BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSMEG_1230
         (107 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           12,507,864 sequences; 4,236,830,644 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|A0QRT4|A0QRT4_MYCS2 Tax_Id=246196 SubName: Full=Putative unch...    97   6e-19

>tr|A0QRT4|A0QRT4_MYCS2 Tax_Id=246196 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium smegmatis]
          Length = 107

 Score = 97.1 bits (240), Expect = 6e-19
 Identities = 59/107 (55%), Positives = 59/107 (55%)

Query: 1   MTRRALAEDRGLQXXXXXXXXXXXXXXXXXSGVLVLLRDSHIQDDPGRXXXXXXXXXXXX 60
           MTRRALAEDRGLQ                 SGVLVLLRDSHIQDDPGR            
Sbjct: 1   MTRRALAEDRGLQAERTALAWTRTALAIAASGVLVLLRDSHIQDDPGRLVVVAAVAVVAL 60

Query: 61  XXXXXXXXXXXXXXXXXXXNAGRRYIRAAGVTILAEGLLVMIYLMLA 107
                              NAGRRYIRAAGVTILAEGLLVMIYLMLA
Sbjct: 61  GVFALGAHRRRRLLAHPRGNAGRRYIRAAGVTILAEGLLVMIYLMLA 107


  Database: Amellifera_nr
    Posted date:  Jul 23, 2010  5:10 AM
  Number of letters in database: 4,236,830,644
  Number of sequences in database:  12,507,864
  
Lambda     K      H
   0.327    0.143    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 12507864
Number of Hits to DB: 393,595,973
Number of extensions: 5526278
Number of successful extensions: 7526
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7525
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 4,236,830,644
Length adjustment: 75
Effective length of query: 32
Effective length of database: 3,298,740,844
Effective search space: 105559707008
Effective search space used: 105559707008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 75 (33.5 bits)