYTLVNSGAAGNMMQIRQLAGMRGLVSNPKGEIIPRPIKANF 826 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTV+EYFI+THGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI+ Sbjct: 827 REGLTVVEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCGTERGILTR 886 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 +A + PDG L+R+ Y ETSAYAR+L ++AVD G V+V G D GD I ++ AGI V Sbjct: 887 IARKGPDGVLVRDRYAETSAYARSLASDAVDAQGEVVVPAGADAGDVVIGQIIEAGIESV 946 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 +VRS L RS+ATGKLVD+GEAVGIVAAQSIGEPGTQLTMRTFH GGV Sbjct: 947 RVRSALTCESRMGVCAHCYGRSLATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHSGGV 1006 Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079 G+DIT GLPRV ELFEAR P+GKAPI++VTGRV++E+ E+ +K+ IVPDDG EE+ Y Sbjct: 1007 AGDDITQGLPRVVELFEARSPKGKAPISEVTGRVKIEETEKTFKVVIVPDDGSEEIAY-P 1065 Query: 1080 LSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139 +S+R RLRV +G+ VEVG QL++G+ DPHEVLR+ GPR+VQ+HLV +VQ Sbjct: 1066 VSRRSRLRV-----------REGERVEVGAQLIDGAVDPHEVLRILGPRQVQLHLVDQVQ 1114 Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGE 1199 EVYR+QGVSIHDKHIE+I+RQML+RV +++SG T LPG L++RA FE ENRRVV G+ Sbjct: 1115 EVYRSQGVSIHDKHIEIIIRQMLKRVNVLESGETTLLPGELVERARFEGENRRVVEIGGQ 1174 Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 PA+ RPVLMGITKASLAT+SWLSAASFQETTRVLTDAAIN RSD L GLKENVIIGKLIP Sbjct: 1175 PASARPVLMGITKASLATESWLSAASFQETTRVLTDAAINARSDSLVGLKENVIIGKLIP 1234 Query: 1260 AGTGINRYRNIQVQPTEEARASAYTIPSYED----QYYSPDFGQATGAAVPLDDYGY--- 1312 AGTGI+RYRNI+V+PT+EARA+ Y++ YED +Y + FG +G AVPLD++ Y Sbjct: 1235 AGTGISRYRNIRVEPTDEARAAMYSVSGYEDGASVEYGA--FGAGSGQAVPLDEFDYRSS 1292 Query: 1313 SDYR 1316 DYR Sbjct: 1293 GDYR 1296 >sp|Q2JFI4|RPOC_FRASC Tax_Id=106370 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Frankia sp.] Length = 1295 Score = 1811 bits (4691), Expect = 0.0 Identities = 917/1316 (69%), Positives = 1065/1316 (80%), Gaps = 32/1316 (2%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIRQWS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEK+IYFAAY+IT VD + RH +L TLEA + VE++ +ED+++AD+E R Sbjct: 121 APKDLEKVIYFAAYMITKVDTDARHRDLPTLEARIGVEKQQLEDKKNADVEVRQKRLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK R+ EREMRQLR+R QR++D L+ ++ F + + L DE L Sbjct: 181 LAQLEAEGAKGDARRKVRESAEREMRQLRDRVQRKIDDLDRVFDRFKNMKVQDLEPDELL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YREL DR+G YF G MGAE++Q+ + DFD+ AEAESLRE IR+GKGQ Sbjct: 241 YRELRDRFGAYFDGGMGAEALQRRLADFDLAAEAESLRETIRSGKGQKKARALKRLKVVS 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 F + NSPMGMVLD VPVIPP+LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRL+DL Sbjct: 301 AFLNTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSD+LKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVER R Sbjct: 421 RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P VWDVLEEVI EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQ+HPLVC AFNADFDGDQ Sbjct: 481 PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMP LDMVTG+++L+ +G G Sbjct: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPSLDMVTGVFHLSRLAEGALG--- 597 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 E +SS AEA MA D ++++AKI+V+L PP+D W W GD Sbjct: 598 -------EGRSFSSVAEAQMAFDAREVALQAKIRVRLRDTTPPSD----WVPPADWVTGD 646 Query: 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 + +TT GR + NE LP GYPF+N Q++KK QAAI+NDLAERYP I VA T+D LK AG Sbjct: 647 VFTLETTFGRCLLNEALPEGYPFINAQLNKKAQAAIVNDLAERYPKIQVAATLDALKSAG 706 Query: 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTV++ DV+ PP K EILD YE+RAD+V+KQF RG L+ +ER LV+IW E Sbjct: 707 FYWATRSGVTVAIEDVVAPPNKAEILDDYEQRADRVQKQFDRGFLSDEERRSELVQIWTE 766 Query: 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 AT+++ +A+ +++P NP+ +V+SGA GN Q R LAGM+GLV+NPKGE IPRP+K++F Sbjct: 767 ATNKIAEAMEENFPETNPVYVLVNSGAAGNMMQIRQLAGMRGLVSNPKGEIIPRPIKANF 826 Query: 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFI+THGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI+ Sbjct: 827 REGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCGTERGILTR 886 Query: 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 +A + DG L+R+ Y ETSAYARTL ++A+D G VIV G D GD I ++ AGI QV Sbjct: 887 IARKGADGVLVRDRYAETSAYARTLASDAIDANGEVIVPAGTDAGDVAISQIIEAGIEQV 946 Query: 961 KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 +VRS L RS+ATGKLVD+GEAVGIVAAQSIGEPGTQLTMRTFH GGV Sbjct: 947 RVRSALTCESRMGVCAQCYGRSLATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHSGGV 1006 Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079 G+DIT GLPRV ELFEAR P+GKAPI +V+GRV++E+ E+ +K+ +VPDDG +E+ Y Sbjct: 1007 AGDDITQGLPRVVELFEARSPKGKAPITEVSGRVKIEETEKTFKVVVVPDDGSDEIAY-P 1065 Query: 1080 LSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139 +S+R RLRV +GD++EVG Q+++G+ DPHEVLR+ GPR+VQ+HLV +VQ Sbjct: 1066 VSRRSRLRV-----------REGDHIEVGSQIVDGAVDPHEVLRILGPRQVQLHLVDQVQ 1114 Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGE 1199 EVYR+QGVSIHDKHIE+I+RQML+RV +++SG T LPG L +RA FE+ENRRVV G+ Sbjct: 1115 EVYRSQGVSIHDKHIEIIIRQMLKRVNVLESGDTTLLPGELCERARFEAENRRVVETGGQ 1174 Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 PA+ RPVLMGITKASLAT+SWLSAASFQETTRVLTDAAIN RSD L GLKENVIIGKLIP Sbjct: 1175 PASARPVLMGITKASLATESWLSAASFQETTRVLTDAAINARSDSLVGLKENVIIGKLIP 1234 Query: 1260 AGTGINRYRNIQVQPTEEARASAYTIPSYED---QYYSPDFGQATGAAVPLDDYGY 1312 AGTGI+RYRNI+V+PTEEARA+ Y++ +YED +Y + FG +G AVPLD++ Y Sbjct: 1235 AGTGISRYRNIRVEPTEEARAAMYSVGAYEDGGVEYGA--FGTGSGQAVPLDEFDY 1288 >tr|C4RBP6|C4RBP6_9ACTO Tax_Id=219305 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Micromonospora sp. ATCC 39149] Length = 1294 Score = 1807 bits (4680), Expect = 0.0 Identities = 910/1318 (69%), Positives = 1062/1318 (80%), Gaps = 26/1318 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIRQWS+GEVKKPETINYRTLKPEKDGLFCEKIFGP RDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTR+KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFA+YV+T+VD E RH +LST+E E++ E++ E+ RD+++E R Sbjct: 121 APKDLEKIIYFASYVVTSVDAESRHRDLSTIENEILAEKRQSENSRDSEIEKRAAKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK ++GGEREMRQ+R+RAQRE+DRL+++ TF KL PKQL+ DE L Sbjct: 181 LAELEAEGAKADVRRKVKEGGEREMRQIRDRAQREIDRLDEVLDTFRKLEPKQLVTDELL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YREL DR+GEYFTG MGAE+I+ L+Q+ D++AEAESLRE IR+GKGQ Sbjct: 241 YRELRDRFGEYFTGGMGAEAIKALVQNMDLDAEAESLRETIRSGKGQRKIRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 F + NSP+GMVLD VPVIPP+LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFLNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSD+LKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGP+LKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPKLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P VWDVLEEVI EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQ+HPLVC AFNADFDGDQ Sbjct: 481 PVVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVH+PLSAEAQAEARILMLSSNNIL PA G+P+ MP DMV GLY+LT G+ G Sbjct: 541 MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMVIGLYHLTHLTTGEKG--- 597 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLT-QVRPPADIEARWFGANGWRPG 659 E +SS AEA MA D G L ++A ++++L V W GW G Sbjct: 598 -------EGRAFSSDAEARMAFDAGELHLQAPVRIRLRGLVGVDNGAGEPWVAPEGWVEG 650 Query: 660 DPWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDA 719 +P +TTLGRV+FNE LP GY FVN ++ K +AI+NDLAER+P + +A T+D LK+A Sbjct: 651 EPLTVETTLGRVLFNETLPQGYRFVNYEIRKGQLSAIVNDLAERFPKVALAATLDGLKEA 710 Query: 720 GFYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWK 779 GF+WAT SGVT+ M DV+ PPRK+EIL+ YE+ AD+++KQ+QRG + +ER L+EIW Sbjct: 711 GFHWATWSGVTIGMEDVIAPPRKREILERYEKEADRIDKQYQRGLMTAEERRGELIEIWT 770 Query: 780 EATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSS 839 +AT+EV + + P +NP+ +++SGA GN Q R +A ++GLV NPKGE IPRP+K+S Sbjct: 771 KATNEVAKEMDTALPQENPLWKMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRPIKAS 830 Query: 840 FREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVV 899 +REGL+VLEYFI+THGARKGLADTALRTADSGYLTRRLVDVSQDVI+RE DC T+R I + Sbjct: 831 YREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPM 890 Query: 900 ELAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQ 959 ++ R DG L + ETS +ARTL + GN++ RG+D+ +DA++AAG Sbjct: 891 QIGER-RDGKLYVHEHAETSVHARTLADDIKGPDGNIVAHRGQDINSILVDAIVAAGTET 949 Query: 960 VKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGG 1019 V+VRSVL RS+ TGK VD+GEAVGI+AAQSIGEPGTQLTMRTFH GG Sbjct: 950 VRVRSVLTCESKLGVCGACYGRSLPTGKTVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGG 1009 Query: 1020 V-GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078 V GEDIT GLPRVQE+FEARVP+GKAPIAD GR+R+EDGER KI +VPDDG +E+VYD Sbjct: 1010 VAGEDITQGLPRVQEIFEARVPKGKAPIADTPGRIRIEDGERSRKIIVVPDDGSDEIVYD 1069 Query: 1079 KLSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138 K+SKR RLR DGD+VEVG++L EG+ DPHE+LR+ GPR VQ+HL +EV Sbjct: 1070 KISKRVRLRA-----------HDGDHVEVGEKLTEGTIDPHELLRILGPRAVQVHLTQEV 1118 Query: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESG 1198 QEVYR+QGV IHDKHIE+I+RQML+RVT+IDSGSTEFLPG L+DRA FESENRR+V+E G Sbjct: 1119 QEVYRSQGVLIHDKHIEIIIRQMLKRVTVIDSGSTEFLPGVLVDRALFESENRRLVSEGG 1178 Query: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAI+ RSD L GLKENVIIGKLI Sbjct: 1179 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAIHARSDSLIGLKENVIIGKLI 1238 Query: 1259 PAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 PAGTGI++YRN++V+PTEEA+A Y++ Y + Y FG A+G AVPLDD+ + YR Sbjct: 1239 PAGTGISKYRNVRVEPTEEAKAKVYSMTGYPETDYG--FGPASGQAVPLDDFDFGSYR 1294 >sp|Q8NT25|RPOC_CORGL Tax_Id=1718 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Corynebacterium glutamicum] Length = 1333 Score = 1805 bits (4675), Expect = 0.0 Identities = 920/1332 (69%), Positives = 1072/1332 (80%), Gaps = 24/1332 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVN FDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC Sbjct: 1 MLDVNVFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDL+ IIYF A +IT+VDEE RH++ +TLEAEM++E+K VE ++D+ R Sbjct: 121 APKDLDLIIYFGANIITSVDEEARHSDQTTLEAEMLLEKKDVEADAESDIAERAEKLEED 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK + ++EM+ +RERAQRE+DRL+++W TF KLAPKQ+I DE L Sbjct: 181 LAELEAAGAKADARRKVQAAADKEMQHIRERAQREIDRLDEVWQTFIKLAPKQMIRDEKL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 Y EL+DRY +YFTG MGAESI+ L+Q+FD++AEAE LR++I NGKGQ Sbjct: 241 YDELIDRYEDYFTGGMGAESIEALIQNFDLDAEAEELRDIINNGKGQKKMRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ+SGN P GMVL+A+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+I+L Sbjct: 301 AFQRSGNDPAGMVLNAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIEL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVI+VGPQL+LH+CGLPKLMALELFKPFVMKRLV+ +AQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P+VWDVLEE I+EHPV+LNRAPTLHRLGIQAFEP+LVEGKAIQLHPL CEAFNADFDGDQ Sbjct: 481 PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVD----GDT 596 MAVHLPLSAEAQAEAR+LML+SNNILSPASG+PLAMPRLDMVTGLYYLT G Sbjct: 541 MAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYYLTLEKSSEEFGGQ 600 Query: 597 GAYRPAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGW 656 GAY+PA E+ PE GVYSS AEAIMA DRGVL ++A ++++L +RPPA++EA F +GW Sbjct: 601 GAYQPADENGPEKGVYSSLAEAIMAYDRGVLGLQAPVRIRLNHLRPPAEVEAEQF-PDGW 659 Query: 657 RPGDPWIADTTLGRVMFNELLPLGYPFVNKQMHKK-------VQAAIINDLAERYPMIVV 709 G+ W+A TTLGRVMFNE+LP YP++ M +K + ++NDLA +YPMI V Sbjct: 660 NQGETWLAHTTLGRVMFNEILPWNYPYLEGVMVRKGGGSDKIMLGDVVNDLAAKYPMITV 719 Query: 710 AQTVDKLKDAGFYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDE 769 AQT+DK+KDAGFYW+TRSGVT++M+DVLV P K+E+LD YEE A ++E ++ RG L E Sbjct: 720 AQTMDKMKDAGFYWSTRSGVTIAMSDVLVLPNKEEMLDRYEESARQIEVKYNRGKLTGRE 779 Query: 770 RNEALVEIWKEATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKG 829 R + LVE+WK+ATDEVGQA+ D YP DNPI IV SGA GN Q LAGMKG+V N KG Sbjct: 780 RYDRLVELWKDATDEVGQAVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG 839 Query: 830 EFIPRPVKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREH 889 ++I RP+K+SFREGLTVLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVR Sbjct: 840 DYITRPIKTSFREGLTVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRVE 899 Query: 890 DCQTERGIVVELAVRVPDGS-----LIRELYIETSAYARTLGANAVDEAGNVIVARGEDL 944 DC T +G+ V +A V D + R IETS R L +A + AG V++A G DL Sbjct: 900 DCGTRQGVRVPVAAEVLDATGAVTGYTRHDLIETSVSGRVLAGDATNAAGEVVLAAGTDL 959 Query: 945 GDPEIDALLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIG 1004 + ID L+ AGI VKVRSVL +SMA+G+ VDIGEAVGIVAAQSIG Sbjct: 960 TELNIDLLVEAGIKDVKVRSVLTCQTPTGVCAKCYGKSMASGQQVDIGEAVGIVAAQSIG 1019 Query: 1005 EPGTQLTMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKI 1064 EPGTQLTMRTFHQGGVG DITGGLPRVQELFEARVP+ APIA V G + LED FY + Sbjct: 1020 EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNCAPIASVEGVIHLEDEGNFYTL 1079 Query: 1065 TIVPDDGGEEVVYDKLSKRQRLRVFKHADGS------ERVLSDGDYVEVGQQLMEGSADP 1118 TIVPDDG + VVY+KLSKRQ L + A S ER L++GD V VGQ+L+ G+ADP Sbjct: 1080 TIVPDDGSDNVVYEKLSKRQGLASTRVAMESNAGAFIERTLTEGDRVTVGQRLLRGAADP 1139 Query: 1119 HEVLRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPG 1178 H+VL + G R V+ HL+ EVQ VYRAQGV+IHDKHIE+I+RQMLRR T+I+SGSTEFLPG Sbjct: 1140 HDVLEILGRRGVEQHLIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPG 1199 Query: 1179 SLIDRAEFESENRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAI 1238 SL+D +E + N + G+PA R +MGITKASLAT+SWLSAASFQETTRVLTDAAI Sbjct: 1200 SLVDLSEAKLANSEAIGAGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAI 1259 Query: 1239 NCRSDKLNGLKENVIIGKLIPAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD-F 1297 N RSDKL GLKENVIIGKLIPAGTGI+RYRNI ++PTE AR +AY+IP+Y + Y D F Sbjct: 1260 NKRSDKLIGLKENVIIGKLIPAGTGISRYRNISIKPTEAARNAAYSIPTYGESIYGDDGF 1319 Query: 1298 GQATGAAVPLDD 1309 G+ TGA+VPLD+ Sbjct: 1320 GEFTGASVPLDE 1331 >sp|A4QBG3|RPOC_CORGB Tax_Id=340322 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Corynebacterium glutamicum] Length = 1333 Score = 1805 bits (4674), Expect = 0.0 Identities = 920/1332 (69%), Positives = 1072/1332 (80%), Gaps = 24/1332 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVN FDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC Sbjct: 1 MLDVNVFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDL+ IIYF A +IT+VDEE RH++ +TLEAEM++E+K VE ++D+ R Sbjct: 121 APKDLDLIIYFGANIITSVDEEARHSDQTTLEAEMLLEKKDVEADAESDIAERAEKLEED 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK + ++EM+ +RERAQRE+DRL+++W TF KLAPKQ+I DE L Sbjct: 181 LAELEAAGAKADARRKVQAAADKEMQHIRERAQREIDRLDEVWQTFIKLAPKQMIRDEKL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 Y EL+DRY +YFTG MGAESI+ L+Q+FD++AEAE LR++I NGKGQ Sbjct: 241 YDELIDRYEDYFTGGMGAESIEALIQNFDLDAEAEELRDIINNGKGQKKMRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ+SGN P GMVL+A+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+I+L Sbjct: 301 AFQRSGNDPAGMVLNAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIEL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVI+VGPQL+LH+CGLPKLMALELFKPFVMKRLV+ +AQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P+VWDVLEE I+EHPV+LNRAPTLHRLGIQAFEP+LVEGKAIQLHPL CEAFNADFDGDQ Sbjct: 481 PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVD----GDT 596 MAVHLPLSAEAQAEAR+LML+SNNILSPASG+PLAMPRLDMVTGLYYLT G Sbjct: 541 MAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYYLTLEKSSEEFGGQ 600 Query: 597 GAYRPAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGW 656 GAY+PA E+ PE GVYSS AEAIMA DRGVL ++A ++++L +RPPA++EA F +GW Sbjct: 601 GAYQPADENGPEKGVYSSLAEAIMAYDRGVLGLQAPVRIRLNHLRPPAEVEAEQF-PDGW 659 Query: 657 RPGDPWIADTTLGRVMFNELLPLGYPFVNKQMHKK-------VQAAIINDLAERYPMIVV 709 G+ W+A TTLGRVMFNE+LP YP++ M +K + ++NDLA +YPMI V Sbjct: 660 NQGETWLAHTTLGRVMFNEILPWNYPYLEGIMVRKGGGSDKIMLGDVVNDLAAKYPMITV 719 Query: 710 AQTVDKLKDAGFYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDE 769 AQT+DK+KDAGFYW+TRSGVT++M+DVLV P K+E+LD YEE A ++E ++ RG L E Sbjct: 720 AQTMDKMKDAGFYWSTRSGVTIAMSDVLVLPNKEEMLDRYEESARQIEVKYNRGKLTGRE 779 Query: 770 RNEALVEIWKEATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKG 829 R + LVE+WK+ATDEVGQA+ D YP DNPI IV SGA GN Q LAGMKG+V N KG Sbjct: 780 RYDRLVELWKDATDEVGQAVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG 839 Query: 830 EFIPRPVKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREH 889 ++I RP+K+SFREGLTVLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVR Sbjct: 840 DYITRPIKTSFREGLTVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRVE 899 Query: 890 DCQTERGIVVELAVRVPDGS-----LIRELYIETSAYARTLGANAVDEAGNVIVARGEDL 944 DC T +G+ V +A V D + R IETS R L +A + AG V++A G DL Sbjct: 900 DCGTRQGVRVPVAAEVLDATGAVTGYTRHDLIETSVSGRVLAGDATNAAGEVVLAAGTDL 959 Query: 945 GDPEIDALLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIG 1004 + ID L+ AGI VKVRSVL +SMA+G+ VDIGEAVGIVAAQSIG Sbjct: 960 TELNIDLLVEAGIKDVKVRSVLTCQTPTGVCAKCYGKSMASGQQVDIGEAVGIVAAQSIG 1019 Query: 1005 EPGTQLTMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKI 1064 EPGTQLTMRTFHQGGVG DITGGLPRVQELFEARVP+ APIA V G + LED FY + Sbjct: 1020 EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNCAPIASVEGVIHLEDEGNFYTL 1079 Query: 1065 TIVPDDGGEEVVYDKLSKRQRLRVFKHADGS------ERVLSDGDYVEVGQQLMEGSADP 1118 TIVPDDG + VVY+KLSKRQ L + A S ER L++GD V VGQ+L+ G+ADP Sbjct: 1080 TIVPDDGSDNVVYEKLSKRQGLASTRVAMESNAGAFIERTLTEGDRVTVGQRLLRGAADP 1139 Query: 1119 HEVLRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPG 1178 H+VL + G R V+ HL+ EVQ VYRAQGV+IHDKHIE+I+RQMLRR T+I+SGSTEFLPG Sbjct: 1140 HDVLEILGRRGVEQHLIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPG 1199 Query: 1179 SLIDRAEFESENRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAI 1238 SL+D +E + N + G+PA R +MGITKASLAT+SWLSAASFQETTRVLTDAAI Sbjct: 1200 SLVDLSEAKLANSEAIGAGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAI 1259 Query: 1239 NCRSDKLNGLKENVIIGKLIPAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD-F 1297 N RSDKL GLKENVIIGKLIPAGTGI+RYRNI ++PTE AR +AY+IP+Y + Y D F Sbjct: 1260 NKRSDKLIGLKENVIIGKLIPAGTGISRYRNISIKPTEAARNAAYSIPTYGESIYGDDGF 1319 Query: 1298 GQATGAAVPLDD 1309 G+ TGA+VPLD+ Sbjct: 1320 GEFTGASVPLDE 1331 >tr|C0XUK4|C0XUK4_9CORY Tax_Id=525263 (rpoC)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Corynebacterium lipophiloflavum DSM 44291] Length = 1332 Score = 1803 bits (4670), Expect = 0.0 Identities = 915/1332 (68%), Positives = 1075/1332 (80%), Gaps = 23/1332 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 + DVN FDELRIGLATA+DIR+WS+GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC Sbjct: 1 MFDVNLFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLE+IIYFAA +IT+VD+E RHN+LSTLEAEM++E+K VE ++++ R Sbjct: 121 APKDLERIIYFAANIITSVDDEARHNDLSTLEAEMILEKKEVEADANSEIAERAQKLEED 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 R+K + ++EM +R+ A+RE++RL+++W TF KLAPKQ+++DENL Sbjct: 181 LAELEAAGANASSRKKVQQAADKEMTHIRQAAEREVERLDEVWQTFVKLAPKQMVIDENL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 Y EL+DRY +YFTG MGAE+IQ L+++FD+EAEAE LR VI GKGQ Sbjct: 241 YEELMDRYEDYFTGGMGAEAIQTLIRNFDLEAEAEELRSVIAEGKGQKKVRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 F +SGN P GM+LDA+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+IDL Sbjct: 301 AFLRSGNDPAGMILDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVI+VGPQLKLH+CGLPKLMALELFKPFVMKRLVD ++AQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVDNDYAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P+VWDVLEE I+EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPL CEAFNADFDGDQ Sbjct: 481 PEVWDVLEEAISEHPVLLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLT-----TAVDGD 595 MAVHLPLSAEAQAEAR+LMLSSNNILSPASG+PLAMPRLDMVTGLY+LT T + G+ Sbjct: 541 MAVHLPLSAEAQAEARVLMLSSNNILSPASGKPLAMPRLDMVTGLYFLTMLKGGTEIGGE 600 Query: 596 TGAYRPAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANG 655 GAY PA E+ PE GVY+S EAIMA DRGVL ++A IKV++ +RP +IEA F +G Sbjct: 601 -GAYAPADENGPERGVYTSYREAIMAYDRGVLGLQAPIKVRIDHLRPTEEIEAELF-PDG 658 Query: 656 WRPGDPWIADTTLGRVMFNELLPLGYPFVNKQMHKK-------VQAAIINDLAERYPMIV 708 W G W+A+TTLGR++FNE+LP +P+ M +K + +I + E+YPMI Sbjct: 659 WEKGQSWMAETTLGRILFNEMLPFNFPYQEGAMVRKGGGSGKVLLGDVIQSMVEKYPMIT 718 Query: 709 VAQTVDKLKDAGFYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQF-QRGALNH 767 VAQT+DK+KDAGFYWATRSGVT+SM+DVLV P K E+L+ YE A+++E++F ++GAL Sbjct: 719 VAQTLDKMKDAGFYWATRSGVTISMSDVLVLPNKVEVLEQYEREAEEIERKFWEKGALTE 778 Query: 768 DERNEALVEIWKEATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNP 827 + R + LVE+W++AT++VGQA+ D YP DNPI IV SGA GN Q LAGMKG+V N Sbjct: 779 ENRYDRLVELWQDATNKVGQAVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNS 838 Query: 828 KGEFIPRPVKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVR 887 +GE+I RP+K+SFREGL+V+EYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVR Sbjct: 839 RGEYITRPIKTSFREGLSVMEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVR 898 Query: 888 EHDCQTERGIVVELAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDP 947 E DC T +G+ V +A +V D +R+ +ETS R + A+A D G V++ G DL + Sbjct: 899 EDDCGTHQGVKVPVARQVGD-KWVRDELVETSVSGRVVAADAKDADGTVVLEAGADLTEE 957 Query: 948 EIDALLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPG 1007 ID L+AAG+ +VKVRSVL +SMA+GKLVDIGEAVGIVAAQSIGEPG Sbjct: 958 NIDRLVAAGVAEVKVRSVLTCQTPTGVCAKCYGKSMASGKLVDIGEAVGIVAAQSIGEPG 1017 Query: 1008 TQLTMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIV 1067 TQLTMRTFHQGGVG DITGGLPRVQELFEARVP+ +APIA V G V LED F+ +TI Sbjct: 1018 TQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGTVTLEDEGNFWTLTIH 1077 Query: 1068 PDDGGEEVVYDKLSKRQRLRVFKHADGS------ERVLSDGDYVEVGQQLMEGSADPHEV 1121 PDDG + VVY+KLSKRQ L + S ER L +GD+VEVG +L+ G+ADPH+V Sbjct: 1078 PDDGSDVVVYEKLSKRQGLAQVRRPMESNPNAMIERSLREGDHVEVGDRLLRGAADPHDV 1137 Query: 1122 LRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLI 1181 L V G R V+ HL+ EVQ VYR QGVSIHDKHIE+I+RQMLRR +IDSG TEFLPG+L+ Sbjct: 1138 LEVLGRRGVEKHLIDEVQAVYRTQGVSIHDKHIEIIIRQMLRRGNVIDSGDTEFLPGTLV 1197 Query: 1182 DRAEFESENRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCR 1241 D AE N VA+ G+PA R +MGITKASLAT+SWLSAASFQETTRVLTDAAIN R Sbjct: 1198 DLAEARQVNAATVADGGQPAEMRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKR 1257 Query: 1242 SDKLNGLKENVIIGKLIPAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD-FGQA 1300 SDKL GLKENVIIGKLIPAGTGI RYRNIQV+PTE AR++AY IPS+ D Y D +G+ Sbjct: 1258 SDKLIGLKENVIIGKLIPAGTGIARYRNIQVKPTEAARSAAYAIPSFGDSIYGDDGYGEF 1317 Query: 1301 TGAAVPLDDYGY 1312 TGA+VPLD+YG+ Sbjct: 1318 TGASVPLDEYGF 1329 >sp|A8M538|RPOC_SALAI Tax_Id=391037 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Salinispora arenicola] Length = 1297 Score = 1802 bits (4667), Expect = 0.0 Identities = 908/1323 (68%), Positives = 1063/1323 (80%), Gaps = 33/1323 (2%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIRQWS+GEVKKPETINYRTLKPEKDGLFCEKIFGP RDWEC Sbjct: 1 MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTR+KVRRERMGHIELAA VTHIWYFKGVPSRLGYLLDL Sbjct: 61 YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAASVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLEKIIYFA+YV+T+VD E RH +L+T+E E++ E++ E+ RD+++E R Sbjct: 121 APKDLEKIIYFASYVVTSVDAEARHRDLATIENEILAEKRQSENSRDSEIEKRAGKLEAD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK ++GGEREMRQ+R+RAQRE+DRL+++ TF KL PKQL+ DE L Sbjct: 181 LAELEAEGAKADVRRKVKEGGEREMRQIRDRAQREIDRLDEVLDTFRKLEPKQLVTDELL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 YREL DR+GEYFTG MGAE+I+ L+Q+ D++AEAESLRE IR GKGQ Sbjct: 241 YRELRDRFGEYFTGGMGAEAIKALVQNMDLDAEAESLRETIRTGKGQRKIRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 F + NSP+GMVLD VPVIPP+LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct: 301 AFLNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSD+LKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGP+LKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIVVGPKLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P VWDVLEEVI EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQ+HPLVC AFNADFDGDQ Sbjct: 481 PVVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 MAVH+PLSAEAQAEARILMLSSNNIL PA G+P+ MP DM+ GLY+LT G+ G Sbjct: 541 MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMIIGLYHLTHRTSGERG--- 597 Query: 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQL-----TQVRPPADIEARWFGANG 655 E +SS AEA MA D G L ++A +K++L + P A+ W G Sbjct: 598 -------EGRAFSSDAEARMAFDNGELHLQAPVKIRLRGLVGVETGPGAE---SWTAPEG 647 Query: 656 WRPGDPWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDK 715 W GDP +TTLGRV+FNE LP GY FVN ++ K +AI+NDLAER+P + +A T+D Sbjct: 648 WVEGDPITVETTLGRVLFNEALPPGYRFVNYEIRKGQLSAIVNDLAERFPKVALAATLDG 707 Query: 716 LKDAGFYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALV 775 LK+AGF+WAT SGVT+ M DVL PPRK+E+LD YE+ AD+++KQ+QRG + +ER L+ Sbjct: 708 LKEAGFHWATWSGVTIGMEDVLAPPRKREVLDRYEKEADRIDKQYQRGLMTAEERRGELI 767 Query: 776 EIWKEATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRP 835 EIW +AT+EV + + P +NP+ +++SGA GN Q R +A ++GLV NPKGE IPRP Sbjct: 768 EIWTKATNEVAKEMDTALPQENPLWKMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRP 827 Query: 836 VKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTER 895 +K+S+REGL+VLEYFI+THGARKGLADTALRTADSGYLTRRLVDVSQDVI+RE DC T+R Sbjct: 828 IKASYREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDR 887 Query: 896 GIVVELAVRVPD-GSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLA 954 I +++ + + GSL+ + ETS +ARTL + G V+ RG D+ +D ++A Sbjct: 888 AIPMQVGQQTGEAGSLVVHEHAETSVHARTLADDIKGPDGTVVAERGADINSILVDRIVA 947 Query: 955 AGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRT 1014 AG+ V+VRSVL RS+ TGK VD+GEAVGI+AAQSIGEPGTQLTMRT Sbjct: 948 AGVESVRVRSVLTCESKLGVCGACYGRSLPTGKTVDVGEAVGIIAAQSIGEPGTQLTMRT 1007 Query: 1015 FHQGGV-GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGE 1073 FH GGV GEDIT GLPRVQE+FEAR+P+GKAPIAD GRVRLEDGER KI +VPDDG + Sbjct: 1008 FHTGGVAGEDITQGLPRVQEIFEARIPKGKAPIADTPGRVRLEDGERSRKIIVVPDDGSD 1067 Query: 1074 EVVYDKLSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIH 1133 E+VYDK+SKR RL + +DGD+VEVG++L G+ DPHE+LR+ GPR VQ+H Sbjct: 1068 EIVYDKISKRVRL-----------LANDGDHVEVGEKLTVGTIDPHELLRILGPRAVQVH 1116 Query: 1134 LVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRV 1193 L +EVQEVYR+QGV IHDKHIE+I+RQML+RVT+IDSGSTEFLPG L+DRA FESENRR+ Sbjct: 1117 LTQEVQEVYRSQGVLIHDKHIEIIIRQMLKRVTVIDSGSTEFLPGVLVDRALFESENRRL 1176 Query: 1194 VAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVI 1253 V+E GEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAI+ RSD L GLKENVI Sbjct: 1177 VSEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAIHARSDSLIGLKENVI 1236 Query: 1254 IGKLIPAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYS 1313 IGKLIPAGTGI++YRN++V+PTEEA+A Y++ Y + Y FG A+G AVPLDD+ + Sbjct: 1237 IGKLIPAGTGISKYRNVRVEPTEEAKAKVYSMTGYPETDYG--FGPASGQAVPLDDFDFG 1294 Query: 1314 DYR 1316 YR Sbjct: 1295 SYR 1297 >sp|Q8FS96|RPOC_COREF Tax_Id=152794 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Corynebacterium efficiens] Length = 1333 Score = 1802 bits (4667), Expect = 0.0 Identities = 925/1332 (69%), Positives = 1065/1332 (79%), Gaps = 24/1332 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVN FDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC Sbjct: 1 MLDVNVFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDL+ IIYF A +IT+VDEE RH++ STLEAEM++E+K VE ++++ R Sbjct: 121 APKDLDLIIYFGANIITSVDEEARHSDQSTLEAEMLLEKKDVEADAESEIAERAEKLEED 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK ++ E+EM+ +RERA+RE+DRLE+IW TF KLAPKQ+I DE L Sbjct: 181 LAELEAAGAKADARRKVQNAAEKEMQHIRERAEREIDRLEEIWQTFIKLAPKQMIRDEKL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 Y ELVDRY +YFTG MGAESIQ L++ FD++AEAE LR +I GKGQ Sbjct: 241 YDELVDRYEDYFTGGMGAESIQTLIRGFDLDAEAEELRTIINEGKGQKKMRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ+SGN P GMVL+A+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+I+L Sbjct: 301 AFQRSGNDPAGMVLNAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIEL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVI+VGPQL+LH+CGLPKLMALELFKPFVMKRLV+ +AQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P+VWDVLEE I+EHPV+LNRAPTLHRLGIQAFEP+LVEGKAIQLHPL CEAFNADFDGDQ Sbjct: 481 PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVD----GDT 596 MAVHLPLSAEAQAEARILML+SNNILSPASG+PLAMPRLDMVTGLYYLT G Sbjct: 541 MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTLKKSPEEFGGQ 600 Query: 597 GAYRPAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGW 656 GAY+PA E+ PE GVYSS AEAIMA DRGVL ++A ++++L +RPPA++E F GW Sbjct: 601 GAYQPADENGPEKGVYSSYAEAIMAYDRGVLGLQAPVRIRLDHLRPPAELENELF-PEGW 659 Query: 657 RPGDPWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAA-------IINDLAERYPMIVV 709 GD W+A+TTLGRVMFNE+LP YP++ M +K A ++NDLA RYPMI V Sbjct: 660 NQGDTWLAETTLGRVMFNEILPWNYPYLEGIMVRKGGGADKIMLGDVVNDLAARYPMITV 719 Query: 710 AQTVDKLKDAGFYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDE 769 AQT+DK+KDAGFYW+TRSGVT++M+DVLV P K EILD YE A ++E ++ RG L E Sbjct: 720 AQTMDKMKDAGFYWSTRSGVTIAMSDVLVLPNKDEILDRYEAAARQIETKYNRGKLTGRE 779 Query: 770 RNEALVEIWKEATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKG 829 R + LVE+WK+ATDEVGQA+ D YP DNPI IV SGA GN Q LAGMKG+V N KG Sbjct: 780 RYDRLVELWKDATDEVGQAVEDIYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG 839 Query: 830 EFIPRPVKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREH 889 ++I RP+K+SFREGLTVLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVR Sbjct: 840 DYITRPIKTSFREGLTVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRVE 899 Query: 890 DCQTERGIVVELAVRVPDGS-----LIRELYIETSAYARTLGANAVDEAGNVIVARGEDL 944 DC T +G+ V +A V D + R IETS R L +A + G VI+A G DL Sbjct: 900 DCGTRQGVRVPVAAEVLDATGAVSGYTRHDLIETSVSGRVLAGDATNAEGEVILAAGSDL 959 Query: 945 GDPEIDALLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIG 1004 + ID L+ AGI QVKVRSVL +SMA+GK VDIGEAVGIVAAQSIG Sbjct: 960 TELNIDLLVEAGIQQVKVRSVLTCQTPTGVCAKCYGKSMASGKQVDIGEAVGIVAAQSIG 1019 Query: 1005 EPGTQLTMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKI 1064 EPGTQLTMRTFHQGGVG DITGGLPRVQELFEARVP+ APIA G + LED FY + Sbjct: 1020 EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNLAPIASADGVIHLEDEGNFYTL 1079 Query: 1065 TIVPDDGGEEVVYDKLSKRQRLRVFK------HADGSERVLSDGDYVEVGQQLMEGSADP 1118 T+VPDDG + VVYDKLSKRQ L + A ER L++GD+V VG +L+ G+A P Sbjct: 1080 TLVPDDGSDNVVYDKLSKRQGLASIRVPMEHNPAAFIERTLAEGDHVTVGTRLLRGAAAP 1139 Query: 1119 HEVLRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPG 1178 H+VL V G R V+ HL+ EVQ VYRAQGV+IHDKHIE+I+RQMLRR T+I+SGSTEFLPG Sbjct: 1140 HDVLEVLGRRGVEQHLIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPG 1199 Query: 1179 SLIDRAEFESENRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAI 1238 SL+D +E + N +A G+PA R +MGITKASLAT+SWLSAASFQETTRVLTDAAI Sbjct: 1200 SLVDLSEAKLANSEAIANGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAI 1259 Query: 1239 NCRSDKLNGLKENVIIGKLIPAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD-F 1297 N RSDKL GLKENVIIGKLIPAGTGI+RYRNI ++PTE AR +AY+IP+Y + Y D F Sbjct: 1260 NKRSDKLIGLKENVIIGKLIPAGTGISRYRNISIKPTEAARNAAYSIPTYGESIYGDDGF 1319 Query: 1298 GQATGAAVPLDD 1309 G+ TGA+VPLD+ Sbjct: 1320 GEFTGASVPLDE 1331 >tr|C8NSA9|C8NSA9_COREF Tax_Id=196164 (rpoC)SubName: Full=DNA-directed RNA polymerase, beta-prime subunit; EC=2.7.7.6;[Corynebacterium efficiens YS-314] Length = 1333 Score = 1802 bits (4667), Expect = 0.0 Identities = 925/1332 (69%), Positives = 1065/1332 (79%), Gaps = 24/1332 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVN FDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC Sbjct: 1 MLDVNVFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDL+ IIYF A +IT+VDEE RH++ STLEAEM++E+K VE ++++ R Sbjct: 121 APKDLDLIIYFGANIITSVDEEARHSDQSTLEAEMLLEKKDVEADAESEIAERAEKLEED 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK ++ E+EM+ +RERA+RE+DRLE+IW TF KLAPKQ+I DE L Sbjct: 181 LAELEAAGAKADARRKVQNAAEKEMQHIRERAEREIDRLEEIWQTFIKLAPKQMIRDEKL 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 Y ELVDRY +YFTG MGAESIQ L++ FD++AEAE LR +I GKGQ Sbjct: 241 YDELVDRYEDYFTGGMGAESIQTLIRGFDLDAEAEELRTIINEGKGQKKMRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 FQ+SGN P GMVL+A+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+I+L Sbjct: 301 AFQRSGNDPAGMVLNAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIEL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVI+VGPQL+LH+CGLPKLMALELFKPFVMKRLV+ +AQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P+VWDVLEE I+EHPV+LNRAPTLHRLGIQAFEP+LVEGKAIQLHPL CEAFNADFDGDQ Sbjct: 481 PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVD----GDT 596 MAVHLPLSAEAQAEARILML+SNNILSPASG+PLAMPRLDMVTGLYYLT G Sbjct: 541 MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTLKKSPEEFGGQ 600 Query: 597 GAYRPAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGW 656 GAY+PA E+ PE GVYSS AEAIMA DRGVL ++A ++++L +RPPA++E F GW Sbjct: 601 GAYQPADENGPEKGVYSSYAEAIMAYDRGVLGLQAPVRIRLDHLRPPAELENELF-PEGW 659 Query: 657 RPGDPWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAA-------IINDLAERYPMIVV 709 GD W+A+TTLGRVMFNE+LP YP++ M +K A ++NDLA RYPMI V Sbjct: 660 NQGDTWLAETTLGRVMFNEILPWNYPYLEGIMVRKGGGADKIMLGDVVNDLAARYPMITV 719 Query: 710 AQTVDKLKDAGFYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDE 769 AQT+DK+KDAGFYW+TRSGVT++M+DVLV P K EILD YE A ++E ++ RG L E Sbjct: 720 AQTMDKMKDAGFYWSTRSGVTIAMSDVLVLPNKDEILDRYEAAARQIETKYNRGKLTGRE 779 Query: 770 RNEALVEIWKEATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKG 829 R + LVE+WK+ATDEVGQA+ D YP DNPI IV SGA GN Q LAGMKG+V N KG Sbjct: 780 RYDRLVELWKDATDEVGQAVEDIYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG 839 Query: 830 EFIPRPVKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREH 889 ++I RP+K+SFREGLTVLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVR Sbjct: 840 DYITRPIKTSFREGLTVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRVE 899 Query: 890 DCQTERGIVVELAVRVPDGS-----LIRELYIETSAYARTLGANAVDEAGNVIVARGEDL 944 DC T +G+ V +A V D + R IETS R L +A + G VI+A G DL Sbjct: 900 DCGTRQGVRVPVAAEVLDATGAVSGYTRHDLIETSVSGRVLAGDATNAEGEVILAAGSDL 959 Query: 945 GDPEIDALLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIG 1004 + ID L+ AGI QVKVRSVL +SMA+GK VDIGEAVGIVAAQSIG Sbjct: 960 TELNIDLLVEAGIQQVKVRSVLTCQTPTGVCAKCYGKSMASGKQVDIGEAVGIVAAQSIG 1019 Query: 1005 EPGTQLTMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKI 1064 EPGTQLTMRTFHQGGVG DITGGLPRVQELFEARVP+ APIA G + LED FY + Sbjct: 1020 EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNLAPIASADGVIHLEDEGNFYTL 1079 Query: 1065 TIVPDDGGEEVVYDKLSKRQRLRVFK------HADGSERVLSDGDYVEVGQQLMEGSADP 1118 T+VPDDG + VVYDKLSKRQ L + A ER L++GD+V VG +L+ G+A P Sbjct: 1080 TLVPDDGSDNVVYDKLSKRQGLASIRVPMEHNPAAFIERTLAEGDHVTVGTRLLRGAAAP 1139 Query: 1119 HEVLRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPG 1178 H+VL V G R V+ HL+ EVQ VYRAQGV+IHDKHIE+I+RQMLRR T+I+SGSTEFLPG Sbjct: 1140 HDVLEVLGRRGVEQHLIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPG 1199 Query: 1179 SLIDRAEFESENRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAI 1238 SL+D +E + N +A G+PA R +MGITKASLAT+SWLSAASFQETTRVLTDAAI Sbjct: 1200 SLVDLSEAKLANSEAIANGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAI 1259 Query: 1239 NCRSDKLNGLKENVIIGKLIPAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD-F 1297 N RSDKL GLKENVIIGKLIPAGTGI+RYRNI ++PTE AR +AY+IP+Y + Y D F Sbjct: 1260 NKRSDKLIGLKENVIIGKLIPAGTGISRYRNISIKPTEAARNAAYSIPTYGESIYGDDGF 1319 Query: 1298 GQATGAAVPLDD 1309 G+ TGA+VPLD+ Sbjct: 1320 GEFTGASVPLDE 1331 >sp|C3PKN2|RPOC_CORA7 Tax_Id=548476 (rpoC)RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta';[Corynebacterium aurimucosum] Length = 1331 Score = 1798 bits (4656), Expect = 0.0 Identities = 918/1329 (69%), Positives = 1071/1329 (80%), Gaps = 22/1329 (1%) Query: 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 + DVN FDELRIGLATAEDIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC Sbjct: 1 MFDVNLFDELRIGLATAEDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60 Query: 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct: 61 ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query: 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARXXXXXXX 180 APKDLE+IIYFAA +IT+VDEE RHN+ STLEAEM++E+K VED +A++ R Sbjct: 121 APKDLERIIYFAANIITSVDEEARHNDQSTLEAEMLLEKKDVEDDVEAEIAERAAKLEQD 180 Query: 181 XXXXXXXXXXXXXRRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 RRK ++ ++EM+ +RER +RE+ RL++IW+TF KLAPKQ+I+DE + Sbjct: 181 LAELEAAGAKADARRKVQNAADKEMQHIRERGEREVARLDEIWNTFIKLAPKQMIIDETI 240 Query: 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQXXXXXXXXXXXXX 300 Y ELVDRY +YFTG MGAE+IQ L+++FD+EAEAE L+E+I NGKGQ Sbjct: 241 YEELVDRYEDYFTGGMGAEAIQTLIRNFDLEAEAEELKEIINNGKGQKKMRALKRLKVVA 300 Query: 301 XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 F +SGN P GMVLDA+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+IDL Sbjct: 301 AFLRSGNDPAGMVLDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL 360 Query: 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct: 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query: 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVI+VGPQLKLH+CGLPKLMALELFKPFVMKRLV+ ++AQNIKSAKRMVERQR Sbjct: 421 RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENDYAQNIKSAKRMVERQR 480 Query: 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P+VWDVLEE I+EHPV+LNRAPTLHRLGIQAFEP LVEGKAIQLHPL CEAFNADFDGDQ Sbjct: 481 PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ 540 Query: 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVD----GDT 596 MAVHLPLSAEAQAEAR+LML+SNNILSPASG+PLAMPRLDMVTGLYYLT G Sbjct: 541 MAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYYLTMDKGEDEIGGE 600 Query: 597 GAYRPAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGW 656 G Y+PA EDRPE GVYSS AEAIMA DRGVL ++A IKV+++ +RPP+DIEA F +GW Sbjct: 601 GRYQPATEDRPEQGVYSSYAEAIMARDRGVLGLQAPIKVRISHLRPPSDIEAEQF-PDGW 659 Query: 657 RPGDPWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAA-------IINDLAERYPMIVV 709 + G W+A+TTLGR+MFN+LLP YP++ M +K A +INDLA +YPMI V Sbjct: 660 QKGQAWLAETTLGRIMFNDLLPWNYPYLEGVMVRKGGAGNKMLLGDVINDLAAKYPMITV 719 Query: 710 AQTVDKLKDAGFYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQF-QRGALNHD 768 AQ +DK+KDAGFYWATRSGVT++M DVLV P K E+L+ YE+ A+++E+++ ++GAL Sbjct: 720 AQVLDKMKDAGFYWATRSGVTITMHDVLVLPNKTEVLESYEKEAERIERKYWEQGALTER 779 Query: 769 ERNEALVEIWKEATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPK 828 ER + LVE+WK+ATD VG A+ + YP DNPI IV SGA GN Q LAGMKG+V N K Sbjct: 780 ERYDRLVELWKDATDTVGNAVEEMYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSK 839 Query: 829 GEFIPRPVKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE 888 G++I RP+K+SFREGL+VLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVRE Sbjct: 840 GDYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRE 899 Query: 889 HDCQTERGIVVELAVRVPDGSL-IRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDP 947 DC T +G+ V L + V GS + EL+ ETSA R + + DE G VI G DL + Sbjct: 900 EDCGTRQGVRVPLGIEVAPGSYDLHELW-ETSASGRVVANDVKDENGEVIAEAGTDLTEE 958 Query: 948 EIDALLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPG 1007 ++ AG+ ++KVRSVL +SMA+G+LVDIGEAVGIVAAQSIGEPG Sbjct: 959 LSRTIVNAGVLEIKVRSVLTCQTPAGVCAKCYGKSMASGQLVDIGEAVGIVAAQSIGEPG 1018 Query: 1008 TQLTMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIV 1067 TQLTMRTFHQGGVG DITGGLPRVQELFEAR P+ +APIA V G V L D F+ +TI Sbjct: 1019 TQLTMRTFHQGGVGGDITGGLPRVQELFEARNPKNRAPIASVDGTVSLSDEGNFWTLTIT 1078 Query: 1068 PDDGGEEVVYDKLSKRQRLRVFKHADGS------ERVLSDGDYVEVGQQLMEGSADPHEV 1121 PDDG + VVY+KLSKRQ L + S ER L DGD+V G +LM G+ DPH+V Sbjct: 1079 PDDGSDNVVYEKLSKRQGLAQVRRPMESNPDAMIERSLRDGDHVSTGDRLMRGAPDPHDV 1138 Query: 1122 LRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLI 1181 L V G R V+ HL+ EVQ VYRAQGV+IHDKHIE+I+RQMLRR T+ID+G+T+ LPG+LI Sbjct: 1139 LEVLGRRGVEKHLIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIDAGTTDLLPGNLI 1198 Query: 1182 DRAEFESENRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCR 1241 D +E + N VAE G+PA R +MGITKASLAT+SWLSAASFQETTRVLTDAAIN R Sbjct: 1199 DLSEAKQVNAAQVAEGGQPAQLRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKR 1258 Query: 1242 SDKLNGLKENVIIGKLIPAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPD-FGQA 1300 SD+L GLKENVIIGKLIPAGTGI+RYRNI V+PTE AR +AY+IP+Y D Y D FG+ Sbjct: 1259 SDQLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYSIPTYGDSIYGDDGFGEF 1318 Query: 1301 TGAAVPLDD 1309 TGA+VPL++ Sbjct: 1319 TGASVPLEE 1327 Database: Amellifera_nr Posted date: Jan 15, 2010 5:10 AM Number of letters in database: 3,808,957,724 Number of sequences in database: 11,153,314 Lambda K H 0.319 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11153314 Number of Hits to DB: 9,350,848,899 Number of extensions: 398716843 Number of successful extensions: 1020094 Number of sequences better than 10.0: 8643 Number of HSP's gapped: 1006127 Number of HSP's successfully gapped: 15303 Length of query: 1316 Length of database: 3,808,957,724 Length adjustment: 150 Effective length of query: 1166 Effective length of database: 2,135,960,624 Effective search space: 2490530087584 Effective search space used: 2490530087584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits)