BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_0944 (72 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0QR09|A0QR09_MYCS2 Tax_Id=246196 SubName: Full=DNA binding d... 145 2e-33 tr|Q1BE94|Q1BE94_MYCSS Tax_Id=164756 SubName: Full=Excisionase/X... 129 2e-28 tr|A3PU96|A3PU96_MYCSJ Tax_Id=164757 SubName: Full=DNA binding d... 129 2e-28 tr|A1UAP0|A1UAP0_MYCSK Tax_Id=189918 SubName: Full=DNA binding d... 129 2e-28 tr|A1T3C6|A1T3C6_MYCVP Tax_Id=350058 SubName: Full=DNA binding d... 127 4e-28 tr|D5PBS4|D5PBS4_9MYCO Tax_Id=525368 SubName: Full=Excisionase/X... 126 1e-27 tr|A4T338|A4T338_MYCGI Tax_Id=350054 SubName: Full=DNA binding d... 125 2e-27 tr|Q73ST1|Q73ST1_MYCPA Tax_Id=1770 SubName: Full=Putative unchar... 123 8e-27 tr|Q8VKK5|Q8VKK5_MYCTU Tax_Id=1773 SubName: Full=Excisionase, pu... 120 5e-26 tr|Q7U1W2|Q7U1W2_MYCBO Tax_Id=1765 SubName: Full=Putative unchar... 120 5e-26 tr|Q49828|Q49828_MYCLE Tax_Id=1769 SubName: Full=B2168_C1_172; S... 120 5e-26 tr|C6DT85|C6DT85_MYCTK Tax_Id=478434 SubName: Full=Putative unch... 120 5e-26 tr|C1AKI0|C1AKI0_MYCBT Tax_Id=561275 SubName: Full=Putative unch... 120 5e-26 tr|B8ZT78|B8ZT78_MYCLB Tax_Id=561304 SubName: Full=Possible DNA-... 120 5e-26 tr|A5WJL4|A5WJL4_MYCTF Tax_Id=336982 SubName: Full=Putative unch... 120 5e-26 tr|A5TZN0|A5TZN0_MYCTA Tax_Id=419947 SubName: Full=Putative unch... 120 5e-26 tr|A1KFX6|A1KFX6_MYCBP Tax_Id=410289 SubName: Full=Putative unch... 120 5e-26 tr|D6FZ13|D6FZ13_MYCTU Tax_Id=478435 SubName: Full=Putative unch... 120 5e-26 tr|D6FYB0|D6FYB0_MYCTU Tax_Id=611304 SubName: Full=Putative unch... 120 5e-26 tr|D6FDZ7|D6FDZ7_MYCTU Tax_Id=611303 SubName: Full=Putative unch... 120 5e-26 tr|D6F1A3|D6F1A3_MYCTU Tax_Id=611302 SubName: Full=Putative unch... 120 5e-26 tr|D5ZCM5|D5ZCM5_MYCTU Tax_Id=537210 SubName: Full=Putative unch... 120 5e-26 tr|D5Z078|D5Z078_MYCTU Tax_Id=537209 SubName: Full=Putative unch... 120 5e-26 tr|D5YNE3|D5YNE3_MYCTU Tax_Id=515616 SubName: Full=Putative unch... 120 5e-26 tr|D5YCI3|D5YCI3_MYCTU Tax_Id=520140 SubName: Full=Putative unch... 120 5e-26 tr|D5Y0G9|D5Y0G9_MYCTU Tax_Id=520141 SubName: Full=Putative unch... 120 5e-26 tr|D5XQC0|D5XQC0_MYCTU Tax_Id=515617 SubName: Full=Putative unch... 120 5e-26 tr|A2VFI5|A2VFI5_MYCTU Tax_Id=348776 SubName: Full=Putative unch... 120 5e-26 tr|B1MHJ7|B1MHJ7_MYCA9 Tax_Id=561007 SubName: Full=Putative unch... 118 3e-25 tr|Q0SF19|Q0SF19_RHOSR Tax_Id=101510 SubName: Full=Possible exci... 114 4e-24 tr|C1AZ50|C1AZ50_RHOOB Tax_Id=632772 SubName: Full=Putative unch... 114 4e-24 tr|D0L491|D0L491_GORB4 Tax_Id=526226 SubName: Full=DNA binding d... 113 9e-24 tr|C0ZUU7|C0ZUU7_RHOE4 Tax_Id=234621 SubName: Full=Putative unch... 113 9e-24 tr|B2HQW7|B2HQW7_MYCMM Tax_Id=216594 SubName: Full=Conserved pro... 113 9e-24 tr|A0PW05|A0PW05_MYCUA Tax_Id=362242 SubName: Full=Conserved pro... 113 9e-24 tr|C3JK13|C3JK13_RHOER Tax_Id=596309 SubName: Full=Putative unch... 113 9e-24 tr|Q5YP63|Q5YP63_NOCFA Tax_Id=37329 SubName: Full=Putative uncha... 108 3e-22 tr|D5UT11|D5UT11_TSUPA Tax_Id=521096 SubName: Full=DNA binding d... 106 8e-22 tr|D5PRY6|D5PRY6_COREQ Tax_Id=525370 SubName: Full=Excisionase/X... 106 1e-21 tr|C7MSZ7|C7MSZ7_SACVD Tax_Id=471857 SubName: Full=DNA-binding p... 95 2e-18 tr|A0QLJ2|A0QLJ2_MYCA1 Tax_Id=243243 SubName: Full=Conserved dom... 92 2e-17 tr|Q8NT97|Q8NT97_CORGL Tax_Id=1718 SubName: Full=Putative unchar... 91 5e-17 tr|Q6NJK6|Q6NJK6_CORDI Tax_Id=1717 SubName: Full=Putative DNA-bi... 91 5e-17 tr|A4QB51|A4QB51_CORGB Tax_Id=340322 SubName: Full=Putative unch... 91 5e-17 tr|Q6M7V2|Q6M7V2_CORGL Tax_Id=1718 SubName: Full=Extremely conse... 91 5e-17 >tr|A0QR09|A0QR09_MYCS2 Tax_Id=246196 SubName: Full=DNA binding domain, excisionase family protein;[Mycobacterium smegmatis] Length = 72 Score = 145 bits (365), Expect = 2e-33 Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 1 MNGPSARDAGDGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAV 60 MNGPSARDAGDGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAV Sbjct: 1 MNGPSARDAGDGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAV 60 Query: 61 HDLLETSYFDAG 72 HDLLETSYFDAG Sbjct: 61 HDLLETSYFDAG 72 >tr|Q1BE94|Q1BE94_MYCSS Tax_Id=164756 SubName: Full=Excisionase/Xis, DNA-binding protein;[Mycobacterium sp.] Length = 84 Score = 129 bits (323), Expect = 2e-28 Identities = 67/81 (82%), Positives = 70/81 (86%), Gaps = 9/81 (11%) Query: 1 MNGPSARDAGDG---------QPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGR 51 MNGPSARD+ G QPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGR Sbjct: 4 MNGPSARDSAGGKRESGADGQQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGR 63 Query: 52 SFRVHAKAVHDLLETSYFDAG 72 SFRVHAKAVHD+LE+SYFDAG Sbjct: 64 SFRVHAKAVHDMLESSYFDAG 84 >tr|A3PU96|A3PU96_MYCSJ Tax_Id=164757 SubName: Full=DNA binding domain, excisionase family;[Mycobacterium sp.] Length = 84 Score = 129 bits (323), Expect = 2e-28 Identities = 67/81 (82%), Positives = 70/81 (86%), Gaps = 9/81 (11%) Query: 1 MNGPSARDAGDG---------QPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGR 51 MNGPSARD+ G QPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGR Sbjct: 4 MNGPSARDSAGGKRESGADGQQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGR 63 Query: 52 SFRVHAKAVHDLLETSYFDAG 72 SFRVHAKAVHD+LE+SYFDAG Sbjct: 64 SFRVHAKAVHDMLESSYFDAG 84 >tr|A1UAP0|A1UAP0_MYCSK Tax_Id=189918 SubName: Full=DNA binding domain, excisionase family;[Mycobacterium sp.] Length = 84 Score = 129 bits (323), Expect = 2e-28 Identities = 67/81 (82%), Positives = 70/81 (86%), Gaps = 9/81 (11%) Query: 1 MNGPSARDAGDG---------QPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGR 51 MNGPSARD+ G QPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGR Sbjct: 4 MNGPSARDSAGGKRESGADGQQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGR 63 Query: 52 SFRVHAKAVHDLLETSYFDAG 72 SFRVHAKAVHD+LE+SYFDAG Sbjct: 64 SFRVHAKAVHDMLESSYFDAG 84 >tr|A1T3C6|A1T3C6_MYCVP Tax_Id=350058 SubName: Full=DNA binding domain, excisionase family;[Mycobacterium vanbaalenii] Length = 90 Score = 127 bits (319), Expect = 4e-28 Identities = 69/87 (79%), Positives = 72/87 (82%), Gaps = 15/87 (17%) Query: 1 MNGPSARD--------------AGDGQP-RAQFLTVAEVASLMRVSKMTVYRLVHNGELP 45 MNGPS+RD AGDGQP RAQFLTVAEVASLMRVSKMTVYRLVHNGELP Sbjct: 4 MNGPSSRDSAGGKAARDAGQSTAGDGQPQRAQFLTVAEVASLMRVSKMTVYRLVHNGELP 63 Query: 46 AVRVGRSFRVHAKAVHDLLETSYFDAG 72 AVRVGRSFRVHAKAVHD+LE+SYFDAG Sbjct: 64 AVRVGRSFRVHAKAVHDMLESSYFDAG 90 >tr|D5PBS4|D5PBS4_9MYCO Tax_Id=525368 SubName: Full=Excisionase/Xis;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 83 Score = 126 bits (316), Expect = 1e-27 Identities = 65/79 (82%), Positives = 69/79 (87%), Gaps = 8/79 (10%) Query: 2 NGPSARDA--------GDGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSF 53 NGPSARD+ G+GQ R QFLTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSF Sbjct: 5 NGPSARDSAGKRDTGPGEGQGRTQFLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSF 64 Query: 54 RVHAKAVHDLLETSYFDAG 72 RVHAKAVHD+LETSYFDAG Sbjct: 65 RVHAKAVHDMLETSYFDAG 83 >tr|A4T338|A4T338_MYCGI Tax_Id=350054 SubName: Full=DNA binding domain, excisionase family;[Mycobacterium gilvum] Length = 90 Score = 125 bits (313), Expect = 2e-27 Identities = 68/87 (78%), Positives = 71/87 (81%), Gaps = 15/87 (17%) Query: 1 MNGPSARD--------------AGDGQ-PRAQFLTVAEVASLMRVSKMTVYRLVHNGELP 45 MNGPS+RD AGD Q PRAQFLTVAEVASLMRVSKMTVYRLVHNGELP Sbjct: 4 MNGPSSRDSAGGKAARDAGQGSAGDAQSPRAQFLTVAEVASLMRVSKMTVYRLVHNGELP 63 Query: 46 AVRVGRSFRVHAKAVHDLLETSYFDAG 72 AVRVGRSFRVHAKAVHD+LE+SYFDAG Sbjct: 64 AVRVGRSFRVHAKAVHDMLESSYFDAG 90 >tr|Q73ST1|Q73ST1_MYCPA Tax_Id=1770 SubName: Full=Putative uncharacterized protein;[Mycobacterium paratuberculosis] Length = 85 Score = 123 bits (308), Expect = 8e-27 Identities = 66/81 (81%), Positives = 69/81 (85%), Gaps = 10/81 (12%) Query: 2 NGPSARDA---------GDGQP-RAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGR 51 NGPSARD+ GDGQ R QFLTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGR Sbjct: 5 NGPSARDSAGKARDAGSGDGQQGRTQFLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGR 64 Query: 52 SFRVHAKAVHDLLETSYFDAG 72 SFRVHAKAVHD+LETSYFDAG Sbjct: 65 SFRVHAKAVHDMLETSYFDAG 85 >tr|Q8VKK5|Q8VKK5_MYCTU Tax_Id=1773 SubName: Full=Excisionase, putative; SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|Q7U1W2|Q7U1W2_MYCBO Tax_Id=1765 SubName: Full=Putative uncharacterized protein Mb0512;[Mycobacterium bovis] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|Q49828|Q49828_MYCLE Tax_Id=1769 SubName: Full=B2168_C1_172; SubName: Full=Possible DNA-binding protein;[Mycobacterium leprae] Length = 86 Score = 120 bits (301), Expect = 5e-26 Identities = 63/82 (76%), Positives = 66/82 (80%), Gaps = 11/82 (13%) Query: 2 NGPSARDAGDG-----------QPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVG 50 NGPSARD+ QPR QFLTVAEVA+LMRVSKMTVYRLVHNGELPAVRVG Sbjct: 5 NGPSARDSAGKSVRDTGSFEGQQPRTQFLTVAEVATLMRVSKMTVYRLVHNGELPAVRVG 64 Query: 51 RSFRVHAKAVHDLLETSYFDAG 72 RSFRVHAKAVHD+LETSYFD G Sbjct: 65 RSFRVHAKAVHDMLETSYFDVG 86 >tr|C6DT85|C6DT85_MYCTK Tax_Id=478434 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|C1AKI0|C1AKI0_MYCBT Tax_Id=561275 SubName: Full=Putative uncharacterized protein;[Mycobacterium bovis] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|B8ZT78|B8ZT78_MYCLB Tax_Id=561304 SubName: Full=Possible DNA-binding protein;[Mycobacterium leprae] Length = 86 Score = 120 bits (301), Expect = 5e-26 Identities = 63/82 (76%), Positives = 66/82 (80%), Gaps = 11/82 (13%) Query: 2 NGPSARDAGDG-----------QPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVG 50 NGPSARD+ QPR QFLTVAEVA+LMRVSKMTVYRLVHNGELPAVRVG Sbjct: 5 NGPSARDSAGKSVRDTGSFEGQQPRTQFLTVAEVATLMRVSKMTVYRLVHNGELPAVRVG 64 Query: 51 RSFRVHAKAVHDLLETSYFDAG 72 RSFRVHAKAVHD+LETSYFD G Sbjct: 65 RSFRVHAKAVHDMLETSYFDVG 86 >tr|A5WJL4|A5WJL4_MYCTF Tax_Id=336982 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|A5TZN0|A5TZN0_MYCTA Tax_Id=419947 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|A1KFX6|A1KFX6_MYCBP Tax_Id=410289 SubName: Full=Putative uncharacterized protein BCG_0543;[Mycobacterium bovis] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|D6FZ13|D6FZ13_MYCTU Tax_Id=478435 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis KZN 605] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|D6FYB0|D6FYB0_MYCTU Tax_Id=611304 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis K85] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|D6FDZ7|D6FDZ7_MYCTU Tax_Id=611303 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis CPHL_A] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|D6F1A3|D6F1A3_MYCTU Tax_Id=611302 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis T46] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|D5ZCM5|D5ZCM5_MYCTU Tax_Id=537210 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis T17] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|D5Z078|D5Z078_MYCTU Tax_Id=537209 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis GM 1503] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|D5YNE3|D5YNE3_MYCTU Tax_Id=515616 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis 02_1987] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|D5YCI3|D5YCI3_MYCTU Tax_Id=520140 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis EAS054] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|D5Y0G9|D5Y0G9_MYCTU Tax_Id=520141 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis T85] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|D5XQC0|D5XQC0_MYCTU Tax_Id=515617 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis T92] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|A2VFI5|A2VFI5_MYCTU Tax_Id=348776 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis C] Length = 78 Score = 120 bits (301), Expect = 5e-26 Identities = 62/74 (83%), Positives = 65/74 (87%), Gaps = 3/74 (4%) Query: 2 NGPSARDAG---DGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 NGPSARD G Q + Q LTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK Sbjct: 5 NGPSARDTGFVEGQQAKTQLLTVAEVAALMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD+LETSYFDAG Sbjct: 65 AVHDMLETSYFDAG 78 >tr|B1MHJ7|B1MHJ7_MYCA9 Tax_Id=561007 SubName: Full=Putative uncharacterized protein;[Mycobacterium abscessus] Length = 83 Score = 118 bits (295), Expect = 3e-25 Identities = 62/83 (74%), Positives = 67/83 (80%), Gaps = 11/83 (13%) Query: 1 MNGPSARDAGDGQP-----------RAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRV 49 MNGPSARD +P +AQFLTVAEVA+LMRVSKMTVYRLVHNGELPAVRV Sbjct: 1 MNGPSARDGAGAKPGRDASAAGQSGKAQFLTVAEVAALMRVSKMTVYRLVHNGELPAVRV 60 Query: 50 GRSFRVHAKAVHDLLETSYFDAG 72 GRSFRVHAKAV+DLL+ SYFDAG Sbjct: 61 GRSFRVHAKAVNDLLQASYFDAG 83 >tr|Q0SF19|Q0SF19_RHOSR Tax_Id=101510 SubName: Full=Possible excisionase;[Rhodococcus sp.] Length = 78 Score = 114 bits (285), Expect = 4e-24 Identities = 60/72 (83%), Positives = 62/72 (86%), Gaps = 3/72 (4%) Query: 4 PSARDAGDGQPR---AQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAV 60 PS A DGQP QFLTVAEVA+LMRVSKMTVYRLVH+GELPAVRVGRSFRVHAKAV Sbjct: 7 PSRGSAPDGQPALAGTQFLTVAEVATLMRVSKMTVYRLVHSGELPAVRVGRSFRVHAKAV 66 Query: 61 HDLLETSYFDAG 72 HD LETSYFDAG Sbjct: 67 HDYLETSYFDAG 78 >tr|C1AZ50|C1AZ50_RHOOB Tax_Id=632772 SubName: Full=Putative uncharacterized protein;[Rhodococcus opacus] Length = 78 Score = 114 bits (285), Expect = 4e-24 Identities = 60/72 (83%), Positives = 62/72 (86%), Gaps = 3/72 (4%) Query: 4 PSARDAGDGQPR---AQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAV 60 PS A DGQP QFLTVAEVA+LMRVSKMTVYRLVH+GELPAVRVGRSFRVHAKAV Sbjct: 7 PSKGSAPDGQPALAGTQFLTVAEVATLMRVSKMTVYRLVHSGELPAVRVGRSFRVHAKAV 66 Query: 61 HDLLETSYFDAG 72 HD LETSYFDAG Sbjct: 67 HDYLETSYFDAG 78 >tr|D0L491|D0L491_GORB4 Tax_Id=526226 SubName: Full=DNA binding domain protein, excisionase family;[Gordonia bronchialis] Length = 82 Score = 113 bits (282), Expect = 9e-24 Identities = 59/71 (83%), Positives = 61/71 (85%), Gaps = 4/71 (5%) Query: 2 NGPSARDAGDGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVH 61 NGP G+ +QFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVH Sbjct: 16 NGP----VGNAASGSQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVH 71 Query: 62 DLLETSYFDAG 72 D LETSYFDAG Sbjct: 72 DYLETSYFDAG 82 >tr|C0ZUU7|C0ZUU7_RHOE4 Tax_Id=234621 SubName: Full=Putative uncharacterized protein;[Rhodococcus erythropolis] Length = 78 Score = 113 bits (282), Expect = 9e-24 Identities = 59/74 (79%), Positives = 63/74 (85%), Gaps = 3/74 (4%) Query: 2 NGPSARDAGDGQPRA---QFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 N PS + DG+P QFLTVAEVA+LMRVSKMTVYRLVH+GELPAVRVGRSFRVHAK Sbjct: 5 NKPSMGSSHDGKPAVAGTQFLTVAEVATLMRVSKMTVYRLVHSGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD LETSYFDAG Sbjct: 65 AVHDYLETSYFDAG 78 >tr|B2HQW7|B2HQW7_MYCMM Tax_Id=216594 SubName: Full=Conserved protein;[Mycobacterium marinum] Length = 85 Score = 113 bits (282), Expect = 9e-24 Identities = 61/79 (77%), Positives = 66/79 (83%), Gaps = 11/79 (13%) Query: 2 NGPSARDA----------GDGQPR-AQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVG 50 NGPSARD+ G+GQ +QFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVG Sbjct: 5 NGPSARDSAGKSVRDSGSGEGQQAGSQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVG 64 Query: 51 RSFRVHAKAVHDLLETSYF 69 RSFRVHAKAVHD+L+TSYF Sbjct: 65 RSFRVHAKAVHDMLQTSYF 83 >tr|A0PW05|A0PW05_MYCUA Tax_Id=362242 SubName: Full=Conserved protein;[Mycobacterium ulcerans] Length = 85 Score = 113 bits (282), Expect = 9e-24 Identities = 61/79 (77%), Positives = 66/79 (83%), Gaps = 11/79 (13%) Query: 2 NGPSARDA----------GDGQPR-AQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVG 50 NGPSARD+ G+GQ +QFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVG Sbjct: 5 NGPSARDSAGKSVRDSGSGEGQQAGSQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVG 64 Query: 51 RSFRVHAKAVHDLLETSYF 69 RSFRVHAKAVHD+L+TSYF Sbjct: 65 RSFRVHAKAVHDMLQTSYF 83 >tr|C3JK13|C3JK13_RHOER Tax_Id=596309 SubName: Full=Putative uncharacterized protein;[Rhodococcus erythropolis SK121] Length = 78 Score = 113 bits (282), Expect = 9e-24 Identities = 59/74 (79%), Positives = 63/74 (85%), Gaps = 3/74 (4%) Query: 2 NGPSARDAGDGQPRA---QFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 N PS + DG+P QFLTVAEVA+LMRVSKMTVYRLVH+GELPAVRVGRSFRVHAK Sbjct: 5 NKPSMGSSHDGKPAVAGTQFLTVAEVATLMRVSKMTVYRLVHSGELPAVRVGRSFRVHAK 64 Query: 59 AVHDLLETSYFDAG 72 AVHD LETSYFDAG Sbjct: 65 AVHDYLETSYFDAG 78 >tr|Q5YP63|Q5YP63_NOCFA Tax_Id=37329 SubName: Full=Putative uncharacterized protein;[Nocardia farcinica] Length = 102 Score = 108 bits (269), Expect = 3e-22 Identities = 56/71 (78%), Positives = 59/71 (83%) Query: 2 NGPSARDAGDGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVH 61 NGP + QFLTVAEVA+LMRVSKMTVYRLVH+GELPAVRVGRSFRVHAKAVH Sbjct: 32 NGPGSPGQSVLGGGTQFLTVAEVANLMRVSKMTVYRLVHSGELPAVRVGRSFRVHAKAVH 91 Query: 62 DLLETSYFDAG 72 D LETSYFDAG Sbjct: 92 DYLETSYFDAG 102 >tr|D5UT11|D5UT11_TSUPA Tax_Id=521096 SubName: Full=DNA binding domain protein, excisionase family;[Tsukamurella paurometabola DSM 20162] Length = 80 Score = 106 bits (265), Expect = 8e-22 Identities = 56/74 (75%), Positives = 59/74 (79%), Gaps = 3/74 (4%) Query: 2 NGPSARDAGDGQPRA---QFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAK 58 N A GQP A FLTVAEVA+LMRVSKMTVYRLVHNGELPAVRVGRSFRVH K Sbjct: 7 NSKPAEIGAPGQPAAAGSSFLTVAEVATLMRVSKMTVYRLVHNGELPAVRVGRSFRVHEK 66 Query: 59 AVHDLLETSYFDAG 72 AVHD L+TS+FDAG Sbjct: 67 AVHDYLQTSFFDAG 80 >tr|D5PRY6|D5PRY6_COREQ Tax_Id=525370 SubName: Full=Excisionase/Xis;[Rhodococcus equi ATCC 33707] Length = 80 Score = 106 bits (264), Expect = 1e-21 Identities = 53/66 (80%), Positives = 58/66 (87%) Query: 7 RDAGDGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDLLET 66 ++ G QFLTVAEVA+LMRVSKMTVYRLVH+GELPAVRVGRSFRVHAKAVHD L+T Sbjct: 15 QEGQSGLGGTQFLTVAEVAALMRVSKMTVYRLVHSGELPAVRVGRSFRVHAKAVHDYLQT 74 Query: 67 SYFDAG 72 SYFDAG Sbjct: 75 SYFDAG 80 >tr|C7MSZ7|C7MSZ7_SACVD Tax_Id=471857 SubName: Full=DNA-binding protein, excisionase family;[Saccharomonospora viridis] Length = 71 Score = 95.1 bits (235), Expect = 2e-18 Identities = 47/69 (68%), Positives = 54/69 (78%) Query: 4 PSARDAGDGQPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDL 63 P+ + G QFLTVAEVASLMRVSKMTVYRLVH+GELPA RVG+SFRV KAVH+ Sbjct: 3 PNEEEDVSGTRHVQFLTVAEVASLMRVSKMTVYRLVHSGELPAARVGKSFRVPEKAVHEY 62 Query: 64 LETSYFDAG 72 L+ +YFD G Sbjct: 63 LDNAYFDVG 71 >tr|A0QLJ2|A0QLJ2_MYCA1 Tax_Id=243243 SubName: Full=Conserved domain protein;[Mycobacterium avium] Length = 45 Score = 92.4 bits (228), Expect = 2e-17 Identities = 44/45 (97%), Positives = 45/45 (100%) Query: 28 MRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDLLETSYFDAG 72 MRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHD+LETSYFDAG Sbjct: 1 MRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDMLETSYFDAG 45 >tr|Q8NT97|Q8NT97_CORGL Tax_Id=1718 SubName: Full=Putative uncharacterized protein Cgl0411;[Corynebacterium glutamicum] Length = 66 Score = 90.9 bits (224), Expect = 5e-17 Identities = 43/55 (78%), Positives = 52/55 (94%) Query: 18 FLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDLLETSYFDAG 72 FLTVAEVA +MRVSKMTVYRLVH+GELPAVRVGRSFRVH KAV++ L++S+++AG Sbjct: 12 FLTVAEVAEIMRVSKMTVYRLVHSGELPAVRVGRSFRVHEKAVNEYLDSSFYEAG 66 >tr|Q6NJK6|Q6NJK6_CORDI Tax_Id=1717 SubName: Full=Putative DNA-binding (Excisionase) protein;[Corynebacterium diphtheriae] Length = 63 Score = 90.9 bits (224), Expect = 5e-17 Identities = 43/60 (71%), Positives = 52/60 (86%) Query: 13 QPRAQFLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDLLETSYFDAG 72 + FLTVAEVA +MRVSKMTVYRLVH+GELPAVRVGRSFRVH KAV++ L++SY++ G Sbjct: 4 EDNGSFLTVAEVAEIMRVSKMTVYRLVHSGELPAVRVGRSFRVHEKAVNEYLDSSYYNVG 63 >tr|A4QB51|A4QB51_CORGB Tax_Id=340322 SubName: Full=Putative uncharacterized protein;[Corynebacterium glutamicum] Length = 63 Score = 90.9 bits (224), Expect = 5e-17 Identities = 43/55 (78%), Positives = 52/55 (94%) Query: 18 FLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDLLETSYFDAG 72 FLTVAEVA +MRVSKMTVYRLVH+GELPAVRVGRSFRVH KAV++ L++S+++AG Sbjct: 9 FLTVAEVAEIMRVSKMTVYRLVHSGELPAVRVGRSFRVHEKAVNEYLDSSFYEAG 63 >tr|Q6M7V2|Q6M7V2_CORGL Tax_Id=1718 SubName: Full=Extremely conserved POSSIBLE DNA-BINDING PROTEIN,;[Corynebacterium glutamicum] Length = 63 Score = 90.9 bits (224), Expect = 5e-17 Identities = 43/55 (78%), Positives = 52/55 (94%) Query: 18 FLTVAEVASLMRVSKMTVYRLVHNGELPAVRVGRSFRVHAKAVHDLLETSYFDAG 72 FLTVAEVA +MRVSKMTVYRLVH+GELPAVRVGRSFRVH KAV++ L++S+++AG Sbjct: 9 FLTVAEVAEIMRVSKMTVYRLVHSGELPAVRVGRSFRVHEKAVNEYLDSSFYEAG 63 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.321 0.133 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 546,741,369 Number of extensions: 15304408 Number of successful extensions: 39784 Number of sequences better than 10.0: 688 Number of HSP's gapped: 40064 Number of HSP's successfully gapped: 690 Length of query: 72 Length of database: 4,236,830,644 Length adjustment: 43 Effective length of query: 29 Effective length of database: 3,698,992,492 Effective search space: 107270782268 Effective search space used: 107270782268 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 75 (33.5 bits)