BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ML1955c
         (249 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,153,314 sequences; 3,808,957,724 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|B8ZSH4|B8ZSH4_MYCLB Tax_Id=561304 (truA)RecName: Full=Pseudou...   462   e-128
sp|Q9X796|TRUA_MYCLE Tax_Id=1769 (truA)RecName: Full=tRNA pseudo...   461   e-128
sp|P65846|TRUA_MYCTU Tax_Id=1773 (truA)RecName: Full=tRNA pseudo...   364   4e-99
sp|P65847|TRUA_MYCBO Tax_Id=1765 (truA)RecName: Full=tRNA pseudo...   364   4e-99
tr|C6DLX6|C6DLX6_MYCTK Tax_Id=478434 RecName: Full=Pseudouridyla...   364   4e-99
tr|C1AHR3|C1AHR3_MYCBT Tax_Id=561275 (truA)RecName: Full=Pseudou...   364   4e-99
tr|A5U8D1|A5U8D1_MYCTA Tax_Id=419947 (truA)RecName: Full=Pseudou...   364   4e-99
tr|A1KPE1|A1KPE1_MYCBP Tax_Id=410289 (truA)RecName: Full=Pseudou...   364   4e-99
tr|A5WT28|A5WT28_MYCTF Tax_Id=336982 RecName: Full=Pseudouridyla...   364   4e-99
tr|A4KLX9|A4KLX9_MYCTU Tax_Id=395095 RecName: Full=Pseudouridyla...   364   4e-99
tr|A2VPN3|A2VPN3_MYCTU Tax_Id=348776 RecName: Full=Pseudouridyla...   364   4e-99
sp|Q73S41|TRUA_MYCPA Tax_Id=1770 (truA)RecName: Full=tRNA pseudo...   355   2e-96
tr|A0QKU3|A0QKU3_MYCA1 Tax_Id=243243 (truA)RecName: Full=Pseudou...   353   1e-95
tr|A0PMB9|A0PMB9_MYCUA Tax_Id=362242 (truA)RecName: Full=Pseudou...   347   7e-94
tr|B2HCX6|B2HCX6_MYCMM Tax_Id=216594 (truA)RecName: Full=Pseudou...   327   1e-87
tr|Q1BD06|Q1BD06_MYCSS Tax_Id=164756 RecName: Full=Pseudouridyla...   324   6e-87
tr|A3PVM0|A3PVM0_MYCSJ Tax_Id=164757 RecName: Full=Pseudouridyla...   324   6e-87
tr|A1UBY7|A1UBY7_MYCSK Tax_Id=189918 RecName: Full=Pseudouridyla...   324   6e-87
tr|A4TEJ1|A4TEJ1_MYCGI Tax_Id=350054 RecName: Full=Pseudouridyla...   313   1e-83
tr|A0QSM0|A0QSM0_MYCS2 Tax_Id=246196 (truA)RecName: Full=Pseudou...   307   6e-82
tr|A1T522|A1T522_MYCVP Tax_Id=350058 RecName: Full=Pseudouridyla...   306   1e-81
tr|B1MG97|B1MG97_MYCA9 Tax_Id=561007 RecName: Full=Pseudouridyla...   285   2e-75
tr|Q0S3E5|Q0S3E5_RHOSR Tax_Id=101510 RecName: Full=Pseudouridyla...   249   1e-64
tr|D0L2F0|D0L2F0_9ACTO Tax_Id=526226 SubName: Full=tRNA pseudour...   244   6e-63
tr|C6WLZ4|C6WLZ4_ACTMD Tax_Id=446462 RecName: Full=Pseudouridyla...   242   3e-62
sp|Q5Z1K7|TRUA_NOCFA Tax_Id=37329 (truA)RecName: Full=tRNA pseud...   240   1e-61
tr|C1B043|C1B043_RHOOB Tax_Id=632772 (truA)RecName: Full=Pseudou...   239   2e-61
tr|C0ZW56|C0ZW56_RHOE4 Tax_Id=234621 (truA)RecName: Full=Pseudou...   238   4e-61
tr|C3JGZ4|C3JGZ4_RHOER Tax_Id=596309 (truA)RecName: Full=Pseudou...   238   4e-61
tr|C2AM23|C2AM23_TSUPA Tax_Id=521096 RecName: Full=Pseudouridyla...   238   4e-61
tr|A4FPJ0|A4FPJ0_SACEN Tax_Id=405948 (truA)RecName: Full=Pseudou...   233   2e-59
tr|C7MTX7|C7MTX7_SACVD Tax_Id=471857 RecName: Full=Pseudouridyla...   225   4e-57
tr|C0U7Z3|C0U7Z3_9ACTO Tax_Id=526225 RecName: Full=Pseudouridyla...   225   4e-57
tr|C8XCL6|C8XCL6_NAKMY Tax_Id=479431 SubName: Full=tRNA pseudour...   223   1e-56
tr|C8RUH0|C8RUH0_CORJE Tax_Id=525262 (truA)SubName: Full=tRNA ps...   215   3e-54
tr|Q4JTC5|Q4JTC5_CORJK Tax_Id=306537 (truA)RecName: Full=Pseudou...   214   7e-54
tr|C4LKY3|C4LKY3_CORK4 Tax_Id=645127 (truA)RecName: Full=Pseudou...   213   1e-53
tr|C5VEY4|C5VEY4_9CORY Tax_Id=553207 (truA)RecName: Full=Pseudou...   211   8e-53
tr|C2CQ41|C2CQ41_CORST Tax_Id=525268 (truA)RecName: Full=Pseudou...   211   8e-53
tr|C0E0J5|C0E0J5_9CORY Tax_Id=566549 RecName: Full=Pseudouridyla...   211   8e-53
sp|Q8FS31|TRUA_COREF Tax_Id=152794 (truA)RecName: Full=tRNA pseu...   209   2e-52
tr|C8NMD3|C8NMD3_COREF Tax_Id=196164 (truA)SubName: Full=tRNA ps...   209   2e-52
sp|P60349|TRUA_CORDI Tax_Id=1717 (truA)RecName: Full=tRNA pseudo...   209   3e-52
tr|C6R9B4|C6R9B4_9CORY Tax_Id=553206 (truA)RecName: Full=Pseudou...   208   5e-52
tr|C2BK37|C2BK37_9CORY Tax_Id=525264 (truA)RecName: Full=Pseudou...   208   5e-52
tr|B1VEY4|B1VEY4_CORU7 Tax_Id=504474 RecName: Full=Pseudouridyla...   207   6e-52
tr|C0WIL8|C0WIL8_9CORY Tax_Id=525260 (truA)RecName: Full=Pseudou...   204   6e-51
sp|Q2JFE6|TRUA_FRASC Tax_Id=106370 (truA)RecName: Full=tRNA pseu...   201   6e-50
sp|Q8NSV0|TRUA_CORGL Tax_Id=1718 (truA)RecName: Full=tRNA pseudo...   200   1e-49
tr|C3PL40|C3PL40_CORA7 Tax_Id=548476 (truA)RecName: Full=Pseudou...   200   1e-49

>tr|B8ZSH4|B8ZSH4_MYCLB Tax_Id=561304 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Mycobacterium leprae]
          Length = 249

 Score =  462 bits (1188), Expect = e-128
 Identities = 229/249 (91%), Positives = 230/249 (92%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           +LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEF   
Sbjct: 1   MLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFLPL 60

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           IACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE
Sbjct: 61  LRRLSRLLPVDVRVLDIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSM 180
           LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSM
Sbjct: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSM 180

Query: 181 VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAV 240
           VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAV
Sbjct: 181 VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAV 240

Query: 241 ITRDLRSSF 249
           ITRDLRSSF
Sbjct: 241 ITRDLRSSF 249


>sp|Q9X796|TRUA_MYCLE Tax_Id=1769 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Mycobacterium leprae]
          Length = 286

 Score =  461 bits (1187), Expect = e-128
 Identities = 229/248 (92%), Positives = 229/248 (92%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEF    
Sbjct: 39  LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFLPLL 98

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                          IACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL
Sbjct: 99  RRLSRLLPVDVRVLDIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 158

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 181
           DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV
Sbjct: 159 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 218

Query: 182 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 241
           RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI
Sbjct: 219 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 278

Query: 242 TRDLRSSF 249
           TRDLRSSF
Sbjct: 279 TRDLRSSF 286


>sp|P65846|TRUA_MYCTU Tax_Id=1773 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Mycobacterium tuberculosis]
          Length = 297

 Score =  364 bits (935), Expect = 4e-99
 Identities = 175/246 (71%), Positives = 195/246 (79%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           LD A TT+FRTPVRLRAAGRTD GVHA+GQVAHVD+P  AL  A PR+ H GDPEF    
Sbjct: 51  LDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLL 110

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                          I  AP GFDARFSALRRHY YRLSTAPYGV+P QARY+TAWPREL
Sbjct: 111 RRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPREL 170

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 181
           DLD+M+AASRDL+GL DFA FCRHR GATTIR+LQRL+WSR G L+TAH+TADAFCWSMV
Sbjct: 171 DLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMV 230

Query: 182 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 241
           RSL+GALLAVG+HRR   WC ELLT   RSSDF  APAHGLT I+VDYPPDD+LA R ++
Sbjct: 231 RSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLV 290

Query: 242 TRDLRS 247
           TRD+RS
Sbjct: 291 TRDVRS 296


>sp|P65847|TRUA_MYCBO Tax_Id=1765 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Mycobacterium bovis]
          Length = 297

 Score =  364 bits (935), Expect = 4e-99
 Identities = 175/246 (71%), Positives = 195/246 (79%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           LD A TT+FRTPVRLRAAGRTD GVHA+GQVAHVD+P  AL  A PR+ H GDPEF    
Sbjct: 51  LDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLL 110

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                          I  AP GFDARFSALRRHY YRLSTAPYGV+P QARY+TAWPREL
Sbjct: 111 RRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPREL 170

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 181
           DLD+M+AASRDL+GL DFA FCRHR GATTIR+LQRL+WSR G L+TAH+TADAFCWSMV
Sbjct: 171 DLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMV 230

Query: 182 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 241
           RSL+GALLAVG+HRR   WC ELLT   RSSDF  APAHGLT I+VDYPPDD+LA R ++
Sbjct: 231 RSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLV 290

Query: 242 TRDLRS 247
           TRD+RS
Sbjct: 291 TRDVRS 296


>tr|C6DLX6|C6DLX6_MYCTK Tax_Id=478434 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium tuberculosis]
          Length = 297

 Score =  364 bits (935), Expect = 4e-99
 Identities = 175/246 (71%), Positives = 195/246 (79%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           LD A TT+FRTPVRLRAAGRTD GVHA+GQVAHVD+P  AL  A PR+ H GDPEF    
Sbjct: 51  LDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLL 110

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                          I  AP GFDARFSALRRHY YRLSTAPYGV+P QARY+TAWPREL
Sbjct: 111 RRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPREL 170

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 181
           DLD+M+AASRDL+GL DFA FCRHR GATTIR+LQRL+WSR G L+TAH+TADAFCWSMV
Sbjct: 171 DLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMV 230

Query: 182 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 241
           RSL+GALLAVG+HRR   WC ELLT   RSSDF  APAHGLT I+VDYPPDD+LA R ++
Sbjct: 231 RSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLV 290

Query: 242 TRDLRS 247
           TRD+RS
Sbjct: 291 TRDVRS 296


>tr|C1AHR3|C1AHR3_MYCBT Tax_Id=561275 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Mycobacterium bovis]
          Length = 256

 Score =  364 bits (935), Expect = 4e-99
 Identities = 175/246 (71%), Positives = 195/246 (79%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           LD A TT+FRTPVRLRAAGRTD GVHA+GQVAHVD+P  AL  A PR+ H GDPEF    
Sbjct: 10  LDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLL 69

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                          I  AP GFDARFSALRRHY YRLSTAPYGV+P QARY+TAWPREL
Sbjct: 70  RRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPREL 129

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 181
           DLD+M+AASRDL+GL DFA FCRHR GATTIR+LQRL+WSR G L+TAH+TADAFCWSMV
Sbjct: 130 DLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMV 189

Query: 182 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 241
           RSL+GALLAVG+HRR   WC ELLT   RSSDF  APAHGLT I+VDYPPDD+LA R ++
Sbjct: 190 RSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLV 249

Query: 242 TRDLRS 247
           TRD+RS
Sbjct: 250 TRDVRS 255


>tr|A5U8D1|A5U8D1_MYCTA Tax_Id=419947 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Mycobacterium tuberculosis]
          Length = 256

 Score =  364 bits (935), Expect = 4e-99
 Identities = 175/246 (71%), Positives = 195/246 (79%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           LD A TT+FRTPVRLRAAGRTD GVHA+GQVAHVD+P  AL  A PR+ H GDPEF    
Sbjct: 10  LDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLL 69

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                          I  AP GFDARFSALRRHY YRLSTAPYGV+P QARY+TAWPREL
Sbjct: 70  RRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPREL 129

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 181
           DLD+M+AASRDL+GL DFA FCRHR GATTIR+LQRL+WSR G L+TAH+TADAFCWSMV
Sbjct: 130 DLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMV 189

Query: 182 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 241
           RSL+GALLAVG+HRR   WC ELLT   RSSDF  APAHGLT I+VDYPPDD+LA R ++
Sbjct: 190 RSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLV 249

Query: 242 TRDLRS 247
           TRD+RS
Sbjct: 250 TRDVRS 255


>tr|A1KPE1|A1KPE1_MYCBP Tax_Id=410289 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Mycobacterium bovis]
          Length = 256

 Score =  364 bits (935), Expect = 4e-99
 Identities = 175/246 (71%), Positives = 195/246 (79%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           LD A TT+FRTPVRLRAAGRTD GVHA+GQVAHVD+P  AL  A PR+ H GDPEF    
Sbjct: 10  LDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLL 69

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                          I  AP GFDARFSALRRHY YRLSTAPYGV+P QARY+TAWPREL
Sbjct: 70  RRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPREL 129

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 181
           DLD+M+AASRDL+GL DFA FCRHR GATTIR+LQRL+WSR G L+TAH+TADAFCWSMV
Sbjct: 130 DLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMV 189

Query: 182 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 241
           RSL+GALLAVG+HRR   WC ELLT   RSSDF  APAHGLT I+VDYPPDD+LA R ++
Sbjct: 190 RSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLV 249

Query: 242 TRDLRS 247
           TRD+RS
Sbjct: 250 TRDVRS 255


>tr|A5WT28|A5WT28_MYCTF Tax_Id=336982 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium tuberculosis]
          Length = 297

 Score =  364 bits (935), Expect = 4e-99
 Identities = 175/246 (71%), Positives = 195/246 (79%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           LD A TT+FRTPVRLRAAGRTD GVHA+GQVAHVD+P  AL  A PR+ H GDPEF    
Sbjct: 51  LDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLL 110

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                          I  AP GFDARFSALRRHY YRLSTAPYGV+P QARY+TAWPREL
Sbjct: 111 RRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPREL 170

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 181
           DLD+M+AASRDL+GL DFA FCRHR GATTIR+LQRL+WSR G L+TAH+TADAFCWSMV
Sbjct: 171 DLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMV 230

Query: 182 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 241
           RSL+GALLAVG+HRR   WC ELLT   RSSDF  APAHGLT I+VDYPPDD+LA R ++
Sbjct: 231 RSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLV 290

Query: 242 TRDLRS 247
           TRD+RS
Sbjct: 291 TRDVRS 296


>tr|A4KLX9|A4KLX9_MYCTU Tax_Id=395095 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium tuberculosis str.
           Haarlem]
          Length = 297

 Score =  364 bits (935), Expect = 4e-99
 Identities = 175/246 (71%), Positives = 195/246 (79%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           LD A TT+FRTPVRLRAAGRTD GVHA+GQVAHVD+P  AL  A PR+ H GDPEF    
Sbjct: 51  LDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLL 110

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                          I  AP GFDARFSALRRHY YRLSTAPYGV+P QARY+TAWPREL
Sbjct: 111 RRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPREL 170

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 181
           DLD+M+AASRDL+GL DFA FCRHR GATTIR+LQRL+WSR G L+TAH+TADAFCWSMV
Sbjct: 171 DLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMV 230

Query: 182 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 241
           RSL+GALLAVG+HRR   WC ELLT   RSSDF  APAHGLT I+VDYPPDD+LA R ++
Sbjct: 231 RSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLV 290

Query: 242 TRDLRS 247
           TRD+RS
Sbjct: 291 TRDVRS 296


>tr|A2VPN3|A2VPN3_MYCTU Tax_Id=348776 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium tuberculosis C]
          Length = 297

 Score =  364 bits (935), Expect = 4e-99
 Identities = 175/246 (71%), Positives = 195/246 (79%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           LD A TT+FRTPVRLRAAGRTD GVHA+GQVAHVD+P  AL  A PR+ H GDPEF    
Sbjct: 51  LDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLL 110

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                          I  AP GFDARFSALRRHY YRLSTAPYGV+P QARY+TAWPREL
Sbjct: 111 RRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPREL 170

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 181
           DLD+M+AASRDL+GL DFA FCRHR GATTIR+LQRL+WSR G L+TAH+TADAFCWSMV
Sbjct: 171 DLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMV 230

Query: 182 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 241
           RSL+GALLAVG+HRR   WC ELLT   RSSDF  APAHGLT I+VDYPPDD+LA R ++
Sbjct: 231 RSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLV 290

Query: 242 TRDLRS 247
           TRD+RS
Sbjct: 291 TRDVRS 296


>sp|Q73S41|TRUA_MYCPA Tax_Id=1770 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Mycobacterium
           paratuberculosis]
          Length = 251

 Score =  355 bits (912), Expect = 2e-96
 Identities = 172/247 (69%), Positives = 198/247 (80%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VLDEA TTVFRTPVRLRAAGRTD GVHATGQVAH+D+PGTAL  A PR+PH G+ EF   
Sbjct: 4   VLDEALTTVFRTPVRLRAAGRTDAGVHATGQVAHLDVPGTALPNAYPRAPHVGEAEFGPL 63

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           I  AP GFDARFSALRRHY YRLSTAP+GV P QARYVTAWPR 
Sbjct: 64  LRRLGRFLPTDVRVVDITRAPAGFDARFSALRRHYVYRLSTAPWGVLPQQARYVTAWPRP 123

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSM 180
           LD+++M+AASRDLLGL DFA FCRHR  ATTIR+LQRL+W+R+G LITA ++ADAFCWSM
Sbjct: 124 LDVEAMAAASRDLLGLHDFAAFCRHRENATTIRDLQRLDWTRDGDLITARVSADAFCWSM 183

Query: 181 VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAV 240
           VRSL+GALLAVG++RR + WC ELL+  +RSSD+ TAPAHGLT + VDYPPDD+LA R +
Sbjct: 184 VRSLVGALLAVGENRRPVSWCRELLSATNRSSDYATAPAHGLTLVGVDYPPDDQLAARNL 243

Query: 241 ITRDLRS 247
           ITRD+RS
Sbjct: 244 ITRDVRS 250


>tr|A0QKU3|A0QKU3_MYCA1 Tax_Id=243243 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Mycobacterium avium]
          Length = 251

 Score =  353 bits (906), Expect = 1e-95
 Identities = 171/247 (69%), Positives = 197/247 (79%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VLDEA TTVFRTPVRLRAAGRTD GVHATGQVAH+D+PGTAL  A PR+PH G+ EF   
Sbjct: 4   VLDEALTTVFRTPVRLRAAGRTDAGVHATGQVAHLDVPGTALPNAYPRAPHVGEAEFGPL 63

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           I  AP GFDARFSALRRHY YRLSTAP+GV P QARYVTAWPR 
Sbjct: 64  LRRLGRFLPTDVRVVDITRAPAGFDARFSALRRHYVYRLSTAPWGVLPQQARYVTAWPRP 123

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSM 180
           LD+++M+AASRDLLGL DFA FCRHR  ATTIR+LQRL+W+R+G LI A ++ADAFCWSM
Sbjct: 124 LDVEAMAAASRDLLGLHDFAAFCRHRENATTIRDLQRLDWTRDGDLIIARVSADAFCWSM 183

Query: 181 VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAV 240
           VRSL+GALLAVG++RR + WC ELL+  +RSSD+ TAPAHGLT + VDYPPDD+LA R +
Sbjct: 184 VRSLVGALLAVGENRRPVSWCRELLSATNRSSDYATAPAHGLTLVGVDYPPDDQLAARNL 243

Query: 241 ITRDLRS 247
           ITRD+RS
Sbjct: 244 ITRDVRS 250


>tr|A0PMB9|A0PMB9_MYCUA Tax_Id=362242 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Mycobacterium ulcerans]
          Length = 260

 Score =  347 bits (890), Expect = 7e-94
 Identities = 170/247 (68%), Positives = 190/247 (76%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VLDEA TTV RTPVRLRAAGRTD GVHATGQVAH D+P  AL  A  RS   GDPEF   
Sbjct: 11  VLDEALTTVLRTPVRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPL 70

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           IA AP  FDARFSALRRHY YRLSTAPYGV+P QARYVT WPRE
Sbjct: 71  VRRLARFLPADLRVLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRE 130

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSM 180
           LD+D+M+ AS++LLGL +FA FCR R GATTIR+LQRL+WSR G+L+TA ++ADAFCWSM
Sbjct: 131 LDIDAMTVASQELLGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSM 190

Query: 181 VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAV 240
           VRSL+GALLAVG+HRRT  WC ELLT  +RSSDF  APAHGL   +VDYPPDD+LA R +
Sbjct: 191 VRSLVGALLAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVL 250

Query: 241 ITRDLRS 247
           ITRDLRS
Sbjct: 251 ITRDLRS 257


>tr|B2HCX6|B2HCX6_MYCMM Tax_Id=216594 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Mycobacterium marinum]
          Length = 237

 Score =  327 bits (837), Expect = 1e-87
 Identities = 159/234 (67%), Positives = 179/234 (76%)

Query: 14  VRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXXXXXXXXXXXXXX 73
           +RLRAAGRTD GVHATGQVAH D+P  AL  A  RS   GDPEF                
Sbjct: 1   MRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60

Query: 74  XXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRELDLDSMSAASRDL 133
              IA AP  FDARFSALRRHY YRLSTAPYGV+P QARYVT WPRELD+D+M+ ASR+L
Sbjct: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120

Query: 134 LGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMVRSLIGALLAVGD 193
           LGL +FA FCR R GATTIR+LQRL+WSR G+L+TA ++ADAFCWSMVRSL+GALLAVG+
Sbjct: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180

Query: 194 HRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVITRDLRS 247
           HRRT  WC ELLT  +RSSDF  APAHGL   +VDYPPDD+LA R +ITRDLRS
Sbjct: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234


>tr|Q1BD06|Q1BD06_MYCSS Tax_Id=164756 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium sp.]
          Length = 299

 Score =  324 bits (830), Expect = 6e-87
 Identities = 156/246 (63%), Positives = 183/246 (74%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           ++DEA TTVFRTPV +RAAGRTD GVHATGQVAHVD+P  AL  A PRS    +PEF   
Sbjct: 51  LIDEALTTVFRTPVTVRAAGRTDAGVHATGQVAHVDVPDDALPHAYPRSARPDEPEFLPL 110

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           I  AP GFDARFSALRRHY YRL TAPYGV+P  AR+VT WPR 
Sbjct: 111 VRRLGRFLPADVRIRDIIRAPTGFDARFSALRRHYTYRLGTAPYGVEPQSARFVTPWPRP 170

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSM 180
           LD+++M+ A   L+GLRDFA FCRHR GATTIR+LQRLEW+R+G L+TA+++ADAFCWSM
Sbjct: 171 LDVEAMNDAGSQLVGLRDFAAFCRHREGATTIRDLQRLEWTRDGDLVTAYVSADAFCWSM 230

Query: 181 VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAV 240
           VRSL+GAL+AVG+HRR   WC  LL+   RSS+F  AP  GLT + VDYPPDDELA R +
Sbjct: 231 VRSLVGALIAVGEHRREPEWCAGLLSATRRSSEFAAAPPQGLTLVGVDYPPDDELAARTL 290

Query: 241 ITRDLR 246
           +TRDLR
Sbjct: 291 VTRDLR 296


>tr|A3PVM0|A3PVM0_MYCSJ Tax_Id=164757 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium sp.]
          Length = 299

 Score =  324 bits (830), Expect = 6e-87
 Identities = 156/246 (63%), Positives = 183/246 (74%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           ++DEA TTVFRTPV +RAAGRTD GVHATGQVAHVD+P  AL  A PRS    +PEF   
Sbjct: 51  LIDEALTTVFRTPVTVRAAGRTDAGVHATGQVAHVDVPDDALPHAYPRSARPDEPEFLPL 110

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           I  AP GFDARFSALRRHY YRL TAPYGV+P  AR+VT WPR 
Sbjct: 111 VRRLGRFLPADVRIRDIIRAPTGFDARFSALRRHYTYRLGTAPYGVEPQSARFVTPWPRP 170

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSM 180
           LD+++M+ A   L+GLRDFA FCRHR GATTIR+LQRLEW+R+G L+TA+++ADAFCWSM
Sbjct: 171 LDVEAMNDAGSQLVGLRDFAAFCRHREGATTIRDLQRLEWTRDGDLVTAYVSADAFCWSM 230

Query: 181 VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAV 240
           VRSL+GAL+AVG+HRR   WC  LL+   RSS+F  AP  GLT + VDYPPDDELA R +
Sbjct: 231 VRSLVGALIAVGEHRREPEWCAGLLSATRRSSEFAAAPPQGLTLVGVDYPPDDELAARTL 290

Query: 241 ITRDLR 246
           +TRDLR
Sbjct: 291 VTRDLR 296


>tr|A1UBY7|A1UBY7_MYCSK Tax_Id=189918 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium sp.]
          Length = 299

 Score =  324 bits (830), Expect = 6e-87
 Identities = 156/246 (63%), Positives = 183/246 (74%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           ++DEA TTVFRTPV +RAAGRTD GVHATGQVAHVD+P  AL  A PRS    +PEF   
Sbjct: 51  LIDEALTTVFRTPVTVRAAGRTDAGVHATGQVAHVDVPDDALPHAYPRSARPDEPEFLPL 110

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           I  AP GFDARFSALRRHY YRL TAPYGV+P  AR+VT WPR 
Sbjct: 111 VRRLGRFLPADVRIRDIIRAPTGFDARFSALRRHYTYRLGTAPYGVEPQSARFVTPWPRP 170

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSM 180
           LD+++M+ A   L+GLRDFA FCRHR GATTIR+LQRLEW+R+G L+TA+++ADAFCWSM
Sbjct: 171 LDVEAMNDAGSQLVGLRDFAAFCRHREGATTIRDLQRLEWTRDGDLVTAYVSADAFCWSM 230

Query: 181 VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAV 240
           VRSL+GAL+AVG+HRR   WC  LL+   RSS+F  AP  GLT + VDYPPDDELA R +
Sbjct: 231 VRSLVGALIAVGEHRREPEWCAGLLSATRRSSEFAAAPPQGLTLVGVDYPPDDELAARTL 290

Query: 241 ITRDLR 246
           +TRDLR
Sbjct: 291 VTRDLR 296


>tr|A4TEJ1|A4TEJ1_MYCGI Tax_Id=350054 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium gilvum]
          Length = 298

 Score =  313 bits (802), Expect = 1e-83
 Identities = 154/248 (62%), Positives = 186/248 (75%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           V+D+A +TVFRTPV  RAAGRTD+GVHATGQVAH DIP  AL  A PR+   G+PEF   
Sbjct: 48  VIDDALSTVFRTPVLTRAAGRTDSGVHATGQVAHADIPTDALPHAYPRTVRAGEPEFGPL 107

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           I  A  GFDARFSALRRHY YRL+TAPYGV+P +AR+VTAWPR 
Sbjct: 108 VRRLGRMLTEDVRVRGIVRAAPGFDARFSALRRHYVYRLTTAPYGVEPAEARFVTAWPRP 167

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSM 180
           LD+D+M+ A++++LGL DFA FCRHR GATTIRELQRL+  R+G  I+ H++ADAFCW+M
Sbjct: 168 LDVDAMAGAAQNVLGLHDFAAFCRHRDGATTIRELQRLDCVRDGDRISVHVSADAFCWNM 227

Query: 181 VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAV 240
           VRSL+GALLAVG+HRR   WC +LL    RSSDF  APA GLT + VDYPPDDELA R +
Sbjct: 228 VRSLVGALLAVGEHRRDDTWCVQLLHARHRSSDFAAAPARGLTLVGVDYPPDDELAARNL 287

Query: 241 ITRDLRSS 248
           +TRD+R++
Sbjct: 288 VTRDVRTA 295


>tr|A0QSM0|A0QSM0_MYCS2 Tax_Id=246196 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Mycobacterium smegmatis]
          Length = 291

 Score =  307 bits (787), Expect = 6e-82
 Identities = 153/247 (61%), Positives = 179/247 (72%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           V+DEA TTVFRTPV  R AGRTDTGVHATGQVAHVD+P  AL  A PR     D EF   
Sbjct: 39  VIDEALTTVFRTPVVTRVAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPL 98

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           I  AP GFDARFSALRRHY YRL+TAPYG +P++ R+VT W R 
Sbjct: 99  VRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRP 158

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSM 180
           LD+D+M+AA+++LLGL DFA FCR+R GATTIR+LQRLEW R G+ I A++TADAFCW+M
Sbjct: 159 LDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNM 218

Query: 181 VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAV 240
           VRSL+GALL VG+ RR+  W  ELL   SRSS+F  APA GLT   VDYPPDDEL  R V
Sbjct: 219 VRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNV 278

Query: 241 ITRDLRS 247
           +TRD+R+
Sbjct: 279 VTRDVRT 285


>tr|A1T522|A1T522_MYCVP Tax_Id=350058 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium vanbaalenii]
          Length = 299

 Score =  306 bits (784), Expect = 1e-81
 Identities = 150/247 (60%), Positives = 180/247 (72%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           +D+A +TVFRTPV  RAAGRTD+GVHATGQVAHVD+P  AL  A PR+   G+ EF    
Sbjct: 50  IDDALSTVFRTPVVTRAAGRTDSGVHATGQVAHVDVPADALPYAYPRTTRPGEAEFGPLV 109

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                          I  A  GFDARFSALRRHY YRLSTAPYGV+P +AR+VT WPR L
Sbjct: 110 RRLGRMLPEDVRVREITRAAPGFDARFSALRRHYLYRLSTAPYGVEPAEARFVTPWPRPL 169

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 181
           D+ +M+AA+R+L+GL DFA FCRHR GATTIRELQRL+  R+G  +  H++ADAFCW+MV
Sbjct: 170 DVAAMAAAARELVGLHDFAAFCRHRDGATTIRELQRLDCVRDGDRVEVHVSADAFCWNMV 229

Query: 182 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 241
           RSL+GALLAVG+HRR   WC  LL    RSSDF  APA GLT + VDYPPD +L  R ++
Sbjct: 230 RSLVGALLAVGEHRRDAAWCAALLDATGRSSDFAAAPARGLTLVGVDYPPDAQLEARNLV 289

Query: 242 TRDLRSS 248
           TRDLR++
Sbjct: 290 TRDLRTA 296


>tr|B1MG97|B1MG97_MYCA9 Tax_Id=561007 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium abscessus]
          Length = 294

 Score =  285 bits (730), Expect = 2e-75
 Identities = 144/246 (58%), Positives = 170/246 (69%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VL EAFTT+    V+L AAGRTD GVHATGQVAH+D+P   L     R    G PEF   
Sbjct: 44  VLGEAFTTIVGDSVQLYAAGRTDAGVHATGQVAHLDVPVACLPGLRGRYRPAGAPEFDRL 103

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           I+ AP  FDARFSALRRHY YRLSTA +GV P     V  W R 
Sbjct: 104 VRRLSRFLPSDVRVLDISRAPAHFDARFSALRRHYEYRLSTASFGVLPLARHDVVGWHRP 163

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSM 180
           LD+D+M+ ASR+LLGLRDFA FCRHR GATTIRELQR +W  +G  +TA+++ADAFCWSM
Sbjct: 164 LDVDAMNEASRNLLGLRDFAAFCRHREGATTIRELQRFDWGVDGQRLTAYVSADAFCWSM 223

Query: 181 VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAV 240
           VRSL+GA+LAVG+ RR + WC +LL K  RSSDF  APA GLT + VDYPPDD++A R +
Sbjct: 224 VRSLVGAVLAVGEGRRPVQWCVDLLNKERRSSDFAAAPARGLTLVGVDYPPDDQMAARVM 283

Query: 241 ITRDLR 246
           ITRD+R
Sbjct: 284 ITRDVR 289


>tr|Q0S3E5|Q0S3E5_RHOSR Tax_Id=101510 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Rhodococcus sp.]
          Length = 297

 Score =  249 bits (637), Expect = 1e-64
 Identities = 130/247 (52%), Positives = 163/247 (65%), Gaps = 11/247 (4%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           ++E    V RTP++L  AGRTD GVHATGQVAHVD+P  AL           DP      
Sbjct: 55  IEEKLGAVLRTPLQLTVAGRTDAGVHATGQVAHVDVPVDALPD---------DPS--RLV 103

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                          IA AP  FDARFSA+RRHY YRL++A YG  P +AR   ++P+ L
Sbjct: 104 RRLARFLPKDVRIKRIAFAPEHFDARFSAMRRHYEYRLTSAVYGADPLRARDTVSYPKVL 163

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 181
           DL+ M +AS  LLGL DFA FC+ R GATT+R+LQR +W R+G + TA ++ADAFCWSMV
Sbjct: 164 DLELMRSASATLLGLHDFAAFCKRREGATTVRDLQRFDWERDGDVFTAFVSADAFCWSMV 223

Query: 182 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 241
           RSL+GA+LAVG+ RR +GW   LL + SRSS    APAHGL+ +RVDYP D +LA R  I
Sbjct: 224 RSLVGAVLAVGEGRRDLGWIEGLLQEKSRSSSILVAPAHGLSLVRVDYPDDADLAARNKI 283

Query: 242 TRDLRSS 248
           TRD+R++
Sbjct: 284 TRDVRTA 290


>tr|D0L2F0|D0L2F0_9ACTO Tax_Id=526226 SubName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12;[Gordonia
           bronchialis DSM 43247]
          Length = 291

 Score =  244 bits (623), Expect = 6e-63
 Identities = 131/247 (53%), Positives = 155/247 (62%), Gaps = 7/247 (2%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VL++   TV R PVRL  AGRTD GVHATGQV H DIP +AL   +      GDP     
Sbjct: 43  VLEDTLATVLRIPVRLTVAGRTDAGVHATGQVCHTDIPVSALQTRSIG----GDPSLLVG 98

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           IA     FDARFSALRRHY YRL+ A +G +P  AR    W R 
Sbjct: 99  RLAKMLPDDVRVKE--IASVSGDFDARFSALRRHYEYRLTDARWGAEPIHARTTATWRRP 156

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSRE-GYLITAHITADAFCWS 179
           LD+D+M+AAS  LLGL DFA FCR R GATTIR+LQ+  W+R  G ++   ++ADAFCWS
Sbjct: 157 LDVDAMNAASASLLGLNDFAAFCRRREGATTIRDLQQFSWTRHAGGVLVGQVSADAFCWS 216

Query: 180 MVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERA 239
           MVRSL+GA+ +VGD RR I WC  LL +  RSS    A A GL  +RVDYP DDELAER 
Sbjct: 217 MVRSLVGAVASVGDGRRDIDWCRGLLAETQRSSQVPVADACGLCLVRVDYPADDELAERN 276

Query: 240 VITRDLR 246
            +TRD+R
Sbjct: 277 TVTRDVR 283


>tr|C6WLZ4|C6WLZ4_ACTMD Tax_Id=446462 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Actinosynnema mirum]
          Length = 314

 Score =  242 bits (617), Expect = 3e-62
 Identities = 128/246 (52%), Positives = 159/246 (64%), Gaps = 14/246 (5%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VL++  +TV R  V L  AGRTD GVHA GQVAHVD+P  A     P+      P     
Sbjct: 65  VLEDTMSTVLREDVVLTVAGRTDAGVHAAGQVAHVDLPEAADVAGLPKRLARALPA---- 120

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                               P  FDARF+ALRRHY YR++ AP+G  P +     AWPR+
Sbjct: 121 ----------DVRVFSARVVPAAFDARFAALRRHYEYRVTDAPFGAHPLRRLDTLAWPRQ 170

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSM 180
           LD+ +M+AAS  +LG RDF  +CR R GATTIRELQRLEW REG L+TA ++ADAFC SM
Sbjct: 171 LDVAAMNAASGLMLGERDFCAYCRRREGATTIRELQRLEWVREGDLLTAFVSADAFCHSM 230

Query: 181 VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAV 240
           VRSL+GALLAVG+ R+ + W   LL+  SRSS+ T AP HGL+ +RVDYP D++LA RA 
Sbjct: 231 VRSLVGALLAVGEGRKPVEWPASLLSLHSRSSEVTVAPPHGLSLVRVDYPADEDLAARAE 290

Query: 241 ITRDLR 246
           ITR++R
Sbjct: 291 ITRNIR 296


>sp|Q5Z1K7|TRUA_NOCFA Tax_Id=37329 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Nocardia farcinica]
          Length = 257

 Score =  240 bits (612), Expect = 1e-61
 Identities = 129/248 (52%), Positives = 156/248 (62%), Gaps = 14/248 (5%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VL++A   V R P++L  AGRTD GVHA GQVAH D   TA     P+  H         
Sbjct: 15  VLEDALGKVLREPIQLTVAGRTDAGVHAEGQVAHFD---TAAEFDGPQLVHR-------- 63

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                               P  FDARFSA+RRHY YRL+TAPYG +P  AR V      
Sbjct: 64  ---LARFLPKDVRVKRADVVPPDFDARFSAIRRHYVYRLTTAPYGAEPLAARSVVPCKSA 120

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSM 180
           +D+D+M  AS  LLGL DFA FCR R GATT+RELQR +W R+G L+ AH++ADAFCWSM
Sbjct: 121 VDVDAMRRASGLLLGLHDFAAFCRRREGATTVRELQRFDWERQGDLLLAHVSADAFCWSM 180

Query: 181 VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAV 240
           VRSL+GA+LAVG+ RR+  W   LL +  RSS  T APAHGL+ + VDYP DDELA R V
Sbjct: 181 VRSLVGAVLAVGEGRRSPEWVAGLLRETQRSSSVTVAPAHGLSLVAVDYPADDELAARNV 240

Query: 241 ITRDLRSS 248
            TR++RS+
Sbjct: 241 QTREMRSA 248


>tr|C1B043|C1B043_RHOOB Tax_Id=632772 (truA)RecName:
           Full=Pseudouridylate synthase; EC=5.4.99.-;[Rhodococcus
           opacus]
          Length = 270

 Score =  239 bits (611), Expect = 2e-61
 Identities = 125/246 (50%), Positives = 158/246 (64%), Gaps = 11/246 (4%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           ++E    V R+P++L  AGRTD GVHATGQVAHVD+P  AL     R             
Sbjct: 28  IEEKLGAVLRSPLQLTVAGRTDAGVHATGQVAHVDVPVEALPDEPSR-----------LV 76

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                          I+ AP  FDARFSA+RRHY YRL++A YG  P +AR   ++P+ L
Sbjct: 77  RRLARFLPKDVRIKQISFAPEHFDARFSAMRRHYEYRLTSAVYGADPLRARDTVSYPKIL 136

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 181
           DL+ M +AS  LLGL DFA FC+ R GATT+R+LQR +W R+G + TA ++ADAFCWSMV
Sbjct: 137 DLELMRSASATLLGLHDFAAFCKRREGATTVRDLQRFDWERDGDVFTAFVSADAFCWSMV 196

Query: 182 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 241
           RSL+GA+LAVG+ RR + W   LL + SRSS    APAHGL  +RVDYP   +LA R  I
Sbjct: 197 RSLVGAVLAVGEGRRDLDWIEGLLRETSRSSSILVAPAHGLCLVRVDYPEAADLAARNRI 256

Query: 242 TRDLRS 247
           TRD+R+
Sbjct: 257 TRDVRT 262


>tr|C0ZW56|C0ZW56_RHOE4 Tax_Id=234621 (truA)RecName:
           Full=Pseudouridylate synthase; EC=5.4.99.-;[Rhodococcus
           erythropolis]
          Length = 294

 Score =  238 bits (607), Expect = 4e-61
 Identities = 123/245 (50%), Positives = 157/245 (64%), Gaps = 11/245 (4%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           +++   TV R PV+L  AGRTD GVHATGQVAHVD+PG  L           DP      
Sbjct: 50  IEDKLGTVLRQPVQLTVAGRTDAGVHATGQVAHVDVPGELLPD---------DPS--RLV 98

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                          I+  P  FDARFSA+RR+Y YR++ A +GV+P +AR   ++P+ L
Sbjct: 99  RRLARFLPKDVRVKQISVVPGDFDARFSAIRRYYEYRVTNAAFGVEPLRARDTVSYPKPL 158

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 181
           DL +M  AS  LLGL +FA FC+ R GATT+RELQR +W++EG + TA++ ADAFCWSMV
Sbjct: 159 DLAAMQEASNRLLGLHNFAAFCKRREGATTVRELQRFDWAQEGTVFTAYVNADAFCWSMV 218

Query: 182 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 241
           RSL+GA+L+VG+ RRT  W   LL +  RSS    APAHGL+ +RVDYP   ELA R  I
Sbjct: 219 RSLVGAVLSVGEGRRTADWVAGLLDETLRSSSILVAPAHGLSLVRVDYPDYSELAARNAI 278

Query: 242 TRDLR 246
           TR+ R
Sbjct: 279 TRETR 283


>tr|C3JGZ4|C3JGZ4_RHOER Tax_Id=596309 (truA)RecName:
           Full=Pseudouridylate synthase; EC=5.4.99.-;[Rhodococcus
           erythropolis SK121]
          Length = 294

 Score =  238 bits (607), Expect = 4e-61
 Identities = 123/245 (50%), Positives = 157/245 (64%), Gaps = 11/245 (4%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           +++   TV R PV+L  AGRTD GVHATGQVAHVD+PG  L           DP      
Sbjct: 50  IEDKLGTVLRRPVQLTVAGRTDAGVHATGQVAHVDVPGELLPD---------DPS--RLV 98

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                          I+  P  FDARFSA+RR+Y YR++ A +GV+P +AR   ++P+ L
Sbjct: 99  RRLARFLPKDVRVKQISVVPGDFDARFSAMRRYYEYRVTNAAFGVEPLRARDTVSYPKPL 158

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 181
           DL +M  AS  LLGL +FA FC+ R GATT+RELQR +W++ G + TA++ ADAFCWSMV
Sbjct: 159 DLGAMQEASNRLLGLHNFAAFCKRREGATTVRELQRFDWTQVGTVFTAYVNADAFCWSMV 218

Query: 182 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 241
           RSL+GA+L+VG+ RRT  W   LL + SRSS    APAHGL+ +RVDYP   ELA R  I
Sbjct: 219 RSLVGAVLSVGEGRRTADWVAGLLDETSRSSSILVAPAHGLSLVRVDYPDYSELAARNAI 278

Query: 242 TRDLR 246
           TR+ R
Sbjct: 279 TRETR 283


>tr|C2AM23|C2AM23_TSUPA Tax_Id=521096 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Tsukamurella paurometabola DSM
           20162]
          Length = 301

 Score =  238 bits (607), Expect = 4e-61
 Identities = 134/247 (54%), Positives = 157/247 (63%), Gaps = 16/247 (6%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           V++EA  TV RTPV+L  AGRTD GVHATGQVAHVD    AL +   R      P+    
Sbjct: 58  VVEEAIGTVLRTPVQLTVAGRTDAGVHATGQVAHVDTD-LALPEGLVRRLARMLPQ---- 112

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           IA AP  FDARFSALRRHY YRL+ APYG  P +AR    W R 
Sbjct: 113 ----------DVRVTAIAEAPAEFDARFSALRRHYEYRLTDAPYGANPLRARDTAPWRRP 162

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREG-YLITAHITADAFCWS 179
           +D++ M AAS  LLGL DFA FCR R GATT+RELQR  W R+   + TA ++ADAFCWS
Sbjct: 163 VDVERMQAASDALLGLHDFAAFCRRREGATTVRELQRFAWRRDADGVCTAEVSADAFCWS 222

Query: 180 MVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERA 239
           MVRSL+GA+ AVG+ RR++ W   LL +  RSS    A A GLT +RVDYP DDELAER 
Sbjct: 223 MVRSLVGAVAAVGEGRRSVEWVAGLLDERERSSAINVAAACGLTLVRVDYPADDELAERN 282

Query: 240 VITRDLR 246
            ITR+ R
Sbjct: 283 RITREKR 289


>tr|A4FPJ0|A4FPJ0_SACEN Tax_Id=405948 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Saccharopolyspora erythraea]
          Length = 296

 Score =  233 bits (593), Expect = 2e-59
 Identities = 126/238 (52%), Positives = 155/238 (65%), Gaps = 6/238 (2%)

Query: 13  PVRLRAAGRTDTGVHATGQVAHVDIPGTALSKAN--PRSPHTGDPEFXXXXXXXXXXXXX 70
           P  +  AGRTDTGVHATGQV HVD+  +A  +    P   H G P+              
Sbjct: 57  PRSVVVAGRTDTGVHATGQVVHVDVVPSAPDEGGRLPLDEH-GIPDLDRMRHRWNRILPG 115

Query: 71  XXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRELDLDSMSAAS 130
                    AP GFDARFSA+RRHYRY++S AP+GV P + R   +W R LD+D+++AAS
Sbjct: 116 DVRVLGARVAPAGFDARFSAMRRHYRYQVSDAPWGVDPLRRRDTLSWNRPLDVDALNAAS 175

Query: 131 RDLLGLRDFAVFCRHRHGATTIRELQRLEWSR-EGYLITAHITADAFCWSMVRSLIGALL 189
            DLLGL DFA FC+ R GATT+RELQR  W R E +L+ A ++ADAFC SMVRSL+GALL
Sbjct: 176 EDLLGLNDFAAFCKQREGATTVRELQRFSWERAEPHLLVARVSADAFCHSMVRSLVGALL 235

Query: 190 AVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVITRDLRS 247
            VGD RR+  W  E L  A R+S  T APAHGLT + VDYP D+ELA+RA  TR +R+
Sbjct: 236 MVGDGRRSRTWPAEALRAAERTS--TVAPAHGLTLVGVDYPSDEELADRAARTRAVRT 291


>tr|C7MTX7|C7MTX7_SACVD Tax_Id=471857 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Saccharomonospora viridis]
          Length = 300

 Score =  225 bits (573), Expect = 4e-57
 Identities = 122/231 (52%), Positives = 148/231 (64%), Gaps = 6/231 (2%)

Query: 19  AGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGD--PEFXXXXXXXXXXXXXXXXXXX 76
           AGRTD GVHA GQV HVD+   A  +   R P + D  P+                    
Sbjct: 64  AGRTDAGVHAIGQVVHVDVTRLA-GETRSRMPISSDGLPDLDWARYRLNRVLPADVRVLS 122

Query: 77  IACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRELDLDSMSAASRDLLGL 136
           I  AP GFDARFSA++RHYRY++S AP+GV P + R   AWPR L +D+M+ A+  LLGL
Sbjct: 123 IRRAPAGFDARFSAVKRHYRYQVSDAPWGVSPLRRRDTLAWPRPLSVDAMNEAASSLLGL 182

Query: 137 RDFAVFCRHRHGATTIRELQRLEWSR-EGYLITAHITADAFCWSMVRSLIGALLAVGDHR 195
            DFA FC+ R GATTIREL  L W R + Y +   ++ADAFC SMVRSL+GALL VGD R
Sbjct: 183 HDFAAFCKRREGATTIRELMELRWCRVDEYELHLSVSADAFCHSMVRSLVGALLWVGDGR 242

Query: 196 RTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVITRDLR 246
           R +GW  E+L    RSS    APAHGLT ++VDYPPDDELA RA  TR++R
Sbjct: 243 RDVGWPLEVLRSRQRSS--VVAPAHGLTLVKVDYPPDDELASRAEKTRNIR 291


>tr|C0U7Z3|C0U7Z3_9ACTO Tax_Id=526225 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Geodermatophilus obscurus DSM
           43160]
          Length = 260

 Score =  225 bits (573), Expect = 4e-57
 Identities = 126/246 (51%), Positives = 145/246 (58%), Gaps = 11/246 (4%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           L+EA + V R PV L  AGRTD GVHATGQVAH D+P    ++  PR             
Sbjct: 26  LEEALSRVLRQPVSLTVAGRTDAGVHATGQVAHGDVPRAVWAEQRPR-----------LV 74

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                          +  AP  FDARF ALRRHY YRL+ A  G  P +      WPR L
Sbjct: 75  RRLRGVLPPDIAVHTVEEAPRDFDARFGALRRHYVYRLTDADSGPPPLRRADTVGWPRRL 134

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMV 181
           D D+M+ A+  LLGL DFA FCR R GATTIR L  L  +REG L+T   +ADAFC SMV
Sbjct: 135 DADAMAVAAELLLGLHDFAAFCRRREGATTIRTLLTLAVTREGDLVTVRASADAFCHSMV 194

Query: 182 RSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVI 241
           RSL+GAL AVG+ RR   W   LLT   RSS+    P  GLT + VDYPPDDELA RAV+
Sbjct: 195 RSLVGALTAVGEGRRPPEWPAALLTSTERSSEVPVVPPGGLTLVGVDYPPDDELAARAVL 254

Query: 242 TRDLRS 247
           TR LRS
Sbjct: 255 TRGLRS 260


>tr|C8XCL6|C8XCL6_NAKMY Tax_Id=479431 SubName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12;[Nakamurella
           multipartita]
          Length = 305

 Score =  223 bits (568), Expect = 1e-56
 Identities = 127/250 (50%), Positives = 154/250 (61%), Gaps = 4/250 (1%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRS-PHTGDPEFXXX 60
           L  A TT+ RTPVRL  AGRTD GVHA GQVAHVD+P  AL    PR      DPE    
Sbjct: 55  LTSALTTIVRTPVRLVVAGRTDAGVHAAGQVAHVDLPQAALLTVIPRDRADHPDPERAGR 114

Query: 61  XXXXXXXXXXXXXXXXIAC---APVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAW 117
                           +     AP GFDARFSALRR YRYR+ TA +GV+P   R+V A 
Sbjct: 115 LGLLRRLGGLLPPDVRVRAVLAAPEGFDARFSALRRRYRYRIGTAEWGVEPADRRFVYAR 174

Query: 118 PRELDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFC 177
            R LD+++M+ A++ L+GL DF  FCR R GATTIR+LQ+L  +R G  +   + ADAFC
Sbjct: 175 RRTLDVEAMTLAAQALVGLHDFHAFCRPREGATTIRDLQKLTVTRAGDEVRIDVVADAFC 234

Query: 178 WSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAE 237
            SMVR+L+G+LLAVG+ R       ELL    R+S F  APAHGL+ + VDYPP  ELA 
Sbjct: 235 HSMVRALVGSLLAVGELRMPTARPAELLAAGERTSAFAVAPAHGLSLVGVDYPPPAELAR 294

Query: 238 RAVITRDLRS 247
           RA  TR +RS
Sbjct: 295 RAHDTRAVRS 304


>tr|C8RUH0|C8RUH0_CORJE Tax_Id=525262 (truA)SubName: Full=tRNA
           pseudouridine synthase A; EC=4.2.1.70;[Corynebacterium
           jeikeium ATCC 43734]
          Length = 328

 Score =  215 bits (548), Expect = 3e-54
 Identities = 121/252 (48%), Positives = 143/252 (56%), Gaps = 12/252 (4%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VL E  + V R P+ L  AGRTD GVHA+GQV H DIP  A  + +   P          
Sbjct: 58  VLQEKLSLVTRHPIELVVAGRTDAGVHASGQVCHADIPADAFEQRSLTRPED-------L 110

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                            + AP GFDARFSALRRHY YR++T P G  P +AR   AW   
Sbjct: 111 VRRLSRMLPSDVRLHGASVAPQGFDARFSALRRHYIYRVTTHPAGPVPVRARDTAAWRHP 170

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEW-----SREGYLITAHITADA 175
           +DL+   AAS  L+GL DFA FC+ R GATT+RELQ   W       E     AH+TADA
Sbjct: 171 IDLEKTQAASDALIGLNDFAAFCKAREGATTVRELQEFRWVDVSTEAEPQTYEAHVTADA 230

Query: 176 FCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDEL 235
           FCWSMVRSL+GA L VG  +R   +   LL +  RSS    APA GL  +RVDYP D+EL
Sbjct: 231 FCWSMVRSLVGAALTVGSGKRPDDFTPGLLKETKRSSAVPVAPAEGLNLVRVDYPADEEL 290

Query: 236 AERAVITRDLRS 247
           AERA+ TR  RS
Sbjct: 291 AERALTTRAKRS 302


>tr|Q4JTC5|Q4JTC5_CORJK Tax_Id=306537 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Corynebacterium jeikeium]
          Length = 328

 Score =  214 bits (545), Expect = 7e-54
 Identities = 121/252 (48%), Positives = 143/252 (56%), Gaps = 12/252 (4%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VL E  + V R P+ L  AGRTD GVHA+GQV H DIP  A  + +   P          
Sbjct: 58  VLQEKLSLVTRHPIELVVAGRTDAGVHASGQVCHADIPVDAFEQRSLTRPED-------L 110

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                            + AP GFDARFSALRRHY YR++T P G  P +AR   AW   
Sbjct: 111 VRRLSRMLPADVRLHGASVAPQGFDARFSALRRHYIYRVTTHPAGPVPVRARDTAAWRHP 170

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEW-----SREGYLITAHITADA 175
           +DL+   AAS  L+GL DFA FC+ R GATT+RELQ   W       E     AH+TADA
Sbjct: 171 IDLEKTQAASDALIGLNDFAAFCKAREGATTVRELQEFRWVDVSTEAEPQTYEAHVTADA 230

Query: 176 FCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDEL 235
           FCWSMVRSL+GA L VG  +R   +   LL +  RSS    APA GL  +RVDYP D+EL
Sbjct: 231 FCWSMVRSLVGAALTVGSGKRPDDFTPGLLKETKRSSAVPVAPAEGLNLVRVDYPADEEL 290

Query: 236 AERAVITRDLRS 247
           AERA+ TR  RS
Sbjct: 291 AERALTTRAKRS 302


>tr|C4LKY3|C4LKY3_CORK4 Tax_Id=645127 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Corynebacterium kroppenstedtii]
          Length = 298

 Score =  213 bits (543), Expect = 1e-53
 Identities = 125/251 (49%), Positives = 152/251 (60%), Gaps = 11/251 (4%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           +++AF TV R PV+L  AGRTD GVHA+GQVAHVDIP   L   N RS H  DP      
Sbjct: 52  IEQAFQTVVRQPVQLVVAGRTDAGVHASGQVAHVDIPRGIL---NTRSIHN-DPS--TLV 105

Query: 62  XXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121
                           + AP GFDARFSALRRHY YR++T   G  P +AR    W R +
Sbjct: 106 SRFARLLRPDVRIRGCSFAPDGFDARFSALRRHYVYRVTTNRAGALPTRARDTAVWDRPV 165

Query: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSR-----EGYLITAHITADAF 176
           +LDSM+ A+  L+GL DFA FCR R  ATTIR+LQ   W       E  +  A +TADAF
Sbjct: 166 NLDSMNNAAEVLVGLHDFAAFCRARPHATTIRDLQHFSWHEVSTAVEPDVYEARVTADAF 225

Query: 177 CWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELA 236
           CW+MVRS++GA LAVG+ +R  G+  ++L   SR      APA+GLT   VDYP DDELA
Sbjct: 226 CWNMVRSIVGASLAVGEGKRPDGFMEDMLAHDSRHPMVPVAPANGLTLTGVDYPADDELA 285

Query: 237 ERAVITRDLRS 247
            RA  TR +RS
Sbjct: 286 ARAEQTRGIRS 296


>tr|C5VEY4|C5VEY4_9CORY Tax_Id=553207 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Corynebacterium matruchotii ATCC 14266]
          Length = 290

 Score =  211 bits (536), Expect = 8e-53
 Identities = 118/251 (47%), Positives = 145/251 (57%), Gaps = 11/251 (4%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VL++A T V R P+ L  AGRTD GVHA  QVAH D+P  AL   +      GDP     
Sbjct: 34  VLEDALTLVLRQPIALTVAGRTDAGVHAAAQVAHFDVPAAALDTRSI----AGDPGRLVR 89

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           IA  P  FDARFSALRRHY YRL+T P G  P +       P+ 
Sbjct: 90  RLARLLPTDVRVHAATIA--PPDFDARFSALRRHYVYRLTTHPRGALPTRVTDTAHHPKP 147

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSR-----EGYLITAHITADA 175
           +DL +M A + +L+GL DFA FCRHR GATTIR+LQ   W+      E     AH+TADA
Sbjct: 148 VDLAAMQACAAELIGLHDFAAFCRHRDGATTIRDLQEFTWNDISTPIEPDTFEAHVTADA 207

Query: 176 FCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDEL 235
           FCWSMVRSL+G  L VG+ +R  G+   LL + SRS+    APA GL+ + VDYP + +L
Sbjct: 208 FCWSMVRSLVGCCLVVGEGKRPAGFATSLLAETSRSALVPVAPAAGLSLVGVDYPDESQL 267

Query: 236 AERAVITRDLR 246
           A RA +TR  R
Sbjct: 268 AARAQVTRAQR 278


>tr|C2CQ41|C2CQ41_CORST Tax_Id=525268 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Corynebacterium striatum ATCC 6940]
          Length = 285

 Score =  211 bits (536), Expect = 8e-53
 Identities = 113/253 (44%), Positives = 148/253 (58%), Gaps = 11/253 (4%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VL++  + + R  V L  AGRTD GVH+ GQVAH D+P  AL + +      GDP     
Sbjct: 33  VLEDNLSMILRHDVELTVAGRTDAGVHSAGQVAHFDVPSEALDQRSI----DGDPA--KL 86

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                              AP GFDARFSAL+RHY YR++T P G  P +AR    WP+ 
Sbjct: 87  VRRLAKLLPEDVRVHACTAAPEGFDARFSALQRHYVYRITTHPRGALPTRARDTAQWPKP 146

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEW-----SREGYLITAHITADA 175
           +D+D+M  A+  L+GL DFA FC+ +  ATTIR+L   EW       E  L  A + ADA
Sbjct: 147 VDIDAMQEAATTLVGLHDFAAFCKAKPHATTIRDLHSFEWVDVSTPTEPQLYEARVCADA 206

Query: 176 FCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDEL 235
           FCWSMVRSL+G  L VG+  R + +   +L ++ RSS    APA GL+ +RVDYP D+EL
Sbjct: 207 FCWSMVRSLVGCCLRVGEGARDVDFATAMLAESQRSSQIPLAPAKGLSLVRVDYPADEEL 266

Query: 236 AERAVITRDLRSS 248
           A RA +TRD R++
Sbjct: 267 AARAAVTRDRRAA 279


>tr|C0E0J5|C0E0J5_9CORY Tax_Id=566549 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Corynebacterium matruchotii ATCC
           33806]
          Length = 290

 Score =  211 bits (536), Expect = 8e-53
 Identities = 118/251 (47%), Positives = 145/251 (57%), Gaps = 11/251 (4%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VL++A T V R P+ L  AGRTD GVHA  QVAH D+P  AL   +      GDP     
Sbjct: 34  VLEDALTLVLRQPIALTVAGRTDAGVHAVAQVAHFDVPAAALDTRSI----AGDPGRLVR 89

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           IA  P  FDARFSALRRHY YRL+T P G  P +       P+ 
Sbjct: 90  RLARLLPTDVRVHAATIA--PPDFDARFSALRRHYVYRLTTHPRGALPTRVTDTAHHPKP 147

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSR-----EGYLITAHITADA 175
           +DL +M A + +L+GL DFA FCRHR GATTIR+LQ   W+      E     AH+TADA
Sbjct: 148 VDLAAMQACAAELIGLHDFAAFCRHRDGATTIRDLQEFTWNDISTPIEPDTFEAHVTADA 207

Query: 176 FCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDEL 235
           FCWSMVRSL+G  L VG+ +R  G+   LL + SRS+    APA GL+ + VDYP + +L
Sbjct: 208 FCWSMVRSLVGCCLVVGEGKRPAGFATSLLAETSRSALVPVAPAAGLSLVGVDYPDESQL 267

Query: 236 AERAVITRDLR 246
           A RA +TR  R
Sbjct: 268 AARAQVTRAQR 278


>sp|Q8FS31|TRUA_COREF Tax_Id=152794 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Corynebacterium efficiens]
          Length = 282

 Score =  209 bits (532), Expect = 2e-52
 Identities = 115/253 (45%), Positives = 146/253 (57%), Gaps = 11/253 (4%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VL++    V R PV L  AGRTD GVHA GQVAH DIP  +L + +      GDP     
Sbjct: 31  VLEDNLGMVLRAPVELTVAGRTDAGVHAAGQVAHFDIPRESLQQRSI----DGDPT--KL 84

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           +  AP GFDARFSALRRHY YR++T P G  P + R   AWP+ 
Sbjct: 85  VRRLSRLLPEDIRVHGVNYAPEGFDARFSALRRHYVYRITTHPAGPLPTRVRDTAAWPKP 144

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEW-----SREGYLITAHITADA 175
           +D+ +M  A+  L+GL DF  FC+ +  A+T+RELQ   W       E  L  AH+ ADA
Sbjct: 145 VDIQAMQTAADVLIGLHDFVAFCKAKPNASTVRELQEFTWHDVSTPTEPQLYEAHVVADA 204

Query: 176 FCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDEL 235
           FCWSMVRSL+G+ +AVG+ RR   +  +LLT   RS D   APA GL+ + VDYP DD+L
Sbjct: 205 FCWSMVRSLVGSCMAVGEGRRAGDFTAQLLTATERSPDVPVAPAKGLSLVGVDYPDDDQL 264

Query: 236 AERAVITRDLRSS 248
             RA  TR +R +
Sbjct: 265 RARAEETRAVRGA 277


>tr|C8NMD3|C8NMD3_COREF Tax_Id=196164 (truA)SubName: Full=tRNA
           pseudouridine synthase A; EC=4.2.1.70;[Corynebacterium
           efficiens YS-314]
          Length = 282

 Score =  209 bits (532), Expect = 2e-52
 Identities = 115/253 (45%), Positives = 146/253 (57%), Gaps = 11/253 (4%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VL++    V R PV L  AGRTD GVHA GQVAH DIP  +L + +      GDP     
Sbjct: 31  VLEDNLGMVLRAPVELTVAGRTDAGVHAAGQVAHFDIPRESLQQRSI----DGDPT--KL 84

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           +  AP GFDARFSALRRHY YR++T P G  P + R   AWP+ 
Sbjct: 85  VRRLSRLLPEDIRVHGVNYAPEGFDARFSALRRHYVYRITTHPAGPLPTRVRDTAAWPKP 144

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEW-----SREGYLITAHITADA 175
           +D+ +M  A+  L+GL DF  FC+ +  A+T+RELQ   W       E  L  AH+ ADA
Sbjct: 145 VDIQAMQTAADVLIGLHDFVAFCKAKPNASTVRELQEFTWHDVSTPTEPQLYEAHVVADA 204

Query: 176 FCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDEL 235
           FCWSMVRSL+G+ +AVG+ RR   +  +LLT   RS D   APA GL+ + VDYP DD+L
Sbjct: 205 FCWSMVRSLVGSCMAVGEGRRAGDFTAQLLTATERSPDVPVAPAKGLSLVGVDYPDDDQL 264

Query: 236 AERAVITRDLRSS 248
             RA  TR +R +
Sbjct: 265 RARAEETRAVRGA 277


>sp|P60349|TRUA_CORDI Tax_Id=1717 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Corynebacterium diphtheriae]
          Length = 288

 Score =  209 bits (531), Expect = 3e-52
 Identities = 113/252 (44%), Positives = 147/252 (58%), Gaps = 11/252 (4%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           ++++  T V + P+ L  AGRTD GVHATGQVAH D+   AL   +      GDP     
Sbjct: 36  IIEDTLTLVLQRPIDLTVAGRTDAGVHATGQVAHFDVDPAALETRSI----AGDPA--RL 89

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           ++  P  FDARFSALRRHY YR++T P G  P +AR    WPR 
Sbjct: 90  IRRLARLMPDDVRIHNMSFVPAEFDARFSALRRHYVYRVTTHPRGALPTRARDTAHWPRS 149

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEW-----SREGYLITAHITADA 175
           +D+ +M AA+  L+G+ DFA FC++R GA+TIR+LQ   W      +E  L  AH+TADA
Sbjct: 150 VDISAMQAAADALIGMHDFAAFCKYREGASTIRDLQEFTWHDVSTPQEPQLYEAHVTADA 209

Query: 176 FCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDEL 235
           FCWSMVRSL+GA L VG+ +R  G+   LL +  RSS    A A GL+ + VDYP DD+L
Sbjct: 210 FCWSMVRSLVGACLVVGEGKRADGFTEHLLGETKRSSSIPVAAACGLSLVGVDYPSDDQL 269

Query: 236 AERAVITRDLRS 247
             RA   R  R+
Sbjct: 270 GARAEQARAYRT 281


>tr|C6R9B4|C6R9B4_9CORY Tax_Id=553206 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Corynebacterium tuberculostearicum SK141]
          Length = 297

 Score =  208 bits (529), Expect = 5e-52
 Identities = 116/253 (45%), Positives = 146/253 (57%), Gaps = 11/253 (4%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VL+E    + RT V L  AGRTD GVHA GQVAHVD+P   L++ +      G+P     
Sbjct: 50  VLEEKLAMIARTEVPLTVAGRTDAGVHARGQVAHVDVPTEMLAQRSV----AGEP--GKL 103

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                              AP GFDARFSALRRHY YR++T P G  P +AR    W + 
Sbjct: 104 VRRLAKLLPEDVRVHGCEFAPAGFDARFSALRRHYVYRITTNPRGALPTRARDTAEWIKP 163

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEW-----SREGYLITAHITADA 175
           +D+D+M  A+  L+GL DFA FC+ +  ATTIRELQ   W       E  L  A ++ADA
Sbjct: 164 VDIDAMQEAATALVGLHDFAAFCKAKPNATTIRELQEFSWRDVSTPEEPELYEARVSADA 223

Query: 176 FCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDEL 235
           FCWSMVRSL+G  L VG+ RR   +   LL +  RSS    APA GL+ + VDYP  D+L
Sbjct: 224 FCWSMVRSLVGCCLRVGEGRRDTDFAAALLQETKRSSSIPVAPAKGLSLVAVDYPAADKL 283

Query: 236 AERAVITRDLRSS 248
           A RA +TR+ RS+
Sbjct: 284 AARAEVTRERRSA 296


>tr|C2BK37|C2BK37_9CORY Tax_Id=525264 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 297

 Score =  208 bits (529), Expect = 5e-52
 Identities = 116/253 (45%), Positives = 145/253 (57%), Gaps = 11/253 (4%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VL+E    + RT V L  AGRTD GVHA GQVAHVD+P   L++ +      G+P     
Sbjct: 50  VLEEKLAMIARTEVPLTVAGRTDAGVHARGQVAHVDVPTEMLAQRSV----AGEP--GKL 103

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                              AP GFDARFSALRRHY YR++T P G  P +AR    W + 
Sbjct: 104 VRRLAKLLPEDVRVHGCEFAPAGFDARFSALRRHYVYRITTNPRGALPTRARDTAEWIKP 163

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEW-----SREGYLITAHITADA 175
           +D+D+M  A+  L+GL DFA FC+ +  ATTIRELQ   W       E  L  A ++ADA
Sbjct: 164 VDIDAMQEAATALVGLHDFAAFCKAKPNATTIRELQEFSWRDASTPEEPELFEARVSADA 223

Query: 176 FCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDEL 235
           FCWSMVRSL+G  L VG+ RR   +   LL +  RSS    APA GL+ + VDYP  D L
Sbjct: 224 FCWSMVRSLVGCCLRVGEGRRDADFAAALLQETKRSSSIPVAPAKGLSLVAVDYPAADRL 283

Query: 236 AERAVITRDLRSS 248
           A RA +TR+ RS+
Sbjct: 284 AARAEVTRERRSA 296


>tr|B1VEY4|B1VEY4_CORU7 Tax_Id=504474 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Corynebacterium urealyticum]
          Length = 324

 Score =  207 bits (528), Expect = 6e-52
 Identities = 117/251 (46%), Positives = 138/251 (54%), Gaps = 12/251 (4%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VL+E  T V RTPV L  AGRTD GVHA GQV H DIP  A +  +   P          
Sbjct: 79  VLEEKLTLVCRTPVELTVAGRTDAGVHADGQVCHADIPAEAFTHRSLARPED-------L 131

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                              AP GFDARFSALRRHY YR+ TAP G  P + R    W R 
Sbjct: 132 VRRLSRMLPEDIRLNAAVAAPEGFDARFSALRRHYVYRVCTAPGGPLPRRVRDTARWRRP 191

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWS-----REGYLITAHITADA 175
           +DL+ +  A+  L+GL +FA +C+ R GATTIRELQ   W       E     AH+ ADA
Sbjct: 192 VDLEKVQIAADALVGLNNFAAYCKAREGATTIRELQEFTWKDVSTPAEPQTYEAHVVADA 251

Query: 176 FCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDEL 235
           FCWSMVRS++GA L VG+ +R  G+  ELL    RSS    APA GL  + VDYP   EL
Sbjct: 252 FCWSMVRSIVGACLTVGEGKRPEGFTAELLELDERSSQVPVAPAEGLNLVGVDYPDASEL 311

Query: 236 AERAVITRDLR 246
           A RA  TR +R
Sbjct: 312 AARAAETRAVR 322


>tr|C0WIL8|C0WIL8_9CORY Tax_Id=525260 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Corynebacterium accolens ATCC 49725]
          Length = 293

 Score =  204 bits (520), Expect = 6e-51
 Identities = 114/253 (45%), Positives = 146/253 (57%), Gaps = 11/253 (4%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VL+E    + RT V L  AGRTD GVHA GQVAHVD+P   L + +       DP     
Sbjct: 46  VLEEQLAMIARTEVPLTVAGRTDAGVHARGQVAHVDVPQEMLEQRSV----ANDP--GKL 99

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                              AP GFDARFSALRRHY YR++T+P G  P +AR    W + 
Sbjct: 100 VRRLAKLLPEDVRVHGCDFAPEGFDARFSALRRHYVYRITTSPRGALPTRARDTAEWFKP 159

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWS-----REGYLITAHITADA 175
           +D+ +M  A+  L+GL DFA FC+ +  ATTIRELQ   W       E  L  A +TADA
Sbjct: 160 VDIGAMQDAANALVGLHDFAAFCKAKPNATTIRELQEFSWQDVSTPEEPQLFEARVTADA 219

Query: 176 FCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDEL 235
           FCWSMVRSL+G  L+VG+ RR + +   LL +  RSS    APA GL+ ++VDYP   E+
Sbjct: 220 FCWSMVRSLVGCCLSVGEGRRDVDFAAALLQETKRSSRIPVAPAKGLSLVQVDYPEAGEM 279

Query: 236 AERAVITRDLRSS 248
           + RA ITR+ R++
Sbjct: 280 SARADITREKRTT 292


>sp|Q2JFE6|TRUA_FRASC Tax_Id=106370 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Frankia sp.]
          Length = 274

 Score =  201 bits (511), Expect = 6e-50
 Identities = 118/248 (47%), Positives = 147/248 (59%), Gaps = 18/248 (7%)

Query: 2   LDEAFTTVFRTP-VRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           +++A   V R P VRL  AGRTD+GVHA GQVAHVD+P               D      
Sbjct: 35  VEDALMRVARLPAVRLTVAGRTDSGVHAVGQVAHVDLPD--------------DVPLGGL 80

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           +A AP GFDARFSAL R Y YR++ APYG +P +     AWPR 
Sbjct: 81  ARRLNGVLDRAVRIIGLAPAPPGFDARFSALSRRYVYRITDAPYGAEPLRRFDTLAWPRP 140

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSR--EGYLITAHITADAFCW 178
           LD+ +M+AA+  L+G  DFA FCR R GATT+R L RL+  R  EG ++ A + ADAFC 
Sbjct: 141 LDVPAMAAAALFLVGEHDFAAFCRRREGATTVRTLLRLDVLRRPEG-VVVADVEADAFCH 199

Query: 179 SMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAER 238
           SMVR+L+GALLAVG+ R+   W   +L +  R    T APAHGLT + V YPPD ELA R
Sbjct: 200 SMVRALVGALLAVGEGRKPPQWPAAVLHRGVRDPAVTVAPAHGLTLVDVRYPPDPELAAR 259

Query: 239 AVITRDLR 246
           A +TR +R
Sbjct: 260 AEVTRAVR 267


>sp|Q8NSV0|TRUA_CORGL Tax_Id=1718 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Corynebacterium glutamicum]
          Length = 289

 Score =  200 bits (509), Expect = 1e-49
 Identities = 112/251 (44%), Positives = 144/251 (57%), Gaps = 11/251 (4%)

Query: 1   VLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXX 60
           VL++  + V R  V L  AGRTD GVHA GQVAH DIP  AL + +      GDP     
Sbjct: 31  VLEDNLSMVLRETVELTVAGRTDAGVHAAGQVAHFDIPAHALEQRSI----DGDPS--KL 84

Query: 61  XXXXXXXXXXXXXXXXIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120
                           +  A  GFDARFSA+RRHY YR++T P G  P +      WP+ 
Sbjct: 85  VRRLGRLLPDDIRVHGVRFAEPGFDARFSAMRRHYVYRITTHPAGALPTRRHDTAQWPKP 144

Query: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSR-----EGYLITAHITADA 175
           ++L+ M  A+  LLGL DF  FC+ +  ATT+RELQ+  W       E  +  AH+ ADA
Sbjct: 145 VELERMQLAADALLGLHDFVAFCKAKPHATTVRELQKFAWKDVSTDIEPQVYEAHVVADA 204

Query: 176 FCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDEL 235
           FCWSMVRSL+G+ +AVG+ RR  G+  ELL  + RS     APA GL+ + VDYP  D+L
Sbjct: 205 FCWSMVRSLVGSCMAVGEGRRGSGFTAELLDASERSPMVPVAPAKGLSLVGVDYPSADKL 264

Query: 236 AERAVITRDLR 246
            ERA+ TR +R
Sbjct: 265 QERALETRAVR 275


>tr|C3PL40|C3PL40_CORA7 Tax_Id=548476 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Corynebacterium aurimucosum]
          Length = 286

 Score =  200 bits (508), Expect = 1e-49
 Identities = 115/254 (45%), Positives = 146/254 (57%), Gaps = 15/254 (5%)

Query: 2   LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFXXXX 61
           ++E  + V R PV L  AGRTD GVHA+GQVAH D    ALS+ +      G+P      
Sbjct: 35  VEEKLSMVLRHPVELTVAGRTDAGVHASGQVAHFDTTRAALSQRSI----DGEPHKLVRR 90

Query: 62  XXXXXXXXXXXXXXXIACAPVG--FDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPR 119
                           AC  V   FDARFSALRRHY YR++T P G  P +AR    W +
Sbjct: 91  LAKLLPVDVRVH----ACTEVSPDFDARFSALRRHYVYRITTHPRGALPTRARDTATWLK 146

Query: 120 ELDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWS-----REGYLITAHITAD 174
            +DLD M AA+  L+GL DF  FC+ +  ATTIREL   EW       E  L  AH++AD
Sbjct: 147 PVDLDLMQAAADRLVGLNDFVAFCKAKPHATTIRELLAFEWKDVSTPAEPQLYEAHVSAD 206

Query: 175 AFCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDE 234
           AFCWSMVR L+G  L VG+  R + + G++L + SRSS    APA GL+ + VDYP  D+
Sbjct: 207 AFCWSMVRCLVGCCLRVGEGSRDVEFAGQMLNETSRSSQIPLAPAAGLSLVGVDYPDADQ 266

Query: 235 LAERAVITRDLRSS 248
           LA RA +TR  R++
Sbjct: 267 LAARAEMTRSRRAA 280


  Database: Amellifera_nr
    Posted date:  Jan 15, 2010  5:10 AM
  Number of letters in database: 3,808,957,724
  Number of sequences in database:  11,153,314
  
Lambda     K      H
   0.324    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11153314
Number of Hits to DB: 1,673,412,810
Number of extensions: 59478936
Number of successful extensions: 162174
Number of sequences better than 10.0: 2200
Number of HSP's gapped: 159237
Number of HSP's successfully gapped: 3335
Length of query: 249
Length of database: 3,808,957,724
Length adjustment: 134
Effective length of query: 115
Effective length of database: 2,314,413,648
Effective search space: 266157569520
Effective search space used: 266157569520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 78 (34.7 bits)