BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ML1957c (347 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,153,314 sequences; 3,808,957,724 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|Q9X798|RPOA_MYCLE Tax_Id=1769 (rpoA)RecName: Full=DNA-directe... 678 0.0 tr|B8ZSH6|B8ZSH6_MYCLB Tax_Id=561304 (rpoA)SubName: Full=[alpha]... 678 0.0 sp|P66701|RPOA_MYCTU Tax_Id=1773 (rpoA)RecName: Full=DNA-directe... 655 0.0 sp|A5U8D3|RPOA_MYCTA Tax_Id=419947 (rpoA)RecName: Full=DNA-direc... 655 0.0 sp|A1KPE3|RPOA_MYCBP Tax_Id=410289 (rpoA)RecName: Full=DNA-direc... 655 0.0 sp|P66702|RPOA_MYCBO Tax_Id=1765 (rpoA)RecName: Full=DNA-directe... 655 0.0 tr|C6DLX8|C6DLX8_MYCTK Tax_Id=478434 SubName: Full=DNA-directed ... 655 0.0 tr|C1AHR5|C1AHR5_MYCBT Tax_Id=561275 (rpoA)SubName: Full=DNA-dir... 655 0.0 tr|A5WT30|A5WT30_MYCTF Tax_Id=336982 SubName: Full=DNA-directed ... 655 0.0 tr|A2VPN5|A2VPN5_MYCTU Tax_Id=348776 SubName: Full=DNA-directed ... 655 0.0 sp|A0PMB7|RPOA_MYCUA Tax_Id=362242 (rpoA)RecName: Full=DNA-direc... 654 0.0 tr|B2HCX4|B2HCX4_MYCMM Tax_Id=216594 (rpoA)SubName: Full=DNA-dir... 654 0.0 sp|Q73S43|RPOA_MYCPA Tax_Id=1770 (rpoA)RecName: Full=DNA-directe... 648 0.0 sp|A0QKU5|RPOA_MYCA1 Tax_Id=243243 (rpoA)RecName: Full=DNA-direc... 648 0.0 sp|A1T520|RPOA_MYCVP Tax_Id=350058 (rpoA)RecName: Full=DNA-direc... 632 e-179 sp|Q1BD08|RPOA_MYCSS Tax_Id=164756 (rpoA)RecName: Full=DNA-direc... 629 e-178 sp|A1UBY5|RPOA_MYCSK Tax_Id=189918 (rpoA)RecName: Full=DNA-direc... 629 e-178 sp|A3PVL8|RPOA_MYCSJ Tax_Id=164757 (rpoA)RecName: Full=DNA-direc... 629 e-178 tr|A4TEJ3|A4TEJ3_MYCGI Tax_Id=350054 SubName: Full=DNA-directed ... 627 e-178 tr|A4KLY1|A4KLY1_MYCTU Tax_Id=395095 SubName: Full=DNA-directed ... 625 e-177 tr|B1MG99|B1MG99_MYCA9 Tax_Id=561007 SubName: Full=DNA-directed ... 623 e-176 sp|A0QSL8|RPOA_MYCS2 Tax_Id=246196 (rpoA)RecName: Full=DNA-direc... 613 e-174 tr|D0L2F2|D0L2F2_9ACTO Tax_Id=526226 SubName: Full=DNA-directed ... 608 e-172 sp|Q5Z1K9|RPOA_NOCFA Tax_Id=37329 (rpoA)RecName: Full=DNA-direct... 607 e-172 sp|Q0S3E7|RPOA_RHOSR Tax_Id=101510 (rpoA)RecName: Full=DNA-direc... 603 e-171 tr|C1B041|C1B041_RHOOB Tax_Id=632772 (rpoA)SubName: Full=DNA-dir... 603 e-171 tr|C0ZW54|C0ZW54_RHOE4 Tax_Id=234621 (rpoA)SubName: Full=DNA-dir... 603 e-171 tr|C3JGZ6|C3JGZ6_RHOER Tax_Id=596309 (rpoA)SubName: Full=DNA-dir... 603 e-171 tr|C2AM21|C2AM21_TSUPA Tax_Id=521096 SubName: Full=DNA-directed ... 601 e-170 tr|C6WLZ6|C6WLZ6_ACTMD Tax_Id=446462 SubName: Full=DNA-directed ... 565 e-159 sp|A4FPJ2|RPOA_SACEN Tax_Id=405948 (rpoA)RecName: Full=DNA-direc... 558 e-157 tr|C7MTX5|C7MTX5_SACVD Tax_Id=471857 SubName: Full=DNA-directed ... 555 e-156 tr|C8XCL4|C8XCL4_NAKMY Tax_Id=479431 SubName: Full=DNA-directed ... 545 e-153 tr|C0U7Z0|C0U7Z0_9ACTO Tax_Id=526225 SubName: Full=DNA-directed ... 527 e-148 tr|A3TH07|A3TH07_9MICO Tax_Id=313589 SubName: Full=DNA-directed ... 522 e-146 tr|C0VBD5|C0VBD5_9MICO Tax_Id=446471 SubName: Full=DNA-directed ... 517 e-145 tr|C7R162|C7R162_JONDD Tax_Id=471856 SubName: Full=DNA-directed ... 514 e-144 tr|C4ECV9|C4ECV9_STRRS Tax_Id=479432 SubName: Full=DNA-directed ... 514 e-144 tr|C9KDU8|C9KDU8_9MICO Tax_Id=446469 SubName: Full=DNA-directed ... 514 e-144 tr|C7Q436|C7Q436_CATAD Tax_Id=479433 SubName: Full=DNA-directed ... 513 e-143 sp|Q2JFE8|RPOA_FRASC Tax_Id=106370 (rpoA)RecName: Full=DNA-direc... 511 e-143 sp|C5C0G1|RPOA_BEUC1 Tax_Id=471853 (rpoA)RecName: Full=DNA-direc... 511 e-143 tr|C4LKZ1|C4LKZ1_CORK4 Tax_Id=645127 SubName: Full=DNA-directed ... 511 e-143 sp|A0LRP8|RPOA_ACIC1 Tax_Id=351607 (rpoA)RecName: Full=DNA-direc... 511 e-143 tr|A8LB05|A8LB05_FRASN Tax_Id=298653 SubName: Full=DNA-directed ... 511 e-143 tr|C1WG44|C1WG44_9ACTO Tax_Id=479435 SubName: Full=DNA-directed ... 511 e-143 tr|C1RK25|C1RK25_9CELL Tax_Id=446466 SubName: Full=DNA-directed ... 510 e-142 sp|Q0RRP3|RPOA_FRAAA Tax_Id=326424 (rpoA)RecName: Full=DNA-direc... 509 e-142 tr|B5G8Q8|B5G8Q8_9ACTO Tax_Id=465543 SubName: Full=DNA-directed ... 506 e-141 tr|B4V4X3|B4V4X3_9ACTO Tax_Id=465541 SubName: Full=DNA-directed ... 505 e-141 >sp|Q9X798|RPOA_MYCLE Tax_Id=1769 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Mycobacterium leprae] Length = 347 Score = 678 bits (1749), Expect = 0.0 Identities = 347/347 (100%), Positives = 347/347 (100%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN Sbjct: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA Sbjct: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL Sbjct: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 >tr|B8ZSH6|B8ZSH6_MYCLB Tax_Id=561304 (rpoA)SubName: Full=[alpha] subunit of RNA polymerase;[Mycobacterium leprae] Length = 347 Score = 678 bits (1749), Expect = 0.0 Identities = 347/347 (100%), Positives = 347/347 (100%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN Sbjct: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA Sbjct: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL Sbjct: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 >sp|P66701|RPOA_MYCTU Tax_Id=1773 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Mycobacterium tuberculosis] Length = 347 Score = 655 bits (1691), Expect = 0.0 Identities = 332/347 (95%), Positives = 340/347 (97%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSED+LTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVTEIILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 PGM IATLNDKGK+E ELVVERGRGYVPAVQNRA GAEIGRIPVDSIYSPVLKVTYKVDA Sbjct: 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 LHQLGLSLKDSP SFDPSEVAGYDV TGTWST+GAYD QDYAETEQL Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347 >sp|A5U8D3|RPOA_MYCTA Tax_Id=419947 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Mycobacterium tuberculosis] Length = 347 Score = 655 bits (1691), Expect = 0.0 Identities = 332/347 (95%), Positives = 340/347 (97%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSED+LTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVTEIILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 PGM IATLNDKGK+E ELVVERGRGYVPAVQNRA GAEIGRIPVDSIYSPVLKVTYKVDA Sbjct: 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 LHQLGLSLKDSP SFDPSEVAGYDV TGTWST+GAYD QDYAETEQL Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347 >sp|A1KPE3|RPOA_MYCBP Tax_Id=410289 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Mycobacterium bovis] Length = 347 Score = 655 bits (1691), Expect = 0.0 Identities = 332/347 (95%), Positives = 340/347 (97%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSED+LTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVTEIILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 PGM IATLNDKGK+E ELVVERGRGYVPAVQNRA GAEIGRIPVDSIYSPVLKVTYKVDA Sbjct: 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 LHQLGLSLKDSP SFDPSEVAGYDV TGTWST+GAYD QDYAETEQL Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347 >sp|P66702|RPOA_MYCBO Tax_Id=1765 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Mycobacterium bovis] Length = 347 Score = 655 bits (1691), Expect = 0.0 Identities = 332/347 (95%), Positives = 340/347 (97%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSED+LTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVTEIILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 PGM IATLNDKGK+E ELVVERGRGYVPAVQNRA GAEIGRIPVDSIYSPVLKVTYKVDA Sbjct: 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 LHQLGLSLKDSP SFDPSEVAGYDV TGTWST+GAYD QDYAETEQL Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347 >tr|C6DLX8|C6DLX8_MYCTK Tax_Id=478434 SubName: Full=DNA-directed RNA polymerase subunit alpha rpoA;[Mycobacterium tuberculosis] Length = 347 Score = 655 bits (1691), Expect = 0.0 Identities = 332/347 (95%), Positives = 340/347 (97%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSED+LTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVTEIILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 PGM IATLNDKGK+E ELVVERGRGYVPAVQNRA GAEIGRIPVDSIYSPVLKVTYKVDA Sbjct: 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 LHQLGLSLKDSP SFDPSEVAGYDV TGTWST+GAYD QDYAETEQL Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347 >tr|C1AHR5|C1AHR5_MYCBT Tax_Id=561275 (rpoA)SubName: Full=DNA-directed RNA polymerase subunit alpha; EC=2.7.7.6;[Mycobacterium bovis] Length = 347 Score = 655 bits (1691), Expect = 0.0 Identities = 332/347 (95%), Positives = 340/347 (97%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSED+LTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVTEIILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 PGM IATLNDKGK+E ELVVERGRGYVPAVQNRA GAEIGRIPVDSIYSPVLKVTYKVDA Sbjct: 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 LHQLGLSLKDSP SFDPSEVAGYDV TGTWST+GAYD QDYAETEQL Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347 >tr|A5WT30|A5WT30_MYCTF Tax_Id=336982 SubName: Full=DNA-directed RNA polymerase alpha subunit rpoA;[Mycobacterium tuberculosis] Length = 347 Score = 655 bits (1691), Expect = 0.0 Identities = 332/347 (95%), Positives = 340/347 (97%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSED+LTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVTEIILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 PGM IATLNDKGK+E ELVVERGRGYVPAVQNRA GAEIGRIPVDSIYSPVLKVTYKVDA Sbjct: 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 LHQLGLSLKDSP SFDPSEVAGYDV TGTWST+GAYD QDYAETEQL Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347 >tr|A2VPN5|A2VPN5_MYCTU Tax_Id=348776 SubName: Full=DNA-directed RNA polymerase (Alpha chain) rpoA;[Mycobacterium tuberculosis C] Length = 347 Score = 655 bits (1691), Expect = 0.0 Identities = 332/347 (95%), Positives = 340/347 (97%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSED+LTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVTEIILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 PGM IATLNDKGK+E ELVVERGRGYVPAVQNRA GAEIGRIPVDSIYSPVLKVTYKVDA Sbjct: 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 LHQLGLSLKDSP SFDPSEVAGYDV TGTWST+GAYD QDYAETEQL Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347 >sp|A0PMB7|RPOA_MYCUA Tax_Id=362242 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Mycobacterium ulcerans] Length = 347 Score = 654 bits (1686), Expect = 0.0 Identities = 332/347 (95%), Positives = 340/347 (97%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSE++LTD+RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P MRIATLNDKGK+E ELVVERGRGYVPAVQNRA GAEIGRIPVDSIYSPVLKVTYKVDA Sbjct: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETK+SITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 LHQLGLSLKDSP SFDPSEVAGYDV TGTWST+GAYD QDYAETEQL Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347 >tr|B2HCX4|B2HCX4_MYCMM Tax_Id=216594 (rpoA)SubName: Full=DNA-directed RNA polymerase (Alpha chain), RpoA;[Mycobacterium marinum] Length = 347 Score = 654 bits (1686), Expect = 0.0 Identities = 332/347 (95%), Positives = 340/347 (97%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSE++LTD+RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P MRIATLNDKGK+E ELVVERGRGYVPAVQNRA GAEIGRIPVDSIYSPVLKVTYKVDA Sbjct: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETK+SITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 LHQLGLSLKDSP SFDPSEVAGYDV TGTWST+GAYD QDYAETEQL Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347 >sp|Q73S43|RPOA_MYCPA Tax_Id=1770 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Mycobacterium paratuberculosis] Length = 347 Score = 648 bits (1672), Expect = 0.0 Identities = 330/347 (95%), Positives = 337/347 (97%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSE++LTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEEVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT IILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTAIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLNDKGK+E ELVVERGRGYVPAVQNRA GAEIGRIPVDSIYSPVLKVTYKVDA Sbjct: 121 PELHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 LHQLGLSLKDSP SFDPS+VAGYDV TGTWST+ AYD QDYAETEQL Sbjct: 301 LHQLGLSLKDSPPSFDPSQVAGYDVATGTWSTEAAYDDQDYAETEQL 347 >sp|A0QKU5|RPOA_MYCA1 Tax_Id=243243 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Mycobacterium avium] Length = 347 Score = 648 bits (1672), Expect = 0.0 Identities = 330/347 (95%), Positives = 337/347 (97%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSE++LTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEEVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT IILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTAIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLNDKGK+E ELVVERGRGYVPAVQNRA GAEIGRIPVDSIYSPVLKVTYKVDA Sbjct: 121 PELHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 LHQLGLSLKDSP SFDPS+VAGYDV TGTWST+ AYD QDYAETEQL Sbjct: 301 LHQLGLSLKDSPPSFDPSQVAGYDVATGTWSTEAAYDDQDYAETEQL 347 >sp|A1T520|RPOA_MYCVP Tax_Id=350058 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Mycobacterium vanbaalenii] Length = 350 Score = 632 bits (1630), Expect = e-179 Identities = 322/350 (92%), Positives = 335/350 (95%), Gaps = 3/350 (0%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSED+L +NRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEDVLAENRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P M IATLNDKGK+E ELVVERGRGYVPAVQN+A GAEIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PDMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETK+SITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 AD A FALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K Sbjct: 241 ADQAAHFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAY---DSQDYAETEQL 347 LHQLGLSLKDSP SFDPSEVAGYDV TGTW++D Y D+QDYAETEQL Sbjct: 301 LHQLGLSLKDSPASFDPSEVAGYDVATGTWNSDAGYDLEDNQDYAETEQL 350 >sp|Q1BD08|RPOA_MYCSS Tax_Id=164756 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Mycobacterium sp.] Length = 350 Score = 629 bits (1623), Expect = e-178 Identities = 320/350 (91%), Positives = 335/350 (95%), Gaps = 3/350 (0%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSE+ + DNRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEETVADNRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTDIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P M IATLNDKGK+E ELVVERGRGYVPAVQN+A GAEIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PEMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETK+SITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAY---DSQDYAETEQL 347 LHQLGLSLKDSP +FDPSEVAGYD TGTW++D Y D+QDYAETEQL Sbjct: 301 LHQLGLSLKDSPATFDPSEVAGYDAATGTWNSDAGYDLEDNQDYAETEQL 350 >sp|A1UBY5|RPOA_MYCSK Tax_Id=189918 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Mycobacterium sp.] Length = 350 Score = 629 bits (1623), Expect = e-178 Identities = 320/350 (91%), Positives = 335/350 (95%), Gaps = 3/350 (0%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSE+ + DNRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEETVADNRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTDIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P M IATLNDKGK+E ELVVERGRGYVPAVQN+A GAEIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PEMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETK+SITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAY---DSQDYAETEQL 347 LHQLGLSLKDSP +FDPSEVAGYD TGTW++D Y D+QDYAETEQL Sbjct: 301 LHQLGLSLKDSPATFDPSEVAGYDAATGTWNSDAGYDLEDNQDYAETEQL 350 >sp|A3PVL8|RPOA_MYCSJ Tax_Id=164757 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Mycobacterium sp.] Length = 350 Score = 629 bits (1623), Expect = e-178 Identities = 320/350 (91%), Positives = 335/350 (95%), Gaps = 3/350 (0%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSE+ + DNRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEETVADNRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTDIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P M IATLNDKGK+E ELVVERGRGYVPAVQN+A GAEIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PEMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETK+SITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAY---DSQDYAETEQL 347 LHQLGLSLKDSP +FDPSEVAGYD TGTW++D Y D+QDYAETEQL Sbjct: 301 LHQLGLSLKDSPATFDPSEVAGYDAATGTWNSDAGYDLEDNQDYAETEQL 350 >tr|A4TEJ3|A4TEJ3_MYCGI Tax_Id=350054 SubName: Full=DNA-directed RNA polymerase, alpha subunit; EC=2.7.7.6;[Mycobacterium gilvum] Length = 354 Score = 627 bits (1617), Expect = e-178 Identities = 319/354 (90%), Positives = 335/354 (94%), Gaps = 7/354 (1%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSE+++ +NRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEEVVAENRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P M IATLNDKGK+E ELVVERGRGYVPAVQN+A GAEIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PDMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETK+SI+PRDALASAGKTLVELFGLARELN+EAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNIEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 AD A FALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K Sbjct: 241 ADQAAHFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDS-------QDYAETEQL 347 LHQLGLSLKDSP SFDPSEVAGYDV TGTW++D YDS QDYAETEQL Sbjct: 301 LHQLGLSLKDSPASFDPSEVAGYDVATGTWNSDAGYDSGYEADDNQDYAETEQL 354 >tr|A4KLY1|A4KLY1_MYCTU Tax_Id=395095 SubName: Full=DNA-directed RNA polymerase (Alpha chain) rpoA;[Mycobacterium tuberculosis str. Haarlem] Length = 348 Score = 625 bits (1611), Expect = e-177 Identities = 316/332 (95%), Positives = 324/332 (97%) Query: 16 DNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTE 75 + RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTE Sbjct: 17 ETRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTE 76 Query: 76 IILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHNPGMRIATLNDKGKIE 135 IILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HNPGM IATLNDKGK+E Sbjct: 77 IILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHNPGMHIATLNDKGKLE 136 Query: 136 AELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDATRVEQRTDFDKLILD 195 ELVVERGRGYVPAVQNRA GAEIGRIPVDSIYSPVLKVTYKVDATRVEQRTDFDKLILD Sbjct: 137 VELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDATRVEQRTDFDKLILD 196 Query: 196 VETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAEADHIASFALPIDDLD 255 VETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAEADHIASFALPIDDLD Sbjct: 197 VETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAEADHIASFALPIDDLD 256 Query: 256 LTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVKLHQLGLSLKDSPDSF 315 LTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+KLHQLGLSLKDSP SF Sbjct: 257 LTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIKLHQLGLSLKDSPPSF 316 Query: 316 DPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 DPSEVAGYDV TGTWST+GAYD QDYAETEQL Sbjct: 317 DPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 348 >tr|B1MG99|B1MG99_MYCA9 Tax_Id=561007 SubName: Full=DNA-directed RNA polymerase alpha chain RpoA;[Mycobacterium abscessus] Length = 350 Score = 623 bits (1606), Expect = e-176 Identities = 317/350 (90%), Positives = 333/350 (95%), Gaps = 3/350 (0%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSE+ L +NRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEETLAENRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPG VTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTDIILNLKSLVVSSEEDEPVTMYLRKQGPGAVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P M IATLNDKGK+E ELVVERGRGYVPAVQN+A GAEIGRIPVDSIYSPVLKVTY V+A Sbjct: 121 PDMHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYNVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKL+LDVETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLVLDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPI+DLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K Sbjct: 241 ADHIASFALPIEDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYD---SQDYAETEQL 347 LHQLGLSLKDSP SFDPSEVAGYDV TGTWS G+YD QD+AETEQL Sbjct: 301 LHQLGLSLKDSPTSFDPSEVAGYDVATGTWSDTGSYDFDGDQDFAETEQL 350 >sp|A0QSL8|RPOA_MYCS2 Tax_Id=246196 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Mycobacterium smegmatis] Length = 350 Score = 613 bits (1582), Expect = e-174 Identities = 310/350 (88%), Positives = 332/350 (94%), Gaps = 3/350 (0%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSE+ + +NRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEETVAENRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLKGLVVSS++DEPVTMYLRKQGPG VTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTDIILNLKGLVVSSDDDEPVTMYLRKQGPGVVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P M IATLNDKGK+E ELVVERGRGYVPAVQN+A GAEIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PDMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLI+DVETK+SI+PRDALASAG TLVELFGLARELN ++E IEIGPSPAE Sbjct: 181 TRVEQRTDFDKLIIDVETKNSISPRDALASAGGTLVELFGLARELNADSEHIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAY---DSQDYAETEQL 347 LHQLGLSLKDSP +FDPSEVAGYD TGTW++D Y D+QDYAETEQL Sbjct: 301 LHQLGLSLKDSPATFDPSEVAGYDAATGTWTSDAGYDLDDNQDYAETEQL 350 >tr|D0L2F2|D0L2F2_9ACTO Tax_Id=526226 SubName: Full=DNA-directed RNA polymerase, alpha subunit;[Gordonia bronchialis DSM 43247] Length = 350 Score = 608 bits (1568), Expect = e-172 Identities = 307/350 (87%), Positives = 332/350 (94%), Gaps = 3/350 (0%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTL+E+IL DNRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAA+TSIRIDGVL Sbjct: 1 MLISQRPTLTEEILADNRSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAITSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLKGLVVSSEEDEPVTMY+RKQGPG VT DIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYVRKQGPGTVTGADIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLNDKGK+E ELVVERGRGYVPAVQN+A GAEIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+L+LDVETK+SI+ RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDRLVLDVETKNSISARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASF+LPI+DL+LTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVKVK Sbjct: 241 ADHIASFSLPIEDLELTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKVK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDS---QDYAETEQL 347 LH LGLSLKDSP SFDPS+VAGYD TGTWS D ++D+ +D+AETEQL Sbjct: 301 LHALGLSLKDSPASFDPSQVAGYDPATGTWSDDASFDADSGEDFAETEQL 350 >sp|Q5Z1K9|RPOA_NOCFA Tax_Id=37329 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Nocardia farcinica] Length = 352 Score = 607 bits (1564), Expect = e-172 Identities = 308/352 (87%), Positives = 327/352 (92%), Gaps = 5/352 (1%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTL+E+++ +NRS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLTEEVIAENRSKFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLKGLVVSSEEDEPVTMY+RKQGPG VTAGDIVPPAGV +HN Sbjct: 61 HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYVRKQGPGTVTAGDIVPPAGVVVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P M IATLNDKGK+E ELVVERGRGYVPAVQN+A GAEIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PDMHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+LILDVETK+SI+ RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDRLILDVETKNSISARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASF LPI+DLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVKVK Sbjct: 241 ADHIASFGLPIEDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKVK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYD-----SQDYAETEQL 347 LH LGLSLKDSP SFDPS V GYD +TGTWS G + QDYAETEQL Sbjct: 301 LHALGLSLKDSPASFDPSSVVGYDASTGTWSDSGTFSDNDGGEQDYAETEQL 352 >sp|Q0S3E7|RPOA_RHOSR Tax_Id=101510 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Rhodococcus sp.] Length = 353 Score = 603 bits (1556), Expect = e-171 Identities = 309/353 (87%), Positives = 330/353 (93%), Gaps = 6/353 (1%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTL+E+++ DNRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLTEEVIADNRSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLKGLVVSSEEDEPVTMY+RKQGPG VTAGDIVPPAGVT++N Sbjct: 61 HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYVRKQGPGAVTAGDIVPPAGVTVNN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLNDKGK+E ELVVERGRGYVPAVQN+A GAEIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+L+LDVETK+SIT RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDRLVLDVETKNSITARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASF LPI+DLDLTVRSYNCLKREGVHTVGELV RTESDLLDIRNFGQKSIDEVKVK Sbjct: 241 ADHIASFGLPIEDLDLTVRSYNCLKREGVHTVGELVGRTESDLLDIRNFGQKSIDEVKVK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWS-TDG-----AYDSQDYAETEQL 347 LH LGL+LKDSP SFDP+ VAGYD TGTWS TD A ++DYAETEQL Sbjct: 301 LHSLGLALKDSPASFDPTTVAGYDAATGTWSDTDAGSFGDAEGTEDYAETEQL 353 >tr|C1B041|C1B041_RHOOB Tax_Id=632772 (rpoA)SubName: Full=DNA-directed RNA polymerase alpha subunit; EC=2.7.7.6;[Rhodococcus opacus] Length = 353 Score = 603 bits (1556), Expect = e-171 Identities = 309/353 (87%), Positives = 330/353 (93%), Gaps = 6/353 (1%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTL+E+++ DNRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLTEEVIADNRSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLKGLVVSSEEDEPVTMY+RKQGPG VTAGDIVPPAGVT++N Sbjct: 61 HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYVRKQGPGAVTAGDIVPPAGVTVNN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLNDKGK+E ELVVERGRGYVPAVQN+A GAEIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+L+LDVETK+SIT RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDRLVLDVETKNSITARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASF LPI+DLDLTVRSYNCLKREGVHTVGELV RTESDLLDIRNFGQKSIDEVKVK Sbjct: 241 ADHIASFGLPIEDLDLTVRSYNCLKREGVHTVGELVGRTESDLLDIRNFGQKSIDEVKVK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWS-TDG-----AYDSQDYAETEQL 347 LH LGL+LKDSP SFDP+ VAGYD TGTWS TD A ++DYAETEQL Sbjct: 301 LHSLGLALKDSPASFDPTTVAGYDAATGTWSDTDAGSFGDAEGTEDYAETEQL 353 >tr|C0ZW54|C0ZW54_RHOE4 Tax_Id=234621 (rpoA)SubName: Full=DNA-directed RNA polymerase alpha chain; EC=2.7.7.6;[Rhodococcus erythropolis] Length = 353 Score = 603 bits (1556), Expect = e-171 Identities = 309/353 (87%), Positives = 330/353 (93%), Gaps = 6/353 (1%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTL+E+++ DNRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLTEEVIADNRSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLKGLVV+SEEDEPVTMY+RKQGPG VTAGDIVPPAGVT++N Sbjct: 61 HEFTTVPGVKEDVTDIILNLKGLVVNSEEDEPVTMYVRKQGPGAVTAGDIVPPAGVTVNN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLNDKGK+E ELVVERGRGYVPAVQN+A GAEIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+L+LDVETK+SIT RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDRLVLDVETKNSITARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASF LPI+DLDLTVRSYNCLKREGVHTVGELV RTESDLLDIRNFGQKSIDEVKVK Sbjct: 241 ADHIASFGLPIEDLDLTVRSYNCLKREGVHTVGELVGRTESDLLDIRNFGQKSIDEVKVK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWS-TDG-----AYDSQDYAETEQL 347 LH LGLSLKDSP SFDP+ VAGYD TGTWS TD A ++DYAETEQL Sbjct: 301 LHSLGLSLKDSPASFDPTTVAGYDAATGTWSDTDAGSFGDAEGTEDYAETEQL 353 >tr|C3JGZ6|C3JGZ6_RHOER Tax_Id=596309 (rpoA)SubName: Full=DNA-directed RNA polymerase, alpha subunit; EC=2.7.7.6;[Rhodococcus erythropolis SK121] Length = 353 Score = 603 bits (1556), Expect = e-171 Identities = 309/353 (87%), Positives = 330/353 (93%), Gaps = 6/353 (1%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTL+E+++ DNRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLTEEVIADNRSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLKGLVV+SEEDEPVTMY+RKQGPG VTAGDIVPPAGVT++N Sbjct: 61 HEFTTVPGVKEDVTDIILNLKGLVVNSEEDEPVTMYVRKQGPGAVTAGDIVPPAGVTVNN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLNDKGK+E ELVVERGRGYVPAVQN+A GAEIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+L+LDVETK+SIT RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDRLVLDVETKNSITARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIASF LPI+DLDLTVRSYNCLKREGVHTVGELV RTESDLLDIRNFGQKSIDEVKVK Sbjct: 241 ADHIASFGLPIEDLDLTVRSYNCLKREGVHTVGELVGRTESDLLDIRNFGQKSIDEVKVK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWS-TDG-----AYDSQDYAETEQL 347 LH LGLSLKDSP SFDP+ VAGYD TGTWS TD A ++DYAETEQL Sbjct: 301 LHSLGLSLKDSPASFDPTTVAGYDAATGTWSDTDAGSFGDAEGTEDYAETEQL 353 >tr|C2AM21|C2AM21_TSUPA Tax_Id=521096 SubName: Full=DNA-directed RNA polymerase subunit alpha; EC=2.7.7.6;[Tsukamurella paurometabola DSM 20162] Length = 352 Score = 601 bits (1549), Expect = e-170 Identities = 305/352 (86%), Positives = 330/352 (93%), Gaps = 5/352 (1%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSE++++D RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEEVISDARSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLKGLVVSSE+DEPVTMY+RKQGPG VTAGDIVPPA VT+HN Sbjct: 61 HEFTTVPGVKEDVTDIILNLKGLVVSSEDDEPVTMYVRKQGPGAVTAGDIVPPASVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLNDKGK+E ELVVERGRGYVPAVQN+A GAEIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+LILDVETK+S+T RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDRLILDVETKNSMTARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIA+F+LPI+DLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVKVK Sbjct: 241 ADHIAAFSLPIEDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKVK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYD-----SQDYAETEQL 347 LH LGL+LKDSP SFDPS+V GYD TGTWS + ++ QDYAETEQL Sbjct: 301 LHALGLALKDSPASFDPSQVDGYDPATGTWSDEPSFSGDADGDQDYAETEQL 352 >tr|C6WLZ6|C6WLZ6_ACTMD Tax_Id=446462 SubName: Full=DNA-directed RNA polymerase, alpha subunit;[Actinosynnema mirum] Length = 350 Score = 565 bits (1455), Expect = e-159 Identities = 291/351 (82%), Positives = 317/351 (90%), Gaps = 5/351 (1%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRP+LSE+ +++ RS+FVIEPLEPGFGYTLGNS+RRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPSLSEEAVSETRSRFVIEPLEPGFGYTLGNSIRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPG VTAGDIVPPAGVT+HN Sbjct: 61 HEFTTVPGVKEDVTDIILNLKELVVSSEEDEPVTMYLRKQGPGAVTAGDIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLN KGK+E ELVVERGRGYVPAVQN+ GAEIGRIPVDSIYSPV+KVTYKV+A Sbjct: 121 PDLHIATLNGKGKLEIELVVERGRGYVPAVQNKQAGAEIGRIPVDSIYSPVMKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVE+K SITPRDA+ASAGKTLVELFGLARELNV+AEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVESKPSITPRDAVASAGKTLVELFGLARELNVDAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 AD IA+FA+PI+DLDLTVRSYNCLKREG+HTVGELVSR+E+DLLDIRNFG KSIDEVK+K Sbjct: 241 ADTIAAFAMPIEDLDLTVRSYNCLKREGIHTVGELVSRSEADLLDIRNFGAKSIDEVKMK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDS----QDYAETEQL 347 L LGL+LKDSP FDPS A D W D + DS QDYAETEQL Sbjct: 301 LVGLGLALKDSPPGFDPSAAAS-DYPAEGWGADSSVDSHDDGQDYAETEQL 350 >sp|A4FPJ2|RPOA_SACEN Tax_Id=405948 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Saccharopolyspora erythraea] Length = 359 Score = 558 bits (1437), Expect = e-157 Identities = 288/360 (80%), Positives = 318/360 (88%), Gaps = 14/360 (3%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRP+L+E+ + + RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTS+RIDGVL Sbjct: 1 MLISQRPSLAEEAVAETRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSLRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTT+PGVKEDVT++ILNLK LVVSSEEDEPVTMYLRKQGPGEVTA DIVPPAGVT+HN Sbjct: 61 HEFTTIPGVKEDVTDVILNLKELVVSSEEDEPVTMYLRKQGPGEVTAADIVPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLN KGK+E ELVVERGRGYVPAVQN+ GAEIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PDLHIATLNGKGKLEIELVVERGRGYVPAVQNKQTGAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLILDVETK SITPRDA+ASAG+TLVELFGLARELNV+AEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLILDVETKPSITPRDAVASAGRTLVELFGLARELNVDAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 AD IA++A+PI+DLDLTVRSYNCLKREG+HTVGELVSR+E+DLLDIRNFG KSIDEVK+K Sbjct: 241 ADTIAAYAMPIEDLDLTVRSYNCLKREGIHTVGELVSRSEADLLDIRNFGAKSIDEVKLK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTD-------------GAYDSQDYAETEQL 347 L LGLSLKDSP FDPS A + G W+++ G D QDYAETEQL Sbjct: 301 LVGLGLSLKDSPPGFDPSAAAAEYPSEG-WASETETVGGLGRVEDNGYDDGQDYAETEQL 359 >tr|C7MTX5|C7MTX5_SACVD Tax_Id=471857 SubName: Full=DNA-directed RNA polymerase subunit alpha;[Saccharomonospora viridis] Length = 358 Score = 555 bits (1431), Expect = e-156 Identities = 287/358 (80%), Positives = 315/358 (87%), Gaps = 11/358 (3%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRPTLSE+ + + RS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLISQRPTLSEETVNETRSRFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEF+TVPGVKEDVTEIILNLK LVVSSEEDEPVTMYLRKQGPGEVTA DIVPP+GVT+HN Sbjct: 61 HEFSTVPGVKEDVTEIILNLKELVVSSEEDEPVTMYLRKQGPGEVTAADIVPPSGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IA+LN KGK+E ELVVERGRGYVPA+QN+ GAEIGRIP+DSIYSPVLKVTYKV+A Sbjct: 121 PDLHIASLNGKGKLEIELVVERGRGYVPALQNKQAGAEIGRIPIDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKL+LDVETK SITPRDA+ASAGKTLVELFGLARELNV+AEGIEIGPSP E Sbjct: 181 TRVEQRTDFDKLVLDVETKPSITPRDAVASAGKTLVELFGLARELNVDAEGIEIGPSPQE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 AD IA++A+PI+DLDLTVRSYNCLKREG+HTVGELVSR+E+DLLDIRNFG KSIDEVK+K Sbjct: 241 ADTIAAYAMPIEDLDLTVRSYNCLKREGIHTVGELVSRSEADLLDIRNFGAKSIDEVKMK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVA---GYDVTTGTWSTD--------GAYDSQDYAETEQL 347 L LGL+LKDSP FDP+ A G T+ TW G D QDYAETEQL Sbjct: 301 LAGLGLTLKDSPPGFDPTAAASTYGGAGTSQTWGAQPSTGLPDTGHDDGQDYAETEQL 358 >tr|C8XCL4|C8XCL4_NAKMY Tax_Id=479431 SubName: Full=DNA-directed RNA polymerase, alpha subunit;[Nakamurella multipartita] Length = 360 Score = 545 bits (1405), Expect = e-153 Identities = 278/362 (76%), Positives = 312/362 (86%), Gaps = 17/362 (4%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRP+L+E+ + DNRS+F+IEPLEPGFGYTLGNSLRRTLLSSIPGA+VTSIR+DGVL Sbjct: 1 MLISQRPSLTEEPVADNRSRFIIEPLEPGFGYTLGNSLRRTLLSSIPGASVTSIRVDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKED+TE+ILNLK LVVSSE+DEPVTMYLRKQGPG+VTA DI PPAGVT+HN Sbjct: 61 HEFTTVPGVKEDITELILNLKELVVSSEDDEPVTMYLRKQGPGDVTAADIAPPAGVTVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 +++ATL KGK+E ELVVERGRGYVPA N+ +GAEIGRIPVDSIYSPVLKVTY+V+A Sbjct: 121 SDLKLATLTKKGKLEIELVVERGRGYVPASPNKVVGAEIGRIPVDSIYSPVLKVTYRVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKL+LDVETK SITPRDALASAG TLVELFGLARELNV+AEGIEIGPSPAE Sbjct: 181 TRVEQRTDFDKLVLDVETKPSITPRDALASAGTTLVELFGLARELNVDAEGIEIGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ADHIA+F LPI+++DLTVRSYNCLKREG+HTVGELVSRTE+DLLDIRNFGQKSIDEVK+K Sbjct: 241 ADHIAAFGLPIEEMDLTVRSYNCLKREGIHTVGELVSRTEADLLDIRNFGQKSIDEVKIK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVA---------------GYDVTTGTWSTDGAYDSQDYAETE 345 L +GL+LKDSP FDP+ A GY G T D DYAETE Sbjct: 301 LAGMGLALKDSPAGFDPAAAALSYGDTDWNDDTDDSGYGSLAGLGGT--PQDDTDYAETE 358 Query: 346 QL 347 Q+ Sbjct: 359 QI 360 >tr|C0U7Z0|C0U7Z0_9ACTO Tax_Id=526225 SubName: Full=DNA-directed RNA polymerase subunit alpha; EC=2.7.7.6;[Geodermatophilus obscurus DSM 43160] Length = 358 Score = 527 bits (1357), Expect = e-148 Identities = 269/358 (75%), Positives = 304/358 (84%), Gaps = 11/358 (3%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLI+QRPTL+E+ +++ RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRI+G L Sbjct: 1 MLIAQRPTLTEETISEQRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIEGTL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVTEIILNLKGLVVSS+ DEPVTMYLRKQGPGEVTA DI PPAGV +HN Sbjct: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSDSDEPVTMYLRKQGPGEVTAADIAPPAGVEVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLN KG++E ELVVERGRGYVPA QN+ G EIGRIPVDSIYSPVLKVTY V+A Sbjct: 121 PELHIATLNGKGRLEIELVVERGRGYVPAPQNKQPGQEIGRIPVDSIYSPVLKVTYAVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+L++DVETK SI PRDA+ASAG TLVELFGL RELN++AEGIE+GPSPAE Sbjct: 181 TRVEQRTDFDRLVVDVETKPSIAPRDAIASAGSTLVELFGLLRELNIDAEGIEVGPSPAE 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 A IA+F++PI+D+DLTVRSYNCLKREGVHTVGELV+R+E+DLLDIRNFG KSIDEVK+K Sbjct: 241 AADIANFSMPIEDMDLTVRSYNCLKREGVHTVGELVTRSEADLLDIRNFGAKSIDEVKMK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDG-----------AYDSQDYAETEQL 347 L +GL+LKDSP F P+ V YD T + G YD Y ETEQL Sbjct: 301 LAAMGLALKDSPPGFIPTSVESYDEGYETDAYQGHGEFAAGYDQVQYDDGTYQETEQL 358 >tr|A3TH07|A3TH07_9MICO Tax_Id=313589 SubName: Full=DNA-directed RNA polymerase alpha subunit; EC=2.7.7.6;[Janibacter sp. HTCC2649] Length = 346 Score = 522 bits (1344), Expect = e-146 Identities = 266/347 (76%), Positives = 299/347 (86%), Gaps = 1/347 (0%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLI+QRP L+ED+++++RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLIAQRPILTEDVVSEHRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEF+T+PGVKEDVTEIILN+KGLVVSSE DEPV MYLRKQG G VTA DI PPAGV + N Sbjct: 61 HEFSTIPGVKEDVTEIILNIKGLVVSSEHDEPVVMYLRKQGSGAVTAADIAPPAGVEVIN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLNDKG IE EL VERGRGYV A QN++ EIGRIPVDSIYSPVL VTYKV+ Sbjct: 121 PDLHIATLNDKGSIEMELTVERGRGYVSAQQNKSGDQEIGRIPVDSIYSPVLNVTYKVEL 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDF+ L+LDVETK ++TPRDALASAGKTLVELFGLARELNVEAEGI++GPSP + Sbjct: 181 TRVEQRTDFNSLVLDVETKQAVTPRDALASAGKTLVELFGLARELNVEAEGIDMGPSPTD 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 A A ALPI+DLDLTVRSYNCLKREG+HTVGELV R+E+DLLDIRNFGQKSIDEVK K Sbjct: 241 AALAADLALPIEDLDLTVRSYNCLKREGIHTVGELVGRSEADLLDIRNFGQKSIDEVKAK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 LH +GL+LKDSP FDPS++A YD D A D+ +AE EQL Sbjct: 301 LHGMGLALKDSPAGFDPSQIASYDDEFSFADADDAEDA-SFAEDEQL 346 >tr|C0VBD5|C0VBD5_9MICO Tax_Id=446471 SubName: Full=DNA-directed RNA polymerase subunit alpha; EC=2.7.7.6;[Xylanimonas cellulosilytica DSM 15894] Length = 334 Score = 517 bits (1332), Expect = e-145 Identities = 266/339 (78%), Positives = 298/339 (87%), Gaps = 6/339 (1%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLI+QRPTL+E+++++NR++F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLIAQRPTLTEEVISENRTRFAIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVTEIILN+K LVVSSE DEPV MYLRKQG G VTA DIVPPAGV +HN Sbjct: 61 HEFTTVPGVKEDVTEIILNIKNLVVSSENDEPVVMYLRKQGAGAVTAADIVPPAGVEVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLNDKGK+E EL VERGRGYV A QN++L AEIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PDLHIATLNDKGKLEIELTVERGRGYVSAAQNKSLDAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLI+DVETK +ITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSP + Sbjct: 181 TRVEQRTDFDKLIVDVETKPAITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPTD 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 + A ALPI++L+LT+RSYNCLKREG+H VGELV+R+E+DLLDIRNFG KSI+EVK K Sbjct: 241 SALAADLALPIEELNLTIRSYNCLKREGIHQVGELVARSEADLLDIRNFGAKSINEVKEK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQ 339 L +LGL+LKDSP FDPS + YD D AYD Q Sbjct: 301 LAELGLALKDSPLDFDPS-ASFYD-----GGDDTAYDEQ 333 >tr|C7R162|C7R162_JONDD Tax_Id=471856 SubName: Full=DNA-directed RNA polymerase, alpha subunit;[Jonesia denitrificans] Length = 334 Score = 514 bits (1325), Expect = e-144 Identities = 260/323 (80%), Positives = 290/323 (89%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLI+QRPTLSE++++D RS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLIAQRPTLSEEVISDARSRFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEF+T+ GVKEDVTEIILN+K LV+SSE DEPV MYLRKQG G VTA DIVPPAGV +HN Sbjct: 61 HEFSTITGVKEDVTEIILNVKNLVLSSENDEPVVMYLRKQGAGVVTAADIVPPAGVEVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLNDKGK+E EL VERGRGYV A QN+++ AEIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PDLHIATLNDKGKLEIELTVERGRGYVSAQQNKSMDAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+LI+DVETKSSI PRDALASAGKTLVELFGLARELNVEAEGIEIGPSP + Sbjct: 181 TRVEQRTDFDRLIVDVETKSSIVPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPTD 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 A A ALPI+DL+LT+RSYNCLKREG+H VGELV+R+E+DLLDIRNFG KSI+EVK K Sbjct: 241 AALAADLALPIEDLNLTIRSYNCLKREGIHQVGELVARSEADLLDIRNFGAKSINEVKEK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGY 323 LH+LGLSLKDSP F PS + Y Sbjct: 301 LHELGLSLKDSPLDFQPSSESDY 323 >tr|C4ECV9|C4ECV9_STRRS Tax_Id=479432 SubName: Full=DNA-directed RNA polymerase subunit alpha; EC=2.7.7.6;[Streptosporangium roseum DSM 43021] Length = 357 Score = 514 bits (1324), Expect = e-144 Identities = 265/348 (76%), Positives = 295/348 (84%), Gaps = 13/348 (3%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLI+QRPTL E+ L + RS+F+IEPLEPGFGYT+GNSLRRTLLSSIPGAAVTSIRI+GVL Sbjct: 20 MLIAQRPTLLEESLEETRSKFIIEPLEPGFGYTIGNSLRRTLLSSIPGAAVTSIRIEGVL 79 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEF+TVPGVKEDVT+IILNLK LVVSSE DEPV MYLRKQGPGEVTA DI PPAGV +HN Sbjct: 80 HEFSTVPGVKEDVTDIILNLKELVVSSEHDEPVVMYLRKQGPGEVTAADIAPPAGVEVHN 139 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P +RIATLN K K+E EL VERGRGYV A QN+ G EIGRIP+DSIYSPVLKVTYKV+A Sbjct: 140 PELRIATLNGKAKLEMELTVERGRGYVSAAQNKQPGQEIGRIPIDSIYSPVLKVTYKVEA 199 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+LILDVETK + PRDA+ASAGKTLVELFGLARELNVEAEGI+IGPSP + Sbjct: 200 TRVEQRTDFDRLILDVETKPCMKPRDAVASAGKTLVELFGLARELNVEAEGIDIGPSPTD 259 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 A A ALPI++L+LTVRSYNCLKREG+HTVGELV+R+E DLLDIRNFG KSI+EVK K Sbjct: 260 AALAADLALPIEELNLTVRSYNCLKREGIHTVGELVARSEQDLLDIRNFGAKSIEEVKQK 319 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQD--YAETEQ 346 LH++ L+LKDSP FDPS VAG G YD D Y ETEQ Sbjct: 320 LHEMTLALKDSPPGFDPSAVAG-----------GGYDDDDSAYVETEQ 356 >tr|C9KDU8|C9KDU8_9MICO Tax_Id=446469 SubName: Full=DNA-directed RNA polymerase subunit alpha; EC=2.7.7.6;[Sanguibacter keddieii DSM 10542] Length = 334 Score = 514 bits (1323), Expect = e-144 Identities = 260/324 (80%), Positives = 290/324 (89%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLI+QRPTL+E++++++RS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLIAQRPTLTEEVISESRSRFSIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVTEIILN+K LVVSSE DEPV MYLRKQG G VTA DIVPPAGV +HN Sbjct: 61 HEFTTVPGVKEDVTEIILNVKNLVVSSENDEPVVMYLRKQGSGVVTAADIVPPAGVEVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLNDKGK+E EL VERGRGYV A QN++ AEIGR+PVDSIYSPVLKVTYKV+A Sbjct: 121 PDLHIATLNDKGKLEIELTVERGRGYVSAQQNKSFDAEIGRVPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLI+DVETK +I+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSP + Sbjct: 181 TRVEQRTDFDKLIVDVETKQAISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPTD 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 A A ALPI+DL LT+RSYNCLKREG+H VGELV+R+E+DLLDIRNFG KSI+EVK K Sbjct: 241 AALAADLALPIEDLQLTIRSYNCLKREGIHAVGELVARSEADLLDIRNFGAKSINEVKDK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYD 324 L +LGLSLKDSP FDP+ YD Sbjct: 301 LAELGLSLKDSPLDFDPTTADYYD 324 >tr|C7Q436|C7Q436_CATAD Tax_Id=479433 SubName: Full=DNA-directed RNA polymerase, alpha subunit;[Catenulispora acidiphila] Length = 341 Score = 513 bits (1320), Expect = e-143 Identities = 263/352 (74%), Positives = 299/352 (84%), Gaps = 16/352 (4%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLI+QRPTL+E+I+ + RS+F+IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLIAQRPTLTEEIIDEYRSRFLIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTT+PGVKEDVT++ILN+K LVVSSE DEPVTMYLRKQGPG VTA DI PPAGV +HN Sbjct: 61 HEFTTIPGVKEDVTDLILNIKQLVVSSEIDEPVTMYLRKQGPGTVTAADIAPPAGVEVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLN KGK+E EL VERGRGYV AVQN+ G EIGRIP+DSIYSPVLKV Y V+A Sbjct: 121 PELIIATLNGKGKLEMELTVERGRGYVSAVQNKQAGQEIGRIPIDSIYSPVLKVKYDVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+L+LDVETK S+ PRDA+ASAGKTLVELFGLARELN+EAEGI++GPSP + Sbjct: 181 TRVEQRTDFDRLVLDVETKQSMRPRDAVASAGKTLVELFGLARELNIEAEGIDMGPSPTD 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 A A ALPI+DL+LTVRSYNCLKREG+HTVGELV+R+E+DLLDIRNFG KSIDEVKVK Sbjct: 241 AALAADLALPIEDLELTVRSYNCLKREGIHTVGELVARSEADLLDIRNFGAKSIDEVKVK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQD-----YAETEQL 347 L +GL+LKDSP FDPS V D YD ++ YAETE+L Sbjct: 301 LMSMGLALKDSPPGFDPSLV-----------VDNQYDEEEDLDSGYAETEEL 341 >sp|Q2JFE8|RPOA_FRASC Tax_Id=106370 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Frankia sp.] Length = 349 Score = 511 bits (1317), Expect = e-143 Identities = 260/349 (74%), Positives = 300/349 (85%), Gaps = 4/349 (1%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLI+QRPTL ED +++ RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGA+VTSIRIDGVL Sbjct: 1 MLIAQRPTLIEDPISEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGASVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEF+TVPGVKEDVT++ILNLK LVVSS+ DEP MYLRKQGPGEVTA DI PPAGV +HN Sbjct: 61 HEFSTVPGVKEDVTDLILNLKELVVSSDNDEPTVMYLRKQGPGEVTAADIAPPAGVEVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P +R+ATLNDKGK+E EL VERGRGYV A QN+ G EIGRIP+DSIYSPVLKVTYKV+A Sbjct: 121 PELRLATLNDKGKLEIELTVERGRGYVSAAQNKQAGQEIGRIPIDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+LI+DVETK SI+PRDA+ASAGKTLV LFGLA+ELN EAEG++IGPS A+ Sbjct: 181 TRVEQRTDFDRLIVDVETKPSISPRDAMASAGKTLVGLFGLAQELNAEAEGVDIGPSAAD 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 A A ALPI+++DLTVRSYNCLKREG+HT+GELVSR+E+DLLDIRNFGQKSIDEVK K Sbjct: 241 AALAADLALPIEEMDLTVRSYNCLKREGIHTIGELVSRSEADLLDIRNFGQKSIDEVKTK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVA---GYDVTTGTWSTDGAYDSQDYAETEQ 346 L +GL LKDSP FDP + G D + ++S D + D ++ ETEQ Sbjct: 301 LGAMGLQLKDSPPGFDPRQAVDTYGTDAYSPSFS-DPSDDGAEFIETEQ 348 >sp|C5C0G1|RPOA_BEUC1 Tax_Id=471853 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Beutenbergia cavernae] Length = 338 Score = 511 bits (1316), Expect = e-143 Identities = 265/345 (76%), Positives = 295/345 (85%), Gaps = 9/345 (2%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLI+QRPTL+E+++ DNRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLIAQRPTLTEEVVADNRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVTEIILN+K +VVSSE DEPV MYLRKQGPG VTA DI PPAGV +HN Sbjct: 61 HEFTTVPGVKEDVTEIILNIKNIVVSSENDEPVVMYLRKQGPGVVTAADITPPAGVEVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IAT+N KGK+E EL VERGRGYV A QN+A EIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PDLHIATVNGKGKLEVELTVERGRGYVSAQQNKAYDTEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLI+DVE+K +I+PRDA+ASAGKTLVELFGLARELN AEGIEIGPSP + Sbjct: 181 TRVEQRTDFDKLIVDVESKPAISPRDAVASAGKTLVELFGLARELNTAAEGIEIGPSPTD 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 A A ALPI+DLDLT+RSYNCLKREG+H VGELV+R+E+DLLDIRNFG KSI EVK K Sbjct: 241 AALAADLALPIEDLDLTIRSYNCLKREGIHQVGELVARSEADLLDIRNFGAKSITEVKEK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETE 345 L LGLSLKDSP FDPS V T + DG D+ DYA+ + Sbjct: 301 LAALGLSLKDSPADFDPSLV--------TDAYDGDLDA-DYADEQ 336 >tr|C4LKZ1|C4LKZ1_CORK4 Tax_Id=645127 SubName: Full=DNA-directed RNA polymerase, alpha subunit; EC=2.7.7.6;[Corynebacterium kroppenstedtii] Length = 337 Score = 511 bits (1316), Expect = e-143 Identities = 258/344 (75%), Positives = 303/344 (88%), Gaps = 8/344 (2%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLISQRP L+E+ + +RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTS+RI+GVL Sbjct: 1 MLISQRPQLTEEYIDSSRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSVRIEGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGV EDV++IILN+KGLV+SS+ D+PVTMY+RK+GPGEVTAGDI+PPAGV +HN Sbjct: 61 HEFTTVPGVTEDVSDIILNIKGLVLSSDSDDPVTMYIRKEGPGEVTAGDIMPPAGVEIHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P M IATLN++GK++ ELVVERGRGYVPA Q A G EIGRIPVD IYSPVLKV+YKV+A Sbjct: 121 PDMHIATLNEQGKLDIELVVERGRGYVPAAQ--ATG-EIGRIPVDQIYSPVLKVSYKVEA 177 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+L++DVETK+SIT RDA+ASAG TLVELFGLARELN AEGIEIGPSP E Sbjct: 178 TRVEQRTDFDRLVIDVETKNSITARDAMASAGGTLVELFGLARELNTAAEGIEIGPSPQE 237 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 ++HI ++ +PI+DL+ +VRSYNCLKRE +HTVGEL SRTESDLLDIRNFGQKSI+EVKVK Sbjct: 238 SEHIQAYGMPIEDLNFSVRSYNCLKREEIHTVGELASRTESDLLDIRNFGQKSINEVKVK 297 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTW-STDGAYDSQDYAE 343 L LGL+LKD+P+ +D SE+ GYD TG W T+G +D AE Sbjct: 298 LAGLGLALKDAPEGYDVSEIEGYDAETGEWIDTEG----EDIAE 337 >sp|A0LRP8|RPOA_ACIC1 Tax_Id=351607 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Acidothermus cellulolyticus] Length = 341 Score = 511 bits (1315), Expect = e-143 Identities = 260/347 (74%), Positives = 298/347 (85%), Gaps = 6/347 (1%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLI+QRPT++E+ + D RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTS+RIDGVL Sbjct: 1 MLIAQRPTITEEPVHDTRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSLRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEF+TVPG KEDVTE+ILN+K LVVSSE D+P +YLRKQGP EVTA DIV PAGV +HN Sbjct: 61 HEFSTVPGAKEDVTEMILNIKELVVSSEHDDPQVIYLRKQGPCEVTAADIVAPAGVEVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + IATLNDKGK+E E+VVERGRGYVPA QN+ G EIGRIP+DSIYSPVLKVTYKV+A Sbjct: 121 PDLHIATLNDKGKLEIEMVVERGRGYVPAAQNKLPGHEIGRIPIDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+LI+DVETK S+ PRDA+ASAGKTLVELFGL RELNV+AEGI+IGPSP++ Sbjct: 181 TRVEQRTDFDRLIMDVETKPSMRPRDAMASAGKTLVELFGLVRELNVDAEGIDIGPSPSD 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 A A ALPI+DL+LTVRSYNCLKREG+HTVGELV+R+E+DLLDIRNFGQKSI+EVK K Sbjct: 241 AALAADLALPIEDLNLTVRSYNCLKREGIHTVGELVARSEADLLDIRNFGQKSIEEVKTK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347 L ++GLSLKDSP FDP V Y + + D Q Y ETEQL Sbjct: 301 LAEMGLSLKDSPPGFDPGRVV-YSASRSDYDED-----QRYIETEQL 341 >tr|A8LB05|A8LB05_FRASN Tax_Id=298653 SubName: Full=DNA-directed RNA polymerase, alpha subunit;[Frankia sp.] Length = 375 Score = 511 bits (1315), Expect = e-143 Identities = 258/349 (73%), Positives = 300/349 (85%), Gaps = 4/349 (1%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLI+QRP+L+ED +++ RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIR+DGVL Sbjct: 27 MLIAQRPSLAEDPISEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRVDGVL 86 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEF+TVPGVKEDVT++ILNLK LVVSS+ DEP MYLRKQGPGEVTA DI PPAGV +HN Sbjct: 87 HEFSTVPGVKEDVTDLILNLKELVVSSDNDEPTVMYLRKQGPGEVTAADIAPPAGVEVHN 146 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + +ATLNDKGK+E EL VERGRGYV A QN+ G EIGRIP+DSIYSPVLKVTYKV+A Sbjct: 147 PDLHLATLNDKGKLEIELTVERGRGYVSAAQNKQPGQEIGRIPIDSIYSPVLKVTYKVEA 206 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+LI+DVETK SI+PRDA+ASAGKTLV LFGLA+ELN EAEG++IGPS A+ Sbjct: 207 TRVEQRTDFDRLIVDVETKQSISPRDAMASAGKTLVGLFGLAQELNAEAEGVDIGPSAAD 266 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 A A ALPI+++DLTVRSYNCLKREG+HT+GELVSR+E+DLLDIRNFGQKSIDEVK K Sbjct: 267 AALAADLALPIEEMDLTVRSYNCLKREGIHTIGELVSRSEADLLDIRNFGQKSIDEVKTK 326 Query: 301 LHQLGLSLKDSPDSFDPSEVA---GYDVTTGTWSTDGAYDSQDYAETEQ 346 L +GL LKDSP FDP + G D ++S D + D +++ ETEQ Sbjct: 327 LGAMGLQLKDSPPGFDPRQAVDTYGTDTYNPSFS-DPSDDGREFVETEQ 374 >tr|C1WG44|C1WG44_9ACTO Tax_Id=479435 SubName: Full=DNA-directed RNA polymerase subunit alpha; EC=2.7.7.6;[Kribbella flavida DSM 17836] Length = 341 Score = 511 bits (1315), Expect = e-143 Identities = 254/346 (73%), Positives = 299/346 (86%), Gaps = 6/346 (1%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLI+QRPTL+E+++ ++RS+FVIEPLEPGFGYTLGNS+RRTLLSSIPGAAVTSI++DGVL Sbjct: 1 MLIAQRPTLTEEVVGEHRSRFVIEPLEPGFGYTLGNSIRRTLLSSIPGAAVTSIKVDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEF+TV GVKED T++ILNLK LVVSSE DEPVTMYLRKQGPG+VTA DI PPAGV +HN Sbjct: 61 HEFSTVAGVKEDATQLILNLKDLVVSSEHDEPVTMYLRKQGPGDVTAADIAPPAGVEVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P ++IATLN+KG++E ELVVERGRGYV A+QN++ AEIGR+PVDSIYSPVLKVTYKV+A Sbjct: 121 PDLKIATLNEKGRLEMELVVERGRGYVSAIQNKSADAEIGRMPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+L++DVETK S+ PRDA+ASAGKTLVELFGLARELNVEAEGI+IGPSP + Sbjct: 181 TRVEQRTDFDRLVVDVETKPSMLPRDAVASAGKTLVELFGLARELNVEAEGIDIGPSPVD 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 A ALP++DL LTVRSYNCLKREG+HTVGEL+SR+E DLLDIRNFG KSIDEVK+K Sbjct: 241 EQMAADLALPVEDLQLTVRSYNCLKREGIHTVGELISRSEQDLLDIRNFGSKSIDEVKLK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQ 346 L ++GLSLKDSP FD A + D + + +AETEQ Sbjct: 301 LAEMGLSLKDSPPGFDLRAAA------EAYGDDAEDEDESFAETEQ 340 >tr|C1RK25|C1RK25_9CELL Tax_Id=446466 SubName: Full=DNA-directed RNA polymerase subunit alpha; EC=2.7.7.6;[Cellulomonas flavigena DSM 20109] Length = 337 Score = 510 bits (1313), Expect = e-142 Identities = 259/339 (76%), Positives = 295/339 (87%), Gaps = 3/339 (0%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLI+QRPTL+E++++++RS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLIAQRPTLTEEVISEHRSRFSIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEF+T+PGVKEDVTEIILN+K LVVSSE DEPV MYLRKQG GEVT DIVPPAGV +HN Sbjct: 61 HEFSTIPGVKEDVTEIILNIKNLVVSSENDEPVVMYLRKQGAGEVTGADIVPPAGVEVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + +ATLN+KGK+E EL VERGRGYV A QN++ AEIGRIP+DSIYSPVLKVTYKV+A Sbjct: 121 PELHLATLNEKGKLEIELTVERGRGYVSANQNKSFDAEIGRIPIDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLI+DVE+K +I+PRDALASAG+TLVELFGLARELNVEAEGIEIGPSP + Sbjct: 181 TRVEQRTDFDKLIVDVESKPAISPRDALASAGRTLVELFGLARELNVEAEGIEIGPSPTD 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 A A ALPI+DL LT+RSYNCLKREG+H+VGELV+R+E+DLLDIRNFG KSI EVK K Sbjct: 241 AALAADLALPIEDLQLTIRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSITEVKEK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQ 339 L +LGL+LKDSP FDPS GY G TD D Q Sbjct: 301 LAELGLTLKDSPLDFDPSAAGGY---YGDDETDFVEDEQ 336 >sp|Q0RRP3|RPOA_FRAAA Tax_Id=326424 (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha; AltName: Full=RNA polymerase subunit alpha;[Frankia alni] Length = 349 Score = 509 bits (1311), Expect = e-142 Identities = 260/351 (74%), Positives = 299/351 (85%), Gaps = 8/351 (2%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLI+QRPTL ED +++ RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGA+VTSIRIDGVL Sbjct: 1 MLIAQRPTLVEDPISEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGASVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEF+TVPGVKEDVT++ILNLK LVVSS+ DEP MYLRKQGPGEVTA DI PPAGV +H+ Sbjct: 61 HEFSTVPGVKEDVTDLILNLKELVVSSDNDEPTVMYLRKQGPGEVTAADIAPPAGVEVHS 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P +R+ATLNDKGK+E EL VERGRGYV A QN+ G EIGRIP+DSIYSPVLKVTYKV+A Sbjct: 121 PELRLATLNDKGKLEIELTVERGRGYVSAAQNKQAGQEIGRIPIDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFD+LI+DVETK SI+PRDA+ASAGKTLV LFGLA+ELN EAEG++IGPS A+ Sbjct: 181 TRVEQRTDFDRLIVDVETKPSISPRDAMASAGKTLVGLFGLAQELNAEAEGVDIGPSAAD 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 A A ALPI+++DLTVRSYNCLKREG+HT+GELVSR+E+DLLDIRNFGQKSIDEVK K Sbjct: 241 AALAADLALPIEEMDLTVRSYNCLKREGIHTIGELVSRSEADLLDIRNFGQKSIDEVKTK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAY-----DSQDYAETEQ 346 L +GL LKDSP FDP + T GT S + A+ D ++ ETEQ Sbjct: 301 LGAMGLQLKDSPPGFDPRQAVD---TYGTDSYNPAFSDPSDDGAEFVETEQ 348 >tr|B5G8Q8|B5G8Q8_9ACTO Tax_Id=465543 SubName: Full=DNA-directed RNA polymerase subunit alpha;[Streptomyces sp. SPB74] Length = 340 Score = 506 bits (1302), Expect = e-141 Identities = 260/348 (74%), Positives = 297/348 (85%), Gaps = 11/348 (3%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLI+QRP+L+E+++ + RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL Sbjct: 1 MLIAQRPSLTEEVVDEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT++ILN+K LVVSSE DEPV MYLRKQGPG VTA DI PPAGV +HN Sbjct: 61 HEFTTVPGVKEDVTDLILNIKQLVVSSEHDEPVVMYLRKQGPGVVTAADIAPPAGVEVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + +ATLN KGK+E EL VERGRGYV AVQN+ G EIGRIPVDSIYSPVLKVTYKV+A Sbjct: 121 PDLVLATLNAKGKLELELTVERGRGYVSAVQNKQAGQEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLI+DVETK ++ PRDA+ASAGKTLVELFGLARELNV+AEGI++GPSP + Sbjct: 181 TRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNVDAEGIDMGPSPTD 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 A A ALPI++L+LTVRSYNCLKREG+H+VGELV+R+E+DLLDIRNFG KSIDEVK K Sbjct: 241 AALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQD--YAETEQ 346 L +GL+LKDSP FDP+ A T GA D D + ETEQ Sbjct: 301 LAGMGLALKDSPPGFDPTSAA---------DTFGADDDADAGFVETEQ 339 >tr|B4V4X3|B4V4X3_9ACTO Tax_Id=465541 SubName: Full=DNA-directed RNA polymerase alpha subunit;[Streptomyces sp. Mg1] Length = 340 Score = 505 bits (1301), Expect = e-141 Identities = 258/348 (74%), Positives = 297/348 (85%), Gaps = 11/348 (3%) Query: 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60 MLI+QRP+L+E+++ + RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIR+DGVL Sbjct: 1 MLIAQRPSLTEEVVDEYRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRVDGVL 60 Query: 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120 HEFTTVPGVKEDVT+IILN+K LVVSSE DEPV MYLRKQGPG VTA DI PPAGV +HN Sbjct: 61 HEFTTVPGVKEDVTDIILNIKQLVVSSEHDEPVVMYLRKQGPGLVTAADIAPPAGVEVHN 120 Query: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180 P + +ATLN KGK+E EL VERGRGYV AVQN+ LG EIGRIP+DSIYSPVLKVTYKV+A Sbjct: 121 PDLVLATLNGKGKLEMELTVERGRGYVSAVQNKQLGQEIGRIPIDSIYSPVLKVTYKVEA 180 Query: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240 TRVEQRTDFDKLI+DVETK ++ PRDA+ASAGKTLVELFGLARELN++AEGI++GPSP + Sbjct: 181 TRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMGPSPTD 240 Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300 A A ALPI++L+LTVRSYNCLKREG+H+VGELV+R+E+DLLDIRNFG KSIDEVK K Sbjct: 241 AALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAK 300 Query: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQD--YAETEQ 346 L +GL+LKDSP FDP+ A GA D D + ETEQ Sbjct: 301 LAGMGLALKDSPPGFDPTAAA---------DAFGADDDADAGFVETEQ 339 Database: Amellifera_nr Posted date: Jan 15, 2010 5:10 AM Number of letters in database: 3,808,957,724 Number of sequences in database: 11,153,314 Lambda K H 0.314 0.135 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11153314 Number of Hits to DB: 2,549,216,884 Number of extensions: 106586017 Number of successful extensions: 222689 Number of sequences better than 10.0: 3262 Number of HSP's gapped: 219594 Number of HSP's successfully gapped: 3397 Length of query: 347 Length of database: 3,808,957,724 Length adjustment: 138 Effective length of query: 209 Effective length of database: 2,269,800,392 Effective search space: 474388281928 Effective search space used: 474388281928 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 81 (35.8 bits)