BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSMEG_0960
         (76 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           12,507,864 sequences; 4,236,830,644 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|A0QR25|A0QR25_MYCS2 Tax_Id=246196 SubName: Full=Putative tran...    55   3e-06
tr|A1T3D9|A1T3D9_MYCVP Tax_Id=350058 SubName: Full=Putative tran...    36   1.3  
tr|Q0ZNJ4|Q0ZNJ4_MYCFO Tax_Id=1766 SubName: Full=OrfB;[Mycobacte...    36   1.3  
tr|A4T347|A4T347_MYCGI Tax_Id=350054 SubName: Full=Putative tran...    36   1.8  

>tr|A0QR25|A0QR25_MYCS2 Tax_Id=246196 SubName: Full=Putative
          transmembrane protein;[Mycobacterium smegmatis]
          Length = 76

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 26/26 (100%), Positives = 26/26 (100%)

Query: 26 SRATVEVAPVLPGEPVTYSVTYSAPM 51
          SRATVEVAPVLPGEPVTYSVTYSAPM
Sbjct: 26 SRATVEVAPVLPGEPVTYSVTYSAPM 51


>tr|A1T3D9|A1T3D9_MYCVP Tax_Id=350058 SubName: Full=Putative
          transmembrane protein; Flags: Precursor;[Mycobacterium
          vanbaalenii]
          Length = 83

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 28 ATVEVAPVLPGEPVTYSVTYSAPM 51
          ATV VAPVL GEP T SV Y+AP+
Sbjct: 26 ATVTVAPVLDGEPETTSVVYNAPL 49


>tr|Q0ZNJ4|Q0ZNJ4_MYCFO Tax_Id=1766 SubName:
          Full=OrfB;[Mycobacterium fortuitum]
          Length = 75

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 14/23 (60%), Positives = 20/23 (86%)

Query: 29 TVEVAPVLPGEPVTYSVTYSAPM 51
          T+EVAPVL GEP T +++YS+P+
Sbjct: 29 TIEVAPVLEGEPATTAISYSSPL 51


>tr|A4T347|A4T347_MYCGI Tax_Id=350054 SubName: Full=Putative
          transmembrane protein; Flags: Precursor;[Mycobacterium
          gilvum]
          Length = 84

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 17/22 (77%), Positives = 17/22 (77%)

Query: 30 VEVAPVLPGEPVTYSVTYSAPM 51
          V VAPVLPGEP T S TY APM
Sbjct: 31 VTVAPVLPGEPSTSSYTYYAPM 52


  Database: Amellifera_nr
    Posted date:  Jul 23, 2010  5:10 AM
  Number of letters in database: 4,236,830,644
  Number of sequences in database:  12,507,864
  
Lambda     K      H
   0.314    0.126    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 12507864
Number of Hits to DB: 202,245,382
Number of extensions: 2816242
Number of successful extensions: 6894
Number of sequences better than 10.0: 4
Number of HSP's gapped: 6894
Number of HSP's successfully gapped: 4
Length of query: 76
Length of database: 4,236,830,644
Length adjustment: 47
Effective length of query: 29
Effective length of database: 3,648,961,036
Effective search space: 105819870044
Effective search space used: 105819870044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.5 bits)