BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ML1891c (1178 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,153,314 sequences; 3,808,957,724 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P30760|RPOB_MYCLE Tax_Id=1769 (rpoB)RecName: Full=DNA-directe... 2206 0.0 sp|B8ZSC7|RPOB_MYCLB Tax_Id=561304 (rpoB)RecName: Full=DNA-direc... 2206 0.0 tr|B0Z0K7|B0Z0K7_9MYCO Tax_Id=480418 (rpoB)RecName: Full=DNA-dir... 2164 0.0 tr|C7E3Q1|C7E3Q1_9MYCO Tax_Id=29311 (rpoB)RecName: Full=DNA-dire... 2121 0.0 sp|Q73SE4|RPOB_MYCPA Tax_Id=1770 (rpoB)RecName: Full=DNA-directe... 2108 0.0 sp|A0QL49|RPOB_MYCA1 Tax_Id=243243 (rpoB)RecName: Full=DNA-direc... 2108 0.0 sp|P0A680|RPOB_MYCTU Tax_Id=1773 (rpoB)RecName: Full=DNA-directe... 2100 0.0 sp|A1KGE7|RPOB_MYCBP Tax_Id=410289 (rpoB)RecName: Full=DNA-direc... 2100 0.0 sp|P0A681|RPOB_MYCBO Tax_Id=1765 (rpoB)RecName: Full=DNA-directe... 2100 0.0 tr|A4KEZ1|A4KEZ1_MYCTU Tax_Id=395095 RecName: Full=DNA-directed ... 2100 0.0 sp|A5U052|RPOB_MYCTA Tax_Id=419947 (rpoB)RecName: Full=DNA-direc... 2098 0.0 tr|A5WK35|A5WK35_MYCTF Tax_Id=336982 RecName: Full=DNA-directed ... 2097 0.0 tr|C6DU47|C6DU47_MYCTK Tax_Id=478434 RecName: Full=DNA-directed ... 2094 0.0 tr|C1AL00|C1AL00_MYCBT Tax_Id=561275 (rpoB)RecName: Full=DNA-dir... 2088 0.0 sp|B2HSJ3|RPOB_MYCMM Tax_Id=216594 (rpoB)RecName: Full=DNA-direc... 2084 0.0 sp|A0PM24|RPOB_MYCUA Tax_Id=362242 (rpoB)RecName: Full=DNA-direc... 2081 0.0 tr|A1XM12|A1XM12_9MYCO Tax_Id=35617 (rpoB)RecName: Full=DNA-dire... 2080 0.0 tr|Q2M4T9|Q2M4T9_9MYCO Tax_Id=319709 (rpoB)RecName: Full=DNA-dir... 2052 0.0 tr|Q6X0L8|Q6X0L8_9MYCO Tax_Id=134601 RecName: Full=DNA-directed ... 2047 0.0 tr|D0EL37|D0EL37_9MYCO Tax_Id=212194 (rpoB)SubName: Full=DNA-dir... 2046 0.0 tr|Q6YI61|Q6YI61_MYCFO Tax_Id=1766 (rpoB)RecName: Full=DNA-direc... 2046 0.0 tr|Q6YI64|Q6YI64_9MYCO Tax_Id=53462 (rpoB)RecName: Full=DNA-dire... 2045 0.0 tr|Q6X0L6|Q6X0L6_9MYCO Tax_Id=1796 RecName: Full=DNA-directed RN... 2044 0.0 tr|Q6YI60|Q6YI60_MYCFO Tax_Id=1766 (rpoB)RecName: Full=DNA-direc... 2044 0.0 tr|Q2M4U0|Q2M4U0_9MYCO Tax_Id=451644 (rpoB)RecName: Full=DNA-dir... 2043 0.0 tr|Q6YI68|Q6YI68_MYCFO Tax_Id=1766 (rpoB)RecName: Full=DNA-direc... 2043 0.0 tr|Q6X0L1|Q6X0L1_9MYCO Tax_Id=59750 RecName: Full=DNA-directed R... 2043 0.0 sp|A3PV78|RPOB_MYCSJ Tax_Id=164757 (rpoB)RecName: Full=DNA-direc... 2042 0.0 tr|Q6X0L7|Q6X0L7_9MYCO Tax_Id=39693 RecName: Full=DNA-directed R... 2042 0.0 tr|Q6X0L2|Q6X0L2_9MYCO Tax_Id=1802 RecName: Full=DNA-directed RN... 2042 0.0 tr|Q6X0L9|Q6X0L9_MYCSM Tax_Id=1772 RecName: Full=DNA-directed RN... 2040 0.0 sp|P60281|RPOB_MYCS2 Tax_Id=246196 (rpoB)RecName: Full=DNA-direc... 2038 0.0 sp|Q1BDF0|RPOB_MYCSS Tax_Id=164756 (rpoB)RecName: Full=DNA-direc... 2037 0.0 sp|A1UBJ3|RPOB_MYCSK Tax_Id=189918 (rpoB)RecName: Full=DNA-direc... 2037 0.0 tr|Q6YI67|Q6YI67_MYCPR Tax_Id=43304 (rpoB)RecName: Full=DNA-dire... 2037 0.0 tr|Q6YI66|Q6YI66_9MYCO Tax_Id=98668 (rpoB)RecName: Full=DNA-dire... 2034 0.0 sp|A1T4J2|RPOB_MYCVP Tax_Id=350058 (rpoB)RecName: Full=DNA-direc... 2028 0.0 sp|A4T1P4|RPOB_MYCGI Tax_Id=350054 (rpoB)RecName: Full=DNA-direc... 2017 0.0 tr|Q6YI70|Q6YI70_MYCCH Tax_Id=1774 (rpoB)RecName: Full=DNA-direc... 1998 0.0 tr|Q6X0L5|Q6X0L5_9MYCO Tax_Id=83262 RecName: Full=DNA-directed R... 1996 0.0 tr|Q6X0L4|Q6X0L4_MYCCH Tax_Id=1774 RecName: Full=DNA-directed RN... 1995 0.0 tr|Q2M4U3|Q2M4U3_9MYCO Tax_Id=319705 (rpoB)RecName: Full=DNA-dir... 1995 0.0 tr|Q2M4U2|Q2M4U2_9MYCO Tax_Id=319706 (rpoB)RecName: Full=DNA-dir... 1995 0.0 tr|Q6YI62|Q6YI62_9MYCO Tax_Id=56689 (rpoB)RecName: Full=DNA-dire... 1995 0.0 tr|Q5QGG0|Q5QGG0_9MYCO Tax_Id=281216 (rpoB)RecName: Full=DNA-dir... 1995 0.0 tr|Q2M4U1|Q2M4U1_9MYCO Tax_Id=319707 (rpoB)RecName: Full=DNA-dir... 1995 0.0 tr|Q6X0L3|Q6X0L3_MYCAB Tax_Id=36809 RecName: Full=DNA-directed R... 1994 0.0 tr|B1MH62|B1MH62_MYCA9 Tax_Id=561007 RecName: Full=DNA-directed ... 1993 0.0 tr|Q6YI69|Q6YI69_MYCAB Tax_Id=36809 (rpoB)RecName: Full=DNA-dire... 1993 0.0 tr|Q6YI63|Q6YI63_9MYCO Tax_Id=56689 (rpoB)RecName: Full=DNA-dire... 1992 0.0 >sp|P30760|RPOB_MYCLE Tax_Id=1769 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium leprae] Length = 1178 Score = 2206 bits (5715), Expect = 0.0 Identities = 1122/1178 (95%), Positives = 1123/1178 (95%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCILPDFGQSKTD GAPNRISFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILPDFGQSKTDVSPSQSRPQSSPNNSVPGAPNRISFAKLREPLEVPGLLDVQTDS 60 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE Sbjct: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL Sbjct: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP Sbjct: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP Sbjct: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESASIEDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASIEDLA 1178 >sp|B8ZSC7|RPOB_MYCLB Tax_Id=561304 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium leprae] Length = 1178 Score = 2206 bits (5715), Expect = 0.0 Identities = 1122/1178 (95%), Positives = 1123/1178 (95%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCILPDFGQSKTD GAPNRISFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILPDFGQSKTDVSPSQSRPQSSPNNSVPGAPNRISFAKLREPLEVPGLLDVQTDS 60 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE Sbjct: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL Sbjct: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP Sbjct: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP Sbjct: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESASIEDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASIEDLA 1178 >tr|B0Z0K7|B0Z0K7_9MYCO Tax_Id=480418 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium lepromatosis] Length = 1178 Score = 2164 bits (5607), Expect = 0.0 Identities = 1100/1176 (93%), Positives = 1109/1176 (94%) Query: 3 EGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDSFE 62 +GCILPDF QSKT GAPNRISFAKL EPLEVPGLLDVQTDSFE Sbjct: 3 KGCILPDFAQSKTGVSPSQSRPQSSPNNSVPGAPNRISFAKLHEPLEVPGLLDVQTDSFE 62 Query: 63 WLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVEEC 122 WLIGSP WRAAA SRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPV+EC Sbjct: 63 WLIGSPLWRAAATSRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 122 Query: 123 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 182 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVV+SQLVRS Sbjct: 123 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVISQLVRS 182 Query: 183 PGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 242 PGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 183 PGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 242 Query: 243 WTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 302 WTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 243 WTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 302 Query: 303 EKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGGVE 362 EKRYDLARVGRYKVNKKLGLHAGE ITSSTLTEEDVVATIEYLVRLHEGQSTMTV GGVE Sbjct: 303 EKRYDLARVGRYKVNKKLGLHAGEQITSSTLTEEDVVATIEYLVRLHEGQSTMTVLGGVE 362 Query: 363 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 422 +PVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINIRP Sbjct: 363 LPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRP 422 Query: 423 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 482 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR Sbjct: 423 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 482 Query: 483 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVA 542 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVA Sbjct: 483 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVA 542 Query: 543 QANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDA 602 QANSPID+ G FLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 543 QANSPIDKDGCFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDA 602 Query: 603 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITVMA 662 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVV+AEKSGVIEEVSADYITVMA Sbjct: 603 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVIAEKSGVIEEVSADYITVMA 662 Query: 663 DDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVA 722 DDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVA Sbjct: 663 DDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVA 722 Query: 723 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 782 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 723 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 782 Query: 783 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 842 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 783 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 842 Query: 843 ESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 902 ESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE Sbjct: 843 ESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 902 Query: 903 DMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLPEE 962 DMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAKSGWKIDVA G+PDWAVNLPEE Sbjct: 903 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWKIDVAAGMPDWAVNLPEE 962 Query: 963 LLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFPYP 1022 LLHA PNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMV GDGKAVLFDGRSGEPFPYP Sbjct: 963 LLHAKPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVDGDGKAVLFDGRSGEPFPYP 1022 Query: 1023 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1082 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1023 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1082 Query: 1083 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1142 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1083 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1142 Query: 1143 AAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 A+I ANLGINLSRNESASIEDLA Sbjct: 1143 ASIELRESEDEDLERAAANLGINLSRNESASIEDLA 1178 >tr|C7E3Q1|C7E3Q1_9MYCO Tax_Id=29311 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium haemophilum] Length = 1182 Score = 2121 bits (5496), Expect = 0.0 Identities = 1084/1180 (91%), Positives = 1097/1180 (92%), Gaps = 4/1180 (0%) Query: 3 EGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDSFE 62 EG I PDFGQ+KTD GAPNRISFAKLREPLEVPGLLDVQTDSFE Sbjct: 3 EGGIFPDFGQNKTDVSPSQSRPQSSSNNSVPGAPNRISFAKLREPLEVPGLLDVQTDSFE 62 Query: 63 WLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVEEC 122 WLIGSP WRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPV+EC Sbjct: 63 WLIGSPRWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 122 Query: 123 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 182 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 123 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 182 Query: 183 PGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 242 PGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 183 PGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 242 Query: 243 WTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 302 WTSEQI ERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 243 WTSEQIIERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 302 Query: 303 EKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGGVE 362 EKRYDLARVGRYKVNKKLGLHAGE ITSSTLTEE+VVATIEYLVRLHEGQSTMTVPGGVE Sbjct: 303 EKRYDLARVGRYKVNKKLGLHAGEPITSSTLTEEEVVATIEYLVRLHEGQSTMTVPGGVE 362 Query: 363 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 422 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINIRP Sbjct: 363 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRP 422 Query: 423 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 482 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR Sbjct: 423 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 482 Query: 483 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVA 542 MCPIETPEGP IGLIGS SVYARVNPFGFIETPYRKVVDGVV+D+IEYLTADEEDRHVVA Sbjct: 483 MCPIETPEGPKIGLIGSWSVYARVNPFGFIETPYRKVVDGVVTDDIEYLTADEEDRHVVA 542 Query: 543 QANSPIDEAGR----FLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLE 598 QANSP + G F EPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLE Sbjct: 543 QANSPTKDNGAGAQVFAEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLE 602 Query: 599 HDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYI 658 HDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVAEKSGVIEEVSADYI Sbjct: 603 HDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKSGVIEEVSADYI 662 Query: 659 TVMADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKN 718 TVMADDGTRRTYRMRKFARSNHGTCANQSPIVD+GDRVEAGQVIADGPCTENGEMALGKN Sbjct: 663 TVMADDGTRRTYRMRKFARSNHGTCANQSPIVDSGDRVEAGQVIADGPCTENGEMALGKN 722 Query: 719 LLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSD 778 LLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSD Sbjct: 723 LLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSD 782 Query: 779 EVLADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLK 838 EVLADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKA EVRDTSLK Sbjct: 783 EVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAPEVRDTSLK 842 Query: 839 VPHGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKI 898 V HGES KVI IRVFS ED+D+ PAGVNELV VYVAQKRKISDGDKLAGRHGNKGVIGKI Sbjct: 843 VAHGESEKVIAIRVFSREDEDDFPAGVNELVGVYVAQKRKISDGDKLAGRHGNKGVIGKI 902 Query: 899 LPAEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVN 958 LPAEDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAKSGWKIDVAGG+P+WA N Sbjct: 903 LPAEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWKIDVAGGMPEWAAN 962 Query: 959 LPEELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEP 1018 LP ELLHA PNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMV GDGKAVLFDGRSGEP Sbjct: 963 LPAELLHAEPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVDGDGKAVLFDGRSGEP 1022 Query: 1019 FPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA 1078 FPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA Sbjct: 1023 FPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA 1082 Query: 1079 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL 1138 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL Sbjct: 1083 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL 1142 Query: 1139 SSDGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 SSDGAAI ANLGINLSRNESAS+EDLA Sbjct: 1143 SSDGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1182 >sp|Q73SE4|RPOB_MYCPA Tax_Id=1770 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium paratuberculosis] Length = 1175 Score = 2108 bits (5463), Expect = 0.0 Identities = 1075/1178 (91%), Positives = 1090/1178 (92%), Gaps = 3/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL DF QSKTD GAPNR+SFAKLREPLEVPGLLDVQ DS Sbjct: 1 MLEGCILADFRQSKTDRPQSSSNGSSSLNGSVPGAPNRVSFAKLREPLEVPGLLDVQIDS 60 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWLIG+P WR AA +RGD +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 61 FEWLIGAPRWREAAIARGDAEPKGGLEEVLDELSPIEDFSGSMSLSFSDPRFDEVKAPVD 120 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQITERFGFSEIM STLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTNEQITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGLHAGE ITSSTLTEEDVVATIEYLVRLHEGQ TMTVPGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHAGEPITSSTLTEEDVVATIEYLVRLHEGQPTMTVPGG 360 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 +EVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 IEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+DEI YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIHYLTADEEDRHV 540 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID+ GRF E RVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDDKGRFAEARVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVAEKSGVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKSGVIEEVSADYITV 660 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTR TYRMRKF RSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL Sbjct: 661 MADDGTRHTYRMRKFERSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAKSGW ID G P+WAVNLP Sbjct: 901 QEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNID---GNPEWAVNLP 957 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 EEL HA PNQIVSTPVFDGAKEEEL G+LS TLPNRDG+VMV GDGKAVLFDGRSGEPFP Sbjct: 958 EELRHAQPNQIVSTPVFDGAKEEELAGMLSCTLPNRDGEVMVDGDGKAVLFDGRSGEPFP 1017 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1018 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1077 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1078 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1137 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1138 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1175 >sp|A0QL49|RPOB_MYCA1 Tax_Id=243243 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium avium] Length = 1175 Score = 2108 bits (5463), Expect = 0.0 Identities = 1075/1178 (91%), Positives = 1090/1178 (92%), Gaps = 3/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL DF QSKTD GAPNR+SFAKLREPLEVPGLLDVQ DS Sbjct: 1 MLEGCILADFRQSKTDRPQSSSNGSSSLNGSVPGAPNRVSFAKLREPLEVPGLLDVQIDS 60 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWLIG+P WR AA +RGD +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 61 FEWLIGAPRWREAAIARGDAEPKGGLEEVLDELSPIEDFSGSMSLSFSDPRFDEVKAPVD 120 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQITERFGFSEIM STLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTNEQITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGLHAGE ITSSTLTEEDVVATIEYLVRLHEGQ TMTVPGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHAGEPITSSTLTEEDVVATIEYLVRLHEGQPTMTVPGG 360 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 +EVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 IEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+DEI YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIHYLTADEEDRHV 540 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID+ GRF E RVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDDKGRFAEARVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVAEKSGVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKSGVIEEVSADYITV 660 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTR TYRMRKF RSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL Sbjct: 661 MADDGTRHTYRMRKFERSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAKSGW ID G P+WAVNLP Sbjct: 901 QEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNID---GNPEWAVNLP 957 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 EEL HA PNQIVSTPVFDGAKEEEL G+LS TLPNRDG+VMV GDGKAVLFDGRSGEPFP Sbjct: 958 EELRHAQPNQIVSTPVFDGAKEEELAGMLSCTLPNRDGEVMVDGDGKAVLFDGRSGEPFP 1017 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1018 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1077 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1078 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1137 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1138 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1175 >sp|P0A680|RPOB_MYCTU Tax_Id=1773 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium tuberculosis] Length = 1178 Score = 2100 bits (5440), Expect = 0.0 Identities = 1066/1178 (90%), Positives = 1089/1178 (92%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL D QSKT GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWLIGSP WR +AA RGD+ PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPV+ Sbjct: 61 FEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVD 120 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKST+KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWTSEQI ERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGLH GE ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHV 540 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID GRF+EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVAE+SGVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITV 660 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 M D+GTRRTYRMRKFARSNHGTCANQ PIVDAGDRVEAGQVIADGPCT++GEMALGKNLL Sbjct: 661 MHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL 720 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEV 780 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS ED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFL DGTPVDIILNTHGVPRRMN+GQILETHLGW A SGWK+D A G+PDWA LP Sbjct: 901 VEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP 960 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 +ELL A PN IVSTPVFDGA+E ELQGLLS TLPNRDGDV+V DGKA+LFDGRSGEPFP Sbjct: 961 DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFP 1020 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1178 >sp|A1KGE7|RPOB_MYCBP Tax_Id=410289 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium bovis] Length = 1178 Score = 2100 bits (5440), Expect = 0.0 Identities = 1066/1178 (90%), Positives = 1089/1178 (92%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL D QSKT GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWLIGSP WR +AA RGD+ PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPV+ Sbjct: 61 FEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVD 120 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKST+KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWTSEQI ERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGLH GE ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHV 540 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID GRF+EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVAE+SGVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITV 660 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 M D+GTRRTYRMRKFARSNHGTCANQ PIVDAGDRVEAGQVIADGPCT++GEMALGKNLL Sbjct: 661 MHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL 720 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEV 780 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS ED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFL DGTPVDIILNTHGVPRRMN+GQILETHLGW A SGWK+D A G+PDWA LP Sbjct: 901 VEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP 960 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 +ELL A PN IVSTPVFDGA+E ELQGLLS TLPNRDGDV+V DGKA+LFDGRSGEPFP Sbjct: 961 DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFP 1020 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1178 >sp|P0A681|RPOB_MYCBO Tax_Id=1765 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium bovis] Length = 1178 Score = 2100 bits (5440), Expect = 0.0 Identities = 1066/1178 (90%), Positives = 1089/1178 (92%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL D QSKT GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWLIGSP WR +AA RGD+ PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPV+ Sbjct: 61 FEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVD 120 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKST+KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWTSEQI ERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGLH GE ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHV 540 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID GRF+EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVAE+SGVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITV 660 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 M D+GTRRTYRMRKFARSNHGTCANQ PIVDAGDRVEAGQVIADGPCT++GEMALGKNLL Sbjct: 661 MHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL 720 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEV 780 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS ED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFL DGTPVDIILNTHGVPRRMN+GQILETHLGW A SGWK+D A G+PDWA LP Sbjct: 901 VEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP 960 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 +ELL A PN IVSTPVFDGA+E ELQGLLS TLPNRDGDV+V DGKA+LFDGRSGEPFP Sbjct: 961 DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFP 1020 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1178 >tr|A4KEZ1|A4KEZ1_MYCTU Tax_Id=395095 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium tuberculosis str. Haarlem] Length = 1178 Score = 2100 bits (5440), Expect = 0.0 Identities = 1066/1178 (90%), Positives = 1089/1178 (92%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL D QSKT GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWLIGSP WR +AA RGD+ PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPV+ Sbjct: 61 FEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVD 120 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKST+KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWTSEQI ERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGLH GE ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHV 540 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID GRF+EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVAE+SGVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITV 660 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 M D+GTRRTYRMRKFARSNHGTCANQ PIVDAGDRVEAGQVIADGPCT++GEMALGKNLL Sbjct: 661 MHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL 720 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEV 780 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS ED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFL DGTPVDIILNTHGVPRRMN+GQILETHLGW A SGWK+D A G+PDWA LP Sbjct: 901 VEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP 960 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 +ELL A PN IVSTPVFDGA+E ELQGLLS TLPNRDGDV+V DGKA+LFDGRSGEPFP Sbjct: 961 DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFP 1020 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1178 >sp|A5U052|RPOB_MYCTA Tax_Id=419947 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium tuberculosis] Length = 1177 Score = 2098 bits (5437), Expect = 0.0 Identities = 1065/1177 (90%), Positives = 1088/1177 (92%) Query: 2 LEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDSF 61 +EGCIL D QSKT GAPNR+SFAKLREPLEVPGLLDVQTDSF Sbjct: 1 MEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF 60 Query: 62 EWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVEE 121 EWLIGSP WR +AA RGD+ PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPV+E Sbjct: 61 EWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDE 120 Query: 122 CKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVR 181 CKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVR Sbjct: 121 CKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVR 180 Query: 182 SPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL 241 SPGVYFDETIDKST+KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL Sbjct: 181 SPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL 240 Query: 242 GWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFF 301 GWTSEQI ERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFF Sbjct: 241 GWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFF 300 Query: 302 KEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGGV 361 KEKRYDLARVGRYKVNKKLGLH GE ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGGV Sbjct: 301 KEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGV 360 Query: 362 EVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIR 421 EVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINIR Sbjct: 361 EVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIR 420 Query: 422 PVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYG 481 PVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYG Sbjct: 421 PVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYG 480 Query: 482 RMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVV 541 RMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHVV Sbjct: 481 RMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVV 540 Query: 542 AQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDD 601 AQANSPID GRF+EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHDD Sbjct: 541 AQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDD 600 Query: 602 ANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITVM 661 ANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVAE+SGVIEEVSADYITVM Sbjct: 601 ANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVM 660 Query: 662 ADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLV 721 D+GTRRTYRMRKFARSNHGTCANQ PIVDAGDRVEAGQVIADGPCT++GEMALGKNLLV Sbjct: 661 HDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLV 720 Query: 722 AIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVL 781 AIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVL Sbjct: 721 AIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVL 780 Query: 782 ADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPH 841 ADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPH Sbjct: 781 ADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPH 840 Query: 842 GESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPA 901 GESGKVIGIRVFS ED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 GESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPV 900 Query: 902 EDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLPE 961 EDMPFL DGTPVDIILNTHGVPRRMN+GQILETHLGW A SGWK+D A G+PDWA LP+ Sbjct: 901 EDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPD 960 Query: 962 ELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFPY 1021 ELL A PN IVSTPVFDGA+E ELQGLLS TLPNRDGDV+V DGKA+LFDGRSGEPFPY Sbjct: 961 ELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPY 1020 Query: 1022 PVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGA 1081 PVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGA Sbjct: 1021 PVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGA 1080 Query: 1082 AYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSD 1141 AYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSD Sbjct: 1081 AYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSD 1140 Query: 1142 GAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 GAAI ANLGINLSRNESAS+EDLA Sbjct: 1141 GAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1177 >tr|A5WK35|A5WK35_MYCTF Tax_Id=336982 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium tuberculosis] Length = 1178 Score = 2097 bits (5434), Expect = 0.0 Identities = 1065/1178 (90%), Positives = 1088/1178 (92%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL D QSKT GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWLIGSP WR +AA RGD+ PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPV+ Sbjct: 61 FEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVD 120 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKST+KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWTSEQI ERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGLH GE ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRL ALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLLALGPGGLSRERAGLEVRDVHPSHY 480 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHV 540 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID GRF+EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVAE+SGVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITV 660 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 M D+GTRRTYRMRKFARSNHGTCANQ PIVDAGDRVEAGQVIADGPCT++GEMALGKNLL Sbjct: 661 MHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL 720 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEV 780 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS ED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFL DGTPVDIILNTHGVPRRMN+GQILETHLGW A SGWK+D A G+PDWA LP Sbjct: 901 VEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP 960 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 +ELL A PN IVSTPVFDGA+E ELQGLLS TLPNRDGDV+V DGKA+LFDGRSGEPFP Sbjct: 961 DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFP 1020 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1178 >tr|C6DU47|C6DU47_MYCTK Tax_Id=478434 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium tuberculosis] Length = 1178 Score = 2094 bits (5426), Expect = 0.0 Identities = 1064/1178 (90%), Positives = 1088/1178 (92%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL D QSKT GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWLIGSP WR +AA RGD+ PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPV+ Sbjct: 61 FEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVD 120 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKST+KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWTSEQI ERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGLH GE ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFM QNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMYQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGP+IGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPSIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHV 540 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID GRF+EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVAE+SGVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITV 660 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 M D+GTRRTYRMRKFARSNHGTCANQ PIVDAGDRVEAGQVIADGPCT++GEMALGKNLL Sbjct: 661 MHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL 720 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEV 780 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS ED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFL DGTPVDIILNTHGVPRRMN+GQILETHLGW A SGWK+D A G+PDWA LP Sbjct: 901 VEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP 960 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 +ELL A PN IVSTPVFDGA+E ELQGLLS TLPNRDGDV+V DGKA+LFDGRSGEPFP Sbjct: 961 DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFP 1020 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1178 >tr|C1AL00|C1AL00_MYCBT Tax_Id=561275 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium bovis] Length = 1172 Score = 2088 bits (5409), Expect = 0.0 Identities = 1060/1172 (90%), Positives = 1083/1172 (92%) Query: 7 LPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDSFEWLIG 66 + D QSKT GAPNR+SFAKLREPLEVPGLLDVQTDSFEWLIG Sbjct: 1 MADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60 Query: 67 SPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKD 126 SP WR +AA RGD+ PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPV+ECKDKD Sbjct: 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120 Query: 127 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 186 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY Sbjct: 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180 Query: 187 FDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 246 FDETIDKST+KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE Sbjct: 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240 Query: 247 QITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 306 QI ERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY Sbjct: 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300 Query: 307 DLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVE 366 DLARVGRYKVNKKLGLH GE ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGGVEVPVE Sbjct: 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360 Query: 367 TDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRPVVAA 426 TDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINIRPVVAA Sbjct: 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420 Query: 427 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 486 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI Sbjct: 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480 Query: 487 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANS 546 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHVVAQANS Sbjct: 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540 Query: 547 PIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 606 PID GRF+EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL Sbjct: 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600 Query: 607 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGT 666 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVAE+SGVIEEVSADYITVM D+GT Sbjct: 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660 Query: 667 RRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPW 726 RRTYRMRKFARSNHGTCANQ PIVDAGDRVEAGQVIADGPCT++GEMALGKNLLVAIMPW Sbjct: 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720 Query: 727 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 786 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE Sbjct: 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780 Query: 787 RGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGK 846 RGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGK Sbjct: 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840 Query: 847 VIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPF 906 VIGIRVFS ED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPF Sbjct: 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900 Query: 907 LPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLPEELLHA 966 L DGTPVDIILNTHGVPRRMN+GQILETHLGW A SGWK+D A G+PDWA LP+ELL A Sbjct: 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960 Query: 967 APNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVG 1026 PN IVSTPVFDGA+E ELQGLLS TLPNRDGDV+V DGKA+LFDGRSGEPFPYPVTVG Sbjct: 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020 Query: 1027 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1086 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ Sbjct: 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080 Query: 1087 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIX 1146 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI Sbjct: 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140 Query: 1147 XXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 ANLGINLSRNESAS+EDLA Sbjct: 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172 >sp|B2HSJ3|RPOB_MYCMM Tax_Id=216594 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium marinum] Length = 1176 Score = 2084 bits (5400), Expect = 0.0 Identities = 1062/1178 (90%), Positives = 1086/1178 (92%), Gaps = 2/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEG IL DF Q TD GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGRILADFRQ--TDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 58 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWLIGS WR +AA RGD PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 59 FEWLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVD 118 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 119 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 178 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKST+K LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 179 RSPGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 238 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGW++EQI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 239 LGWSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 298 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+ MT PGG Sbjct: 299 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGG 358 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 359 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 418 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 419 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 478 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHV Sbjct: 479 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHV 538 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID GRF+EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 539 VAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 598 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVA+K+GVIEEVSADYITV Sbjct: 599 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKAGVIEEVSADYITV 658 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTR TYRMRKFARSNHGTCANQSPIVDAG+RVEAGQVIADGPCT+NGEMALGKNLL Sbjct: 659 MADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLL 718 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 719 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 778 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 779 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 838 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 839 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 898 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 AEDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAKSGW IDVA G+P+WA LP Sbjct: 899 AEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLP 958 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 E LL A P+ IVSTPVFDGA+E ELQGLLS+TLPNRDG+V+V GDGKA LFDGRSGEPFP Sbjct: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1139 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1176 >sp|A0PM24|RPOB_MYCUA Tax_Id=362242 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium ulcerans] Length = 1176 Score = 2081 bits (5393), Expect = 0.0 Identities = 1061/1178 (90%), Positives = 1085/1178 (92%), Gaps = 2/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEG IL DF Q TD GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGRILADFRQ--TDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 58 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWLIGS WR +AA RGD PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 59 FEWLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVD 118 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMG FPMMTEKGTFIINGTERVVVSQLV Sbjct: 119 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGGFPMMTEKGTFIINGTERVVVSQLV 178 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKST+K LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 179 RSPGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 238 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGW++EQI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 239 LGWSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 298 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+ MT PGG Sbjct: 299 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGG 358 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 359 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 418 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 419 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 478 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHV Sbjct: 479 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHV 538 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID GRF+EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 539 VAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 598 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVA+K+GVIEEVSADYITV Sbjct: 599 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKAGVIEEVSADYITV 658 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTR TYRMRKFARSNHGTCANQSPIVDAG+RVEAGQVIADGPCT+NGEMALGKNLL Sbjct: 659 MADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLL 718 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 719 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 778 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 779 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 838 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 839 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 898 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 AEDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAKSGW IDVA G+P+WA LP Sbjct: 899 AEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLP 958 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 E LL A P+ IVSTPVFDGA+E ELQGLLS+TLPNRDG+V+V GDGKA LFDGRSGEPFP Sbjct: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1139 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1176 >tr|A1XM12|A1XM12_9MYCO Tax_Id=35617 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium indicus pranii] Length = 1148 Score = 2080 bits (5388), Expect = 0.0 Identities = 1060/1149 (92%), Positives = 1076/1149 (93%), Gaps = 7/1149 (0%) Query: 34 GAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKP----VGGLEEV 89 GAPNR+SFAKLREPLEVPGLLDVQ DSFEWLIG+P WR AAA+RGD KP VGGLEEV Sbjct: 3 GAPNRVSFAKLREPLEVPGLLDVQIDSFEWLIGAPRWREAAAARGDGKPGVTPVGGLEEV 62 Query: 90 LYELSPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFINNNTGEIKS 149 L ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ECKDKDMTYAAPLFVTAEFINNNTGEIKS Sbjct: 63 LLELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKS 122 Query: 150 QTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRG 209 QTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEK LHSVKVIPSRG Sbjct: 123 QTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKLLHSVKVIPSRG 182 Query: 210 AWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLEKDNTVG 269 AWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQITERFGFSEIM STLEKDNT G Sbjct: 183 AWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQITERFGFSEIMMSTLEKDNTAG 242 Query: 270 TDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGELIT 329 TDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGE IT Sbjct: 243 TDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGEPIT 302 Query: 330 SSTLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQI 389 SSTLTEEDVVATIEYLVRLHEGQ TMTVPGG+EVPVETDDIDHFGNRRLRTVGELIQNQI Sbjct: 303 SSTLTEEDVVATIEYLVRLHEGQPTMTVPGGIEVPVETDDIDHFGNRRLRTVGELIQNQI 362 Query: 390 RVGMSXXXXXXXXXXXXQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGL 449 RVGMS QDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGL Sbjct: 363 RVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGL 422 Query: 450 THKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPF 509 THKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPF Sbjct: 423 THKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPF 482 Query: 510 GFIETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRFLEPRVLVRRKAGEVE 569 GFIETPYRKVVDGVV+DEI YLTADEEDRHVVAQANSPID GRF E RVLVRRKAGEVE Sbjct: 483 GFIETPYRKVVDGVVTDEIHYLTADEEDRHVVAQANSPIDAKGRFEESRVLVRRKAGEVE 542 Query: 570 YVASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTG 629 YV SSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTG Sbjct: 543 YVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTG 602 Query: 630 MELRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTRRTYRMRKFARSNHGTCANQSPI 689 MELRAAIDAG VVVA+K+GVIEEVSADYITVMADDGTR TYRMRKF RSNHGTCANQSPI Sbjct: 603 MELRAAIDAGDVVVADKAGVIEEVSADYITVMADDGTRHTYRMRKFERSNHGTCANQSPI 662 Query: 690 VDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTS 749 VDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTS Sbjct: 663 VDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTS 722 Query: 750 IHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPK 809 IHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPK Sbjct: 723 IHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPK 782 Query: 810 GXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSHEDDDELPAGVNELV 869 G AIFGEKAREVRDTSLKVPHGESGKVIGIRVFS EDDDELPAGVNELV Sbjct: 783 GETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVNELV 842 Query: 870 RVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPVDIILNTHGVPRRMNVG 929 RVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPFLPDGTPVDIILNTHGVPRRMN+G Sbjct: 843 RVYVAQKRKISDGDKLAGRHGNKGVIGKILPQEDMPFLPDGTPVDIILNTHGVPRRMNIG 902 Query: 930 QILETHLGWVAKSGWKIDVAGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLL 989 QILETHLGWVAKSGW I+ G PDWAVNLPEEL HA P+QIVSTPVFDGAKEEEL G+L Sbjct: 903 QILETHLGWVAKSGWNIE---GSPDWAVNLPEELRHAQPDQIVSTPVFDGAKEEELAGML 959 Query: 990 SSTLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPY 1049 S TLPNRDG+VMV GDGK+VLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPY Sbjct: 960 SCTLPNRDGEVMVDGDGKSVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPY 1019 Query: 1050 SMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKG 1109 SMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKG Sbjct: 1020 SMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKG 1079 Query: 1110 ENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIXXXXXXXXXXXXXXANLGINLSRN 1169 ENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI ANLGINLSRN Sbjct: 1080 ENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLSRN 1139 Query: 1170 ESASIEDLA 1178 ESAS+EDLA Sbjct: 1140 ESASVEDLA 1148 >tr|Q2M4T9|Q2M4T9_9MYCO Tax_Id=319709 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium barrassiae] Length = 1167 Score = 2052 bits (5316), Expect = 0.0 Identities = 1048/1179 (88%), Positives = 1076/1179 (91%), Gaps = 13/1179 (1%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL QSK+ GAPNRISFAKLREPLEVPGLLDVQT+S Sbjct: 1 MLEGCILAGSRQSKS---------AVVTNNSVPGAPNRISFAKLREPLEVPGLLDVQTES 51 Query: 61 FEWLIGSPCWRAAAASRGD-LKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPV 119 FEWLIGS WR A RGD ++PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV Sbjct: 52 FEWLIGSDRWRENAKLRGDAIEPVGGLEEVLTELSPIEDFSGSMSLSFSDPRFDEVKAPV 111 Query: 120 EECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQL 179 +ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQL Sbjct: 112 DECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQL 171 Query: 180 VRSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLK 239 VRSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLK Sbjct: 172 VRSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLK 231 Query: 240 ALGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENL 299 ALGWT+EQI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENL Sbjct: 232 ALGWTNEQIVERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENL 291 Query: 300 FFKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPG 359 FFKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLH+G TMT PG Sbjct: 292 FFKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHQGDQTMTAPG 351 Query: 360 GVEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLIN 419 GVEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLIN Sbjct: 352 GVEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLIN 411 Query: 420 IRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSH 479 IRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SH Sbjct: 412 IRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSH 471 Query: 480 YGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRH 539 YGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV DGVV+D+IEYLTADEEDRH Sbjct: 472 YGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVKDGVVTDDIEYLTADEEDRH 531 Query: 540 VVAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEH 599 VVAQANSP DE GRFLE RVLVRRK GEVE+V+++EVDYMDVSPRQMVSVATAMIPFLEH Sbjct: 532 VVAQANSPTDEKGRFLEERVLVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEH 591 Query: 600 DDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYIT 659 DDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVA+K+GVIEEVSADYIT Sbjct: 592 DDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKAGVIEEVSADYIT 651 Query: 660 VMADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNL 719 VMADDGTR TYRMRKFARSNHGTCANQ PIVDAGDRVEAGQVIADGPCTENGEMALGKNL Sbjct: 652 VMADDGTRHTYRMRKFARSNHGTCANQRPIVDAGDRVEAGQVIADGPCTENGEMALGKNL 711 Query: 720 LVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDE 779 LVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDE Sbjct: 712 LVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDE 771 Query: 780 VLADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKV 839 VLADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKV Sbjct: 772 VLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKV 831 Query: 840 PHGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKIL 899 PHGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKIL Sbjct: 832 PHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKIL 891 Query: 900 PAEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNL 959 P EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGW AK+GWKID G PDWA NL Sbjct: 892 PVEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWAAKAGWKID---GSPDWAANL 948 Query: 960 PEELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPF 1019 PEE+L PN IVSTPVFDGA+E ELQGLLS+TLPNRDGD +V GDGKA LFDGRSGEPF Sbjct: 949 PEEMLEVEPNTIVSTPVFDGAREAELQGLLSATLPNRDGDTLVDGDGKAQLFDGRSGEPF 1008 Query: 1020 PYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAY 1079 PYPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAY Sbjct: 1009 PYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAY 1068 Query: 1080 GAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS 1139 GAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS Sbjct: 1069 GAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS 1128 Query: 1140 SDGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 SDGAAI ANLGINLSRNESAS+EDLA Sbjct: 1129 SDGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1167 >tr|Q6X0L8|Q6X0L8_9MYCO Tax_Id=134601 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium goodii] Length = 1169 Score = 2047 bits (5304), Expect = 0.0 Identities = 1040/1178 (88%), Positives = 1076/1178 (91%), Gaps = 9/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL QSK++ GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILAVSSQSKSNAITNNSVP---------GAPNRVSFAKLREPLEVPGLLDVQTDS 51 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWL+GS WR AA RG+ PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA V+ Sbjct: 52 FEWLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVD 111 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 112 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 171 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 172 RSPGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 231 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQI ERFGFSEIM TLEKD T GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 232 LGWTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 291 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 292 FKEKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 351 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 352 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 411 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 412 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 471 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I+YLTADEEDRHV Sbjct: 472 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHV 531 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSP DE GRF E RV+VR+K GEVE+V++ +VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 532 VAQANSPTDENGRFTEERVMVRKKGGEVEFVSAGQVDYMDVSPRQMVSVATAMIPFLEHD 591 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVA+K+GVIEEVSADYITV Sbjct: 592 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKTGVIEEVSADYITV 651 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTR++YR+RKFARSNHGTCANQ PIVDAG RVEAGQVIADGPCT+NGEMALGKNLL Sbjct: 652 MADDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLL 711 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 712 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 771 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 772 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 831 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 832 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 891 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW IDVA G+PDWA LP Sbjct: 892 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLP 951 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 EEL A + IV+TPVFDGA+E EL GLL STLPNRDG+VMV DGKA LFDGRSGEPFP Sbjct: 952 EELYTAPSDSIVATPVFDGAQEGELAGLLGSTLPNRDGEVMVNADGKATLFDGRSGEPFP 1011 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1012 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1071 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1072 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1131 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1132 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 >tr|D0EL37|D0EL37_9MYCO Tax_Id=212194 (rpoB)SubName: Full=DNA-directed RNA polymerase subunit beta; EC=2.7.7.6;[Mycobacterium sp. DSM 3803] Length = 1178 Score = 2046 bits (5301), Expect = 0.0 Identities = 1042/1178 (88%), Positives = 1073/1178 (91%), Gaps = 8/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 VLEGCIL QSK+ GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 9 VLEGCILAVSSQSKS--------ANATTNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWL+GS WR A RG+ PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 61 FEWLVGSDRWRQNAVDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKAPVD 120 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWTSEQI ERFGFSEIM TLEKD+T GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMMGTLEKDSTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 361 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHY 480 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVV+GVV+D+I+YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVEGVVTDQIDYLTADEEDRHV 540 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSP D GRF E RV+VR+K GEVE+VA+ +VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPTDADGRFSEDRVMVRKKGGEVEFVAADQVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVV++K+GVIEEVSADY+TV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSDKAGVIEEVSADYVTV 660 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTR TYRMRKFARSNHGTCANQ PIVDAG RVEAGQVIADGPCTENGEMALGKNLL Sbjct: 661 MADDGTRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTENGEMALGKNLL 720 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW I+VA G PDWA LP Sbjct: 901 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVADGTPDWASKLP 960 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 E LL A + IVSTPVFDGA+E EL GLL STLPNRDG+VMV GDGKA LFDGRSGEPFP Sbjct: 961 EGLLSAPADSIVSTPVFDGAQEGELAGLLGSTLPNRDGEVMVDGDGKATLFDGRSGEPFP 1020 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1141 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1178 >tr|Q6YI61|Q6YI61_MYCFO Tax_Id=1766 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium fortuitum] Length = 1208 Score = 2046 bits (5300), Expect = 0.0 Identities = 1040/1178 (88%), Positives = 1072/1178 (91%), Gaps = 8/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 VLEGCIL QSK+ GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 39 VLEGCILAVSSQSKS--------ANAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 90 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 F+WL+G+ WR A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 91 FDWLVGADGWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVD 150 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 151 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 210 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 211 RSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 270 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQITERFGFSEIM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 271 LGWTNEQITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLF 330 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 331 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 390 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 391 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 450 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 451 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 510 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSD+I+YLTADEEDRHV Sbjct: 511 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLTADEEDRHV 570 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID GRF E RV+VRRK GEVE VA S+VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 571 VAQANSPIDADGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHD 630 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG V+V+EK+GV+EEVSADYITV Sbjct: 631 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITV 690 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDG+R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCTENGEMALGKNLL Sbjct: 691 MADDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLL 750 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 751 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 810 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 811 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 870 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 871 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 930 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW IDVA G P+WA LP Sbjct: 931 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASRLP 990 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 E+L A + IVSTPVFDGA+EEEL GLL STLPNRDGDVMV DGKA LFDGRSGEPFP Sbjct: 991 EQLYSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFP 1050 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1051 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1110 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1111 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1170 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1171 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1208 >tr|Q6YI64|Q6YI64_9MYCO Tax_Id=53462 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium mageritense] Length = 1178 Score = 2045 bits (5298), Expect = 0.0 Identities = 1041/1178 (88%), Positives = 1073/1178 (91%), Gaps = 8/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 VLEGCIL QSK+ GAPNR+S+AKLREPLEVPGLLDVQTDS Sbjct: 9 VLEGCILAVSSQSKS--------ANATTNNSVPGAPNRVSYAKLREPLEVPGLLDVQTDS 60 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWL+GS WR A RG+ PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 61 FEWLVGSDRWRQNAVDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKAPVD 120 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWTSEQI ERFGFSEIM TLEKD+T GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMMGTLEKDSTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 361 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHY 480 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVV+GVV+D+I+YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVEGVVTDQIDYLTADEEDRHV 540 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSP D GRF E RV+VR+K GEVE+VA+ +VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPTDADGRFSEDRVMVRKKGGEVEFVAADQVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVV++K+GVIEEVSADY+TV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSDKAGVIEEVSADYVTV 660 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTR TYRMRKFARSNHGTCANQ PIVDAG RVEAGQVIADGPCTENGEMALGKNLL Sbjct: 661 MADDGTRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTENGEMALGKNLL 720 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW I+VA G PDWA LP Sbjct: 901 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVADGTPDWASKLP 960 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 E LL A + IVSTPVFDGA+E EL GLL STLPNRDG+VMV GDGKA LFDGRSGEPFP Sbjct: 961 EGLLSAPADSIVSTPVFDGAQEGELAGLLGSTLPNRDGEVMVDGDGKATLFDGRSGEPFP 1020 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1141 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1178 >tr|Q6X0L6|Q6X0L6_9MYCO Tax_Id=1796 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium senegalense] Length = 1170 Score = 2044 bits (5296), Expect = 0.0 Identities = 1039/1178 (88%), Positives = 1072/1178 (91%), Gaps = 8/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL QSK+ GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILAVSSQSKS--------ANAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 52 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 F+WL+GS WR A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 53 FDWLVGSDEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVD 112 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 113 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 172 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 173 RSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 232 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQITERFGFSEIM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 233 LGWTNEQITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLF 292 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 293 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 352 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 353 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 412 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 413 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 472 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I+YLTADEEDRHV Sbjct: 473 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHV 532 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID GRF E RV+VRRK GEVE VA S+VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 533 VAQANSPIDTDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHD 592 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG V+V+EK+GV+EEVSADYITV Sbjct: 593 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITV 652 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDG+R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCTENGEMALGKNLL Sbjct: 653 MADDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLL 712 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 713 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 772 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 773 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 832 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 833 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 892 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW IDVA G P+WA LP Sbjct: 893 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLP 952 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 E+L A + IVSTPVFDGA+EEEL GLL STLPNRDGDVMV DGKA LFDGRSGEPFP Sbjct: 953 EQLYSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFP 1012 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1013 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1072 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1073 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1132 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1133 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1170 >tr|Q6YI60|Q6YI60_MYCFO Tax_Id=1766 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium fortuitum] Length = 1177 Score = 2044 bits (5295), Expect = 0.0 Identities = 1038/1178 (88%), Positives = 1072/1178 (91%), Gaps = 8/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 VLEGCIL QSK+ GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 8 VLEGCILAVSSQSKS--------ANAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 59 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 F+WL+GS WR A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 60 FDWLVGSDEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVD 119 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 120 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 179 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 180 RSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 239 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQITERFGFSEIM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 240 LGWTNEQITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLF 299 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 300 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 359 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DD+DHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 360 VEVPVEVDDMDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 419 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 420 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 479 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I+YLTADEEDRHV Sbjct: 480 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHV 539 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID GRF E RV+VRRK GEVE VA S+VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 540 VAQANSPIDPDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHD 599 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG V+V+EK+G++EEVSADYITV Sbjct: 600 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGIVEEVSADYITV 659 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDG+R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCTENGEMALGKNLL Sbjct: 660 MADDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLL 719 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 720 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 779 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 780 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 839 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 840 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 899 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW IDVA G P+WA LP Sbjct: 900 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLP 959 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 E+L A + IVSTPVFDGA+EEEL GLL STLPNRDGDVMV DGKA LFDGRSGEPFP Sbjct: 960 EQLYSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFP 1019 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1020 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1079 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1080 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1139 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1140 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1177 >tr|Q2M4U0|Q2M4U0_9MYCO Tax_Id=451644 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium conceptionense] Length = 1170 Score = 2043 bits (5293), Expect = 0.0 Identities = 1039/1178 (88%), Positives = 1072/1178 (91%), Gaps = 8/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL QSK+ GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILAVSSQSKS--------ANAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 52 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 F+WL+GS WR A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 53 FDWLVGSDEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVD 112 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 113 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 172 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 173 RSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 232 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQITERFGFSEIM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 233 LGWTNEQITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLF 292 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 293 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 352 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 353 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 412 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 413 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHY 472 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I+YLTADEEDRHV Sbjct: 473 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHV 532 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID GRF E RV+VRRK GEVE VA S+VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 533 VAQANSPIDADGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHD 592 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVV+EK+GV+EEVSADYITV Sbjct: 593 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITV 652 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDG+R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCTENGEMALGKNLL Sbjct: 653 MADDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLL 712 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 713 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 772 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 773 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 832 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 833 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 892 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW IDVA G P+WA LP Sbjct: 893 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLP 952 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 E+L A + IVSTPVFDGA+EEEL GLL STLPNRDGDVMV DGKA LFDGRSGEPFP Sbjct: 953 EQLYSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVDSDGKATLFDGRSGEPFP 1012 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMY++KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1013 YPVTVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1072 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1073 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1132 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1133 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1170 >tr|Q6YI68|Q6YI68_MYCFO Tax_Id=1766 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium fortuitum] Length = 1170 Score = 2043 bits (5292), Expect = 0.0 Identities = 1037/1178 (88%), Positives = 1072/1178 (91%), Gaps = 8/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL QSK+ GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILAVSSQSKS--------ANAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 52 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 F+WL+G+ WR A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 53 FDWLVGADEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVD 112 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 113 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 172 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 173 RSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 232 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQITERFGFSEIM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 233 LGWTNEQITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLF 292 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 293 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 352 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 353 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 412 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 413 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 472 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I+YLTADEEDRHV Sbjct: 473 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHV 532 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID GRF E RV+VRRK GEVE VA S+VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 533 VAQANSPIDPDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHD 592 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG V+V+EK+G++EEVSADYITV Sbjct: 593 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGIVEEVSADYITV 652 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDG+R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCTENGEMALGKNLL Sbjct: 653 MADDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLL 712 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 713 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 772 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 773 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 832 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 833 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 892 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW IDVA G P+WA LP Sbjct: 893 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLP 952 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 E+L A + IVSTPVFDGA+EEEL GLL STLPNRDGDVMV DGKA LFDGRSGEPFP Sbjct: 953 EQLYSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFP 1012 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1013 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1072 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1073 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1132 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1133 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1170 >tr|Q6X0L1|Q6X0L1_9MYCO Tax_Id=59750 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium wolinskyi] Length = 1169 Score = 2043 bits (5292), Expect = 0.0 Identities = 1039/1178 (88%), Positives = 1071/1178 (90%), Gaps = 9/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL QS + GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILAVSSQSTANAITNNSVP---------GAPNRVSFAKLREPLEVPGLLDVQTDS 51 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 F+WL+GS WR A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 52 FDWLVGSDEWRQKAIDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVD 111 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 112 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 171 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 172 RSPGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 231 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQI ERFGFSEIM TLEKD+T GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 232 LGWTNEQIVERFGFSEIMMGTLEKDSTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 291 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 292 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 351 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 352 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 411 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 412 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 471 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I+YLTADEEDRHV Sbjct: 472 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHV 531 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID GRF E RV+VRRK GEVE VA S+VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 532 VAQANSPIDADGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHD 591 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVV+EK+GV+EEVSADY+TV Sbjct: 592 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKTGVVEEVSADYVTV 651 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTR TYRMRKFARSNHGTCANQ PIVDAG RVE+GQVIADGPCT+NGEMALGKNLL Sbjct: 652 MADDGTRHTYRMRKFARSNHGTCANQRPIVDAGQRVESGQVIADGPCTQNGEMALGKNLL 711 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 712 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 771 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 772 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 831 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 832 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 891 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW IDVA G PDWA LP Sbjct: 892 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPDWASKLP 951 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 E+L A + IVSTPVFDGA+E ELQGLL STLPNRDG+VMV DGKA LFDGRSGEPFP Sbjct: 952 EQLYSAPADSIVSTPVFDGAQEGELQGLLGSTLPNRDGEVMVDADGKATLFDGRSGEPFP 1011 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1012 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1071 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1072 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1131 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1132 DGAAIEMRDGDDADLERAAANLGINLSRNESASVEDLA 1169 >sp|A3PV78|RPOB_MYCSJ Tax_Id=164757 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium sp.] Length = 1172 Score = 2042 bits (5291), Expect = 0.0 Identities = 1038/1180 (87%), Positives = 1077/1180 (91%), Gaps = 10/1180 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL QSK+ GAPNRISFAKLREPLEVPGLLDVQT+S Sbjct: 1 MLEGCILAVSSQSKS--------AKAITNNSVPGAPNRISFAKLREPLEVPGLLDVQTES 52 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 F+WLIG+ WR A +RGD+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 53 FDWLIGADSWRQRATARGDVNPTGGLEEVLTELSPIEDFSGSMSLSFSDPRFDEVKAPVD 112 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 113 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 172 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 173 RSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 232 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQITERFGFSEIM STLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 233 LGWTNEQITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 292 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+ + ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 293 FKEKRYDLARVGRYKVNKKLGLNTDKPITSSTLTEEDVVATIEYLVRLHEGQATMTVPGG 352 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 353 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 412 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 413 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 472 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I+YLTADEEDRHV Sbjct: 473 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHV 532 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSP+D+ G F E RVLVRRK GEVE+V+++EVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 533 VAQANSPLDDEGHFTEDRVLVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHD 592 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVV+EK+GV+EEVSADYITV Sbjct: 593 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITV 652 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTR TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCT+NGEMALGKNLL Sbjct: 653 MADDGTRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTQNGEMALGKNLL 712 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 713 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 772 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 773 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 832 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 833 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 892 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAG--GIPDWAVN 958 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW I+VAG G+PDWA Sbjct: 893 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVAGADGVPDWAEK 952 Query: 959 LPEELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEP 1018 LPEEL A + IV+TPVFDGA+E EL GLL+STLPNRDGDVMV DGKA LFDGRSGEP Sbjct: 953 LPEELYSAPSDSIVATPVFDGARENELSGLLASTLPNRDGDVMVNEDGKAELFDGRSGEP 1012 Query: 1019 FPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA 1078 FPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA Sbjct: 1013 FPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA 1072 Query: 1079 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL 1138 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL Sbjct: 1073 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL 1132 Query: 1139 SSDGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 SSDGAAI ANLGINLSRNESAS+EDLA Sbjct: 1133 SSDGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1172 >tr|Q6X0L7|Q6X0L7_9MYCO Tax_Id=39693 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium porcinum] Length = 1169 Score = 2042 bits (5291), Expect = 0.0 Identities = 1038/1178 (88%), Positives = 1071/1178 (90%), Gaps = 9/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL QS + GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILAVSSQSTANANTNNSVP---------GAPNRVSFAKLREPLEVPGLLDVQTDS 51 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 F+WL+GS WR A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 52 FDWLVGSDEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVD 111 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 112 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 171 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 172 RSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 231 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQITERFGFSEIM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 232 LGWTNEQITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLF 291 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 292 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 351 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 352 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 411 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 412 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHY 471 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV+DGVVSD+I+YLTADEEDRHV Sbjct: 472 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVIDGVVSDQIDYLTADEEDRHV 531 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID GRF E RV+VRRK GEVE VA S+VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 532 VAQANSPIDNDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHD 591 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVV+EK+GV+EEVSADYITV Sbjct: 592 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITV 651 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDG+R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCTENGEMALGKNLL Sbjct: 652 MADDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLL 711 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 712 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 771 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 772 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 831 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 832 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 891 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW IDVA G P+WA LP Sbjct: 892 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLP 951 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 E+L A + IVSTPVFDGA+EEEL GLL STLPNRDGDVMV DGKA LFDGRSGEPFP Sbjct: 952 EQLYSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVDSDGKATLFDGRSGEPFP 1011 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMY++KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1012 YPVTVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1071 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1072 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1131 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1132 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 >tr|Q6X0L2|Q6X0L2_9MYCO Tax_Id=1802 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium farcinogenes] Length = 1170 Score = 2042 bits (5291), Expect = 0.0 Identities = 1038/1178 (88%), Positives = 1072/1178 (91%), Gaps = 8/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL QSK+ GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILAVSSQSKS--------ANAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 52 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 F+WL+GS WR A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 53 FDWLVGSDEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVD 112 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 113 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 172 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 173 RSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 232 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQITERFGFSEIM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 233 LGWTNEQITERFGFSEIMMVTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLF 292 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 293 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 352 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 353 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 412 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 413 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 472 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I+YLTADEEDRHV Sbjct: 473 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHV 532 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQAN+PID GRF E RV+VRRK GEVE VA S+VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 533 VAQANTPIDTDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHD 592 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG V+V+EK+GV+EEVSADYITV Sbjct: 593 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITV 652 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDG+R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCTENGEMALGKNLL Sbjct: 653 MADDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLL 712 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 713 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 772 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 773 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 832 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 833 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 892 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW IDVA G P+WA LP Sbjct: 893 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLP 952 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 E+L A + IVSTPVFDGA+EEEL GLL STLPNRDGDVMV DGKA LFDGRSGEPFP Sbjct: 953 EQLYSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFP 1012 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1013 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1072 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1073 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1132 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1133 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1170 >tr|Q6X0L9|Q6X0L9_MYCSM Tax_Id=1772 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium smegmatis] Length = 1169 Score = 2040 bits (5285), Expect = 0.0 Identities = 1036/1178 (87%), Positives = 1074/1178 (91%), Gaps = 9/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL QSK++ GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILAVSSQSKSNAITNNSVP---------GAPNRVSFAKLREPLEVPGLLDVQTDS 51 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWL+GS WR AA RG+ PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA V+ Sbjct: 52 FEWLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVD 111 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 112 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 171 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 172 RSPGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 231 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQI ERFGFSEIM TLEKD T GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 232 LGWTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 291 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ++MTVPGG Sbjct: 292 FKEKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGG 351 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 352 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 411 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 412 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 471 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I+YLTADEEDRHV Sbjct: 472 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHV 531 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSP DE GRF E RV+VR+K GEVE+V++ +VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 532 VAQANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHD 591 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVA+K+GVIEEVSADYITV Sbjct: 592 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKTGVIEEVSADYITV 651 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTR++YR+RKFARSNHGTCANQ PIVDAG RVEAGQVIADGPCT+NGEMALGKNLL Sbjct: 652 MADDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLL 711 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 712 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 771 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 772 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 831 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 832 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 891 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW IDVA G+PDWA LP Sbjct: 892 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLP 951 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 EEL A + V+TPVFDGA+E EL GLL STLPNRDG+VMV DGKA LFDGRSGEPFP Sbjct: 952 EELYSAPADSTVATPVFDGAQEGELAGLLGSTLPNRDGEVMVNADGKATLFDGRSGEPFP 1011 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1012 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1071 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1072 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1131 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1132 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 >sp|P60281|RPOB_MYCS2 Tax_Id=246196 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium smegmatis] Length = 1169 Score = 2038 bits (5281), Expect = 0.0 Identities = 1035/1178 (87%), Positives = 1074/1178 (91%), Gaps = 9/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL QSK++ GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILAVSSQSKSNAITNNSVP---------GAPNRVSFAKLREPLEVPGLLDVQTDS 51 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWL+GS WR AA RG+ PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA V+ Sbjct: 52 FEWLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVD 111 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 112 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 171 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDETIDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 172 RSPGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 231 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQI ERFGFSEIM TLEKD T GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 232 LGWTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 291 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ++MTVPGG Sbjct: 292 FKEKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGG 351 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 352 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 411 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 412 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 471 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I+YLTADEEDRHV Sbjct: 472 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHV 531 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSP DE GRF E RV+VR+K GEVE+V++ +VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 532 VAQANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHD 591 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVA+K+GVIEEVSADYITV Sbjct: 592 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKTGVIEEVSADYITV 651 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTR++YR+RKFARSNHGTCANQ PIVDAG RVEAGQVIADGPCT+NGEMALGKNLL Sbjct: 652 MADDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLL 711 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 712 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 771 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 772 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 831 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 832 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 891 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW IDVA G+PDWA LP Sbjct: 892 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLP 951 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 EEL A + V+TPVFDGA+E EL GLL STLPNRDG+VMV DGK+ LFDGRSGEPFP Sbjct: 952 EELYSAPADSTVATPVFDGAQEGELAGLLGSTLPNRDGEVMVDADGKSTLFDGRSGEPFP 1011 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1012 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1071 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1072 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1131 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1132 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 >sp|Q1BDF0|RPOB_MYCSS Tax_Id=164756 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium sp.] Length = 1172 Score = 2037 bits (5278), Expect = 0.0 Identities = 1035/1180 (87%), Positives = 1075/1180 (91%), Gaps = 10/1180 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL QSK+ GAPNRISFAKLREPLEVPGLLDVQT+S Sbjct: 1 MLEGCILAVSSQSKS--------AKAITNNSVPGAPNRISFAKLREPLEVPGLLDVQTES 52 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 F+WLIG+ WR A +RGD+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 53 FDWLIGADSWRQRATARGDVNPTGGLEEVLTELSPIEDFSGSMSLSFSDPRFDEVKAPVD 112 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 113 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 172 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 173 RSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 232 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQITERFGFSEIM STLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 233 LGWTNEQITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 292 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+ + ITSSTLTEEDVVATIEYLVRLH+G + MTVPGG Sbjct: 293 FKEKRYDLARVGRYKVNKKLGLNTDKPITSSTLTEEDVVATIEYLVRLHQGDTVMTVPGG 352 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 353 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 412 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 413 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 472 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I+YLTADEEDRHV Sbjct: 473 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHV 532 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSP+D+ G F E RVLVRRK GEVE+V+++EVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 533 VAQANSPLDDEGHFTEDRVLVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHD 592 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVV+EK+GV+EEVSADYITV Sbjct: 593 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITV 652 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTR TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCT+NGEMALGKNLL Sbjct: 653 MADDGTRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTQNGEMALGKNLL 712 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 713 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 772 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 773 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 832 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 833 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 892 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAG--GIPDWAVN 958 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW I+VAG G+PDWA Sbjct: 893 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVAGADGVPDWAEK 952 Query: 959 LPEELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEP 1018 LPEEL A + IV+TPVFDGA+E EL GLL+STLPNRDGDVMV DGKA LFDGRSGEP Sbjct: 953 LPEELYSAPSDSIVATPVFDGARENELSGLLASTLPNRDGDVMVNEDGKAELFDGRSGEP 1012 Query: 1019 FPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA 1078 FPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA Sbjct: 1013 FPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA 1072 Query: 1079 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL 1138 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL Sbjct: 1073 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL 1132 Query: 1139 SSDGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 SSDGAAI ANLGINLSRNESAS+EDLA Sbjct: 1133 SSDGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1172 >sp|A1UBJ3|RPOB_MYCSK Tax_Id=189918 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium sp.] Length = 1172 Score = 2037 bits (5278), Expect = 0.0 Identities = 1035/1180 (87%), Positives = 1075/1180 (91%), Gaps = 10/1180 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL QSK+ GAPNRISFAKLREPLEVPGLLDVQT+S Sbjct: 1 MLEGCILAVSSQSKS--------AKAITNNSVPGAPNRISFAKLREPLEVPGLLDVQTES 52 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 F+WLIG+ WR A +RGD+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 53 FDWLIGADSWRQRATARGDVNPTGGLEEVLTELSPIEDFSGSMSLSFSDPRFDEVKAPVD 112 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 113 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 172 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 173 RSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 232 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQITERFGFSEIM STLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 233 LGWTNEQITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 292 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+ + ITSSTLTEEDVVATIEYLVRLH+G + MTVPGG Sbjct: 293 FKEKRYDLARVGRYKVNKKLGLNTDKPITSSTLTEEDVVATIEYLVRLHQGDTVMTVPGG 352 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 353 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 412 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 413 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 472 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I+YLTADEEDRHV Sbjct: 473 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHV 532 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSP+D+ G F E RVLVRRK GEVE+V+++EVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 533 VAQANSPLDDEGHFTEDRVLVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHD 592 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVV+EK+GV+EEVSADYITV Sbjct: 593 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITV 652 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTR TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCT+NGEMALGKNLL Sbjct: 653 MADDGTRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTQNGEMALGKNLL 712 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 713 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 772 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 773 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 832 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 833 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 892 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAG--GIPDWAVN 958 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW I+VAG G+PDWA Sbjct: 893 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVAGADGVPDWAEK 952 Query: 959 LPEELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEP 1018 LPEEL A + IV+TPVFDGA+E EL GLL+STLPNRDGDVMV DGKA LFDGRSGEP Sbjct: 953 LPEELYSAPSDSIVATPVFDGARENELSGLLASTLPNRDGDVMVNEDGKAELFDGRSGEP 1012 Query: 1019 FPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA 1078 FPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA Sbjct: 1013 FPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA 1072 Query: 1079 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL 1138 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL Sbjct: 1073 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL 1132 Query: 1139 SSDGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 SSDGAAI ANLGINLSRNESAS+EDLA Sbjct: 1133 SSDGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1172 >tr|Q6YI67|Q6YI67_MYCPR Tax_Id=43304 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium peregrinum] Length = 1169 Score = 2037 bits (5278), Expect = 0.0 Identities = 1036/1178 (87%), Positives = 1070/1178 (90%), Gaps = 9/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL QS + GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILAVSSQSTANANTNNSVP---------GAPNRVSFAKLREPLEVPGLLDVQTDS 51 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 F+WL+G+ WR A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 52 FDWLVGADGWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVD 111 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 112 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 171 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 172 RSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 231 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWTSEQITERFGFSEIM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 232 LGWTSEQITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLF 291 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ++MTVPGG Sbjct: 292 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGG 351 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 352 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 411 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 412 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 471 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSD+I+YLTADEEDRHV Sbjct: 472 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLTADEEDRHV 531 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID GRF E RV+VRRK GEVE VA S+VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 532 VAQANSPIDTDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHD 591 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG V+V+EK+GV+EEVSADYITV Sbjct: 592 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITV 651 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDG+R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCTENGEMALGKNLL Sbjct: 652 MADDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLL 711 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 712 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 771 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 772 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 831 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 832 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 891 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPF+PDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW IDVA G P+WA LP Sbjct: 892 VEDMPFMPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAEGTPEWASRLP 951 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 + L A + IVSTPVFDGA+EEEL GLL STLPNRDGDVMV DGKA LFDGRSGEPFP Sbjct: 952 DGLHSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFP 1011 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1012 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1071 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1072 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1131 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1132 DGAAIEMRDGDDEDLDRAAANLGINLSRNESASVEDLA 1169 >tr|Q6YI66|Q6YI66_9MYCO Tax_Id=98668 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium septicum] Length = 1185 Score = 2034 bits (5269), Expect = 0.0 Identities = 1034/1178 (87%), Positives = 1068/1178 (90%), Gaps = 9/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 VLEGCIL QS + GAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 17 VLEGCILAVSSQSTANANTNNSVP---------GAPNRVSFAKLREPLEVPGLLDVQTDS 67 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 F+WL+G+ WR A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 68 FDWLVGADGWRQKAVDRGETNPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVD 127 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 128 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 187 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFD++IDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 188 RSPGVYFDDSIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 247 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQI ERFGFSEIM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 248 LGWTNEQIVERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLF 307 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGG Sbjct: 308 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 367 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 368 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 427 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 428 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 487 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSD+I+YLTADEEDRHV Sbjct: 488 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLTADEEDRHV 547 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSPID G F E RV+VRRK GEVE VA S+VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 548 VAQANSPIDADGSFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHD 607 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG V+V+EK+GV+EEVSADYITV Sbjct: 608 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITV 667 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDG+R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCTENGEMALGKNLL Sbjct: 668 MADDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLL 727 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 728 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 787 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 788 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 847 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 848 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 907 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPF+PDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW IDVA G P+WA LP Sbjct: 908 VEDMPFMPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAEGTPEWASRLP 967 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 + L A + IVSTPVFDGA+EEEL GLL STLPNRDGDVMV DGKA LFDGRSGEPFP Sbjct: 968 DGLHSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFP 1027 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1028 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1087 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1088 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1147 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1148 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1185 >sp|A1T4J2|RPOB_MYCVP Tax_Id=350058 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium vanbaalenii] Length = 1167 Score = 2028 bits (5255), Expect = 0.0 Identities = 1029/1178 (87%), Positives = 1067/1178 (90%), Gaps = 11/1178 (0%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL Q ++ GAPNRISFAKLREPLEVPGLLDVQT+S Sbjct: 1 MLEGCILAGSRQIESTTNNSVP-----------GAPNRISFAKLREPLEVPGLLDVQTES 49 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWLIG+ W AA RGD+ P GGL+EVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 50 FEWLIGAEDWFQRAADRGDVDPKGGLQEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVD 109 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 110 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 169 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 170 RSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 229 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQI ERFGFSEIM STLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 230 LGWTNEQIVERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 289 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+ G+ ITSSTLTEEDVVATIEYLVRLH+G TMT PGG Sbjct: 290 FKEKRYDLARVGRYKVNKKLGLNVGQPITSSTLTEEDVVATIEYLVRLHQGDQTMTAPGG 349 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 EVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 350 SEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 409 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 410 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 469 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV DGVV+D+I+YLTADEEDRHV Sbjct: 470 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVTDGVVTDQIDYLTADEEDRHV 529 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSP+D G F E RVLVRRK GEVE+V+++EVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 530 VAQANSPLDGDGHFEEERVLVRRKGGEVEFVSAAEVDYMDVSPRQMVSVATAMIPFLEHD 589 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVV EK+GV+EEVSADYITV Sbjct: 590 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVTEKAGVVEEVSADYITV 649 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTR TYRMRKFARSNHGTCANQ PIVDAG RVE+GQV+ADGPCTENGEMALGKNLL Sbjct: 650 MADDGTRHTYRMRKFARSNHGTCANQRPIVDAGQRVESGQVLADGPCTENGEMALGKNLL 709 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 710 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 769 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGI+RIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 770 LADLDERGIIRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 829 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 830 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 889 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW IDVA G P+WA LP Sbjct: 890 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWAAKLP 949 Query: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 E++L A + IV+TPVFDGA+E ELQGLL STLPNRDG+ MV DGKA LFDGRSGEPFP Sbjct: 950 EQMLSAPADSIVATPVFDGAQEGELQGLLGSTLPNRDGETMVNADGKATLFDGRSGEPFP 1009 Query: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1010 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1069 Query: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1070 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1129 Query: 1141 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1130 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1167 >sp|A4T1P4|RPOB_MYCGI Tax_Id=350054 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium gilvum] Length = 1174 Score = 2017 bits (5225), Expect = 0.0 Identities = 1028/1185 (86%), Positives = 1065/1185 (89%), Gaps = 18/1185 (1%) Query: 1 VLEGCILPDFGQSKTDXXXXXXXXXXXXXXXXXGAPNRISFAKLREPLEVPGLLDVQTDS 60 +LEGCIL Q ++ GAPNRISFAKLREPLEVPGLLDVQT+S Sbjct: 1 MLEGCILAGSRQIESTTNNSVP-----------GAPNRISFAKLREPLEVPGLLDVQTES 49 Query: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 FEWLIG+ W A RGD+ P GGL+EVL ELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 50 FEWLIGAEDWFQRAVDRGDVDPKGGLQEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVD 109 Query: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 110 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 169 Query: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 RSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 170 RSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 229 Query: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 LGWT+EQI ERFGFSEIM STLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 230 LGWTNEQIVERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 289 Query: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 FKEKRYDLARVGRYKVNKKLGL+ G+ ITSSTLTEEDVVATIEYLVRLH+G TMT PGG Sbjct: 290 FKEKRYDLARVGRYKVNKKLGLNVGQPITSSTLTEEDVVATIEYLVRLHQGDQTMTAPGG 349 Query: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 420 EVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 350 SEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 409 Query: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 410 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 469 Query: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSD+I+YLTADEEDRHV Sbjct: 470 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLTADEEDRHV 529 Query: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 VAQANSP+D GRF E RVLVRRK GEVE+V++SEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 530 VAQANSPLDGDGRFEEERVLVRRKGGEVEFVSASEVDYMDVSPRQMVSVATAMIPFLEHD 589 Query: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVV +K+GV+EEVSADYITV Sbjct: 590 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVTDKAGVVEEVSADYITV 649 Query: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 MADDGTR TYRMRKFARSNHGTCANQ PIVDAG RVE GQV+ADGPCTENGEMALGKNLL Sbjct: 650 MADDGTRHTYRMRKFARSNHGTCANQRPIVDAGQRVETGQVLADGPCTENGEMALGKNLL 709 Query: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 710 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 769 Query: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 840 LADLDERGI+RIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 770 LADLDERGIIRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 829 Query: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 830 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 889 Query: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGG-------IP 953 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW I +A +P Sbjct: 890 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIRLASDGADGSTEVP 949 Query: 954 DWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDG 1013 WA LPE +L A + IV+TPVFDGA+E ELQGLL +TLPNRDG+ MV DGKAVLFDG Sbjct: 950 AWAAKLPEHMLSAPADSIVATPVFDGAQEGELQGLLGATLPNRDGETMVNSDGKAVLFDG 1009 Query: 1014 RSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEC 1073 RSGEPFPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEC Sbjct: 1010 RSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEC 1069 Query: 1074 WAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCL 1133 WAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCL Sbjct: 1070 WAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCL 1129 Query: 1134 NVEVLSSDGAAIXXXXXXXXXXXXXXANLGINLSRNESASIEDLA 1178 NVEVLSSDGAAI ANLGINLSRNESAS+EDLA Sbjct: 1130 NVEVLSSDGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1174 >tr|Q6YI70|Q6YI70_MYCCH Tax_Id=1774 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium chelonae] Length = 1171 Score = 1998 bits (5176), Expect = 0.0 Identities = 1007/1147 (87%), Positives = 1051/1147 (91%), Gaps = 5/1147 (0%) Query: 34 GAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYEL 93 GAP+R+SFAKLREPL VPGLLDVQTDSFEWL+GSP WR A +RG++ P GGLEE+L EL Sbjct: 28 GAPSRLSFAKLREPLAVPGLLDVQTDSFEWLVGSPRWREVATARGEVNPTGGLEEILTEL 87 Query: 94 SPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 153 SPIEDFSGSMSLSFSDPRFDEVKAPV+ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF Sbjct: 88 SPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 147 Query: 154 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLE 213 MGDFPMMTE GTFIINGTERVVVSQLVRSPGVYFDE IDKSTEKTLHSVKVIP RGAWLE Sbjct: 148 MGDFPMMTEMGTFIINGTERVVVSQLVRSPGVYFDENIDKSTEKTLHSVKVIPGRGAWLE 207 Query: 214 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLEKDNTVGTDEA 273 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSEIM TLEKDN G DEA Sbjct: 208 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSEIMMGTLEKDNIAGPDEA 267 Query: 274 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGE--LITSS 331 LLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVGRYKVNKKLGL L+T++ Sbjct: 268 LLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVGRYKVNKKLGLGGANPALVTAT 327 Query: 332 TLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRV 391 TLTEEDVVATIEYLVRLHEGQ+TMT PGG+EVPVE DDIDHFGNRRLRTVGELIQNQIRV Sbjct: 328 TLTEEDVVATIEYLVRLHEGQTTMTAPGGLEVPVEVDDIDHFGNRRLRTVGELIQNQIRV 387 Query: 392 GMSXXXXXXXXXXXXQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 451 G+S QDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH Sbjct: 388 GLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 447 Query: 452 KRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 511 KRRLSALGPGGL+R+RAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF Sbjct: 448 KRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 507 Query: 512 IETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRFLEPRVLVRRKAGEVEYV 571 IETPYRKV +GVV+DEI YLTADEEDRHVVAQANSP+D GRF E ++LVRRK GEVE+V Sbjct: 508 IETPYRKVSEGVVTDEIHYLTADEEDRHVVAQANSPVDADGRFTEDKILVRRKGGEVEFV 567 Query: 572 ASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 631 +++EVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME Sbjct: 568 SATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 627 Query: 632 LRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTRRTYRMRKFARSNHGTCANQSPIVD 691 LRAAIDAG VVVAEK+GVIEEVSADY+TVMADDGTR++YR+RKFARSNHGTCANQ PIVD Sbjct: 628 LRAAIDAGDVVVAEKAGVIEEVSADYVTVMADDGTRQSYRLRKFARSNHGTCANQKPIVD 687 Query: 692 AGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIH 751 G RVE GQVIADGPCTENGEMALGKNLLVA+MPWEGHNYEDAIILSNRLVEEDVLTSIH Sbjct: 688 EGQRVEVGQVIADGPCTENGEMALGKNLLVAVMPWEGHNYEDAIILSNRLVEEDVLTSIH 747 Query: 752 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGX 811 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKG Sbjct: 748 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGE 807 Query: 812 XXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSHEDDDELPAGVNELVRV 871 AIFGEKAREVRDTSLKVPHGESGKVIGIRVFS +DDD+LPAGVNELVRV Sbjct: 808 TELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRDDDDDLPAGVNELVRV 867 Query: 872 YVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPVDIILNTHGVPRRMNVGQI 931 YVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPFLPDGTPVDIILNTHGVPRRMN+GQI Sbjct: 868 YVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIGQI 927 Query: 932 LETHLGWVAKSGWKIDVAGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLSS 991 LETHLGWVAK+GW I+ G P+WA NLPE+L A + +TPVFDGA+EEEL GLLSS Sbjct: 928 LETHLGWVAKTGWNIE---GNPEWAQNLPEDLQSAPADTRTATPVFDGAREEELTGLLSS 984 Query: 992 TLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSM 1051 TLPNRDG+VMV GDGKA LFDGRSGEPFPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSM Sbjct: 985 TLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSM 1044 Query: 1052 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1111 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN Sbjct: 1045 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1104 Query: 1112 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIXXXXXXXXXXXXXXANLGINLSRNES 1171 IPEPGIPESFKVLLKELQSLCLNVEVLS DGAAI ANLGINLSRNES Sbjct: 1105 IPEPGIPESFKVLLKELQSLCLNVEVLSKDGAAIEMRDGDDEDLERAAANLGINLSRNES 1164 Query: 1172 ASIEDLA 1178 ASIED A Sbjct: 1165 ASIEDFA 1171 >tr|Q6X0L5|Q6X0L5_9MYCO Tax_Id=83262 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium immunogenum] Length = 1171 Score = 1996 bits (5171), Expect = 0.0 Identities = 1005/1147 (87%), Positives = 1050/1147 (91%), Gaps = 5/1147 (0%) Query: 34 GAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYEL 93 GAPNR+SFAKLREPL VPGLLDVQTDSFEWL+GSP WR A +RG++ P GGLEE+L EL Sbjct: 28 GAPNRLSFAKLREPLAVPGLLDVQTDSFEWLVGSPRWREVATARGEVNPTGGLEEILTEL 87 Query: 94 SPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 153 SPIEDFSGSMSLSFSDPRFDEVKAPV+ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF Sbjct: 88 SPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 147 Query: 154 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLE 213 MGDFPMMT+ GTFIINGTERVVVSQLVRSPGVYFDE IDKSTEKTLHSVKVIP RGAWLE Sbjct: 148 MGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDENIDKSTEKTLHSVKVIPGRGAWLE 207 Query: 214 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLEKDNTVGTDEA 273 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSEIM TLEKDN G DEA Sbjct: 208 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSEIMMGTLEKDNIAGPDEA 267 Query: 274 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGE--LITSS 331 LLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVGRYKVNKKLGL +T++ Sbjct: 268 LLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVGRYKVNKKLGLGGTNPAQVTTT 327 Query: 332 TLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRV 391 TLTEEDVVATIEYLVRLHEGQ+TMT PGGVEVPV+ DDIDHFGNRRLRTVGELIQNQIRV Sbjct: 328 TLTEEDVVATIEYLVRLHEGQTTMTAPGGVEVPVDVDDIDHFGNRRLRTVGELIQNQIRV 387 Query: 392 GMSXXXXXXXXXXXXQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 451 G+S QDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH Sbjct: 388 GLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 447 Query: 452 KRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 511 KRRLSALGPGGL+R+RAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF Sbjct: 448 KRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 507 Query: 512 IETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRFLEPRVLVRRKAGEVEYV 571 IETPYRKV DGVV+DEI YLTADEEDRHVVAQANSP+D GRF E ++LVRRK GEVE+V Sbjct: 508 IETPYRKVSDGVVTDEIHYLTADEEDRHVVAQANSPVDANGRFTEEKILVRRKGGEVEFV 567 Query: 572 ASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 631 +++EVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME Sbjct: 568 SATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 627 Query: 632 LRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTRRTYRMRKFARSNHGTCANQSPIVD 691 LRAAIDAG VVVAEK+GVIEEVSADY+TVMADDGTR++YR+RKFARSNHGTCANQ PIVD Sbjct: 628 LRAAIDAGDVVVAEKAGVIEEVSADYVTVMADDGTRQSYRLRKFARSNHGTCANQKPIVD 687 Query: 692 AGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIH 751 G RVE GQV+ADGPCTENGEMALGKNLLVA+MPWEGHNYEDAIILSNRLVEEDVLTSIH Sbjct: 688 EGQRVEVGQVLADGPCTENGEMALGKNLLVAVMPWEGHNYEDAIILSNRLVEEDVLTSIH 747 Query: 752 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGX 811 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKG Sbjct: 748 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGE 807 Query: 812 XXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSHEDDDELPAGVNELVRV 871 AIFGEKAREVRDTSLKVPHGESGKVIGIRVFS +DDD+LPAGVNELVRV Sbjct: 808 TELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRDDDDDLPAGVNELVRV 867 Query: 872 YVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPVDIILNTHGVPRRMNVGQI 931 YVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPFLPDGTPVDIILNTHGVPRRMN+GQI Sbjct: 868 YVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIGQI 927 Query: 932 LETHLGWVAKSGWKIDVAGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLSS 991 LETHLGW+AK+GW I+ G P+WA NLPE+L A + +TPVFDGA+EEEL GLLSS Sbjct: 928 LETHLGWIAKTGWNIE---GDPEWAQNLPEDLQSAPADTRTATPVFDGAREEELTGLLSS 984 Query: 992 TLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSM 1051 TLPNRDG+VMV GDGKA LFDGRSGEPFPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSM Sbjct: 985 TLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSM 1044 Query: 1052 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1111 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN Sbjct: 1045 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1104 Query: 1112 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIXXXXXXXXXXXXXXANLGINLSRNES 1171 IPEPGIPESFKVLLKELQSLCLNVEVLS DGAAI ANLGINLSRNES Sbjct: 1105 IPEPGIPESFKVLLKELQSLCLNVEVLSKDGAAIEMRDGDDEDLERAAANLGINLSRNES 1164 Query: 1172 ASIEDLA 1178 ASIED A Sbjct: 1165 ASIEDFA 1171 >tr|Q6X0L4|Q6X0L4_MYCCH Tax_Id=1774 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium chelonae] Length = 1171 Score = 1995 bits (5169), Expect = 0.0 Identities = 1005/1147 (87%), Positives = 1051/1147 (91%), Gaps = 5/1147 (0%) Query: 34 GAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYEL 93 GAP+R+SFAKLREPL VPGLLDVQT+SFEWL+GSP WR A +RG++ P GGLEE+L EL Sbjct: 28 GAPSRLSFAKLREPLAVPGLLDVQTESFEWLVGSPRWREVATARGEVNPTGGLEEILTEL 87 Query: 94 SPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 153 SPIEDFSGSMSLSFSDPRFDEVKAPV+ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF Sbjct: 88 SPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 147 Query: 154 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLE 213 MGDFPMMT+ GTFIINGTERVVVSQLVRSPGVYFDE IDKSTEKTLHSVKVIP RGAWLE Sbjct: 148 MGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDENIDKSTEKTLHSVKVIPGRGAWLE 207 Query: 214 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLEKDNTVGTDEA 273 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSEIM TLEKDN G DEA Sbjct: 208 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSEIMMGTLEKDNIAGPDEA 267 Query: 274 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGE--LITSS 331 LLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVGRYKVNKKLGL L+T++ Sbjct: 268 LLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVGRYKVNKKLGLGGANPALVTAT 327 Query: 332 TLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRV 391 TLTEEDVVATIEYLVRLHEGQ+TMT PGG+EVPVE DDIDHFGNRRLRTVGELIQNQIRV Sbjct: 328 TLTEEDVVATIEYLVRLHEGQTTMTAPGGLEVPVEVDDIDHFGNRRLRTVGELIQNQIRV 387 Query: 392 GMSXXXXXXXXXXXXQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 451 G+S QDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH Sbjct: 388 GLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 447 Query: 452 KRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 511 KRRLSALGPGGL+R+RAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF Sbjct: 448 KRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 507 Query: 512 IETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRFLEPRVLVRRKAGEVEYV 571 IETPYRKV +GVV+DEI YLTADEEDRHVVAQANSP+D GRF E ++LVRRK GEVE+V Sbjct: 508 IETPYRKVSEGVVTDEIHYLTADEEDRHVVAQANSPVDADGRFTEDKILVRRKGGEVEFV 567 Query: 572 ASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 631 +++EVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME Sbjct: 568 SATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 627 Query: 632 LRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTRRTYRMRKFARSNHGTCANQSPIVD 691 LRAAIDAG VVVAEK+GVIEEVSADY+TVMADDGTR++YR+RKFARSNHGTCANQ PIVD Sbjct: 628 LRAAIDAGDVVVAEKAGVIEEVSADYVTVMADDGTRQSYRLRKFARSNHGTCANQKPIVD 687 Query: 692 AGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIH 751 G RVE GQVIADGPCTENGEMALGKNLLVA+MPWEGHNYEDAIILSNRLVEEDVLTSIH Sbjct: 688 EGQRVEVGQVIADGPCTENGEMALGKNLLVAVMPWEGHNYEDAIILSNRLVEEDVLTSIH 747 Query: 752 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGX 811 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKG Sbjct: 748 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGE 807 Query: 812 XXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSHEDDDELPAGVNELVRV 871 AIFGEKAREVRDTSLKVPHGESGKVIGIRVFS +DDD+LPAGVNELVRV Sbjct: 808 TELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRDDDDDLPAGVNELVRV 867 Query: 872 YVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPVDIILNTHGVPRRMNVGQI 931 YVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPFLPDGTPVDIILNTHGVPRRMN+GQI Sbjct: 868 YVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIGQI 927 Query: 932 LETHLGWVAKSGWKIDVAGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLSS 991 LETHLGWVAK+GW I+ G P+WA NLPE+L A + +TPVFDGA+EEEL GLLSS Sbjct: 928 LETHLGWVAKTGWNIE---GNPEWAQNLPEDLQSAPADTRTATPVFDGAREEELTGLLSS 984 Query: 992 TLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSM 1051 TLPNRDG+VMV GDGKA LFDGRSGEPFPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSM Sbjct: 985 TLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSM 1044 Query: 1052 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1111 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN Sbjct: 1045 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1104 Query: 1112 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIXXXXXXXXXXXXXXANLGINLSRNES 1171 IPEPGIPESFKVLLKELQSLCLNVEVLS DGAAI ANLGINLSRNES Sbjct: 1105 IPEPGIPESFKVLLKELQSLCLNVEVLSKDGAAIEMRDGDDEDLERAAANLGINLSRNES 1164 Query: 1172 ASIEDLA 1178 ASIED A Sbjct: 1165 ASIEDFA 1171 >tr|Q2M4U3|Q2M4U3_9MYCO Tax_Id=319705 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium bolletii] Length = 1171 Score = 1995 bits (5169), Expect = 0.0 Identities = 1005/1147 (87%), Positives = 1052/1147 (91%), Gaps = 5/1147 (0%) Query: 34 GAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYEL 93 GAP+R+SFAKLREPL VPGLLDVQT+SFEWL+GSP WR A +RG++ P GGLEE+L EL Sbjct: 28 GAPSRLSFAKLREPLAVPGLLDVQTESFEWLVGSPRWREVATARGEVNPTGGLEEILTEL 87 Query: 94 SPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 153 SPIEDFSGSMSLSFSDPRFDEVKAPV+ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF Sbjct: 88 SPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 147 Query: 154 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLE 213 MGDFPMMT+ GTFIINGTERVVVSQLVRSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLE Sbjct: 148 MGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLE 207 Query: 214 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLEKDNTVGTDEA 273 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSEIM TLEKDN G DEA Sbjct: 208 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSEIMMGTLEKDNIAGPDEA 267 Query: 274 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGE--LITSS 331 LLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVGRYKVNKKLGL +T++ Sbjct: 268 LLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVGRYKVNKKLGLGGTNPAQVTTT 327 Query: 332 TLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRV 391 TLTEEDVVATIEYLVRLHEGQ+TMT PGGVEVPV+ DDIDHFGNRRLRTVGELIQNQIRV Sbjct: 328 TLTEEDVVATIEYLVRLHEGQTTMTAPGGVEVPVDVDDIDHFGNRRLRTVGELIQNQIRV 387 Query: 392 GMSXXXXXXXXXXXXQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 451 G+S QDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH Sbjct: 388 GLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 447 Query: 452 KRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 511 KRRLSALGPGGL+R+RAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF Sbjct: 448 KRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 507 Query: 512 IETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRFLEPRVLVRRKAGEVEYV 571 IETPYRKV DGVV+DEI YLTADEEDRHVVAQANSP+D GRF E ++LVRRK GEVE+V Sbjct: 508 IETPYRKVSDGVVTDEIHYLTADEEDRHVVAQANSPVDANGRFTEEKILVRRKGGEVEFV 567 Query: 572 ASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 631 +++EVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME Sbjct: 568 SATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 627 Query: 632 LRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTRRTYRMRKFARSNHGTCANQSPIVD 691 LRAAIDAG VVVAEK+GVIEEVSADY+TVMADDGTR++YR+RKFARSNHGTCANQ PIVD Sbjct: 628 LRAAIDAGDVVVAEKAGVIEEVSADYVTVMADDGTRQSYRLRKFARSNHGTCANQKPIVD 687 Query: 692 AGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIH 751 G RVEAGQVIADGPCTENGEMALGKNLLVA+MPWEGHNYEDAIILSNRLVEEDVLTSIH Sbjct: 688 EGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWEGHNYEDAIILSNRLVEEDVLTSIH 747 Query: 752 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGX 811 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKG Sbjct: 748 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGE 807 Query: 812 XXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSHEDDDELPAGVNELVRV 871 AIFGEKAREVRDTSLKVPHGESGKVIGIRVFS +DDD+LPAGVNELVRV Sbjct: 808 TELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRDDDDDLPAGVNELVRV 867 Query: 872 YVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPVDIILNTHGVPRRMNVGQI 931 YVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPFLPDGTPVDIILNTHGVPRRMN+GQI Sbjct: 868 YVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIGQI 927 Query: 932 LETHLGWVAKSGWKIDVAGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLSS 991 LETHLGW+AK+GW I+ G P+WA NLPE+L A + +TPVFDGA+EEEL GLLSS Sbjct: 928 LETHLGWIAKTGWNIE---GDPEWAQNLPEDLQSAPADTRTATPVFDGAREEELTGLLSS 984 Query: 992 TLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSM 1051 TLPNRDG+VMV GDGKA LFDGRSGEPFPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSM Sbjct: 985 TLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSM 1044 Query: 1052 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1111 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN Sbjct: 1045 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1104 Query: 1112 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIXXXXXXXXXXXXXXANLGINLSRNES 1171 IPEPGIPESFKVLLKELQSLCLNVEVLS DGAAI ANLGINLSRNES Sbjct: 1105 IPEPGIPESFKVLLKELQSLCLNVEVLSKDGAAIEMRDGDDEDLERAAANLGINLSRNES 1164 Query: 1172 ASIEDLA 1178 ASIED A Sbjct: 1165 ASIEDFA 1171 >tr|Q2M4U2|Q2M4U2_9MYCO Tax_Id=319706 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium phocaicum] Length = 1167 Score = 1995 bits (5169), Expect = 0.0 Identities = 1004/1147 (87%), Positives = 1051/1147 (91%), Gaps = 5/1147 (0%) Query: 34 GAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYEL 93 GAPNR+SFAKLREPLEVPGLLDVQTDSFEWLIGS WR+ A RGD+ PVGGLEEVL EL Sbjct: 24 GAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSDRWRSKAVDRGDINPVGGLEEVLAEL 83 Query: 94 SPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 153 SPIEDF+G++SLSFSDPRFDEVKAPV+ECK+KD TYAAPLFVTAEFINNNTGEIKSQTVF Sbjct: 84 SPIEDFAGTLSLSFSDPRFDEVKAPVDECKEKDQTYAAPLFVTAEFINNNTGEIKSQTVF 143 Query: 154 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLE 213 MGDFPMMT+ GTFIINGTERVVVSQLVRSPGVYFDE IDKSTEKTLHSVKVIP RGAWLE Sbjct: 144 MGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDENIDKSTEKTLHSVKVIPGRGAWLE 203 Query: 214 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLEKDNTVGTDEA 273 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSEIM TLEKDN G DEA Sbjct: 204 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSEIMMGTLEKDNIAGPDEA 263 Query: 274 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGE--LITSS 331 LLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVGRYKVNKKLGL L+T++ Sbjct: 264 LLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVGRYKVNKKLGLGGANPALVTAT 323 Query: 332 TLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRV 391 TLTEEDVVATIEYLVRLHEGQ+TMT PGG+EVPVE DDIDHFGNRRLRTVGELIQNQIRV Sbjct: 324 TLTEEDVVATIEYLVRLHEGQTTMTAPGGLEVPVEVDDIDHFGNRRLRTVGELIQNQIRV 383 Query: 392 GMSXXXXXXXXXXXXQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 451 G+S QDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH Sbjct: 384 GLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 443 Query: 452 KRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 511 KRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF Sbjct: 444 KRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 503 Query: 512 IETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRFLEPRVLVRRKAGEVEYV 571 IETPYRKVVDG+V+D+I+YLTADEEDRHVVAQANSP+D G F E ++LVRRK GEVE+V Sbjct: 504 IETPYRKVVDGIVTDQIDYLTADEEDRHVVAQANSPLDANGHFTEEKILVRRKGGEVEFV 563 Query: 572 ASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 631 ++++VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME Sbjct: 564 SANDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 623 Query: 632 LRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTRRTYRMRKFARSNHGTCANQSPIVD 691 LRAAIDAG VVVA+KSGVIEEVSADY+TVMADDG+R TYRMRKF RSNHGTCANQ PIVD Sbjct: 624 LRAAIDAGDVVVADKSGVIEEVSADYVTVMADDGSRHTYRMRKFNRSNHGTCANQRPIVD 683 Query: 692 AGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIH 751 +G RVEAGQVIADGPCTENGEMALGKNLLVA+MPWEGHNYEDAIILS RLVE+DVLTSIH Sbjct: 684 SGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWEGHNYEDAIILSQRLVEQDVLTSIH 743 Query: 752 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGX 811 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKG Sbjct: 744 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGE 803 Query: 812 XXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSHEDDDELPAGVNELVRV 871 AIFGEKAREVRDTSLKVPHGESGKVIG+RVFS EDDD+LPAGVNELVRV Sbjct: 804 TELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGVRVFSREDDDDLPAGVNELVRV 863 Query: 872 YVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPVDIILNTHGVPRRMNVGQI 931 YVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPF+PDGTPVDIILNTHGVPRRMN+GQI Sbjct: 864 YVAQKRKISDGDKLAGRHGNKGVIGKILPIEDMPFMPDGTPVDIILNTHGVPRRMNIGQI 923 Query: 932 LETHLGWVAKSGWKIDVAGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLSS 991 LETHLGWVAK+GW I+ G P+WA NLPE + A + IV+TPVFDGA+E ELQGLL S Sbjct: 924 LETHLGWVAKAGWNIE---GEPEWAANLPEGMHSAPRDSIVATPVFDGARENELQGLLGS 980 Query: 992 TLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSM 1051 TLPNRDGDVMV DGKA LFDGRSGEPFPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSM Sbjct: 981 TLPNRDGDVMVDADGKATLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSM 1040 Query: 1052 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1111 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN Sbjct: 1041 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1100 Query: 1112 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIXXXXXXXXXXXXXXANLGINLSRNES 1171 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI ANLGINLSRNES Sbjct: 1101 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDSDDEDLERTAANLGINLSRNES 1160 Query: 1172 ASIEDLA 1178 AS+EDLA Sbjct: 1161 ASVEDLA 1167 >tr|Q6YI62|Q6YI62_9MYCO Tax_Id=56689 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium mucogenicum] Length = 1167 Score = 1995 bits (5168), Expect = 0.0 Identities = 1002/1147 (87%), Positives = 1053/1147 (91%), Gaps = 5/1147 (0%) Query: 34 GAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYEL 93 GAPNR+SFAKLREPLEVPGLLDVQTDSFEWLIGS WR+ A RGD+ PVGGLEEVL EL Sbjct: 24 GAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSDRWRSKAVDRGDINPVGGLEEVLAEL 83 Query: 94 SPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 153 SPIEDF+G++SLSFSDPRFDEVKAPV+ECK+KD TYAAPLFVTAEFINNNTGEIKSQTVF Sbjct: 84 SPIEDFAGTLSLSFSDPRFDEVKAPVDECKEKDQTYAAPLFVTAEFINNNTGEIKSQTVF 143 Query: 154 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLE 213 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE+IDK+TEKTLHSVKVIP RGAWLE Sbjct: 144 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDESIDKATEKTLHSVKVIPGRGAWLE 203 Query: 214 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLEKDNTVGTDEA 273 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSEIM TLEKD T G DEA Sbjct: 204 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIRERFGFSEIMMGTLEKDPTAGPDEA 263 Query: 274 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGE--LITSS 331 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLH G +T++ Sbjct: 264 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHDGNPAQVTAT 323 Query: 332 TLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRV 391 TLTEED+VATIEYLVRLH+G TMT PGGVEVPVE DDIDHFGNRRLRTVGELIQNQIRV Sbjct: 324 TLTEEDIVATIEYLVRLHDGDKTMTAPGGVEVPVEVDDIDHFGNRRLRTVGELIQNQIRV 383 Query: 392 GMSXXXXXXXXXXXXQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 451 G+S QDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH Sbjct: 384 GLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 443 Query: 452 KRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 511 KRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF Sbjct: 444 KRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 503 Query: 512 IETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRFLEPRVLVRRKAGEVEYV 571 IETPYRKVVDG+V+D+I+YLTADEEDRHVVAQANSP+D G F E ++LVRRK GEVE+V Sbjct: 504 IETPYRKVVDGIVTDQIDYLTADEEDRHVVAQANSPLDANGHFTEEKILVRRKGGEVEFV 563 Query: 572 ASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 631 ++++VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME Sbjct: 564 SANDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 623 Query: 632 LRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTRRTYRMRKFARSNHGTCANQSPIVD 691 LRAAIDAG VVVA+KSGVIEEVSADY+TVMADDG+R TYRMRKF RSNHGTCANQ PIVD Sbjct: 624 LRAAIDAGDVVVADKSGVIEEVSADYVTVMADDGSRHTYRMRKFNRSNHGTCANQRPIVD 683 Query: 692 AGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIH 751 +G RVEAGQVIADGPCTENGEMALGKNLLVA+MPWEGHNYEDAIILS RLVE+DVLTSIH Sbjct: 684 SGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWEGHNYEDAIILSQRLVEQDVLTSIH 743 Query: 752 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGX 811 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKG Sbjct: 744 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGE 803 Query: 812 XXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSHEDDDELPAGVNELVRV 871 AIFGEKAREVRDTSLKVPHGESGKVIG+RVFS EDDD+LPAGVNELVRV Sbjct: 804 TELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGVRVFSREDDDDLPAGVNELVRV 863 Query: 872 YVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPVDIILNTHGVPRRMNVGQI 931 YVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPF+PDGTPVDIILNTHGVPRRMN+GQI Sbjct: 864 YVAQKRKISDGDKLAGRHGNKGVIGKILPQEDMPFMPDGTPVDIILNTHGVPRRMNIGQI 923 Query: 932 LETHLGWVAKSGWKIDVAGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLSS 991 LETHLGWVAK+GW I+ G P+WA NLPE + A + IV+TPVFDGA+E ELQGLL + Sbjct: 924 LETHLGWVAKAGWNIE---GEPEWAANLPEGMRSAPRDSIVATPVFDGARENELQGLLGA 980 Query: 992 TLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSM 1051 TLPNRDG+VMV DGK+ LFDGRSGEPFPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSM Sbjct: 981 TLPNRDGEVMVDADGKSQLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSM 1040 Query: 1052 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1111 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN Sbjct: 1041 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1100 Query: 1112 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIXXXXXXXXXXXXXXANLGINLSRNES 1171 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI ANLGINLSRNES Sbjct: 1101 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDSDDEDLERTAANLGINLSRNES 1160 Query: 1172 ASIEDLA 1178 AS+EDLA Sbjct: 1161 ASVEDLA 1167 >tr|Q5QGG0|Q5QGG0_9MYCO Tax_Id=281216 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium massiliense] Length = 1171 Score = 1995 bits (5168), Expect = 0.0 Identities = 1004/1147 (87%), Positives = 1052/1147 (91%), Gaps = 5/1147 (0%) Query: 34 GAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYEL 93 GAP+R+SFAKLREPL VPGLLDVQT+SFEWL+GSP WR A +RG++ P GGLEE+L EL Sbjct: 28 GAPSRLSFAKLREPLAVPGLLDVQTESFEWLVGSPRWREVATARGEVNPTGGLEEILTEL 87 Query: 94 SPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 153 SPIEDFSGSMSLSFSDPRFDEVKAPV+ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF Sbjct: 88 SPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 147 Query: 154 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLE 213 MGDFPMMT+ GTFIINGTERVVVSQLVRSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLE Sbjct: 148 MGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLE 207 Query: 214 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLEKDNTVGTDEA 273 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSEIM TLEKDN G DEA Sbjct: 208 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSEIMMGTLEKDNIAGPDEA 267 Query: 274 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGE--LITSS 331 LLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVGRYKVNKKLGL +T++ Sbjct: 268 LLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVGRYKVNKKLGLGGTNPAQVTTT 327 Query: 332 TLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRV 391 TLTEEDVVATIEYLVRLHEGQ+TMT PGGVEVPV+ DDIDHFGNRRLRTVGELIQNQIRV Sbjct: 328 TLTEEDVVATIEYLVRLHEGQTTMTAPGGVEVPVDVDDIDHFGNRRLRTVGELIQNQIRV 387 Query: 392 GMSXXXXXXXXXXXXQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 451 G+S QDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH Sbjct: 388 GLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 447 Query: 452 KRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 511 KRRLSALGPGGL+R+RAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF Sbjct: 448 KRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 507 Query: 512 IETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRFLEPRVLVRRKAGEVEYV 571 IETPYRKV DGVV+DEI YLTADEEDRHVVAQANSP+D GRF E ++LVRRK GEVE+V Sbjct: 508 IETPYRKVSDGVVTDEIHYLTADEEDRHVVAQANSPVDANGRFTEEKILVRRKGGEVEFV 567 Query: 572 ASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 631 +++EVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME Sbjct: 568 SATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 627 Query: 632 LRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTRRTYRMRKFARSNHGTCANQSPIVD 691 LRAAIDAG VVVAEK+GVIEEVSADY+TVMADDGTR++YR+RKFARSNHGTCANQ PIVD Sbjct: 628 LRAAIDAGDVVVAEKAGVIEEVSADYVTVMADDGTRQSYRLRKFARSNHGTCANQKPIVD 687 Query: 692 AGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIH 751 G RVEAGQV+ADGPCTENGEMALGKNLLVA+MPWEGHNYEDAIILSNRLVEEDVLTSIH Sbjct: 688 EGQRVEAGQVVADGPCTENGEMALGKNLLVAVMPWEGHNYEDAIILSNRLVEEDVLTSIH 747 Query: 752 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGX 811 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKG Sbjct: 748 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGE 807 Query: 812 XXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSHEDDDELPAGVNELVRV 871 AIFGEKAREVRDTSLKVPHGESGKVIGIRVFS +DDD+LPAGVNELVRV Sbjct: 808 TELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRDDDDDLPAGVNELVRV 867 Query: 872 YVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPVDIILNTHGVPRRMNVGQI 931 YVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPFLPDGTPVDIILNTHGVPRRMN+GQI Sbjct: 868 YVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIGQI 927 Query: 932 LETHLGWVAKSGWKIDVAGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLSS 991 LETHLGW+AK+GW I+ G P+WA NLPE+L A + +TPVFDGA+EEEL GLLSS Sbjct: 928 LETHLGWIAKTGWNIE---GDPEWAQNLPEDLQSAPADTRTATPVFDGAREEELTGLLSS 984 Query: 992 TLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSM 1051 TLPNRDG+VMV GDGKA LFDGRSGEPFPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSM Sbjct: 985 TLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSM 1044 Query: 1052 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1111 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN Sbjct: 1045 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1104 Query: 1112 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIXXXXXXXXXXXXXXANLGINLSRNES 1171 IPEPGIPESFKVLLKELQSLCLNVEVLS DGAAI ANLGINLSRNES Sbjct: 1105 IPEPGIPESFKVLLKELQSLCLNVEVLSKDGAAIEMRDGDDEDLERAAANLGINLSRNES 1164 Query: 1172 ASIEDLA 1178 ASIED A Sbjct: 1165 ASIEDFA 1171 >tr|Q2M4U1|Q2M4U1_9MYCO Tax_Id=319707 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium aubagnense] Length = 1172 Score = 1995 bits (5168), Expect = 0.0 Identities = 1003/1149 (87%), Positives = 1053/1149 (91%), Gaps = 4/1149 (0%) Query: 34 GAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYEL 93 GAPNR+SFAKLREPLEVPGLLDVQTDSFEWLIGS WRA A RGD+ PVGGLEEVL EL Sbjct: 24 GAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSDRWRAKAVDRGDINPVGGLEEVLAEL 83 Query: 94 SPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 153 SPIEDF+G++SLSFSDPRFDEVKAPV+ECK+KD TYAAPLFVTAEFINN TGEIKSQTVF Sbjct: 84 SPIEDFAGTLSLSFSDPRFDEVKAPVDECKEKDQTYAAPLFVTAEFINNTTGEIKSQTVF 143 Query: 154 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLE 213 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE+IDK+TEKTLHSVKVIP RGAWLE Sbjct: 144 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDESIDKATEKTLHSVKVIPGRGAWLE 203 Query: 214 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLEKDNTVGTDEA 273 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQI ERFGFSEIM TLEKD T G DEA Sbjct: 204 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIRERFGFSEIMMGTLEKDPTAGPDEA 263 Query: 274 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGE--LITSS 331 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLH G +T++ Sbjct: 264 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHDGNPAQVTAT 323 Query: 332 TLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRV 391 TLTEED+VATIEYLVRLH+G + MT PGGVEVPVE DDIDHFGNRRLRTVGELIQNQIRV Sbjct: 324 TLTEEDIVATIEYLVRLHDGDTKMTAPGGVEVPVEVDDIDHFGNRRLRTVGELIQNQIRV 383 Query: 392 GMSXXXXXXXXXXXXQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 451 G+S QDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH Sbjct: 384 GLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 443 Query: 452 KRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 511 KRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF Sbjct: 444 KRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 503 Query: 512 IETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRFLEPRVLVRRKAGEVEYV 571 IETPYRKVVDGVV+D+I+YLTADEEDRHVVAQANSP+D+ G F E ++LVRRK GEVE+V Sbjct: 504 IETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANSPLDDGGHFTEDKILVRRKGGEVEFV 563 Query: 572 ASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 631 ++++VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME Sbjct: 564 SANDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 623 Query: 632 LRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTRRTYRMRKFARSNHGTCANQSPIVD 691 LRAAIDAG VVVA+KSGVIEEVSADY+TVMADDG+R TYRMRKF RSNHGTCANQ PIVD Sbjct: 624 LRAAIDAGDVVVADKSGVIEEVSADYVTVMADDGSRHTYRMRKFNRSNHGTCANQRPIVD 683 Query: 692 AGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIH 751 +G RVEAGQVIADGPCTENGEMALGKNLLVA+MPWEGHNYEDAIILS RLVE+DVLTSIH Sbjct: 684 SGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWEGHNYEDAIILSQRLVEQDVLTSIH 743 Query: 752 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGX 811 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKG Sbjct: 744 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGE 803 Query: 812 XXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSHEDDDELPAGVNELVRV 871 AIFGEKAREVRDTSLKVPHGESGKVIG+RVFS EDDD+LPAGVNELVRV Sbjct: 804 TELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGVRVFSREDDDDLPAGVNELVRV 863 Query: 872 YVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPVDIILNTHGVPRRMNVGQI 931 YVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPF+PDGTPVDIILNTHGVPRRMN+GQI Sbjct: 864 YVAQKRKISDGDKLAGRHGNKGVIGKILPQEDMPFMPDGTPVDIILNTHGVPRRMNIGQI 923 Query: 932 LETHLGWVAKSGWKI--DVAGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLL 989 LETHLGWVAK+GW I D G P+WA NLP+ + A + IV+TPVFDGA+E EL+GLL Sbjct: 924 LETHLGWVAKAGWNIEADANGAYPEWAANLPDGMHSAPRDSIVATPVFDGAREGELEGLL 983 Query: 990 SSTLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPY 1049 STLPNRDGDVMV +GK+ LFDGRSGEPFPYPVTVGYMYI+KLHHLVDDKIHARSTGPY Sbjct: 984 GSTLPNRDGDVMVDAEGKSQLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPY 1043 Query: 1050 SMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKG 1109 SMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKG Sbjct: 1044 SMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKG 1103 Query: 1110 ENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIXXXXXXXXXXXXXXANLGINLSRN 1169 ENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI ANLGINLSRN Sbjct: 1104 ENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDSDDEDLERTAANLGINLSRN 1163 Query: 1170 ESASIEDLA 1178 ESAS+EDLA Sbjct: 1164 ESASVEDLA 1172 >tr|Q6X0L3|Q6X0L3_MYCAB Tax_Id=36809 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium abscessus] Length = 1171 Score = 1994 bits (5166), Expect = 0.0 Identities = 1004/1147 (87%), Positives = 1051/1147 (91%), Gaps = 5/1147 (0%) Query: 34 GAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYEL 93 GAP+R+SFAKLREPL VPGLLDVQT+SFEWL+GSP WR A +RG++ P GGLEE+L EL Sbjct: 28 GAPSRLSFAKLREPLAVPGLLDVQTESFEWLVGSPRWREVATARGEVNPTGGLEEILTEL 87 Query: 94 SPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 153 SPIEDFSGSMSLSFSDPRFDEVKAPV+ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF Sbjct: 88 SPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 147 Query: 154 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLE 213 MGDFPMMT+ GTFIINGTERVVVSQLVRSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLE Sbjct: 148 MGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLE 207 Query: 214 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLEKDNTVGTDEA 273 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSEIM TLEKDN G DEA Sbjct: 208 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSEIMMGTLEKDNIAGPDEA 267 Query: 274 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGE--LITSS 331 LLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVGRYKVNKKLGL +T++ Sbjct: 268 LLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVGRYKVNKKLGLGGTNPAQVTTT 327 Query: 332 TLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRV 391 TLTEEDVVATIEYLVRLHEGQ+TMT PGGVEVPV+ DDIDHFGNRRLRTVGELIQNQIRV Sbjct: 328 TLTEEDVVATIEYLVRLHEGQTTMTAPGGVEVPVDVDDIDHFGNRRLRTVGELIQNQIRV 387 Query: 392 GMSXXXXXXXXXXXXQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 451 G+S QDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH Sbjct: 388 GLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 447 Query: 452 KRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 511 KRRLSALGPGGL+R+RAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF Sbjct: 448 KRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 507 Query: 512 IETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRFLEPRVLVRRKAGEVEYV 571 IETPYRKV DGVV+DEI YLTADEEDRHVVAQANSP+D GRF E ++LVRRK GEVE+V Sbjct: 508 IETPYRKVSDGVVTDEIHYLTADEEDRHVVAQANSPVDANGRFTEEKILVRRKGGEVEFV 567 Query: 572 ASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 631 +++EVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME Sbjct: 568 SATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 627 Query: 632 LRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTRRTYRMRKFARSNHGTCANQSPIVD 691 LRAAIDAG VVVAEK+GVIEEVSADY+TVMADDGTR++YR+RKFARSNHGTCANQ PIVD Sbjct: 628 LRAAIDAGDVVVAEKAGVIEEVSADYVTVMADDGTRQSYRLRKFARSNHGTCANQKPIVD 687 Query: 692 AGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIH 751 G RVEAGQVIADGPCTENGEMALGKNLLVA+MPWEGHNYEDAIILSNRLVEEDVLTSIH Sbjct: 688 EGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWEGHNYEDAIILSNRLVEEDVLTSIH 747 Query: 752 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGX 811 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKG Sbjct: 748 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGE 807 Query: 812 XXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSHEDDDELPAGVNELVRV 871 AIFGEKAREVRDTSLKVPHGESGKVIGIRVFS +DDD+LPAGVNELVRV Sbjct: 808 TELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRDDDDDLPAGVNELVRV 867 Query: 872 YVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPVDIILNTHGVPRRMNVGQI 931 YVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPFLPDGTPVDIILNTHGVPRRMN+GQI Sbjct: 868 YVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIGQI 927 Query: 932 LETHLGWVAKSGWKIDVAGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLSS 991 LETHLGW+AK+GW I+ G P+WA NLP +L A + +TPVFDGA+EEEL GLLSS Sbjct: 928 LETHLGWIAKTGWNIE---GEPEWAANLPADLTSAPADTRTATPVFDGAREEELTGLLSS 984 Query: 992 TLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSM 1051 TLPNRDG+VMV GDGKA LFDGRSGEPFPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSM Sbjct: 985 TLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSM 1044 Query: 1052 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1111 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN Sbjct: 1045 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1104 Query: 1112 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIXXXXXXXXXXXXXXANLGINLSRNES 1171 IPEPGIPESFKVLLKELQSLCLNVEVLS DGAAI ANLGINLSRNES Sbjct: 1105 IPEPGIPESFKVLLKELQSLCLNVEVLSKDGAAIEMRDGDDEDLERAAANLGINLSRNES 1164 Query: 1172 ASIEDLA 1178 ASIED A Sbjct: 1165 ASIEDFA 1171 >tr|B1MH62|B1MH62_MYCA9 Tax_Id=561007 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium abscessus] Length = 1171 Score = 1993 bits (5163), Expect = 0.0 Identities = 1003/1147 (87%), Positives = 1051/1147 (91%), Gaps = 5/1147 (0%) Query: 34 GAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYEL 93 GAP+R+SFAKLREPL VPGLLDVQT+SFEWL+GSP WR A +RG++ P GGLEE+L EL Sbjct: 28 GAPSRLSFAKLREPLAVPGLLDVQTESFEWLVGSPRWREVATARGEVNPTGGLEEILTEL 87 Query: 94 SPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 153 SPIEDFSGSMSLSFSDPRFDEVKAPV+ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF Sbjct: 88 SPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 147 Query: 154 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLE 213 MGDFPMMT+ GTFIINGTERVVVSQLVRSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLE Sbjct: 148 MGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLE 207 Query: 214 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLEKDNTVGTDEA 273 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSEIM TLEKDN G DEA Sbjct: 208 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSEIMMGTLEKDNIAGPDEA 267 Query: 274 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGE--LITSS 331 LLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVGRYKVNKKLGL +T++ Sbjct: 268 LLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVGRYKVNKKLGLGGTNPAQVTTT 327 Query: 332 TLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRV 391 TLTEEDVVATIEYLVRLHEGQ+TMT PGGVEVPV+ DDIDHFGNRRLRTVGELIQNQIRV Sbjct: 328 TLTEEDVVATIEYLVRLHEGQTTMTAPGGVEVPVDVDDIDHFGNRRLRTVGELIQNQIRV 387 Query: 392 GMSXXXXXXXXXXXXQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 451 G+S QDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH Sbjct: 388 GLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 447 Query: 452 KRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 511 KRRLSALGPGGL+R+RAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF Sbjct: 448 KRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 507 Query: 512 IETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRFLEPRVLVRRKAGEVEYV 571 IETPYRKV DGVV+D+I YLTADEEDRHVVAQANSP+D GRF E ++LVRRK GEVE+V Sbjct: 508 IETPYRKVSDGVVTDDIHYLTADEEDRHVVAQANSPVDANGRFTEEKILVRRKGGEVEFV 567 Query: 572 ASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 631 +++EVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME Sbjct: 568 SATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 627 Query: 632 LRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTRRTYRMRKFARSNHGTCANQSPIVD 691 LRAAIDAG VVVAEK+GVIEEVSADY+TVMADDGTR++YR+RKFARSNHGTCANQ PIVD Sbjct: 628 LRAAIDAGDVVVAEKAGVIEEVSADYVTVMADDGTRQSYRLRKFARSNHGTCANQKPIVD 687 Query: 692 AGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIH 751 G RVEAGQVIADGPCTENGEMALGKNLLVA+MPWEGHNYEDAIILSNRLVEEDVLTSIH Sbjct: 688 EGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWEGHNYEDAIILSNRLVEEDVLTSIH 747 Query: 752 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGX 811 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKG Sbjct: 748 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGE 807 Query: 812 XXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSHEDDDELPAGVNELVRV 871 AIFGEKAREVRDTSLKVPHGESGKVIGIRVFS +DDD+LPAGVNELVRV Sbjct: 808 TELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRDDDDDLPAGVNELVRV 867 Query: 872 YVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPVDIILNTHGVPRRMNVGQI 931 YVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPFLPDGTPVDIILNTHGVPRRMN+GQI Sbjct: 868 YVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIGQI 927 Query: 932 LETHLGWVAKSGWKIDVAGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLSS 991 LETHLGW+AK+GW I+ G P+WA NLP +L A + +TPVFDGA+EEEL GLLSS Sbjct: 928 LETHLGWIAKTGWNIE---GEPEWAANLPADLTSAPADTRTATPVFDGAREEELTGLLSS 984 Query: 992 TLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSM 1051 TLPNRDG+VMV GDGKA LFDGRSGEPFPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSM Sbjct: 985 TLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSM 1044 Query: 1052 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1111 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN Sbjct: 1045 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1104 Query: 1112 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIXXXXXXXXXXXXXXANLGINLSRNES 1171 IPEPGIPESFKVLLKELQSLCLNVEVLS DGAAI ANLGINLSRNES Sbjct: 1105 IPEPGIPESFKVLLKELQSLCLNVEVLSKDGAAIEMRDGDDEDLERAAANLGINLSRNES 1164 Query: 1172 ASIEDLA 1178 ASIED A Sbjct: 1165 ASIEDFA 1171 >tr|Q6YI69|Q6YI69_MYCAB Tax_Id=36809 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium abscessus] Length = 1171 Score = 1993 bits (5163), Expect = 0.0 Identities = 1003/1147 (87%), Positives = 1051/1147 (91%), Gaps = 5/1147 (0%) Query: 34 GAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYEL 93 GAP+R+SFAKLREPL VPGLLDVQT+SFEWL+GSP WR A +RG++ P GGLEE+L EL Sbjct: 28 GAPSRLSFAKLREPLAVPGLLDVQTESFEWLVGSPRWREVATARGEVNPTGGLEEILTEL 87 Query: 94 SPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 153 SPIEDFSGSMSLSFSDPRFDEVKAPV+ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF Sbjct: 88 SPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 147 Query: 154 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLE 213 MGDFPMMT+ GTFIINGTERVVVSQLVRSPGVYFDE+IDKSTEKTLHSVKVIP RGAWLE Sbjct: 148 MGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDESIDKSTEKTLHSVKVIPGRGAWLE 207 Query: 214 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLEKDNTVGTDEA 273 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSEIM TLEKDN G DEA Sbjct: 208 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSEIMMGTLEKDNIAGPDEA 267 Query: 274 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGE--LITSS 331 LLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVGRYKVNKKLGL +T++ Sbjct: 268 LLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVGRYKVNKKLGLGGTNPAQVTTT 327 Query: 332 TLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRV 391 TLTEEDVVATIEYLVRLHEGQ+TMT PGGVEVPV+ DDIDHFGNRRLRTVGELIQNQIRV Sbjct: 328 TLTEEDVVATIEYLVRLHEGQTTMTAPGGVEVPVDVDDIDHFGNRRLRTVGELIQNQIRV 387 Query: 392 GMSXXXXXXXXXXXXQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 451 G+S QDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH Sbjct: 388 GLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 447 Query: 452 KRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 511 KRRLSALGPGGL+R+RAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF Sbjct: 448 KRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 507 Query: 512 IETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRFLEPRVLVRRKAGEVEYV 571 IETPYRKV DGVV+D+I YLTADEEDRHVVAQANSP+D GRF E ++LVRRK GEVE+V Sbjct: 508 IETPYRKVSDGVVTDDIHYLTADEEDRHVVAQANSPVDANGRFTEEKILVRRKGGEVEFV 567 Query: 572 ASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 631 +++EVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME Sbjct: 568 SATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 627 Query: 632 LRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTRRTYRMRKFARSNHGTCANQSPIVD 691 LRAAIDAG VVVAEK+GVIEEVSADY+TVMADDGTR++YR+RKFARSNHGTCANQ PIVD Sbjct: 628 LRAAIDAGDVVVAEKAGVIEEVSADYVTVMADDGTRQSYRLRKFARSNHGTCANQKPIVD 687 Query: 692 AGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIH 751 G RVEAGQVIADGPCTENGEMALGKNLLVA+MPWEGHNYEDAIILSNRLVEEDVLTSIH Sbjct: 688 EGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWEGHNYEDAIILSNRLVEEDVLTSIH 747 Query: 752 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGX 811 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKG Sbjct: 748 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGE 807 Query: 812 XXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSHEDDDELPAGVNELVRV 871 AIFGEKAREVRDTSLKVPHGESGKVIGIRVFS +DDD+LPAGVNELVRV Sbjct: 808 TELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRDDDDDLPAGVNELVRV 867 Query: 872 YVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPVDIILNTHGVPRRMNVGQI 931 YVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPFLPDGTPVDIILNTHGVPRRMN+GQI Sbjct: 868 YVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIGQI 927 Query: 932 LETHLGWVAKSGWKIDVAGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLSS 991 LETHLGW+AK+GW I+ G P+WA NLP +L A + +TPVFDGA+EEEL GLLSS Sbjct: 928 LETHLGWIAKTGWNIE---GEPEWAANLPADLTSAPADTRTATPVFDGAREEELTGLLSS 984 Query: 992 TLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSM 1051 TLPNRDG+VMV GDGKA LFDGRSGEPFPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSM Sbjct: 985 TLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSM 1044 Query: 1052 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1111 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN Sbjct: 1045 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1104 Query: 1112 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIXXXXXXXXXXXXXXANLGINLSRNES 1171 IPEPGIPESFKVLLKELQSLCLNVEVLS DGAAI ANLGINLSRNES Sbjct: 1105 IPEPGIPESFKVLLKELQSLCLNVEVLSKDGAAIEMRDGDDEDLERAAANLGINLSRNES 1164 Query: 1172 ASIEDLA 1178 ASIED A Sbjct: 1165 ASIEDFA 1171 >tr|Q6YI63|Q6YI63_9MYCO Tax_Id=56689 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium mucogenicum] Length = 1167 Score = 1992 bits (5161), Expect = 0.0 Identities = 1001/1147 (87%), Positives = 1052/1147 (91%), Gaps = 5/1147 (0%) Query: 34 GAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYEL 93 GAPNR+SFAKLREPLEVPGLLDVQTDSFEWLIGS WR+ A RGD+ PVGGLEEVL EL Sbjct: 24 GAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSDRWRSKAVDRGDINPVGGLEEVLAEL 83 Query: 94 SPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVF 153 SPIEDF+G++SLSFSDPRFDEVKAPV+ECK+KD TYAAPLFVTAEFINN TGEIKSQTVF Sbjct: 84 SPIEDFAGTLSLSFSDPRFDEVKAPVDECKEKDQTYAAPLFVTAEFINNTTGEIKSQTVF 143 Query: 154 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLE 213 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE+IDK+TEKTLHSVKVIP RGAWLE Sbjct: 144 MGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDESIDKATEKTLHSVKVIPGRGAWLE 203 Query: 214 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLEKDNTVGTDEA 273 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSEIM TLEKD T G DEA Sbjct: 204 FDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIRERFGFSEIMMGTLEKDPTAGPDEA 263 Query: 274 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGE--LITSS 331 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLH G +T++ Sbjct: 264 LLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHDGNPAQVTAT 323 Query: 332 TLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRV 391 TLTEED+VATIEYLVRLH+G + MT PGGVEVPVE DDIDHFGNRRLRTVGELIQNQIRV Sbjct: 324 TLTEEDIVATIEYLVRLHDGDTKMTAPGGVEVPVEVDDIDHFGNRRLRTVGELIQNQIRV 383 Query: 392 GMSXXXXXXXXXXXXQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 451 G+S QDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH Sbjct: 384 GLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 443 Query: 452 KRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 511 KRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF Sbjct: 444 KRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 503 Query: 512 IETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRFLEPRVLVRRKAGEVEYV 571 IETPYRKVVDG+V+D+I+YLTADEEDRHVVAQANSP+D G F E ++LVRRK GEVE+V Sbjct: 504 IETPYRKVVDGIVTDQIDYLTADEEDRHVVAQANSPLDANGHFTEEKILVRRKGGEVEFV 563 Query: 572 ASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 631 ++++VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME Sbjct: 564 SANDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 623 Query: 632 LRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTRRTYRMRKFARSNHGTCANQSPIVD 691 LRAAIDAG VVVA+KSGVIEEVSADY+TVMADDG+R TYRMRKF RSNHGTCANQ PIVD Sbjct: 624 LRAAIDAGDVVVADKSGVIEEVSADYVTVMADDGSRHTYRMRKFNRSNHGTCANQRPIVD 683 Query: 692 AGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIH 751 +G RVEAGQVIADGPCTENGEMALGKNLLVA+MPWEGHNYEDAIILS RLVE+DVLTSIH Sbjct: 684 SGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWEGHNYEDAIILSQRLVEQDVLTSIH 743 Query: 752 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGX 811 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKG Sbjct: 744 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGE 803 Query: 812 XXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSHEDDDELPAGVNELVRV 871 AIFGEKAREVRDTSLKVPHGESGKVIG+RVFS EDDD+LPAGVNELVRV Sbjct: 804 TELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGVRVFSREDDDDLPAGVNELVRV 863 Query: 872 YVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPVDIILNTHGVPRRMNVGQI 931 YVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPF+PDGTPVDIILNTHGVPRRMN+GQI Sbjct: 864 YVAQKRKISDGDKLAGRHGNKGVIGKILPQEDMPFMPDGTPVDIILNTHGVPRRMNIGQI 923 Query: 932 LETHLGWVAKSGWKIDVAGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLSS 991 LETHLGWVAK+GW I+ G P+WA NLPE + A + IV+TPVFDGA+E ELQGLL + Sbjct: 924 LETHLGWVAKAGWNIE---GEPEWAANLPEGMRSAPRDSIVATPVFDGARENELQGLLGA 980 Query: 992 TLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSM 1051 TLPNRDGDVMV DGK+ LFDGRSGEPFPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSM Sbjct: 981 TLPNRDGDVMVDADGKSQLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSM 1040 Query: 1052 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1111 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN Sbjct: 1041 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1100 Query: 1112 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIXXXXXXXXXXXXXXANLGINLSRNES 1171 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI ANLGINLSRNES Sbjct: 1101 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDSDDEDLERTAANLGINLSRNES 1160 Query: 1172 ASIEDLA 1178 AS+EDLA Sbjct: 1161 ASVEDLA 1167 Database: Amellifera_nr Posted date: Jan 15, 2010 5:10 AM Number of letters in database: 3,808,957,724 Number of sequences in database: 11,153,314 Lambda K H 0.316 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11153314 Number of Hits to DB: 8,613,654,474 Number of extensions: 384314361 Number of successful extensions: 893546 Number of sequences better than 10.0: 14382 Number of HSP's gapped: 862699 Number of HSP's successfully gapped: 20222 Length of query: 1178 Length of database: 3,808,957,724 Length adjustment: 149 Effective length of query: 1029 Effective length of database: 2,147,113,938 Effective search space: 2209380242202 Effective search space used: 2209380242202 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 86 (37.7 bits)