BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSMEG_0920
         (94 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           12,507,864 sequences; 4,236,830,644 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|A0QQY5|A0QQY5_MYCS2 Tax_Id=246196 SubName: Full=Putative unch...   105   2e-21
tr|Q1BEB9|Q1BEB9_MYCSS Tax_Id=164756 SubName: Full=Conserved mem...    97   8e-19
tr|A3PU71|A3PU71_MYCSJ Tax_Id=164757 SubName: Full=Putative unch...    97   8e-19
tr|A1UAL5|A1UAL5_MYCSK Tax_Id=189918 SubName: Full=Putative unch...    97   8e-19
tr|D5PBP1|D5PBP1_9MYCO Tax_Id=525368 SubName: Full=Transmembrane...    82   2e-14
tr|Q73SV4|Q73SV4_MYCPA Tax_Id=1770 SubName: Full=Putative unchar...    82   3e-14
tr|B2HQU1|B2HQU1_MYCMM Tax_Id=216594 SubName: Full=Conserved tra...    82   3e-14
tr|A0QLL4|A0QLL4_MYCA1 Tax_Id=243243 SubName: Full=Putative unch...    82   3e-14
sp|P64696|Y486_MYCBO Tax_Id=1765 RecName: Full=Uncharacterized p...    80   6e-14
sp|P64695|Y476_MYCTU Tax_Id=1773 RecName: Full=Uncharacterized p...    80   6e-14
tr|C6DT58|C6DT58_MYCTK Tax_Id=478434 SubName: Full=Conserved mem...    80   6e-14
tr|C1AKF4|C1AKF4_MYCBT Tax_Id=561275 SubName: Full=Putative tran...    80   6e-14
tr|A5WJI8|A5WJI8_MYCTF Tax_Id=336982 SubName: Full=Conserved tra...    80   6e-14
tr|A5TZK4|A5TZK4_MYCTA Tax_Id=419947 SubName: Full=Putative cons...    80   6e-14
tr|A1KFV0|A1KFV0_MYCBP Tax_Id=410289 SubName: Full=Possible cons...    80   6e-14
tr|D6FYY7|D6FYY7_MYCTU Tax_Id=478435 SubName: Full=Conserved mem...    80   6e-14
tr|D6FY84|D6FY84_MYCTU Tax_Id=611304 SubName: Full=Conserved mem...    80   6e-14
tr|D6FDX0|D6FDX0_MYCTU Tax_Id=611303 SubName: Full=Conserved mem...    80   6e-14
tr|D6F176|D6F176_MYCTU Tax_Id=611302 SubName: Full=Conserved mem...    80   6e-14
tr|D5ZCJ8|D5ZCJ8_MYCTU Tax_Id=537210 SubName: Full=Conserved mem...    80   6e-14
tr|D5Z051|D5Z051_MYCTU Tax_Id=537209 SubName: Full=Putative unch...    80   6e-14
tr|D5YNA9|D5YNA9_MYCTU Tax_Id=515616 SubName: Full=Transmembrane...    80   6e-14
tr|D5YCF7|D5YCF7_MYCTU Tax_Id=520140 SubName: Full=Transmembrane...    80   6e-14
tr|D5Y0E3|D5Y0E3_MYCTU Tax_Id=520141 SubName: Full=Transmembrane...    80   6e-14
tr|D5XQ92|D5XQ92_MYCTU Tax_Id=515617 SubName: Full=Conserved mem...    80   6e-14
tr|A4KEG5|A4KEG5_MYCTU Tax_Id=395095 SubName: Full=Conserved tra...    80   6e-14
tr|A2VFG2|A2VFG2_MYCTU Tax_Id=348776 SubName: Full=Putative unch...    80   6e-14
tr|A0PVY1|A0PVY1_MYCUA Tax_Id=362242 SubName: Full=Conserved tra...    80   8e-14
sp|Q9CB43|Y2453_MYCLE Tax_Id=1769 RecName: Full=Uncharacterized ...    79   2e-13
tr|B8ZT95|B8ZT95_MYCLB Tax_Id=561304 SubName: Full=Conserved mem...    79   2e-13
tr|A1T397|A1T397_MYCVP Tax_Id=350058 SubName: Full=Conserved mem...    77   7e-13
tr|A4T311|A4T311_MYCGI Tax_Id=350054 SubName: Full=Conserved mem...    76   2e-12
tr|Q5YP32|Q5YP32_NOCFA Tax_Id=37329 SubName: Full=Putative uncha...    55   2e-06
tr|B1MID4|B1MID4_MYCA9 Tax_Id=561007 SubName: Full=Putative unch...    54   8e-06
tr|C0ZUQ3|C0ZUQ3_RHOE4 Tax_Id=234621 SubName: Full=Putative unch...    49   3e-04
tr|C3JIK9|C3JIK9_RHOER Tax_Id=596309 SubName: Full=Putative unch...    49   3e-04
tr|A4FQ25|A4FQ25_SACEN Tax_Id=405948 SubName: Full=Putative unch...    47   6e-04
tr|D5PS45|D5PS45_COREQ Tax_Id=525370 SubName: Full=Transmembrane...    46   0.001
tr|C7MSX1|C7MSX1_SACVD Tax_Id=471857 SubName: Full=Putative unch...    45   0.003
tr|Q0SEX6|Q0SEX6_RHOSR Tax_Id=101510 SubName: Full=Putative unch...    45   0.004
tr|C1AZE1|C1AZE1_RHOOB Tax_Id=632772 SubName: Full=Hypothetical ...    45   0.004
tr|C7QKF3|C7QKF3_CATAD Tax_Id=479433 SubName: Full=Putative unch...    44   0.007
tr|C6WPL8|C6WPL8_ACTMD Tax_Id=446462 SubName: Full=Putative unch...    43   0.015
tr|A3TRK3|A3TRK3_9MICO Tax_Id=313589 SubName: Full=Putative unch...    41   0.042
tr|D0L2W6|D0L2W6_GORB4 Tax_Id=526226 SubName: Full=Putative unch...    39   0.16 

>tr|A0QQY5|A0QQY5_MYCS2 Tax_Id=246196 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium smegmatis]
          Length = 94

 Score =  105 bits (261), Expect = 2e-21
 Identities = 53/67 (79%), Positives = 53/67 (79%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGAAISACATGVYLVDVRPKLL 87
          HAAMQRPDAYTATGKLTKPVW              RDAFGAAISACATGVYLVDVRPKLL
Sbjct: 28 HAAMQRPDAYTATGKLTKPVWLIILGVGLLLLLLLRDAFGAAISACATGVYLVDVRPKLL 87

Query: 88 EIQGKSR 94
          EIQGKSR
Sbjct: 88 EIQGKSR 94


>tr|Q1BEB9|Q1BEB9_MYCSS Tax_Id=164756 SubName: Full=Conserved
          membrane protein; Flags: Precursor;[Mycobacterium sp.]
          Length = 94

 Score = 96.7 bits (239), Expect = 8e-19
 Identities = 47/67 (70%), Positives = 50/67 (74%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGAAISACATGVYLVDVRPKLL 87
          HAA+QRPDAYTA GKLTKPVW              RDAFGAA+ ACA GVYLVDVRPK+L
Sbjct: 28 HAAIQRPDAYTAAGKLTKPVWLAILGGGVLILLLFRDAFGAAVCACAAGVYLVDVRPKIL 87

Query: 88 EIQGKSR 94
          EIQGKSR
Sbjct: 88 EIQGKSR 94


>tr|A3PU71|A3PU71_MYCSJ Tax_Id=164757 SubName: Full=Putative
          uncharacterized protein; Flags:
          Precursor;[Mycobacterium sp.]
          Length = 94

 Score = 96.7 bits (239), Expect = 8e-19
 Identities = 47/67 (70%), Positives = 50/67 (74%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGAAISACATGVYLVDVRPKLL 87
          HAA+QRPDAYTA GKLTKPVW              RDAFGAA+ ACA GVYLVDVRPK+L
Sbjct: 28 HAAIQRPDAYTAAGKLTKPVWLAILGGGVLILLLFRDAFGAAVCACAAGVYLVDVRPKIL 87

Query: 88 EIQGKSR 94
          EIQGKSR
Sbjct: 88 EIQGKSR 94


>tr|A1UAL5|A1UAL5_MYCSK Tax_Id=189918 SubName: Full=Putative
          uncharacterized protein; Flags:
          Precursor;[Mycobacterium sp.]
          Length = 94

 Score = 96.7 bits (239), Expect = 8e-19
 Identities = 47/67 (70%), Positives = 50/67 (74%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGAAISACATGVYLVDVRPKLL 87
          HAA+QRPDAYTA GKLTKPVW              RDAFGAA+ ACA GVYLVDVRPK+L
Sbjct: 28 HAAIQRPDAYTAAGKLTKPVWLAILGGGVLILLLFRDAFGAAVCACAAGVYLVDVRPKIL 87

Query: 88 EIQGKSR 94
          EIQGKSR
Sbjct: 88 EIQGKSR 94


>tr|D5PBP1|D5PBP1_9MYCO Tax_Id=525368 SubName: Full=Transmembrane
          protein;[Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 91

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 44/70 (62%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                 FG    AI+ACA GVYLVDVRP
Sbjct: 22 HAALQRPDAYTAADKLTKPVWLVILGLAVALTSILSFVFGVLGMAIAACAAGVYLVDVRP 81

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 82 KLLEIQGKSR 91


>tr|Q73SV4|Q73SV4_MYCPA Tax_Id=1770 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium
          paratuberculosis]
          Length = 87

 Score = 81.6 bits (200), Expect = 3e-14
 Identities = 44/70 (62%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                 FG    AI+ACA GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLLILGGAVALTSVLGYVFGVLGMAIAACAAGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|B2HQU1|B2HQU1_MYCMM Tax_Id=216594 SubName: Full=Conserved
          transmembrane protein;[Mycobacterium marinum]
          Length = 95

 Score = 81.6 bits (200), Expect = 3e-14
 Identities = 44/70 (62%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                 FG    AI+ACA GVYLVDVRP
Sbjct: 26 HAALQRPDAYTAADKLTKPVWLVILGAAVALTSILGFVFGVLGMAIAACAAGVYLVDVRP 85

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 86 KLLEIQGKSR 95


>tr|A0QLL4|A0QLL4_MYCA1 Tax_Id=243243 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium avium]
          Length = 87

 Score = 81.6 bits (200), Expect = 3e-14
 Identities = 44/70 (62%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                 FG    AI+ACA GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLLILGGAVALTSVLGYVFGVLGMAIAACAAGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>sp|P64696|Y486_MYCBO Tax_Id=1765 RecName: Full=Uncharacterized
          protein Mb0486; Flags: Precursor;[Mycobacterium bovis]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>sp|P64695|Y476_MYCTU Tax_Id=1773 RecName: Full=Uncharacterized
          protein Rv0476/MT0494.1; Flags:
          Precursor;[Mycobacterium tuberculosis]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|C6DT58|C6DT58_MYCTK Tax_Id=478434 SubName: Full=Conserved
          membrane protein;[Mycobacterium tuberculosis]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|C1AKF4|C1AKF4_MYCBT Tax_Id=561275 SubName: Full=Putative
          transmembrane protein;[Mycobacterium bovis]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|A5WJI8|A5WJI8_MYCTF Tax_Id=336982 SubName: Full=Conserved
          transmembrane protein;[Mycobacterium tuberculosis]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|A5TZK4|A5TZK4_MYCTA Tax_Id=419947 SubName: Full=Putative
          conserved transmembrane protein;[Mycobacterium
          tuberculosis]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|A1KFV0|A1KFV0_MYCBP Tax_Id=410289 SubName: Full=Possible
          conserved transmembrane protein;[Mycobacterium bovis]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|D6FYY7|D6FYY7_MYCTU Tax_Id=478435 SubName: Full=Conserved
          membrane protein;[Mycobacterium tuberculosis KZN 605]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|D6FY84|D6FY84_MYCTU Tax_Id=611304 SubName: Full=Conserved
          membrane protein;[Mycobacterium tuberculosis K85]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|D6FDX0|D6FDX0_MYCTU Tax_Id=611303 SubName: Full=Conserved
          membrane protein;[Mycobacterium tuberculosis CPHL_A]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|D6F176|D6F176_MYCTU Tax_Id=611302 SubName: Full=Conserved
          membrane protein;[Mycobacterium tuberculosis T46]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|D5ZCJ8|D5ZCJ8_MYCTU Tax_Id=537210 SubName: Full=Conserved
          membrane protein;[Mycobacterium tuberculosis T17]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|D5Z051|D5Z051_MYCTU Tax_Id=537209 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium tuberculosis GM
          1503]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|D5YNA9|D5YNA9_MYCTU Tax_Id=515616 SubName: Full=Transmembrane
          protein;[Mycobacterium tuberculosis 02_1987]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|D5YCF7|D5YCF7_MYCTU Tax_Id=520140 SubName: Full=Transmembrane
          protein;[Mycobacterium tuberculosis EAS054]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|D5Y0E3|D5Y0E3_MYCTU Tax_Id=520141 SubName: Full=Transmembrane
          protein;[Mycobacterium tuberculosis T85]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|D5XQ92|D5XQ92_MYCTU Tax_Id=515617 SubName: Full=Conserved
          membrane protein;[Mycobacterium tuberculosis T92]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|A4KEG5|A4KEG5_MYCTU Tax_Id=395095 SubName: Full=Conserved
          transmembrane protein;[Mycobacterium tuberculosis str.
          Haarlem]
          Length = 87

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 78 KLLEIQGKSR 87


>tr|A2VFG2|A2VFG2_MYCTU Tax_Id=348776 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium tuberculosis C]
          Length = 95

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 43/70 (61%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                  G    A+SACA+GVYLVDVRP
Sbjct: 26 HAALQRPDAYTAADKLTKPVWLVILGAAVALASILYPVLGVLGMAMSACASGVYLVDVRP 85

Query: 85 KLLEIQGKSR 94
          KLLEIQGKSR
Sbjct: 86 KLLEIQGKSR 95


>tr|A0PVY1|A0PVY1_MYCUA Tax_Id=362242 SubName: Full=Conserved
          transmembrane protein;[Mycobacterium ulcerans]
          Length = 95

 Score = 80.1 bits (196), Expect = 8e-14
 Identities = 44/70 (62%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAAMQRPDAYTA  KLTKPVW                 FG    AI+ACA GVYLVDVRP
Sbjct: 26 HAAMQRPDAYTAADKLTKPVWLVILGAAVALTSILGFVFGVLGMAIAACAAGVYLVDVRP 85

Query: 85 KLLEIQGKSR 94
          KLLEIQ KSR
Sbjct: 86 KLLEIQDKSR 95


>sp|Q9CB43|Y2453_MYCLE Tax_Id=1769 RecName: Full=Uncharacterized
          protein ML2453; Flags: Precursor;[Mycobacterium leprae]
          Length = 87

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 42/70 (60%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                 FG     I+ACA GVYLVDVRP
Sbjct: 18 HAALQRPDAYTAAEKLTKPVWLVILGAAVSLTSILGFVFGVLGIVIAACAAGVYLVDVRP 77

Query: 85 KLLEIQGKSR 94
          KLL+IQGKSR
Sbjct: 78 KLLDIQGKSR 87


>tr|B8ZT95|B8ZT95_MYCLB Tax_Id=561304 SubName: Full=Conserved
          membrane protein;[Mycobacterium leprae]
          Length = 95

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 42/70 (60%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA---AISACATGVYLVDVRP 84
          HAA+QRPDAYTA  KLTKPVW                 FG     I+ACA GVYLVDVRP
Sbjct: 26 HAALQRPDAYTAAEKLTKPVWLVILGAAVSLTSILGFVFGVLGIVIAACAAGVYLVDVRP 85

Query: 85 KLLEIQGKSR 94
          KLL+IQGKSR
Sbjct: 86 KLLDIQGKSR 95


>tr|A1T397|A1T397_MYCVP Tax_Id=350058 SubName: Full=Conserved
          membrane protein; Flags: Precursor;[Mycobacterium
          vanbaalenii]
          Length = 93

 Score = 77.0 bits (188), Expect = 7e-13
 Identities = 42/67 (62%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGAAISACATGVYLVDVRPKLL 87
          HAAMQRPDAYTA  KLTKPVW                  G AI+A A GVYLVDVRPK+L
Sbjct: 28 HAAMQRPDAYTAADKLTKPVWLVILGVGVLLALVL-GITGVAIAAVAAGVYLVDVRPKIL 86

Query: 88 EIQGKSR 94
          EIQGKSR
Sbjct: 87 EIQGKSR 93


>tr|A4T311|A4T311_MYCGI Tax_Id=350054 SubName: Full=Conserved
           membrane protein; Flags: Precursor;[Mycobacterium
           gilvum]
          Length = 108

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 40/67 (59%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 28  HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGAAISACATGVYLVDVRPKLL 87
           HAAMQRPDAYTA  KLTKPVW                  G AI+A A GVY+VDVRPK+L
Sbjct: 43  HAAMQRPDAYTAADKLTKPVWLVILGVGVLLALVL-GITGVAIAAVAAGVYIVDVRPKIL 101

Query: 88  EIQGKSR 94
           E+QGKSR
Sbjct: 102 EVQGKSR 108


>tr|Q5YP32|Q5YP32_NOCFA Tax_Id=37329 SubName: Full=Putative
          uncharacterized protein;[Nocardia farcinica]
          Length = 95

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 29/65 (44%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFG--AAISACATGVYLVDVRPK 85
          HA  QRPDA+TA  K TKP+W                  G  A +S  ATG+YL DVRPK
Sbjct: 26 HAIRQRPDAFTAVDKQTKPIWLAILGVAVLLLLLSAGGLGLLAFVSIIATGIYLADVRPK 85

Query: 86 LLEIQ 90
          + E+Q
Sbjct: 86 VDEVQ 90


>tr|B1MID4|B1MID4_MYCA9 Tax_Id=561007 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium abscessus]
          Length = 92

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXR-DAFGAAISACATGVYLVDVRPKL 86
          HAA+Q  DA+ A  K TK  W                +   A I+A A GVY VDVRP++
Sbjct: 25 HAAIQPADAFVAAEKQTKTTWVVILAGAAVLTLIPGLELLTAGIAAVAAGVYFVDVRPRV 84

Query: 87 LEIQGKSR 94
          LE+QGKSR
Sbjct: 85 LEVQGKSR 92


>tr|C0ZUQ3|C0ZUQ3_RHOE4 Tax_Id=234621 SubName: Full=Putative
          uncharacterized protein;[Rhodococcus erythropolis]
          Length = 98

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 30/69 (43%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRD-AFGAAISACATGVYLVDVRPKL 86
          HA  QRPDA+TA  KLTKP+W                      I+  A  VYLVDVRP++
Sbjct: 29 HAVRQRPDAFTAVNKLTKPIWLGILIVAALILLATSPVGLLGIIAVVAVCVYLVDVRPRV 88

Query: 87 LEIQ-GKSR 94
           +IQ G SR
Sbjct: 89 DDIQHGGSR 97


>tr|C3JIK9|C3JIK9_RHOER Tax_Id=596309 SubName: Full=Putative
          uncharacterized protein;[Rhodococcus erythropolis
          SK121]
          Length = 98

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 30/69 (43%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRD-AFGAAISACATGVYLVDVRPKL 86
          HA  QRPDA+TA  KLTKP+W                      I+  A  VYLVDVRP++
Sbjct: 29 HAVRQRPDAFTAVNKLTKPIWLGILIVAALILLATSPVGLLGIIAVVAVCVYLVDVRPRV 88

Query: 87 LEIQ-GKSR 94
           +IQ G SR
Sbjct: 89 DDIQHGGSR 97


>tr|A4FQ25|A4FQ25_SACEN Tax_Id=405948 SubName: Full=Putative
          uncharacterized protein;[Saccharopolyspora erythraea]
          Length = 94

 Score = 47.4 bits (111), Expect = 6e-04
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGA--AISACATGVYLVDVRPK 85
          HAA+QR DA+TA  K+TKP W              R        I   A  VY+VDV+PK
Sbjct: 25 HAALQRADAFTAADKMTKPAWLGITGAGALVLILFRGPMTILWIIGMVAVLVYIVDVKPK 84

Query: 86 LLEIQ 90
          + E+Q
Sbjct: 85 VTEVQ 89


>tr|D5PS45|D5PS45_COREQ Tax_Id=525370 SubName: Full=Transmembrane
          protein;[Rhodococcus equi ATCC 33707]
          Length = 97

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 9/68 (13%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGAA-----ISACATGVYLVDV 82
          HAA QR DA+TA  KL+KP+W                 FGA      I+  A  VYLVDV
Sbjct: 29 HAARQRKDAFTAVDKLSKPIWLGILIASLLVVF----LFGAVHMLGIIAVVAICVYLVDV 84

Query: 83 RPKLLEIQ 90
          RP++ +IQ
Sbjct: 85 RPRVDDIQ 92


>tr|C7MSX1|C7MSX1_SACVD Tax_Id=471857 SubName: Full=Putative
          uncharacterized protein;[Saccharomonospora viridis]
          Length = 99

 Score = 45.1 bits (105), Expect = 0.003
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGAAI-----SACATGVYLVDV 82
          HA  QR DA+TA  +L+KP W              +  +GA +     +  A+ VY+VDV
Sbjct: 26 HAVTQRADAFTAADRLSKPAWMAITGGATVAMLLFQ-FYGAGMIFWLAALVASLVYIVDV 84

Query: 83 RPKLLEIQ 90
          RPKL+E+Q
Sbjct: 85 RPKLIEVQ 92


>tr|Q0SEX6|Q0SEX6_RHOSR Tax_Id=101510 SubName: Full=Putative
          uncharacterized protein;[Rhodococcus sp.]
          Length = 97

 Score = 44.7 bits (104), Expect = 0.004
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXR--DAFGAAISACATGVYLVDVRPK 85
          HAA QR DA+TA  KL+KP+W                   FG  ++  A  VYLVDVRP+
Sbjct: 29 HAARQRKDAFTAVDKLSKPIWLSILAVAFLVLLLFPAVQLFG-IVAVVAVCVYLVDVRPR 87

Query: 86 LLEIQ 90
          + ++Q
Sbjct: 88 VDDVQ 92


>tr|C1AZE1|C1AZE1_RHOOB Tax_Id=632772 SubName: Full=Hypothetical
          membrane protein;[Rhodococcus opacus]
          Length = 97

 Score = 44.7 bits (104), Expect = 0.004
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXR--DAFGAAISACATGVYLVDVRPK 85
          HAA QR DA+TA  KL+KP+W                   FG  ++  A  VYLVDVRP+
Sbjct: 29 HAARQRKDAFTAVDKLSKPIWLSILAVAFLVLLLFPAVQLFG-IVAVVAVCVYLVDVRPR 87

Query: 86 LLEIQ 90
          + ++Q
Sbjct: 88 VDDVQ 92


>tr|C7QKF3|C7QKF3_CATAD Tax_Id=479433 SubName: Full=Putative
          uncharacterized protein;[Catenulispora acidiphila]
          Length = 108

 Score = 43.9 bits (102), Expect = 0.007
 Identities = 27/66 (40%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 29 AAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGAAISACATGVYLVDVRPKLLE 88
          AA++R DAY A GKLTKP W                 F   I      VY VDVRP L E
Sbjct: 32 AALRREDAYRAAGKLTKPGWLIILTVAIAANMLLGLLF-TIIGVVVAMVYWVDVRPALKE 90

Query: 89 IQGKSR 94
          + G  R
Sbjct: 91 VSGSKR 96


>tr|C6WPL8|C6WPL8_ACTMD Tax_Id=446462 SubName: Full=Putative
           uncharacterized protein;[Actinosynnema mirum]
          Length = 107

 Score = 42.7 bits (99), Expect = 0.015
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 28  HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDAFGAA-----ISACATGVYLVDV 82
           HA  QR +AY A  ++TKP W                  GA      I   A  VYLVDV
Sbjct: 36  HAVTQRAEAYQAAERMTKPAWMGITGGGALALLLF-SLNGAGGMFWLIGVTAVSVYLVDV 94

Query: 83  RPKLLEIQ 90
           RP+L+E+Q
Sbjct: 95  RPRLIEVQ 102


>tr|A3TRK3|A3TRK3_9MICO Tax_Id=313589 SubName: Full=Putative
          uncharacterized protein;[Janibacter sp. HTCC2649]
          Length = 108

 Score = 41.2 bits (95), Expect = 0.042
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXRDA---FGAAISACATGVYLVDVRP 84
          HA   R DA+ A GK TK  W                    F   I+  A GVYL DVRP
Sbjct: 29 HALRTRADAFAAAGKRTKNFWLAVTGVAVLLGFVALGGAVLFLGMIAVAAAGVYLADVRP 88

Query: 85 KLLEIQGK 92
           +  +QGK
Sbjct: 89 AVESVQGK 96


>tr|D0L2W6|D0L2W6_GORB4 Tax_Id=526226 SubName: Full=Putative
          uncharacterized protein; Flags: Precursor;[Gordonia
          bronchialis]
          Length = 104

 Score = 39.3 bits (90), Expect = 0.16
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 28 HAAMQRPDAYTATGKLTKPVWXXXXXXXXXXXXXXR-DAFGAAISACATGVYLVDVRPKL 86
          HA++QR DA+ A  + +K VW              +  +    +   A  VYLVDVRP++
Sbjct: 33 HASIQRKDAFPAVDRQSKVVWVALLAGSTLFIWFFQAPSLLYLVGVVAMLVYLVDVRPRV 92

Query: 87 LEIQGKS 93
            IQGKS
Sbjct: 93 DSIQGKS 99


  Database: Amellifera_nr
    Posted date:  Jul 23, 2010  5:10 AM
  Number of letters in database: 4,236,830,644
  Number of sequences in database:  12,507,864
  
Lambda     K      H
   0.322    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 12507864
Number of Hits to DB: 397,378,359
Number of extensions: 7649186
Number of successful extensions: 8775
Number of sequences better than 10.0: 56
Number of HSP's gapped: 8745
Number of HSP's successfully gapped: 56
Length of query: 94
Length of database: 4,236,830,644
Length adjustment: 63
Effective length of query: 31
Effective length of database: 3,448,835,212
Effective search space: 106913891572
Effective search space used: 106913891572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 75 (33.5 bits)