BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_0976 (54 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0QR40|A0QR40_MYCS2 Tax_Id=246196 SubName: Full=Putative unch... 93 9e-18 tr|D5PBW2|D5PBW2_9MYCO Tax_Id=525368 SubName: Full=Putative unch... 74 4e-12 tr|A0QLF5|A0QLF5_MYCA1 Tax_Id=243243 SubName: Full=Putative unch... 72 3e-11 tr|A3PUC4|A3PUC4_MYCSJ Tax_Id=164757 SubName: Full=Putative unch... 68 3e-10 tr|A1UAR8|A1UAR8_MYCSK Tax_Id=189918 SubName: Full=Putative unch... 68 3e-10 tr|Q8VKJ8|Q8VKJ8_MYCTU Tax_Id=1773 SubName: Full=Putative unchar... 67 9e-10 tr|A2VFL4|A2VFL4_MYCTU Tax_Id=348776 SubName: Full=Putative unch... 67 9e-10 tr|A1T3F9|A1T3F9_MYCVP Tax_Id=350058 SubName: Full=Putative unch... 64 8e-09 tr|B2HRM2|B2HRM2_MYCMM Tax_Id=216594 SubName: Full=Conserved hyp... 58 3e-07 tr|A4T366|A4T366_MYCGI Tax_Id=350054 SubName: Full=Putative unch... 58 3e-07 tr|A0PLS6|A0PLS6_MYCUA Tax_Id=362242 SubName: Full=Conserved hyp... 58 3e-07 tr|B1MHG4|B1MHG4_MYCA9 Tax_Id=561007 SubName: Full=Putative unch... 47 6e-04 tr|D3D302|D3D302_9ACTO Tax_Id=102897 SubName: Full=Putative unch... 37 0.78 tr|A1SE12|A1SE12_NOCSJ Tax_Id=196162 SubName: Full=Putative unch... 34 5.1 tr|A8LCC3|A8LCC3_FRASN Tax_Id=298653 SubName: Full=Putative unch... 34 6.6 tr|A4AIZ6|A4AIZ6_9ACTN Tax_Id=312284 SubName: Full=Membrane prot... 34 6.6 tr|C6WNE3|C6WNE3_ACTMD Tax_Id=446462 SubName: Full=Putative unch... 33 8.7 >tr|A0QR40|A0QR40_MYCS2 Tax_Id=246196 SubName: Full=Putative uncharacterized protein;[Mycobacterium smegmatis] Length = 54 Score = 93.2 bits (230), Expect = 9e-18 Identities = 44/54 (81%), Positives = 44/54 (81%) Query: 1 MAYXXXXXXXXXXVYVGWRLSRAASEKSRTRVIGPDDDPDFLRKLGHGDNNPRP 54 MAY VYVGWRLSRAASEKSRTRVIGPDDDPDFLRKLGHGDNNPRP Sbjct: 1 MAYLLLLCILAGLVYVGWRLSRAASEKSRTRVIGPDDDPDFLRKLGHGDNNPRP 54 >tr|D5PBW2|D5PBW2_9MYCO Tax_Id=525368 SubName: Full=Putative uncharacterized protein;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 53 Score = 74.3 bits (181), Expect = 4e-12 Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 1 MAYXXXXXXXXXXVYVGWRLSRAASEKSRTRVIGPDDDPDFLRKLGHGDNNPR 53 M Y +YVGWR +R+ + +++TRVIGPDDDPDFLR+LGHGDNNPR Sbjct: 1 MLYLLLVLILGTLIYVGWRTARSQTHRAKTRVIGPDDDPDFLRRLGHGDNNPR 53 >tr|A0QLF5|A0QLF5_MYCA1 Tax_Id=243243 SubName: Full=Putative uncharacterized protein;[Mycobacterium avium] Length = 53 Score = 71.6 bits (174), Expect = 3e-11 Identities = 30/52 (57%), Positives = 37/52 (71%) Query: 1 MAYXXXXXXXXXXVYVGWRLSRAASEKSRTRVIGPDDDPDFLRKLGHGDNNP 52 M Y +YVGWR +R+ + + +TRVIGPDDDPDFLR+LGHGDNNP Sbjct: 1 MVYLLLVLILGTLIYVGWRAARSQAARPKTRVIGPDDDPDFLRRLGHGDNNP 52 >tr|A3PUC4|A3PUC4_MYCSJ Tax_Id=164757 SubName: Full=Putative uncharacterized protein;[Mycobacterium sp.] Length = 54 Score = 68.2 bits (165), Expect = 3e-10 Identities = 30/53 (56%), Positives = 36/53 (67%) Query: 1 MAYXXXXXXXXXXVYVGWRLSRAASEKSRTRVIGPDDDPDFLRKLGHGDNNPR 53 MAY VY+GWRL R ++ + + RVIGPDDDPDFLR+LG DNNPR Sbjct: 1 MAYLLLILVLAGLVYIGWRLMRVSATRPQRRVIGPDDDPDFLRRLGQDDNNPR 53 >tr|A1UAR8|A1UAR8_MYCSK Tax_Id=189918 SubName: Full=Putative uncharacterized protein;[Mycobacterium sp.] Length = 54 Score = 68.2 bits (165), Expect = 3e-10 Identities = 30/53 (56%), Positives = 36/53 (67%) Query: 1 MAYXXXXXXXXXXVYVGWRLSRAASEKSRTRVIGPDDDPDFLRKLGHGDNNPR 53 MAY VY+GWRL R ++ + + RVIGPDDDPDFLR+LG DNNPR Sbjct: 1 MAYLLLILVLAGLVYIGWRLMRVSATRPQRRVIGPDDDPDFLRRLGQDDNNPR 53 >tr|Q8VKJ8|Q8VKJ8_MYCTU Tax_Id=1773 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis] Length = 53 Score = 66.6 bits (161), Expect = 9e-10 Identities = 28/51 (54%), Positives = 35/51 (68%) Query: 1 MAYXXXXXXXXXXVYVGWRLSRAASEKSRTRVIGPDDDPDFLRKLGHGDNN 51 M Y +Y+GWR +RA + +TRVIGPDDDP+FLR+LGHGDNN Sbjct: 1 MLYLLLVLILATLIYLGWRAARAQMNRPKTRVIGPDDDPEFLRRLGHGDNN 51 >tr|A2VFL4|A2VFL4_MYCTU Tax_Id=348776 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis C] Length = 53 Score = 66.6 bits (161), Expect = 9e-10 Identities = 28/51 (54%), Positives = 35/51 (68%) Query: 1 MAYXXXXXXXXXXVYVGWRLSRAASEKSRTRVIGPDDDPDFLRKLGHGDNN 51 M Y +Y+GWR +RA + +TRVIGPDDDP+FLR+LGHGDNN Sbjct: 1 MLYLLLVLILATLIYLGWRAARAQMNRPKTRVIGPDDDPEFLRRLGHGDNN 51 >tr|A1T3F9|A1T3F9_MYCVP Tax_Id=350058 SubName: Full=Putative uncharacterized protein;[Mycobacterium vanbaalenii] Length = 59 Score = 63.5 bits (153), Expect = 8e-09 Identities = 28/54 (51%), Positives = 36/54 (66%) Query: 1 MAYXXXXXXXXXXVYVGWRLSRAASEKSRTRVIGPDDDPDFLRKLGHGDNNPRP 54 MAY VYVGWR++R + + RTRVIGPDDDP+FLR++ D+ PRP Sbjct: 1 MAYLLLILVLAALVYVGWRVARMNANRPRTRVIGPDDDPEFLRRINPRDDQPRP 54 >tr|B2HRM2|B2HRM2_MYCMM Tax_Id=216594 SubName: Full=Conserved hypothetical membrane protein;[Mycobacterium marinum] Length = 50 Score = 58.2 bits (139), Expect = 3e-07 Identities = 24/48 (50%), Positives = 32/48 (66%) Query: 1 MAYXXXXXXXXXXVYVGWRLSRAASEKSRTRVIGPDDDPDFLRKLGHG 48 M Y +Y+GWR +R+ + + +TRVIGPDDDP+FLRKLG G Sbjct: 1 MLYLLVVLVLGTLIYIGWRAARSQASRPKTRVIGPDDDPEFLRKLGQG 48 >tr|A4T366|A4T366_MYCGI Tax_Id=350054 SubName: Full=Putative uncharacterized protein;[Mycobacterium gilvum] Length = 54 Score = 58.2 bits (139), Expect = 3e-07 Identities = 26/53 (49%), Positives = 33/53 (62%) Query: 1 MAYXXXXXXXXXXVYVGWRLSRAASEKSRTRVIGPDDDPDFLRKLGHGDNNPR 53 MAY VYVGWR+ R + + RTR IGPDDDP+FLR++ D+ PR Sbjct: 1 MAYLLLVLVLAGLVYVGWRVIRMNANRPRTRTIGPDDDPEFLRRINPRDDQPR 53 >tr|A0PLS6|A0PLS6_MYCUA Tax_Id=362242 SubName: Full=Conserved hypothetical membrane protein;[Mycobacterium ulcerans] Length = 50 Score = 58.2 bits (139), Expect = 3e-07 Identities = 24/48 (50%), Positives = 32/48 (66%) Query: 1 MAYXXXXXXXXXXVYVGWRLSRAASEKSRTRVIGPDDDPDFLRKLGHG 48 M Y +Y+GWR +R+ + + +TRVIGPDDDP+FLRKLG G Sbjct: 1 MLYLLVVLVLGTLIYIGWRAARSQASRPKTRVIGPDDDPEFLRKLGQG 48 >tr|B1MHG4|B1MHG4_MYCA9 Tax_Id=561007 SubName: Full=Putative uncharacterized protein;[Mycobacterium abscessus] Length = 53 Score = 47.4 bits (111), Expect = 6e-04 Identities = 18/33 (54%), Positives = 26/33 (78%) Query: 14 VYVGWRLSRAASEKSRTRVIGPDDDPDFLRKLG 46 VY GWR+S++ + +TRV GPDDDP+FL ++G Sbjct: 14 VYAGWRISQSVPTRPQTRVTGPDDDPEFLWRIG 46 >tr|D3D302|D3D302_9ACTO Tax_Id=102897 SubName: Full=Putative uncharacterized protein;[Frankia sp. EUN1f] Length = 139 Score = 37.0 bits (84), Expect = 0.78 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 4/37 (10%) Query: 20 LSRAASEKSRTRVIGPDDDPDFLRKLGH----GDNNP 52 LSRA + R +GPDDDP+FLR+L GD P Sbjct: 98 LSRAEMRRQSIRPVGPDDDPEFLRELSDRIRGGDTEP 134 >tr|A1SE12|A1SE12_NOCSJ Tax_Id=196162 SubName: Full=Putative uncharacterized protein; Flags: Precursor;[Nocardioides sp.] Length = 64 Score = 34.3 bits (77), Expect = 5.1 Identities = 14/22 (63%), Positives = 16/22 (72%) Query: 31 RVIGPDDDPDFLRKLGHGDNNP 52 RV+GPDDDPDFLR L +P Sbjct: 39 RVVGPDDDPDFLRDLDRRRKHP 60 >tr|A8LCC3|A8LCC3_FRASN Tax_Id=298653 SubName: Full=Putative uncharacterized protein;[Frankia sp.] Length = 139 Score = 33.9 bits (76), Expect = 6.6 Identities = 13/26 (50%), Positives = 18/26 (69%) Query: 20 LSRAASEKSRTRVIGPDDDPDFLRKL 45 +SR + R +GPDDDP+FLR+L Sbjct: 99 VSRTGMRRQAVRPVGPDDDPEFLREL 124 >tr|A4AIZ6|A4AIZ6_9ACTN Tax_Id=312284 SubName: Full=Membrane protein;[marine actinobacterium PHSC20C1] Length = 110 Score = 33.9 bits (76), Expect = 6.6 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Query: 14 VYVGWRLSRAASEKS-RTRVIGPDDDPDFLRKL 45 V + + L +A S + RTR I PDDDPDFLR + Sbjct: 51 VVLWFMLGKARSVSAGRTRTIAPDDDPDFLRNM 83 >tr|C6WNE3|C6WNE3_ACTMD Tax_Id=446462 SubName: Full=Putative uncharacterized protein; Flags: Precursor;[Actinosynnema mirum] Length = 60 Score = 33.5 bits (75), Expect = 8.7 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Query: 18 WRLSRAASEKS--RTRVIGPDDDPDFLRKLG 46 WR +A +S R + PDDDP+FLRKLG Sbjct: 18 WRAFGSARPESVATRRFVAPDDDPEFLRKLG 48 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.318 0.139 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 409,258,355 Number of extensions: 9922478 Number of successful extensions: 24994 Number of sequences better than 10.0: 17 Number of HSP's gapped: 25015 Number of HSP's successfully gapped: 17 Length of query: 54 Length of database: 4,236,830,644 Length adjustment: 27 Effective length of query: 27 Effective length of database: 3,899,118,316 Effective search space: 105276194532 Effective search space used: 105276194532 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 75 (33.5 bits)