BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_0219 (340 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0QNZ6|A0QNZ6_MYCS2 Tax_Id=246196 RecName: Full=RNA polymeras... 685 0.0 tr|A3PSR5|A3PSR5_MYCSJ Tax_Id=164757 RecName: Full=RNA polymeras... 505 e-141 tr|Q1BFS4|Q1BFS4_MYCSS Tax_Id=164756 RecName: Full=RNA polymeras... 504 e-141 tr|A1U958|A1U958_MYCSK Tax_Id=189918 RecName: Full=RNA polymeras... 504 e-141 tr|A4T3K9|A4T3K9_MYCGI Tax_Id=350054 RecName: Full=RNA polymeras... 495 e-138 tr|A1T1F0|A1T1F0_MYCVP Tax_Id=350058 RecName: Full=RNA polymeras... 488 e-136 tr|Q7U2M7|Q7U2M7_MYCBO Tax_Id=1765 (sigG)RecName: Full=RNA polym... 457 e-127 tr|O07426|O07426_MYCTU Tax_Id=1773 (sigG)RecName: Full=RNA polym... 457 e-127 tr|C6DRI7|C6DRI7_MYCTK Tax_Id=478434 RecName: Full=RNA polymeras... 457 e-127 tr|C1AJK7|C1AJK7_MYCBT Tax_Id=561275 (sigG)RecName: Full=RNA pol... 457 e-127 tr|A5WIN7|A5WIN7_MYCTF Tax_Id=336982 RecName: Full=RNA polymeras... 457 e-127 tr|A5TYQ7|A5TYQ7_MYCTA Tax_Id=419947 (sigG)RecName: Full=RNA pol... 457 e-127 tr|A1KF02|A1KF02_MYCBP Tax_Id=410289 (sigG)RecName: Full=RNA pol... 457 e-127 tr|D6G940|D6G940_MYCTU Tax_Id=478435 SubName: Full=Alternative R... 457 e-127 tr|D6FW82|D6FW82_MYCTU Tax_Id=611304 SubName: Full=Alternative R... 457 e-127 tr|D6FD14|D6FD14_MYCTU Tax_Id=611303 SubName: Full=Alternative R... 457 e-127 tr|D6F0C6|D6F0C6_MYCTU Tax_Id=611302 SubName: Full=RNA polymeras... 457 e-127 tr|D5ZBN3|D5ZBN3_MYCTU Tax_Id=537210 SubName: Full=Alternative R... 457 e-127 tr|D5Z9Y6|D5Z9Y6_MYCTU Tax_Id=537209 SubName: Full=Alternative R... 457 e-127 tr|D5YML8|D5YML8_MYCTU Tax_Id=520140 SubName: Full=RNA polymeras... 457 e-127 tr|A4KNK5|A4KNK5_MYCTU Tax_Id=395095 RecName: Full=RNA polymeras... 457 e-127 tr|A2VNA7|A2VNA7_MYCTU Tax_Id=348776 RecName: Full=RNA polymeras... 457 e-127 tr|D5YZ33|D5YZ33_MYCTU Tax_Id=515616 SubName: Full=Alternative R... 456 e-126 tr|D5YB26|D5YB26_MYCTU Tax_Id=520141 SubName: Full=RNA polymeras... 456 e-126 tr|D5XMZ6|D5XMZ6_MYCTU Tax_Id=515617 SubName: Full=Alternative R... 456 e-126 tr|Q73TU7|Q73TU7_MYCPA Tax_Id=1770 (sigG)RecName: Full=RNA polym... 450 e-124 tr|D5PAP8|D5PAP8_9MYCO Tax_Id=525368 (sigG2)SubName: Full=RNA po... 444 e-122 tr|A0QMI0|A0QMI0_MYCA1 Tax_Id=243243 RecName: Full=RNA polymeras... 441 e-122 tr|B2HMV4|B2HMV4_MYCMM Tax_Id=216594 (sigG)RecName: Full=RNA pol... 434 e-120 tr|A0PMU9|A0PMU9_MYCUA Tax_Id=362242 (sigG)RecName: Full=RNA pol... 432 e-119 tr|Q0S5P5|Q0S5P5_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,... 427 e-117 tr|B1MKX7|B1MKX7_MYCA9 Tax_Id=561007 RecName: Full=RNA polymeras... 423 e-116 tr|C1AWD1|C1AWD1_RHOOB Tax_Id=632772 (sigG)SubName: Full=RNA pol... 419 e-115 tr|C1A2E7|C1A2E7_RHOE4 Tax_Id=234621 (sigG)SubName: Full=Putativ... 408 e-112 tr|C3JTQ2|C3JTQ2_RHOER Tax_Id=596309 SubName: Full=RNA polymeras... 408 e-112 tr|D5PTD0|D5PTD0_COREQ Tax_Id=525370 SubName: Full=RNA polymeras... 406 e-111 tr|D1AD13|D1AD13_THECD Tax_Id=471852 RecName: Full=RNA polymeras... 372 e-101 tr|D5UGN7|D5UGN7_9CELL Tax_Id=446466 SubName: Full=RNA polymeras... 364 8e-99 tr|D0L6T7|D0L6T7_GORB4 Tax_Id=526226 RecName: Full=RNA polymeras... 363 1e-98 tr|C1YU74|C1YU74_NOCDA Tax_Id=446468 RecName: Full=RNA polymeras... 352 3e-95 tr|A1SQK3|A1SQK3_NOCSJ Tax_Id=196162 RecName: Full=RNA polymeras... 337 1e-90 tr|A8LWJ1|A8LWJ1_SALAI Tax_Id=391037 RecName: Full=RNA polymeras... 334 9e-90 tr|C7QBT1|C7QBT1_CATAD Tax_Id=479433 SubName: Full=RNA polymeras... 304 1e-80 tr|C7PWF0|C7PWF0_CATAD Tax_Id=479433 SubName: Full=RNA polymeras... 303 2e-80 tr|D2Q2S4|D2Q2S4_KRIFD Tax_Id=479435 RecName: Full=RNA polymeras... 299 3e-79 >tr|A0QNZ6|A0QNZ6_MYCS2 Tax_Id=246196 RecName: Full=RNA polymerase sigma factor;[Mycobacterium smegmatis] Length = 340 Score = 685 bits (1768), Expect = 0.0 Identities = 340/340 (100%), Positives = 340/340 (100%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETY 60 MSVILRKLTTVTVLAHKLDDDSPADAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETY Sbjct: 1 MSVILRKLTTVTVLAHKLDDDSPADAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETY 60 Query: 61 LRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHE 120 LRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHE Sbjct: 61 LRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHE 120 Query: 121 VPWLEPLPDGDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGE 180 VPWLEPLPDGDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGE Sbjct: 121 VPWLEPLPDGDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGE 180 Query: 181 AIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVE 240 AIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVE Sbjct: 181 AIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVE 240 Query: 241 LFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRE 300 LFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRE Sbjct: 241 LFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRE 300 Query: 301 TGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 TGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL Sbjct: 301 TGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 >tr|A3PSR5|A3PSR5_MYCSJ Tax_Id=164757 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 337 Score = 505 bits (1300), Expect = e-141 Identities = 251/340 (73%), Positives = 284/340 (83%), Gaps = 3/340 (0%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETY 60 MS I+RKL +VTVLA +DD DAFLA+AQ YRRELLAHCYRMTGSLHDAEDLVQETY Sbjct: 1 MSAIVRKLASVTVLARTVDDGPDEDAFLADAQKYRRELLAHCYRMTGSLHDAEDLVQETY 60 Query: 61 LRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHE 120 LRAWKSY+GFQG+SSVRTWLYRIATNT LT+L+GR+RRPLP+GLG PSS P D I E E Sbjct: 61 LRAWKSYKGFQGKSSVRTWLYRIATNTSLTALDGRARRPLPTGLGAPSSDPVDDIHERAE 120 Query: 121 VPWLEPLPDGDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGE 180 VPWL+PLPD D DPS IVG+RESVRLAF+AALQHLSPRQRAVLV+REVLQWKA+EV + Sbjct: 121 VPWLQPLPD--DAGDPSSIVGSRESVRLAFIAALQHLSPRQRAVLVLREVLQWKAAEVAD 178 Query: 181 AIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVE 240 A+G STAAVNSLLQRARAQL+A+GP+EDD + P+SP+A+ L RYIAAFE YD+DKL + Sbjct: 179 ALGTSTAAVNSLLQRARAQLDAIGPSEDDDLRPPESPEARDLLTRYIAAFETYDVDKLAD 238 Query: 241 LFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRE 300 LFT EA+WEMPPFD WYQGP I LS+ CPAE GDM+ + TTANGQ AAA+YM N Sbjct: 239 LFTAEAVWEMPPFDGWYQGPHDIVLLSKTHCPAERAGDMQLIPTTANGQTAAALYMRNPA 298 Query: 301 TGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 TGRHEAFQLHVLD+TADGISHVVAF F FGL +TL Sbjct: 299 TGRHEAFQLHVLDVTADGISHVVAFHAT-TFAPFGLADTL 337 >tr|Q1BFS4|Q1BFS4_MYCSS Tax_Id=164756 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 337 Score = 504 bits (1297), Expect = e-141 Identities = 250/340 (73%), Positives = 284/340 (83%), Gaps = 3/340 (0%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETY 60 MS I+RKL +VTVLA +DD DAFLA+AQ YRRELLAHCYRMTGSLHDAEDLVQETY Sbjct: 1 MSAIVRKLASVTVLARTVDDGPDEDAFLADAQKYRRELLAHCYRMTGSLHDAEDLVQETY 60 Query: 61 LRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHE 120 LRAWKSY+GFQG+SSVRTWLYRIATNT LT+L+GR+RRPLP+GLG PSS P D I E E Sbjct: 61 LRAWKSYKGFQGKSSVRTWLYRIATNTSLTALDGRARRPLPTGLGAPSSDPVDDIHERAE 120 Query: 121 VPWLEPLPDGDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGE 180 VPWL+PLPD D DPS IVG+RESVRLAF+AALQHLSPRQRAVLV+REVLQWKA+EV + Sbjct: 121 VPWLQPLPD--DAGDPSSIVGSRESVRLAFIAALQHLSPRQRAVLVLREVLQWKAAEVAD 178 Query: 181 AIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVE 240 A+G STAAVNSLLQRARAQL+A+GP+EDD + P+SP+A+ L RYIAAFE YD+D+L + Sbjct: 179 ALGTSTAAVNSLLQRARAQLDAIGPSEDDDLRPPESPEARDLLTRYIAAFETYDVDRLAD 238 Query: 241 LFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRE 300 LFT EA+WEMPPFD WYQGP I LS+ CPAE GDM+ + TTANGQ AAA+YM N Sbjct: 239 LFTAEAVWEMPPFDGWYQGPHDIVLLSKTHCPAERAGDMQLIPTTANGQTAAALYMRNPA 298 Query: 301 TGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 TGRHEAFQLHVLD+TADGISHVVAF F FGL +TL Sbjct: 299 TGRHEAFQLHVLDVTADGISHVVAFHAT-TFAPFGLADTL 337 >tr|A1U958|A1U958_MYCSK Tax_Id=189918 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 337 Score = 504 bits (1297), Expect = e-141 Identities = 250/340 (73%), Positives = 284/340 (83%), Gaps = 3/340 (0%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETY 60 MS I+RKL +VTVLA +DD DAFLA+AQ YRRELLAHCYRMTGSLHDAEDLVQETY Sbjct: 1 MSAIVRKLASVTVLARTVDDGPDEDAFLADAQKYRRELLAHCYRMTGSLHDAEDLVQETY 60 Query: 61 LRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHE 120 LRAWKSY+GFQG+SSVRTWLYRIATNT LT+L+GR+RRPLP+GLG PSS P D I E E Sbjct: 61 LRAWKSYKGFQGKSSVRTWLYRIATNTSLTALDGRARRPLPTGLGAPSSDPVDDIHERAE 120 Query: 121 VPWLEPLPDGDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGE 180 VPWL+PLPD D DPS IVG+RESVRLAF+AALQHLSPRQRAVLV+REVLQWKA+EV + Sbjct: 121 VPWLQPLPD--DAGDPSSIVGSRESVRLAFIAALQHLSPRQRAVLVLREVLQWKAAEVAD 178 Query: 181 AIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVE 240 A+G STAAVNSLLQRARAQL+A+GP+EDD + P+SP+A+ L RYIAAFE YD+D+L + Sbjct: 179 ALGTSTAAVNSLLQRARAQLDAIGPSEDDDLRPPESPEARDLLTRYIAAFETYDVDRLAD 238 Query: 241 LFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRE 300 LFT EA+WEMPPFD WYQGP I LS+ CPAE GDM+ + TTANGQ AAA+YM N Sbjct: 239 LFTAEAVWEMPPFDGWYQGPHDIVLLSKTHCPAERAGDMQLIPTTANGQTAAALYMRNPA 298 Query: 301 TGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 TGRHEAFQLHVLD+TADGISHVVAF F FGL +TL Sbjct: 299 TGRHEAFQLHVLDVTADGISHVVAFHAT-TFAPFGLADTL 337 >tr|A4T3K9|A4T3K9_MYCGI Tax_Id=350054 RecName: Full=RNA polymerase sigma factor;[Mycobacterium gilvum] Length = 340 Score = 495 bits (1275), Expect = e-138 Identities = 249/342 (72%), Positives = 281/342 (82%), Gaps = 4/342 (1%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETY 60 MS +RKL VTVLA LD+ DAFLA+AQ YRRELLAHCYRMTGSLHDAEDLVQETY Sbjct: 1 MSHPMRKLLFVTVLA--LDEGGAKDAFLADAQKYRRELLAHCYRMTGSLHDAEDLVQETY 58 Query: 61 LRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHE 120 LRAWKSY F+G+SSVRTWLYRIATNTCLT+L+GR RRPLPSGLG PS+ P +TE HE Sbjct: 59 LRAWKSYDRFEGKSSVRTWLYRIATNTCLTALDGRKRRPLPSGLGGPSADPYADLTERHE 118 Query: 121 VPWLEPLPDG--DDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEV 178 + WLEP+PD +DPADPS I +RESVRLA +AALQHLSPRQRAVLV+REVLQWKA+EV Sbjct: 119 IAWLEPIPDDPHEDPADPSVIAESRESVRLALIAALQHLSPRQRAVLVLREVLQWKAAEV 178 Query: 179 GEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKL 238 GE IGASTAAVNSLLQRARAQL+ V P+ DD+ +P+SPQA L +YIAAFE YD+D+L Sbjct: 179 GEVIGASTAAVNSLLQRARAQLDEVAPSRDDQPVSPESPQAAEALAKYIAAFEDYDMDRL 238 Query: 239 VELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLN 298 VELFT +A+WEMPPFD WY GP I LS+Y CPA GDMRFL+TTANGQP AA+YM N Sbjct: 239 VELFTADAVWEMPPFDGWYSGPADIIALSKYHCPAAGAGDMRFLRTTANGQPVAALYMRN 298 Query: 299 RETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 ET HEAFQLHVLD+ GI+HVVAFM LF+KFGLPETL Sbjct: 299 PETNVHEAFQLHVLDLRTRGIAHVVAFMDVSLFRKFGLPETL 340 >tr|A1T1F0|A1T1F0_MYCVP Tax_Id=350058 RecName: Full=RNA polymerase sigma factor;[Mycobacterium vanbaalenii] Length = 340 Score = 488 bits (1256), Expect = e-136 Identities = 244/342 (71%), Positives = 281/342 (82%), Gaps = 4/342 (1%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETY 60 MS +RKL VTV A LDD S DAFLA+AQ YRRELLAHCYRMTGSLHDAEDLVQETY Sbjct: 1 MSQPVRKLHFVTVTA--LDDSSAEDAFLADAQRYRRELLAHCYRMTGSLHDAEDLVQETY 58 Query: 61 LRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHE 120 LRAWKS++GFQG+SSVRTWLYRIATNTCLT+L+G RR LPSGLG P+S P ++ E Sbjct: 59 LRAWKSFKGFQGKSSVRTWLYRIATNTCLTALDGNKRRALPSGLGQPASDPAGELFVRPE 118 Query: 121 VPWLEPLPDG--DDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEV 178 V WLEPLPD +DP+DPS I +RESVRLAF+AALQHL PRQRAVLV+REVLQWKA+EV Sbjct: 119 VTWLEPLPDAPREDPSDPSVIAESRESVRLAFIAALQHLPPRQRAVLVLREVLQWKAAEV 178 Query: 179 GEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKL 238 GEA+G STAAVNSLLQRARAQL+ + P+ DD+ P+SP+A LD+YIAAFE YD+D+L Sbjct: 179 GEAVGTSTAAVNSLLQRARAQLDEISPSRDDEPVPPESPEAAELLDKYIAAFEDYDMDRL 238 Query: 239 VELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLN 298 VELFT++A+WEMPPFD WYQGP I LS+ +CPAE+ GDMRFL+TTANGQP AA+YM N Sbjct: 239 VELFTDDAVWEMPPFDGWYQGPANIVTLSKVQCPAEKAGDMRFLRTTANGQPVAALYMRN 298 Query: 299 RETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 ETG HEAFQLHVLD GI+HVVAF LF +FGLP+TL Sbjct: 299 PETGVHEAFQLHVLDAGKAGITHVVAFKENDLFARFGLPDTL 340 >tr|Q7U2M7|Q7U2M7_MYCBO Tax_Id=1765 (sigG)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 370 Score = 457 bits (1176), Expect = e-127 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|O07426|O07426_MYCTU Tax_Id=1773 (sigG)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 370 Score = 457 bits (1176), Expect = e-127 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|C6DRI7|C6DRI7_MYCTK Tax_Id=478434 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 370 Score = 457 bits (1176), Expect = e-127 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|C1AJK7|C1AJK7_MYCBT Tax_Id=561275 (sigG)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 370 Score = 457 bits (1176), Expect = e-127 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|A5WIN7|A5WIN7_MYCTF Tax_Id=336982 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 370 Score = 457 bits (1176), Expect = e-127 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|A5TYQ7|A5TYQ7_MYCTA Tax_Id=419947 (sigG)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 370 Score = 457 bits (1176), Expect = e-127 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|A1KF02|A1KF02_MYCBP Tax_Id=410289 (sigG)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 370 Score = 457 bits (1176), Expect = e-127 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|D6G940|D6G940_MYCTU Tax_Id=478435 SubName: Full=Alternative RNA polymerase sigma factor sigG;[Mycobacterium tuberculosis KZN 605] Length = 370 Score = 457 bits (1176), Expect = e-127 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|D6FW82|D6FW82_MYCTU Tax_Id=611304 SubName: Full=Alternative RNA polymerase sigma factor sigG;[Mycobacterium tuberculosis K85] Length = 370 Score = 457 bits (1176), Expect = e-127 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|D6FD14|D6FD14_MYCTU Tax_Id=611303 SubName: Full=Alternative RNA polymerase sigma factor sigG;[Mycobacterium tuberculosis CPHL_A] Length = 370 Score = 457 bits (1176), Expect = e-127 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|D6F0C6|D6F0C6_MYCTU Tax_Id=611302 SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium tuberculosis T46] Length = 370 Score = 457 bits (1176), Expect = e-127 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|D5ZBN3|D5ZBN3_MYCTU Tax_Id=537210 SubName: Full=Alternative RNA polymerase sigma factor sigG;[Mycobacterium tuberculosis T17] Length = 370 Score = 457 bits (1176), Expect = e-127 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|D5Z9Y6|D5Z9Y6_MYCTU Tax_Id=537209 SubName: Full=Alternative RNA polymerase sigma factor sigG;[Mycobacterium tuberculosis GM 1503] Length = 370 Score = 457 bits (1176), Expect = e-127 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|D5YML8|D5YML8_MYCTU Tax_Id=520140 SubName: Full=RNA polymerase factor sigma-70;[Mycobacterium tuberculosis EAS054] Length = 370 Score = 457 bits (1176), Expect = e-127 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|A4KNK5|A4KNK5_MYCTU Tax_Id=395095 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis str. Haarlem] Length = 370 Score = 457 bits (1176), Expect = e-127 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|A2VNA7|A2VNA7_MYCTU Tax_Id=348776 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis C] Length = 370 Score = 457 bits (1176), Expect = e-127 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|D5YZ33|D5YZ33_MYCTU Tax_Id=515616 SubName: Full=Alternative RNA polymerase sigma factor sigG;[Mycobacterium tuberculosis 02_1987] Length = 370 Score = 456 bits (1174), Expect = e-126 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTDWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGYVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|D5YB26|D5YB26_MYCTU Tax_Id=520141 SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium tuberculosis T85] Length = 370 Score = 456 bits (1174), Expect = e-126 Identities = 235/345 (68%), Positives = 272/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+VLQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTDWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGYVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|D5XMZ6|D5XMZ6_MYCTU Tax_Id=515617 SubName: Full=Alternative RNA polymerase sigma factor sigG;[Mycobacterium tuberculosis T92] Length = 370 Score = 456 bits (1172), Expect = e-126 Identities = 234/345 (67%), Positives = 271/345 (78%), Gaps = 8/345 (2%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPADA----FLAEAQTYRRELLAHCYRMTGSLHDAEDLV 56 +S LR+L V+VLA + PAD F A + YRRELLAHCYRMTGSLHDAEDLV Sbjct: 29 VSETLRRLIDVSVLAENSGRE-PADERRGDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87 Query: 57 QETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQIT 116 QET LRAWK+Y+GF G+SS+RTWL+RIATNTCLT+LEGR RRPLP+GLG PS+ P+ ++ Sbjct: 88 QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147 Query: 117 EHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKA 175 E EV WLEPLPD DDPADPS IVG RESVRLAFVAALQHLSPRQRAVL++R+ LQWK+ Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDALQWKS 207 Query: 176 SEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDI 235 +EV +AIG ST AVNSLLQRAR+QL+ V P+ D++ APDSP+AQ L RYIAAFEAYDI Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267 Query: 236 DKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMY 295 D+LVELFT EAIWEMPP+ WYQG QAI L +CPA PGDMR + ANGQPAAAMY Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327 Query: 296 MLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 M R H FQLHVLD+ AD +SHVVAF+ LF KFGLP++L Sbjct: 328 M--RAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370 >tr|Q73TU7|Q73TU7_MYCPA Tax_Id=1770 (sigG)RecName: Full=RNA polymerase sigma factor;[Mycobacterium paratuberculosis] Length = 366 Score = 450 bits (1157), Expect = e-124 Identities = 231/338 (68%), Positives = 266/338 (78%), Gaps = 4/338 (1%) Query: 5 LRKLTTVTVLAHKLDDDSPADA-FLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRA 63 LR L V++LA + DS A F A A+ YRRELLAHCYRMTGSLHDAEDLVQET LRA Sbjct: 22 LRTLMRVSLLAQTPEGDSVVGADFTAHAEPYRRELLAHCYRMTGSLHDAEDLVQETLLRA 81 Query: 64 WKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPW 123 WK+Y F+G+SSVRTWL+RIATNTCL++LEGR RRPLP GLG PS+ PT ++ E EVPW Sbjct: 82 WKAYDRFEGKSSVRTWLHRIATNTCLSALEGRQRRPLPVGLGAPSADPTAELVERREVPW 141 Query: 124 LEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAI 182 LEPLP DDPADPS IVG+RESVRLAFVAALQ+LSPRQRAVL++R+VL W+A+EV EAI Sbjct: 142 LEPLPALTDDPADPSVIVGSRESVRLAFVAALQYLSPRQRAVLLLRDVLGWRAAEVAEAI 201 Query: 183 GASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELF 242 G +TAAVNSLLQRARAQL+AVGP+ DD++ PDS + Q L RYIAAFE+YDID+LVELF Sbjct: 202 GTTTAAVNSLLQRARAQLDAVGPSADDQLAQPDSAETQDLLARYIAAFESYDIDRLVELF 261 Query: 243 TEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETG 302 T EAIWEMPP+ WYQG + I L +CPAE GDMR L ANGQPAAAMYM R Sbjct: 262 TAEAIWEMPPYTGWYQGARTIVTLIHQQCPAEGAGDMRLLPLIANGQPAAAMYM--RAGD 319 Query: 303 RHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 H FQLHVLD+ D +SHVVAF+ + LF KFGLP L Sbjct: 320 VHLPFQLHVLDVRGDRVSHVVAFLDDSLFAKFGLPAAL 357 >tr|D5PAP8|D5PAP8_9MYCO Tax_Id=525368 (sigG2)SubName: Full=RNA polymerase factor sigma-70; EC=2.7.7.6;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 335 Score = 444 bits (1141), Expect = e-122 Identities = 219/315 (69%), Positives = 257/315 (81%), Gaps = 3/315 (0%) Query: 27 FLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTWLYRIATN 86 F A A+ YRRELLAHCYRMTGSLHDAEDLVQET LRAW++Y F+G+SS+RTWL+RIATN Sbjct: 23 FSAHAEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWRAYDRFEGKSSMRTWLHRIATN 82 Query: 87 TCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEPLPD-GDDPADPSQIVGTRES 145 TCL++LEGR RRPLP+GLG PSS PT ++ E EVPWLEPLPD +DPADPS IVG+RES Sbjct: 83 TCLSALEGRQRRPLPTGLGAPSSDPTAELVERREVPWLEPLPDLANDPADPSVIVGSRES 142 Query: 146 VRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSLLQRARAQLEAVGP 205 VRLAFVAALQHLSPRQRAVL++R+VLQWKA+EV AIG +T AVNSLLQRAR+QL+A G Sbjct: 143 VRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAAAIGTTTTAVNSLLQRARSQLDAAGA 202 Query: 206 NEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPPFDSWYQGPQAIGD 265 + D++ AP+SP+A+ L RYIAAFEAYDI++LVELFT EAIWEMPP+ WY+G + I Sbjct: 203 DAGDRLAAPESPEARDLLARYIAAFEAYDIERLVELFTAEAIWEMPPYAGWYRGARDIVT 262 Query: 266 LSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHVLDITADGISHVVAF 325 L +CPAE PGDMR L ANGQP AAMYM R RH FQLHVLD+ DG+S VVAF Sbjct: 263 LIHQQCPAEHPGDMRLLPLVANGQPGAAMYM--RAGDRHVPFQLHVLDVRDDGVSRVVAF 320 Query: 326 MGEGLFKKFGLPETL 340 + + LF KFGLP +L Sbjct: 321 LDDALFAKFGLPGSL 335 >tr|A0QMI0|A0QMI0_MYCA1 Tax_Id=243243 RecName: Full=RNA polymerase sigma factor;[Mycobacterium avium] Length = 327 Score = 441 bits (1134), Expect = e-122 Identities = 222/315 (70%), Positives = 253/315 (80%), Gaps = 3/315 (0%) Query: 27 FLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTWLYRIATN 86 F A A+ YRRELLAHCYRMTGSLHDAEDLVQET LRAWK+Y F+G+SSVRTWL+RIATN Sbjct: 6 FTAHAEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYDRFEGKSSVRTWLHRIATN 65 Query: 87 TCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEPLPD-GDDPADPSQIVGTRES 145 TCL++LEGR RRPLP GLG PS+ PT ++ E EVPWLEPLP DDPADPS IVG+RES Sbjct: 66 TCLSALEGRQRRPLPVGLGAPSADPTAELVERREVPWLEPLPALSDDPADPSVIVGSRES 125 Query: 146 VRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSLLQRARAQLEAVGP 205 VRLAFVAALQ+LSPRQRAVL++R+VL W+A+EV EAIG +TAAVNSLLQRARAQL+AVGP Sbjct: 126 VRLAFVAALQYLSPRQRAVLLLRDVLGWRAAEVAEAIGTTTAAVNSLLQRARAQLDAVGP 185 Query: 206 NEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPPFDSWYQGPQAIGD 265 + DD+ PDS + Q L RYIAAFE+YDID+LVELFT EAIWEMPP+ WYQG + I Sbjct: 186 SADDQPAQPDSAETQDLLARYIAAFESYDIDRLVELFTAEAIWEMPPYTGWYQGARTIVT 245 Query: 266 LSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHVLDITADGISHVVAF 325 L +CPAE GDMR L ANGQPAAAMYM R H FQLHVLD+ D +SHVVAF Sbjct: 246 LIHQQCPAEGAGDMRLLPLIANGQPAAAMYM--RAGDVHLPFQLHVLDVRGDRVSHVVAF 303 Query: 326 MGEGLFKKFGLPETL 340 + + LF KFGLP L Sbjct: 304 LDDSLFAKFGLPAAL 318 >tr|B2HMV4|B2HMV4_MYCMM Tax_Id=216594 (sigG)RecName: Full=RNA polymerase sigma factor;[Mycobacterium marinum] Length = 343 Score = 434 bits (1116), Expect = e-120 Identities = 219/317 (69%), Positives = 249/317 (78%), Gaps = 3/317 (0%) Query: 25 DAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTWLYRIA 84 D F A+ YRRELLAHCYRMTGS+HDAEDLVQET LRAWKSY F+G+SS+RTWL+RIA Sbjct: 29 DEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIA 88 Query: 85 TNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEPLPD-GDDPADPSQIVGTR 143 TNTCL++LEGR RRPLP+GL S PT + E EVPWLEPLPD DPADPS IVG+R Sbjct: 89 TNTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEPLPDLMADPADPSVIVGSR 148 Query: 144 ESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSLLQRARAQLEAV 203 ESVRLAFVAALQHLSPRQRAVL++R+VLQWKA+EV EAIG +T AVNSLLQRARAQLE Sbjct: 149 ESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLETA 208 Query: 204 GPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPPFDSWYQGPQAI 263 P+ DD + APDSP+AQ L RYI AFEAYDID+LVE+FT EAIWEMPP+ WYQG + I Sbjct: 209 QPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARDI 268 Query: 264 GDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHVLDITADGISHVV 323 L +CPAE PGDMR + ANGQPAAAMYM ET H FQLHVLD+ +SHV Sbjct: 269 ITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGET--HVPFQLHVLDMVDGRVSHVT 326 Query: 324 AFMGEGLFKKFGLPETL 340 AF+ LF KFGLP ++ Sbjct: 327 AFLDGSLFPKFGLPASI 343 >tr|A0PMU9|A0PMU9_MYCUA Tax_Id=362242 (sigG)RecName: Full=RNA polymerase sigma factor;[Mycobacterium ulcerans] Length = 353 Score = 432 bits (1110), Expect = e-119 Identities = 226/355 (63%), Positives = 262/355 (73%), Gaps = 17/355 (4%) Query: 1 MSVILRKLTTVTVLAHKLDDDSPA--------------DAFLAEAQTYRRELLAHCYRMT 46 MS LR+L V+ LA +S A D F A+ YRRELLAHCYRMT Sbjct: 1 MSATLRRLIDVSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMT 60 Query: 47 GSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGT 106 GS+HDAEDLVQET LRAWKSY F+G+SS+RTWL+RIATNTC+++LEGR RRPLP+GL Sbjct: 61 GSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIATNTCMSALEGRQRRPLPTGLAA 120 Query: 107 PSSAPTDQITEHHEVPWLEPLPD-GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVL 165 S PT + E EVPWLEPLPD DPADPS IVG+RESVRLAFVAALQHLSPRQRAVL Sbjct: 121 SGSDPTAPLVERAEVPWLEPLPDLMADPADPSVIVGSRESVRLAFVAALQHLSPRQRAVL 180 Query: 166 VMREVLQWKASEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDR 225 ++R+VLQWKA+EV +AIG +T AVNSLLQRARAQLE V P+ DD + APDSP+AQ L R Sbjct: 181 LLRDVLQWKAAEVAQAIGTTTVAVNSLLQRARAQLETVQPSADDGLVAPDSPEAQDLLTR 240 Query: 226 YIAAFEAYDIDKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTT 285 YIAAFEA+DID+LVE+FT EAIWEMPP+ WYQG + I L +CPAE PGDMR + Sbjct: 241 YIAAFEAHDIDRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLV 300 Query: 286 ANGQPAAAMYMLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL 340 ANGQPAAAMYM ET F LHVLD+ +SHV AF+ LF KFGLP ++ Sbjct: 301 ANGQPAAAMYMRAGET--RVPFLLHVLDMVEGRVSHVTAFLDGSLFPKFGLPASI 353 >tr|Q0S5P5|Q0S5P5_RHOSR Tax_Id=101510 SubName: Full=Sigma factor, sigma 70 type, group 4 (ECF);[Rhodococcus sp.] Length = 327 Score = 427 bits (1097), Expect = e-117 Identities = 211/328 (64%), Positives = 251/328 (76%), Gaps = 10/328 (3%) Query: 15 AHKLDDDSPADAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRS 74 A LD D FLA A YRRELLAHCYRM GSLHDAED +QET++RAW+ Y G+Q ++ Sbjct: 4 AQSLDGD-----FLALADPYRRELLAHCYRMMGSLHDAEDQMQETFIRAWRGYDGYQQQA 58 Query: 75 SVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEPLPD---GD 131 S+RTWLY+IATNTCLT+L+ +S+RPLPSGLG P S PT + E HEVPWLEPLP+ D Sbjct: 59 SLRTWLYKIATNTCLTALQSKSKRPLPSGLGAPDSDPTADLVERHEVPWLEPLPNRLIDD 118 Query: 132 DPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNS 191 D DP+ +V +RESVRLAF+AALQHL RQRAVLV+R+VLQWKASEV A+G +T AVNS Sbjct: 119 DANDPATVVTSRESVRLAFIAALQHLPARQRAVLVLRDVLQWKASEVAAALGTTTTAVNS 178 Query: 192 LLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMP 251 LLQRARAQLE P D +E P+SP+ + LDRY+AAFE YDID +VELFT++A+WEMP Sbjct: 179 LLQRARAQLELATPTADTLVE-PESPEERDLLDRYVAAFENYDIDAIVELFTKDAVWEMP 237 Query: 252 PFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHV 311 PFD WY+G +IG L R CPA PGDMR + T ANGQPA +YM E G H FQLHV Sbjct: 238 PFDGWYRGGPSIGTLIRGNCPANAPGDMRLVPTAANGQPALGLYM-RGEDGVHRPFQLHV 296 Query: 312 LDITADGISHVVAFMGEGLFKKFGLPET 339 LD+TADG+SHVV F LF+KFGLP+T Sbjct: 297 LDVTADGVSHVVCFFDVDLFEKFGLPDT 324 >tr|B1MKX7|B1MKX7_MYCA9 Tax_Id=561007 RecName: Full=RNA polymerase sigma factor;[Mycobacterium abscessus] Length = 321 Score = 423 bits (1087), Expect = e-116 Identities = 206/326 (63%), Positives = 252/326 (77%), Gaps = 9/326 (2%) Query: 15 AHKLDDDSPADAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRS 74 AH ++D+ FL+ + YRRE+LAHCYRMTGS+HDAEDLVQETYLR WK+Y F+G+S Sbjct: 3 AHAIEDE-----FLSHTEQYRREILAHCYRMTGSIHDAEDLVQETYLRGWKAYARFEGKS 57 Query: 75 SVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEPLPDGDDPA 134 SVRTWLYRIATNTCLT+LEG+ RRPLP+GLG PS+ P D++ E E+PWLEPLP DD Sbjct: 58 SVRTWLYRIATNTCLTALEGKQRRPLPTGLGAPSADPLDELDERSEIPWLEPLP--DDAT 115 Query: 135 DPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSLLQ 194 DP+ IVG RESVRLAFVAALQHL +QRAVLV+REVLQWKA EV EAIG++TAAVNSLLQ Sbjct: 116 DPASIVGARESVRLAFVAALQHLPAKQRAVLVLREVLQWKAQEVAEAIGSTTAAVNSLLQ 175 Query: 195 RARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPPFD 254 RARAQL V P+E+ +E P+ P + L +YI AFE YD++ + ++FT EAIWEMPPF Sbjct: 176 RARAQLHEVSPHEETLLE-PEDPMLREQLRQYINAFERYDVEAIAKMFTTEAIWEMPPFT 234 Query: 255 SWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHVLDI 314 WYQG +I L + +CPAE GDMR ++T+ANGQPA +YM + G H FQ+HVLD+ Sbjct: 235 GWYQGGPSIAALIKEQCPAEHAGDMRLVETSANGQPAIGLYMREGD-GVHRPFQMHVLDV 293 Query: 315 TADGISHVVAFMGEGLFKKFGLPETL 340 T DG++HVV F LF+KFGLP L Sbjct: 294 TQDGVAHVVCFFDISLFEKFGLPAEL 319 >tr|C1AWD1|C1AWD1_RHOOB Tax_Id=632772 (sigG)SubName: Full=RNA polymerase ECF-type sigma factor SigG;[Rhodococcus opacus] Length = 327 Score = 419 bits (1077), Expect = e-115 Identities = 203/316 (64%), Positives = 248/316 (78%), Gaps = 5/316 (1%) Query: 27 FLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTWLYRIATN 86 FLA A YRRELLAHCYRM GSLHDAED +QET++RAW+ Y G+Q ++S+RTWLY+IATN Sbjct: 11 FLALADPYRRELLAHCYRMMGSLHDAEDQMQETFIRAWRGYDGYQQQASLRTWLYKIATN 70 Query: 87 TCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEPLPD---GDDPADPSQIVGTR 143 TCLT+L+ RS+RPLPSGLG P S PT ++ E HEVPWL PLP+ DD +DP+ +V +R Sbjct: 71 TCLTALQNRSKRPLPSGLGAPDSDPTAELVERHEVPWLGPLPNRLIDDDASDPATVVTSR 130 Query: 144 ESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSLLQRARAQLEAV 203 ESVRLAF+AALQHL RQRAVLV+R+VLQWKASEV A+G +T AVNSLLQRAR QLE Sbjct: 131 ESVRLAFIAALQHLPARQRAVLVLRDVLQWKASEVATALGTTTTAVNSLLQRARTQLELA 190 Query: 204 GPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPPFDSWYQGPQAI 263 P+ D +E P+SP+ + LDRY+AAFE YDID +VELFT++A+WEMPPF+ WY+G AI Sbjct: 191 TPSADTLVE-PESPEERELLDRYVAAFENYDIDGIVELFTKDAVWEMPPFEGWYRGGTAI 249 Query: 264 GDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHVLDITADGISHVV 323 G L KCPA+ GDM+ + T +NGQPA +YM E G H FQLHVLD+TA+G+SHVV Sbjct: 250 GTLISEKCPAKAAGDMQLVSTVSNGQPALGLYM-RGEDGVHRPFQLHVLDVTAEGVSHVV 308 Query: 324 AFMGEGLFKKFGLPET 339 F LF+KFGLPET Sbjct: 309 CFFDVDLFEKFGLPET 324 >tr|C1A2E7|C1A2E7_RHOE4 Tax_Id=234621 (sigG)SubName: Full=Putative RNA polymerase ECF-type sigma factor SigG;[Rhodococcus erythropolis] Length = 324 Score = 408 bits (1049), Expect = e-112 Identities = 201/316 (63%), Positives = 240/316 (75%), Gaps = 4/316 (1%) Query: 27 FLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTWLYRIATN 86 FL A YRRELLAHCYRM GS+HDAED VQET++RAW+ + G++G+SS+RTWLYRIATN Sbjct: 11 FLTLADPYRRELLAHCYRMMGSIHDAEDQVQETFIRAWRGFDGYKGQSSLRTWLYRIATN 70 Query: 87 TCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEPLPDG--DDPADPSQIVGTRE 144 TCLT+LEGRSRRPLP+GLG PSS P D + E +E+ WLEP+ D D DP+ +V R+ Sbjct: 71 TCLTALEGRSRRPLPTGLGAPSSDPADDLIERNEIAWLEPIADSALGDVNDPAVMVVNRD 130 Query: 145 SVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSLLQRARAQLEAVG 204 SVRLA VAALQHLS RQRAVLV+R+VLQWKASEV EA+ +T AVNSLLQRARAQ+ +G Sbjct: 131 SVRLALVAALQHLSARQRAVLVLRDVLQWKASEVAEALDTTTTAVNSLLQRARAQINHIG 190 Query: 205 PNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPPFDSWYQGPQAIG 264 P EDD +E P + A+ L Y+ +FE+YD++ +VELFT EAIWEMPPF+ WYQGP+AIG Sbjct: 191 PTEDDLVE-PSTEAARKLLRDYVHSFESYDVEAIVELFTREAIWEMPPFEGWYQGPEAIG 249 Query: 265 DLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHVLDITADGISHVVA 324 L KCPA+ PG MR L T ANGQPA +YM G H AFQLHVLD+T GISHV Sbjct: 250 QLIGTKCPADGPGAMRLLPTAANGQPAFGLYM-REPDGVHRAFQLHVLDVTESGISHVTC 308 Query: 325 FMGEGLFKKFGLPETL 340 F LF +FGLP L Sbjct: 309 FFDLSLFARFGLPAEL 324 >tr|C3JTQ2|C3JTQ2_RHOER Tax_Id=596309 SubName: Full=RNA polymerase sigma-70 factor family protein;[Rhodococcus erythropolis SK121] Length = 324 Score = 408 bits (1048), Expect = e-112 Identities = 201/316 (63%), Positives = 240/316 (75%), Gaps = 4/316 (1%) Query: 27 FLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTWLYRIATN 86 FL A YRRELLAHCYRM GS+HDAED VQET++RAW+ + G++G+SS+RTWLYRIATN Sbjct: 11 FLTLADPYRRELLAHCYRMMGSIHDAEDQVQETFIRAWRGFDGYKGQSSLRTWLYRIATN 70 Query: 87 TCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEPLPDG--DDPADPSQIVGTRE 144 TCLT+LEGRSRRPLP+GLG PSS P D + E +E+ WLEP+ D D DP+ +V R+ Sbjct: 71 TCLTALEGRSRRPLPTGLGAPSSDPADDLIERNEIAWLEPIADSALGDVNDPAVMVVNRD 130 Query: 145 SVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSLLQRARAQLEAVG 204 SVRLA VAALQHLS RQRAVLV+R+VLQWKASEV EA+ +T AVNSLLQRARAQ+ +G Sbjct: 131 SVRLALVAALQHLSARQRAVLVLRDVLQWKASEVAEALDTTTTAVNSLLQRARAQINHIG 190 Query: 205 PNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPPFDSWYQGPQAIG 264 P EDD +E P + A+ L Y+ +FE+YD++ +VELFT EAIWEMPPF+ WYQGP+AIG Sbjct: 191 PTEDDLVE-PTTEAARKLLRDYVHSFESYDVEAIVELFTREAIWEMPPFEGWYQGPEAIG 249 Query: 265 DLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHVLDITADGISHVVA 324 L KCPA+ PG MR L T ANGQPA +YM G H AFQLHVLD+T GISHV Sbjct: 250 QLIGTKCPADGPGAMRLLPTAANGQPAFGLYM-REPDGVHRAFQLHVLDVTESGISHVTC 308 Query: 325 FMGEGLFKKFGLPETL 340 F LF +FGLP L Sbjct: 309 FFDLSLFARFGLPAEL 324 >tr|D5PTD0|D5PTD0_COREQ Tax_Id=525370 SubName: Full=RNA polymerase factor sigma-70; EC=2.7.7.6;[Rhodococcus equi ATCC 33707] Length = 329 Score = 406 bits (1043), Expect = e-111 Identities = 206/328 (62%), Positives = 239/328 (72%), Gaps = 9/328 (2%) Query: 20 DDSPADAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTW 79 + S D FL A YRRELLAHCYRM GS+HDAEDL+QET +RAW+ Y F GRSSVRTW Sbjct: 4 EQSLDDQFLTAADPYRRELLAHCYRMMGSIHDAEDLLQETMVRAWRGYGKFDGRSSVRTW 63 Query: 80 LYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEPLPD-------GDD 132 L+RIATNTCLT+LEGR RRPLP+GLG PSSAP+D++ E EVPWLEP+PD G Sbjct: 64 LHRIATNTCLTALEGRERRPLPTGLGAPSSAPSDELIERREVPWLEPIPDSMVWGDSGWG 123 Query: 133 PADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSL 192 DP+ +V RESVRLAFVAALQHLS RQRAVLV+R+VLQWKA+EV EA+G STAAVNSL Sbjct: 124 ADDPATVVAARESVRLAFVAALQHLSARQRAVLVLRDVLQWKAAEVAEALGTSTAAVNSL 183 Query: 193 LQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPP 252 LQRARAQL PN D +E P S A+ L RY+ FE YDID LV+LFT++A+WEMPP Sbjct: 184 LQRARAQLSEATPNPDALVE-PGSDDARELLRRYVDGFERYDIDGLVDLFTQDAVWEMPP 242 Query: 253 FDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHVL 312 F WY G I L + KCP+E PGDMR L + NGQPA +YM G H FQLHVL Sbjct: 243 FVGWYVGGADIARLIKEKCPSEGPGDMRLLPASGNGQPALGLYM-REPDGVHRPFQLHVL 301 Query: 313 DITADGISHVVAFMGEGLFKKFGLPETL 340 DIT G++HV F LF++FGLP L Sbjct: 302 DITERGVAHVTCFFDVDLFERFGLPPQL 329 >tr|D1AD13|D1AD13_THECD Tax_Id=471852 RecName: Full=RNA polymerase sigma factor;[Thermomonospora curvata] Length = 332 Score = 372 bits (954), Expect = e-101 Identities = 183/324 (56%), Positives = 230/324 (70%), Gaps = 5/324 (1%) Query: 20 DDSPADAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTW 79 D + F A +RREL+AHCYRM GS+HDAEDLVQETYLRAW++Y F+GRS++RTW Sbjct: 6 DRPGVEEFARLADPFRRELMAHCYRMLGSVHDAEDLVQETYLRAWRAYDRFEGRSALRTW 65 Query: 80 LYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEPLPD---GDDPADP 136 LYRIAT CLT+LE R+RRP+P+GLG PS+ P + E EVPWLEP+PD G D ADP Sbjct: 66 LYRIATRACLTALESRARRPMPAGLGAPSADPAGDLVERPEVPWLEPVPDELVGADDADP 125 Query: 137 SQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSLLQRA 196 + +V +RES+RLAFVAALQHL PRQRAVL++REVL W+A+EV E +G STAAVNS+LQRA Sbjct: 126 AAVVVSRESIRLAFVAALQHLPPRQRAVLLLREVLGWRAAEVAETVGVSTAAVNSMLQRA 185 Query: 197 RAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPPFDSW 256 RA+L P D P + + LDRY+ AFEA D+ +V L T++A+WEMPPF +W Sbjct: 186 RARLRRAAPGRDG-TAGPLTAGQRDLLDRYVRAFEAKDVPAIVALLTDDAVWEMPPFPAW 244 Query: 257 YQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHVLDITA 316 Y+GP AIG ++CPA PG +R + ANGQPA A Y+ +R G + F L VL +T Sbjct: 245 YRGPAAIGHHLAHRCPA-GPGGLRIVPVAANGQPALAQYLRDRADGAYRPFNLQVLTLTG 303 Query: 317 DGISHVVAFMGEGLFKKFGLPETL 340 D +SHV F+ LF FGLP L Sbjct: 304 DRVSHVANFLDTALFAVFGLPPQL 327 >tr|D5UGN7|D5UGN7_9CELL Tax_Id=446466 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Cellulomonas flavigena DSM 20109] Length = 335 Score = 364 bits (935), Expect = 8e-99 Identities = 180/320 (56%), Positives = 225/320 (70%), Gaps = 8/320 (2%) Query: 25 DAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTWLYRIA 84 D F RRE+LAHCYRMTGS+HDAED++QETYLRAW++ +GF+ RSS+RTW++RIA Sbjct: 19 DQFEQRLAPMRREILAHCYRMTGSVHDAEDMLQETYLRAWRAMRGFENRSSLRTWVFRIA 78 Query: 85 TNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEPLPD----GDDPADPSQIV 140 TN CLT LEGR RRPLP+GLG P++ P + E H PWLEPLPD P DP++ Sbjct: 79 TNACLTHLEGRRRRPLPTGLGAPAADPRHEPREDHGTPWLEPLPDALVWAQPPVDPAETA 138 Query: 141 GTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSLLQRARAQL 200 R+SVRLAFVAALQHL+ +QRAVL++R+VL W A+EV +A+ S AA NS LQRARA + Sbjct: 139 VHRDSVRLAFVAALQHLTAQQRAVLLLRDVLAWSAAEVADALDLSVAAANSTLQRARAHM 198 Query: 201 EAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPPFDSWYQGP 260 V +D P P+ Q L RY+AAFEAYD+ +VEL + +WEMPPF WY GP Sbjct: 199 ANV---KDVTPLEPTDPRHQELLARYVAAFEAYDVAAIVELLATDVVWEMPPFPGWYAGP 255 Query: 261 QAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHVLDITADGIS 320 QA+G+L CPA+ PGDMR + T ANG PA A+YM E GRH AFQ+ + +TADG+ Sbjct: 256 QAVGELIGTWCPAQVPGDMRMVPTRANGLPAFALYMRGEE-GRHRAFQVQQVTVTADGVE 314 Query: 321 HVVAFMGEGLFKKFGLPETL 340 HV + GE LF +FGLP L Sbjct: 315 HVTVWFGEDLFTRFGLPVEL 334 >tr|D0L6T7|D0L6T7_GORB4 Tax_Id=526226 RecName: Full=RNA polymerase sigma factor;[Gordonia bronchialis] Length = 348 Score = 363 bits (933), Expect = 1e-98 Identities = 185/324 (57%), Positives = 229/324 (70%), Gaps = 14/324 (4%) Query: 27 FLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTWLYRIATN 86 FL + +RRE++AHCYRM GS HDAEDL Q+TYLRAW+ Y F RSSVRTWL++IATN Sbjct: 14 FLQVTEPFRREIVAHCYRMMGSHHDAEDLTQDTYLRAWRGYSKFDHRSSVRTWLHKIATN 73 Query: 87 TCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEP-------LPDGDDPADPSQI 139 TCLT+L+ R RRPLPSGLG + PTD + + HEVPWLEP + GDD ADP+ + Sbjct: 74 TCLTALQSRQRRPLPSGLGGDAFDPTDDLLQDHEVPWLEPFTGTVDDVSPGDD-ADPAYV 132 Query: 140 VGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSLLQRARAQ 199 VG RESVRLAF+AALQHL RQRAVL++R+VLQWKA+EV + +G +TA VNSLLQRAR Q Sbjct: 133 VGARESVRLAFIAALQHLPERQRAVLILRDVLQWKAAEVADTLGVTTATVNSLLQRAREQ 192 Query: 200 LEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPPFDSWYQG 259 L++ P ++ D Q +A L +Y++AFE YD+D +VELFT++AIWEMPPF WYQG Sbjct: 193 LKSSRPTQETSSTLDDEAQ-RALLAKYVSAFERYDVDAIVELFTDKAIWEMPPFTGWYQG 251 Query: 260 PQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHVLDITADG- 318 + IG L R CPAE PGD L ANGQPA +YM G H FQL VLD+ G Sbjct: 252 AEQIGTLIRRNCPAEGPGDQILLPAVANGQPAFGLYM-REPDGVHRPFQLQVLDLDPSGK 310 Query: 319 ISHVVAFMGEGL---FKKFGLPET 339 + +VVAF + + F +FGLP T Sbjct: 311 VQYVVAFFSDTMEEDFARFGLPAT 334 >tr|C1YU74|C1YU74_NOCDA Tax_Id=446468 RecName: Full=RNA polymerase sigma factor;[Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 330 Score = 352 bits (904), Expect = 3e-95 Identities = 182/333 (54%), Positives = 231/333 (69%), Gaps = 15/333 (4%) Query: 13 VLAHKLDDDSPADAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQG 72 V+ H D D F++ A YRREL AHCYRM GS+HDAEDLVQETYLRAWK+Y F+G Sbjct: 4 VVEHASDQD-----FMSAADPYRRELFAHCYRMLGSVHDAEDLVQETYLRAWKAYDRFEG 58 Query: 73 RSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEPLPD--- 129 RSS+RTWL+RIAT CLT+L+ R RRPLP+GLG P++ P ++ + E+PWLEP+PD Sbjct: 59 RSSLRTWLHRIATTACLTALDRRRRRPLPTGLGGPAAEPEGELADRPELPWLEPVPDALV 118 Query: 130 GDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAV 189 G D DP +V RESVRLA VAALQHL PRQRAVL++R+VL++ A+EV + +G S AV Sbjct: 119 GAD--DPGTVVAARESVRLALVAALQHLRPRQRAVLILRDVLRYSAAEVADTLGVSVPAV 176 Query: 190 NSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWE 249 NSLLQRARAQL V P E++ E P+ + LDRY+ AFE+YDI + E+FT +A++E Sbjct: 177 NSLLQRARAQLARVTPAEEEVAE--PRPEQREVLDRYVDAFESYDISAITEVFTADAVFE 234 Query: 250 MPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQL 309 MPPF +W +G IG L CPA PGDM + T ANGQPA A+YM + G H AF + Sbjct: 235 MPPFATWVRGAGHIGRLIAAHCPASGPGDMALVPTGANGQPAFALYMRGGD-GVHRAFGI 293 Query: 310 HVLDIT--ADGISHVVAFMGEGLFKKFGLPETL 340 VL++ D ++H V F LF+ FGLP L Sbjct: 294 QVLELAPGGDAVAHAVMFFDTSLFRHFGLPAVL 326 >tr|A1SQK3|A1SQK3_NOCSJ Tax_Id=196162 RecName: Full=RNA polymerase sigma factor;[Nocardioides sp.] Length = 365 Score = 337 bits (865), Expect = 1e-90 Identities = 173/309 (55%), Positives = 217/309 (70%), Gaps = 9/309 (2%) Query: 32 QTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLTS 91 Q Y+RELLAHCYRM+GS+ +AEDLVQET+LRAWK+ FQGRSSVRTWLYRIATN CLT+ Sbjct: 38 QRYQRELLAHCYRMSGSVQEAEDLVQETFLRAWKASADFQGRSSVRTWLYRIATNVCLTN 97 Query: 92 LEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEPLPDGDDPADPSQIVGTRESVRLAFV 151 LEGR RRPLP+GLGTP + D + E+HE+ WLEP+PD + +V R+S+RLAFV Sbjct: 98 LEGRPRRPLPAGLGTPDAMAGDALEENHEIAWLEPVPDA------AVVVAERDSIRLAFV 151 Query: 152 AALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSLLQRARAQLEAVGPNEDDKI 211 AALQHL RQRAVL++R+VL+W A+EV EA+ ++AAVNS LQRA AQL G E + + Sbjct: 152 AALQHLPARQRAVLILRDVLRWSAAEVAEALDTTSAAVNSALQRAHAQLAGRGLTE-ETV 210 Query: 212 EAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPPFDSWYQGPQAIGDLSRYKC 271 E +P Q L+RY+ AF D+D +V L T EA+WEMPPF +W+ GP IG+L C Sbjct: 211 EPDLTPAQQQLLERYVDAFWRKDVDAIVSLLTSEAVWEMPPFTNWFVGPDNIGELIDKHC 270 Query: 272 PAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHVLDITADGISHVVAFMGEGLF 331 P DM L+T+ANGQPA +YM G FQL VL++ ++HV AF LF Sbjct: 271 PGGW-NDMPMLRTSANGQPAFGLYM-RMADGGFTPFQLQVLELDGSRVAHVHAFFDTALF 328 Query: 332 KKFGLPETL 340 KFGLP+ L Sbjct: 329 AKFGLPDRL 337 >tr|A8LWJ1|A8LWJ1_SALAI Tax_Id=391037 RecName: Full=RNA polymerase sigma factor;[Salinispora arenicola] Length = 338 Score = 334 bits (857), Expect = 9e-90 Identities = 173/313 (55%), Positives = 212/313 (67%), Gaps = 6/313 (1%) Query: 31 AQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTWLYRIATNTCLT 90 A RRELL HCYRM GS+HDAEDLVQETYLRAW+SY GF+GRSS+RTWLYRIAT CL Sbjct: 15 AAPLRRELLVHCYRMLGSMHDAEDLVQETYLRAWRSYDGFEGRSSLRTWLYRIATTVCLR 74 Query: 91 SLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEPLPDG---DDPADPSQIVGTRESVR 147 ++E R RRPLP GLG P + P ++ E PWLEPLPD + DP+ IV R+SVR Sbjct: 75 AMENRGRRPLPVGLGAPGADPEERPIHDGETPWLEPLPDALLRREREDPAAIVSARQSVR 134 Query: 148 LAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSLLQRARAQLEAVGPNE 207 LAFVAALQHL PRQRAVL++R+VLQW+A EV + +G S AAVNSLLQRARA L + P E Sbjct: 135 LAFVAALQHLPPRQRAVLILRDVLQWRAVEVADLLGGSPAAVNSLLQRARATLGHLSPRE 194 Query: 208 DDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPPFDSWYQGPQAIGDLS 267 D++ P + + LDRY+ AFEA DI LV LF +A+WEMPP+ SWY+GP+ IG Sbjct: 195 -DRVTEPTTAAERELLDRYVTAFEAKDIAGLVRLFASDAVWEMPPYTSWYRGPRDIGRHL 253 Query: 268 RYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHVLDITADGISHVVAFMG 327 +C A PG +R + T ANGQPA A Y+ L VL +T+ I+ + F Sbjct: 254 ALRCLA-TPGPVRLVPTAANGQPALAGYVA-AGGSTFALTNLQVLSVTSTAITRITVFSD 311 Query: 328 EGLFKKFGLPETL 340 LF FGLP ++ Sbjct: 312 PRLFTAFGLPASV 324 >tr|C7QBT1|C7QBT1_CATAD Tax_Id=479433 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Catenulispora acidiphila] Length = 355 Score = 304 bits (778), Expect = 1e-80 Identities = 162/318 (50%), Positives = 207/318 (65%), Gaps = 7/318 (2%) Query: 25 DAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTWLYRIA 84 D F+ A YRRELL HCYRM GS+HDAEDLVQET+LRAW+ Y F+GRSS+R WLYRIA Sbjct: 28 DEFVRRADPYRRELLVHCYRMLGSVHDAEDLVQETFLRAWRGYDRFEGRSSLRIWLYRIA 87 Query: 85 TNTCLTSLEGRSRRPLPSGLGTPSSAPTDQI--TEHHEVPWLEPLPDGDDPADPSQIVGT 142 T+ CLT+LE RSRR LP+GLG P + EV WL+PLPD +DP+ IV Sbjct: 88 TSACLTALENRSRRVLPTGLGAPEKDAERPLLTVAGSEVQWLQPLPDA-LASDPAAIVAV 146 Query: 143 RESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSLLQRARAQLEA 202 R+SVRLAF+AALQHLS +QRAVL++R+V+ W A+EV + + +T AVNS L+RARAQLE Sbjct: 147 RDSVRLAFIAALQHLSAKQRAVLILRDVMDWHAAEVADLLDTTTIAVNSALRRARAQLEK 206 Query: 203 VGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPPFDSWYQGPQA 262 P+ D+ E PD P+ + L +Y AFE D+ L+ L ++ + EMPP +W+ G A Sbjct: 207 AAPSHDELTE-PDDPRRRDLLHQYTTAFENADVPGLLRLLRDDVVLEMPPNLAWFDGRTA 265 Query: 263 IGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHVLDITADGISHV 322 +G M + T ANGQ AAA Y+ R+ GR A + VL T+ GISH+ Sbjct: 266 VGTFLGANVLGRRAFTM--VTTAANGQAAAAGYLAGRD-GRRHAHAIQVLTATSSGISHI 322 Query: 323 VAFMGEGLFKKFGLPETL 340 V+F GLF FGLP L Sbjct: 323 VSFNDPGLFAAFGLPAVL 340 >tr|C7PWF0|C7PWF0_CATAD Tax_Id=479433 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Catenulispora acidiphila] Length = 351 Score = 303 bits (776), Expect = 2e-80 Identities = 168/324 (51%), Positives = 216/324 (66%), Gaps = 19/324 (5%) Query: 25 DAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTWLYRIA 84 D F+ + YRRELL HCYRM GS+HDAEDLVQETYLRAW+ Y F+GRSS+R WLYRIA Sbjct: 28 DEFVRLVEPYRRELLVHCYRMLGSVHDAEDLVQETYLRAWRGYDRFEGRSSLRIWLYRIA 87 Query: 85 TNTCLTSLEGRSRRPLPSGLGTPSS-----APTDQITEHHEVPWLEPLPD--GDDPADPS 137 T+ CLT+LE RSR+ LP+GLG P + PT EV WL+PLPD G+DPA Sbjct: 88 TSACLTALEHRSRKVLPTGLGGPDAEANRPGPTPGT---GEVEWLQPLPDLPGNDPA--- 141 Query: 138 QIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSLLQRAR 197 IV R+SVRLAF+AALQHLS +QRAVL++R+V+ W A+EV + + +T AVNS L+RAR Sbjct: 142 AIVAVRDSVRLAFIAALQHLSAKQRAVLILRDVMDWHAAEVADLLDTTTIAVNSALRRAR 201 Query: 198 AQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPPFDSWY 257 AQLE P+ DD++ PD P+ A L++Y AFE D+ LV L +E + EMPP W+ Sbjct: 202 AQLEKAAPS-DDELTEPDDPRRLAMLEQYTTAFENADVPGLVRLLRDEVVLEMPPNLFWF 260 Query: 258 QGPQAIGDLSRYKCPAEEPG-DMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHVLDITA 316 +G G+++R+ G L+ +ANGQPAAA Y+ + GR A +HVL +T Sbjct: 261 EGR---GNVTRFLDTRVLGGRPFAMLRISANGQPAAAGYLAGTD-GRWHAHAIHVLTMTV 316 Query: 317 DGISHVVAFMGEGLFKKFGLPETL 340 GISH+V+F LF FGLP L Sbjct: 317 TGISHIVSFNDPSLFDGFGLPAVL 340 >tr|D2Q2S4|D2Q2S4_KRIFD Tax_Id=479435 RecName: Full=RNA polymerase sigma factor;[Kribbella flavida] Length = 335 Score = 299 bits (766), Expect = 3e-79 Identities = 173/320 (54%), Positives = 213/320 (66%), Gaps = 10/320 (3%) Query: 26 AFLAE-AQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTWLYRIA 84 A LA+ A+ YRREL AHCYRMTGS+HDAEDLVQET+LRAW+ GF GRSS+RTWLYRIA Sbjct: 17 ALLADRAEGYRRELFAHCYRMTGSVHDAEDLVQETFLRAWRGSAGFDGRSSLRTWLYRIA 76 Query: 85 TNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEPLPDGDDPAD--PSQIVGT 142 TN CLT+L+ R RR LP+G G PS+ P + V W+EPLPD A+ P IV Sbjct: 77 TNACLTALDQRRRRFLPAGTGAPSNDPDEPPRPAESVAWVEPLPDALLRANETPESIVVE 136 Query: 143 RESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSLLQRARAQLEA 202 R+SVRLA VAALQ+L PRQRAVL++REVL W A+EV E +G S AAV SLLQRAR ++ Sbjct: 137 RDSVRLALVAALQYLQPRQRAVLLLREVLAWPAAEVAEVMGISVAAVKSLLQRARGRIAE 196 Query: 203 VGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPPFDSWYQGPQ- 261 + P +D+++ D PQAQ L RYI AFE D+ +L L E+A E+PP +W+QG Q Sbjct: 197 LEPEPEDRLQL-DDPQAQELLRRYITAFETADVAELGRLLCEDASIEVPPSTTWFQGIQV 255 Query: 262 AIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRE-TGRHEAFQLHVLDITADGIS 320 + L R+ E+ G R + T NGQPAAA Y +RE GR+ A + V +TA GIS Sbjct: 256 CLPYLGRH--VLEDVGTWRLVGTEVNGQPAAAAY--HREPDGRYTAAVVGVFTMTARGIS 311 Query: 321 HVVAFMGEGLFKKFGLPETL 340 VV F GL GLP L Sbjct: 312 RVVVFPDAGLTAAAGLPAAL 331 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.318 0.132 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 2,880,736,111 Number of extensions: 122695685 Number of successful extensions: 326373 Number of sequences better than 10.0: 7560 Number of HSP's gapped: 325313 Number of HSP's successfully gapped: 7619 Length of query: 340 Length of database: 4,236,830,644 Length adjustment: 138 Effective length of query: 202 Effective length of database: 2,510,745,412 Effective search space: 507170573224 Effective search space used: 507170573224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 81 (35.8 bits)