BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_1325 (554 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0QS28|A0QS28_MYCS2 Tax_Id=246196 (recD)SubName: Full=Exodeox... 837 0.0 tr|Q9RPH5|Q9RPH5_MYCSM Tax_Id=1772 (recD)SubName: Full=RecD;[Myc... 837 0.0 tr|B1MFU7|B1MFU7_MYCA9 Tax_Id=561007 SubName: Full=Exodeoxyribon... 618 e-175 tr|A1T4E3|A1T4E3_MYCVP Tax_Id=350058 SubName: Full=DNA helicase/... 574 e-161 tr|A3PUY5|A3PUY5_MYCSJ Tax_Id=164757 SubName: Full=DNA helicase/... 570 e-160 tr|Q1BDM1|Q1BDM1_MYCSS Tax_Id=164756 SubName: Full=DNA helicase/... 569 e-160 tr|A1UBC0|A1UBC0_MYCSK Tax_Id=189918 SubName: Full=DNA helicase/... 569 e-160 tr|A0QL87|A0QL87_MYCA1 Tax_Id=243243 (recD)SubName: Full=Exodeox... 569 e-160 tr|Q73SI2|Q73SI2_MYCPA Tax_Id=1770 (recD)SubName: Full=RecD;[Myc... 567 e-159 tr|A0PLZ2|A0PLZ2_MYCUA Tax_Id=362242 (recD)SubName: Full=Exodeox... 566 e-159 tr|B2HSF5|B2HSF5_MYCMM Tax_Id=216594 (recD)SubName: Full=Exodeox... 564 e-158 tr|A4T1L4|A4T1L4_MYCGI Tax_Id=350054 SubName: Full=DNA helicase/... 559 e-157 sp|P96919|EX5A_MYCTU Tax_Id=1773 (recD)RecName: Full=Exodeoxyrib... 531 e-148 tr|Q7U1L1|Q7U1L1_MYCBO Tax_Id=1765 (recD)SubName: Full=PROBABLE ... 531 e-148 tr|C6DU06|C6DU06_MYCTK Tax_Id=478434 SubName: Full=Exonuclease s... 531 e-148 tr|C1AKW0|C1AKW0_MYCBT Tax_Id=561275 (recD)SubName: Full=Putativ... 531 e-148 tr|A5WJZ4|A5WJZ4_MYCTF Tax_Id=336982 SubName: Full=Exonuclease V... 531 e-148 tr|A5U012|A5U012_MYCTA Tax_Id=419947 (recD)SubName: Full=Putativ... 531 e-148 tr|A1KGA7|A1KGA7_MYCBP Tax_Id=410289 (recD)SubName: Full=Probabl... 531 e-148 tr|D6FZS6|D6FZS6_MYCTU Tax_Id=478435 SubName: Full=Exonuclease s... 531 e-148 tr|D6FME0|D6FME0_MYCTU Tax_Id=611304 SubName: Full=Exonuclease s... 531 e-148 tr|D6FED5|D6FED5_MYCTU Tax_Id=611303 SubName: Full=Exonuclease s... 531 e-148 tr|D6F1N9|D6F1N9_MYCTU Tax_Id=611302 SubName: Full=Exodeoxyribon... 531 e-148 tr|D5ZD18|D5ZD18_MYCTU Tax_Id=537210 SubName: Full=Exonuclease s... 531 e-148 tr|D5Z0K9|D5Z0K9_MYCTU Tax_Id=537209 SubName: Full=Exonuclease V... 531 e-148 tr|D5YCX0|D5YCX0_MYCTU Tax_Id=520140 SubName: Full=Exonuclease V... 531 e-148 tr|A2VFV1|A2VFV1_MYCTU Tax_Id=348776 SubName: Full=Exonuclease V... 531 e-148 tr|D5YNS8|D5YNS8_MYCTU Tax_Id=515616 SubName: Full=Exonuclease s... 530 e-148 tr|D5Y0V2|D5Y0V2_MYCTU Tax_Id=520141 SubName: Full=Exonuclease s... 530 e-148 tr|D5P6H2|D5P6H2_9MYCO Tax_Id=525368 (recD2)SubName: Full=Exodeo... 452 e-125 tr|D2PR46|D2PR46_KRIFD Tax_Id=479435 SubName: Full=Exodeoxyribon... 446 e-123 tr|A1SDB3|A1SDB3_NOCSJ Tax_Id=196162 SubName: Full=DNA helicase/... 343 3e-92 tr|D3FF75|D3FF75_CONWI Tax_Id=469383 SubName: Full=Exodeoxyribon... 335 8e-90 tr|Q5YWP7|Q5YWP7_NOCFA Tax_Id=37329 (recD)SubName: Full=Putative... 293 4e-77 tr|A6W6P3|A6W6P3_KINRD Tax_Id=266940 SubName: Full=Exodeoxyribon... 285 2e-74 tr|D5UHJ9|D5UHJ9_9CELL Tax_Id=446466 SubName: Full=Exodeoxyribon... 276 6e-72 tr|D5XQQ4|D5XQQ4_MYCTU Tax_Id=515617 SubName: Full=Exonuclease V... 275 1e-71 tr|D0L8X2|D0L8X2_GORB4 Tax_Id=526226 SubName: Full=Exodeoxyribon... 253 4e-65 tr|A4VRQ4|A4VRQ4_PSEU5 Tax_Id=379731 (recD)SubName: Full=Exodeox... 210 4e-52 tr|C1ACJ0|C1ACJ0_GEMAT Tax_Id=379066 (recD)SubName: Full=Exodeox... 207 4e-51 tr|C8R0E5|C8R0E5_9DELT Tax_Id=589865 SubName: Full=Exodeoxyribon... 207 4e-51 tr|Q6ANK0|Q6ANK0_DESPS Tax_Id=84980 SubName: Full=Related to exo... 206 7e-51 tr|C9XZJ2|C9XZJ2_CROTZ Tax_Id=413502 (recD)SubName: Full=Exodeox... 206 7e-51 tr|B3ECZ3|B3ECZ3_CHLL2 Tax_Id=290315 SubName: Full=Exodeoxyribon... 204 3e-50 tr|A1BGA2|A1BGA2_CHLPD Tax_Id=290317 SubName: Full=DNA helicase/... 201 2e-49 >tr|A0QS28|A0QS28_MYCS2 Tax_Id=246196 (recD)SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Mycobacterium smegmatis] Length = 554 Score = 837 bits (2163), Expect = 0.0 Identities = 446/554 (80%), Positives = 446/554 (80%) Query: 1 MSLLEAFAEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQV 60 MSLLEAFAEILEPADVHVAQRLTVLADEPDASVE GGSVCVDLRSVAGQV Sbjct: 1 MSLLEAFAEILEPADVHVAQRLTVLADEPDASVELAVALAVRALRGGSVCVDLRSVAGQV 60 Query: 61 EXXXXXXXXXXXXXXXXXXXXXXGQPPVLRLFGDLLYLDRYWLEEQQVCDDVLALVSARP 120 E GQPPVLRLFGDLLYLDRYWLEEQQVCDDVLALVSARP Sbjct: 61 ELPDLPWPDPDAWLAALAASPLLGQPPVLRLFGDLLYLDRYWLEEQQVCDDVLALVSARP 120 Query: 121 GGAVPDVSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 180 GGAVPDVSRLFGAGFEEQRAAAKVALSQ G Sbjct: 121 GGAVPDVSRLFGAGFEEQRAAAKVALSQGLTVLTGGPGTGKTTTVARLLALLAEQAALAG 180 Query: 181 KPSPRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRF 240 KPSPRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRF Sbjct: 181 KPSPRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRF 240 Query: 241 RHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADL 300 RHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADL Sbjct: 241 RHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADL 300 Query: 301 VEGLGSRGVAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVHEDPVEQLR 360 VEGLGSRGVAELKTSHRFGESIGALASAIRT EHIEWVHEDPVEQLR Sbjct: 301 VEGLGSRGVAELKTSHRFGESIGALASAIRTGDADAALAVLAAGGEHIEWVHEDPVEQLR 360 Query: 361 EVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEP 420 EVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEP Sbjct: 361 EVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEP 420 Query: 421 LWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAGTFATGRLTDVETMHA 480 LWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAGTFATGRLTDVETMHA Sbjct: 421 LWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAGTFATGRLTDVETMHA 480 Query: 481 MTIHKSQGSQADEVTVLLPSEDSRLLTRELFYXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540 MTIHKSQGSQADEVTVLLPSEDSRLLTRELFY Sbjct: 481 MTIHKSQGSQADEVTVLLPSEDSRLLTRELFYTAVTRAKTRVRVVGAEAEVRAAIERQAV 540 Query: 541 XXTGLRKRLRPAGV 554 TGLRKRLRPAGV Sbjct: 541 RATGLRKRLRPAGV 554 >tr|Q9RPH5|Q9RPH5_MYCSM Tax_Id=1772 (recD)SubName: Full=RecD;[Mycobacterium smegmatis] Length = 554 Score = 837 bits (2163), Expect = 0.0 Identities = 446/554 (80%), Positives = 446/554 (80%) Query: 1 MSLLEAFAEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQV 60 MSLLEAFAEILEPADVHVAQRLTVLADEPDASVE GGSVCVDLRSVAGQV Sbjct: 1 MSLLEAFAEILEPADVHVAQRLTVLADEPDASVELAVALAVRALRGGSVCVDLRSVAGQV 60 Query: 61 EXXXXXXXXXXXXXXXXXXXXXXGQPPVLRLFGDLLYLDRYWLEEQQVCDDVLALVSARP 120 E GQPPVLRLFGDLLYLDRYWLEEQQVCDDVLALVSARP Sbjct: 61 ELPDLPWPDPDAWLAALAASPLLGQPPVLRLFGDLLYLDRYWLEEQQVCDDVLALVSARP 120 Query: 121 GGAVPDVSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 180 GGAVPDVSRLFGAGFEEQRAAAKVALSQ G Sbjct: 121 GGAVPDVSRLFGAGFEEQRAAAKVALSQGLTVLTGGPGTGKTTTVARLLALLAEQAALAG 180 Query: 181 KPSPRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRF 240 KPSPRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRF Sbjct: 181 KPSPRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRF 240 Query: 241 RHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADL 300 RHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADL Sbjct: 241 RHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADL 300 Query: 301 VEGLGSRGVAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVHEDPVEQLR 360 VEGLGSRGVAELKTSHRFGESIGALASAIRT EHIEWVHEDPVEQLR Sbjct: 301 VEGLGSRGVAELKTSHRFGESIGALASAIRTGDADAALAVLAAGGEHIEWVHEDPVEQLR 360 Query: 361 EVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEP 420 EVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEP Sbjct: 361 EVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEP 420 Query: 421 LWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAGTFATGRLTDVETMHA 480 LWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAGTFATGRLTDVETMHA Sbjct: 421 LWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAGTFATGRLTDVETMHA 480 Query: 481 MTIHKSQGSQADEVTVLLPSEDSRLLTRELFYXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540 MTIHKSQGSQADEVTVLLPSEDSRLLTRELFY Sbjct: 481 MTIHKSQGSQADEVTVLLPSEDSRLLTRELFYTAVTRAKTRVRVVGAEAEVRAAIERQAV 540 Query: 541 XXTGLRKRLRPAGV 554 TGLRKRLRPAGV Sbjct: 541 RATGLRKRLRPAGV 554 >tr|B1MFU7|B1MFU7_MYCA9 Tax_Id=561007 SubName: Full=Exodeoxyribonuclease V, alpha subunit (RecD);[Mycobacterium abscessus] Length = 552 Score = 618 bits (1594), Expect = e-175 Identities = 335/513 (65%), Positives = 368/513 (71%), Gaps = 4/513 (0%) Query: 1 MSLLEAFAEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQV 60 MSL+EAF EILEPADVHVAQRLT LA E D SVE GGSVCVDLR+VA QV Sbjct: 1 MSLVEAFGEILEPADVHVAQRLTALASETDESVELAIALAVRALRGGSVCVDLRAVAAQV 60 Query: 61 EXXXXXXXXXXXXXXXXXXXXXXGQPPVLRLFGDLLYLDRYWLEEQQVCDDVLALVSA-R 119 + G+PPVLRLFGDLLYLDRYW EEQQVC DV AL++A + Sbjct: 61 DMPSLPWPAADDWLAAVRASPLAGEPPVLRLFGDLLYLDRYWREEQQVCTDVQALMAAAQ 120 Query: 120 PGGAVPDVSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179 P VP RLF GFEEQRAAA +ALSQ Sbjct: 121 PRTEVPTYERLFPQGFEEQRAAADIALSQGLTVLTGGPGTGKTTTVARLLALLADQASSA 180 Query: 180 GKPSPRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSR 239 RIALAAPTGKAAARLQEAVQLE++QLD ++R RL GL ATTLHRLLG RPDTSSR Sbjct: 181 SAAPLRIALAAPTGKAAARLQEAVQLEVNQLDAVDRSRLAGLQATTLHRLLGSRPDTSSR 240 Query: 240 FRHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLAD 299 F+H R NRLPHDVIVVDETSMVSLTMMARLLEAVRPQ RL+LVGDPDQLASVEAGAVLAD Sbjct: 241 FKHDRGNRLPHDVIVVDETSMVSLTMMARLLEAVRPQARLLLVGDPDQLASVEAGAVLAD 300 Query: 300 LVEGLGSRGVAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVHEDPVEQL 359 LVEGL S VA L+TSHRFG +IGALA+A+R H+EW + E L Sbjct: 301 LVEGLESERVAALRTSHRFGAAIGALAAAVRDGDADRALEVLASGDPHVEWSTDS--EGL 358 Query: 360 REVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGE 419 R+V+VP A+ LR A++ GD ALA LDEHR+LCAHR GP GV HWNRQV+RW+ EETGE Sbjct: 359 RDVLVPQALALRAASLSGDATAALAVLDEHRMLCAHRHGPFGVTHWNRQVERWITEETGE 418 Query: 420 PLWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAGTFATGRLTDVETMH 479 P W WY GRPILVTANDYGL+LYNGDTGV VA PDG+RAVIG A +FAT RL +VETMH Sbjct: 419 PHWAPWYAGRPILVTANDYGLRLYNGDTGVTVAGPDGLRAVIG-AASFATSRLVEVETMH 477 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQA+EVTVLLPSEDSRLLTRELFY Sbjct: 478 AMTIHKSQGSQANEVTVLLPSEDSRLLTRELFY 510 >tr|A1T4E3|A1T4E3_MYCVP Tax_Id=350058 SubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Mycobacterium vanbaalenii] Length = 551 Score = 574 bits (1479), Expect = e-161 Identities = 309/510 (60%), Positives = 352/510 (69%), Gaps = 3/510 (0%) Query: 4 LEAFAEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXX 63 +EAF+E+ EPAD+HVAQRLT L E D SV GGSVCVDLR++A QV Sbjct: 3 VEAFSELFEPADLHVAQRLTTLGKEGDDSVALAVALAVRALRGGSVCVDLRAIATQVGMP 62 Query: 64 XXXXXXXXXXXXXXXXXXXXGQPPVLRLFGDLLYLDRYWLEEQQVCDDVLALVSARPGGA 123 + VLR+ GDLLYLDRYW EEQQVCDDVLAL+++ Sbjct: 63 ELPWPEPDRWLAAVGASPLADER-VLRMHGDLLYLDRYWREEQQVCDDVLALLASPLPAT 121 Query: 124 VPDVSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPS 183 P + RLF AG+EEQR AAKVAL Q G Sbjct: 122 APSIERLFPAGWEEQREAAKVALRQSLTVLTGGPGTGKTTTVARLLASIAEQAESAGGAP 181 Query: 184 PRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHH 243 PR+ALAAPTGKAAARLQ+AV E+ +L +++ RL GL ATTLHRLLG RPDTSSRFRHH Sbjct: 182 PRMALAAPTGKAAARLQDAVHAEVGKLPAVDQGRLAGLRATTLHRLLGSRPDTSSRFRHH 241 Query: 244 RANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEG 303 R NRLPHDVIVVDETSMVSLTMMARLLEAVRP TRL+ VGDPDQLASV+AGAVLADLVEG Sbjct: 242 RDNRLPHDVIVVDETSMVSLTMMARLLEAVRPDTRLLFVGDPDQLASVDAGAVLADLVEG 301 Query: 304 LGSRGVAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 LG GV ELKT HRFGE+IG+LA AIR + + W+ +DP + LR Sbjct: 302 LGDAGVVELKTPHRFGETIGSLAEAIRAGDADTAVQLLRAGGDAVAWLDTDDPSDALRAT 361 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +V A LR+AA+LGD R AL LD HRLLCAHRRGP GV HWNRQV+RWL ++TG+P+W Sbjct: 362 LVARADELRRAALLGDARAALGVLDGHRLLCAHRRGPFGVTHWNRQVERWLADKTGQPMW 421 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAGTFATGRLTDVETMHAMT 482 WY GRP+LVTANDYGL +YNGDTGVVVA PDG+RA +G FA GRL +VETM AMT Sbjct: 422 SQWYPGRPLLVTANDYGLGVYNGDTGVVVAAPDGLRAHVGSL-QFAPGRLGEVETMFAMT 480 Query: 483 IHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 IHKSQGSQADEVTVLLP +DSRLLTRELFY Sbjct: 481 IHKSQGSQADEVTVLLPPQDSRLLTRELFY 510 >tr|A3PUY5|A3PUY5_MYCSJ Tax_Id=164757 SubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Mycobacterium sp.] Length = 580 Score = 570 bits (1470), Expect = e-160 Identities = 319/523 (60%), Positives = 357/523 (68%), Gaps = 14/523 (2%) Query: 4 LEAF--AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVE 61 L AF AE+ EPADVHVA+RLTV+A EPD SV GSVCVDLR+VA QV Sbjct: 12 LRAFTDAEVFEPADVHVARRLTVMAKEPDESVALAVAFAVRALRNGSVCVDLRAVADQVG 71 Query: 62 XXXXXXXXXXXXXXXXXXXXXXGQPPVLRLF----GDLLYLDRYWLEEQQVCDDVLALVS 117 G PPVLRL+ GDLLYLDRYW EEQQVCDDVLAL+ Sbjct: 72 LPDLPWPDPEAWLTAVRASPLTGTPPVLRLYSGSSGDLLYLDRYWREEQQVCDDVLALLE 131 Query: 118 ARPGGAVPDVSRLFG-AGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXX 176 + P GAVP + RLF A F EQR AA++ALSQ Sbjct: 132 SSPPGAVPGLDRLFPTADFPEQRVAAEIALSQSLTVLTGGPGTGKTTTVARLLALLAEQA 191 Query: 177 XXXGKPSPRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDT 236 +P RIALAAPTGKAAARL EAV L+I LD ++R RL L A+TLHRLL R D Sbjct: 192 SLQNRPPLRIALAAPTGKAAARLLEAVHLQIAGLDAVDRDRLPELTASTLHRLLQRRRDN 251 Query: 237 SSRFRHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAV 296 +SRFRHHR NRLPHDVIVVDETSMVSLT+MARLLEAVRP +RL+LVGD DQLASVEAGAV Sbjct: 252 ASRFRHHRENRLPHDVIVVDETSMVSLTLMARLLEAVRPDSRLLLVGDADQLASVEAGAV 311 Query: 297 LADLVEGLGSRG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVHE 353 LADLV+GLG+R +A L TSHRFG IGALA AIR IEW Sbjct: 312 LADLVDGLGARDDVRIARLVTSHRFGAPIGALAKAIRDGETDTVIGLLRDGGPDIEWFDT 371 Query: 354 D-PVEQLREVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRW 412 D P ++LR+V+VPHA+RLR+AAILGD ALATLDEHRLLCAHRRGP GV HWNRQV+RW Sbjct: 372 DNPADRLRKVLVPHALRLREAAILGDGPAALATLDEHRLLCAHRRGPYGVRHWNRQVERW 431 Query: 413 LGEETGEPLWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFAT 469 L + TGEP+W WY GRP+LVTANDYGL+LYNGDTGV V DG+ AV+G F+T Sbjct: 432 LTDATGEPIWSDWYAGRPLLVTANDYGLRLYNGDTGVTVVRGDGLAAVVGSGAGPVEFST 491 Query: 470 GRLTDVETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 RL DVET+HAMTIHKSQGSQA EVTVLLP E+SRLLTRELFY Sbjct: 492 SRLADVETVHAMTIHKSQGSQAREVTVLLPDEESRLLTRELFY 534 >tr|Q1BDM1|Q1BDM1_MYCSS Tax_Id=164756 SubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Mycobacterium sp.] Length = 580 Score = 569 bits (1467), Expect = e-160 Identities = 319/524 (60%), Positives = 357/524 (68%), Gaps = 14/524 (2%) Query: 3 LLEAF--AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQV 60 LL AF AE+ EPADVHVA+RLT +A EPD SV GSVCVDLR+VA QV Sbjct: 11 LLRAFTDAEVFEPADVHVARRLTDMAKEPDESVALAVAFAVRALRNGSVCVDLRAVADQV 70 Query: 61 EXXXXXXXXXXXXXXXXXXXXXXGQPPVLRLF----GDLLYLDRYWLEEQQVCDDVLALV 116 G PPVLRL+ GDLLYLDRYW EEQQVCDDVLAL+ Sbjct: 71 GLPDLPWRDPEAWLTAVRASPLTGTPPVLRLYSGSSGDLLYLDRYWREEQQVCDDVLALL 130 Query: 117 SARPGGAVPDVSRLFG-AGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXX 175 + P GAVP + RLF A F EQR AA++ALSQ Sbjct: 131 ESSPPGAVPGLDRLFPTADFPEQRVAAEIALSQSLTVLTGGPGTGKTTTVARLLALLAEQ 190 Query: 176 XXXXGKPSPRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPD 235 +P RIALAAPTGKAAARL EAV L+I LD ++R RL L A+TLHRLL R D Sbjct: 191 ASLQNRPPLRIALAAPTGKAAARLLEAVHLQIAGLDAVDRDRLPELTASTLHRLLQRRRD 250 Query: 236 TSSRFRHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGA 295 +SRFRHHR NRLPHDVIVVDETSMVSLT+MARLLEAVRP +RL+LVGD DQLASVEAGA Sbjct: 251 NASRFRHHRENRLPHDVIVVDETSMVSLTLMARLLEAVRPDSRLLLVGDADQLASVEAGA 310 Query: 296 VLADLVEGLGSRG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH 352 VLADLV+GLG+R +A L TSHRFG IGALA AIR IEW Sbjct: 311 VLADLVDGLGARDDVRIARLVTSHRFGAPIGALAKAIRDGETDTVIGLLRDGGPDIEWFD 370 Query: 353 ED-PVEQLREVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQR 411 D P ++LR+V+VPHA+RLR+AAILGD ALATLDEHRLLCAHRRGP GV HWNRQV+R Sbjct: 371 TDNPADRLRKVLVPHALRLREAAILGDGPAALATLDEHRLLCAHRRGPYGVRHWNRQVER 430 Query: 412 WLGEETGEPLWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFA 468 WL + TGEP+W WY GRP+LVTANDYGL+LYNGDTGV V DG+ AV+G F+ Sbjct: 431 WLTDATGEPIWSDWYAGRPLLVTANDYGLRLYNGDTGVTVVRGDGLTAVVGSGAGPVEFS 490 Query: 469 TGRLTDVETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 T RL DVET+HAMTIHKSQGSQA EVTVLLP E+SRLLTRELFY Sbjct: 491 TSRLADVETVHAMTIHKSQGSQAREVTVLLPDEESRLLTRELFY 534 >tr|A1UBC0|A1UBC0_MYCSK Tax_Id=189918 SubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Mycobacterium sp.] Length = 580 Score = 569 bits (1467), Expect = e-160 Identities = 319/524 (60%), Positives = 357/524 (68%), Gaps = 14/524 (2%) Query: 3 LLEAF--AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQV 60 LL AF AE+ EPADVHVA+RLT +A EPD SV GSVCVDLR+VA QV Sbjct: 11 LLRAFTDAEVFEPADVHVARRLTDMAKEPDESVALAVAFAVRALRNGSVCVDLRAVADQV 70 Query: 61 EXXXXXXXXXXXXXXXXXXXXXXGQPPVLRLF----GDLLYLDRYWLEEQQVCDDVLALV 116 G PPVLRL+ GDLLYLDRYW EEQQVCDDVLAL+ Sbjct: 71 GLPDLPWRDPEAWLTAVRASPLTGTPPVLRLYSGSSGDLLYLDRYWREEQQVCDDVLALL 130 Query: 117 SARPGGAVPDVSRLFG-AGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXX 175 + P GAVP + RLF A F EQR AA++ALSQ Sbjct: 131 ESSPPGAVPGLDRLFPTADFPEQRVAAEIALSQSLTVLTGGPGTGKTTTVARLLALLAEQ 190 Query: 176 XXXXGKPSPRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPD 235 +P RIALAAPTGKAAARL EAV L+I LD ++R RL L A+TLHRLL R D Sbjct: 191 ASLQNRPPLRIALAAPTGKAAARLLEAVHLQIAGLDAVDRDRLPELTASTLHRLLQRRRD 250 Query: 236 TSSRFRHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGA 295 +SRFRHHR NRLPHDVIVVDETSMVSLT+MARLLEAVRP +RL+LVGD DQLASVEAGA Sbjct: 251 NASRFRHHRENRLPHDVIVVDETSMVSLTLMARLLEAVRPDSRLLLVGDADQLASVEAGA 310 Query: 296 VLADLVEGLGSRG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH 352 VLADLV+GLG+R +A L TSHRFG IGALA AIR IEW Sbjct: 311 VLADLVDGLGARDDVRIARLVTSHRFGAPIGALAKAIRDGETDTVIGLLRDGGPDIEWFD 370 Query: 353 ED-PVEQLREVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQR 411 D P ++LR+V+VPHA+RLR+AAILGD ALATLDEHRLLCAHRRGP GV HWNRQV+R Sbjct: 371 TDNPADRLRKVLVPHALRLREAAILGDGPAALATLDEHRLLCAHRRGPYGVRHWNRQVER 430 Query: 412 WLGEETGEPLWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFA 468 WL + TGEP+W WY GRP+LVTANDYGL+LYNGDTGV V DG+ AV+G F+ Sbjct: 431 WLTDATGEPIWSDWYAGRPLLVTANDYGLRLYNGDTGVTVVRGDGLTAVVGSGAGPVEFS 490 Query: 469 TGRLTDVETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 T RL DVET+HAMTIHKSQGSQA EVTVLLP E+SRLLTRELFY Sbjct: 491 TSRLADVETVHAMTIHKSQGSQAREVTVLLPDEESRLLTRELFY 534 >tr|A0QL87|A0QL87_MYCA1 Tax_Id=243243 (recD)SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Mycobacterium avium] Length = 570 Score = 569 bits (1467), Expect = e-160 Identities = 321/557 (57%), Positives = 354/557 (63%), Gaps = 11/557 (1%) Query: 6 AFAEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXX 65 A A I E AD+HVAQRLT L E D V GGSVCVDLR+V QV Sbjct: 16 ADAGIFEAADIHVAQRLTALTGESDDRVALAVALLVRALRGGSVCVDLRAVPAQVGAADL 75 Query: 66 XXXXXXXXXXXXXXXXXXGQPPVLRLFGDLLYLDRYWLEEQQVCDDVLALVSARPGGAVP 125 G PPVLR FGDLLY DRYWLEE+QVC D+LAL + P G V Sbjct: 76 PWPAAGDWLAAVRASPLLGPPPVLRFFGDLLYFDRYWLEEEQVCTDLLAL--SAPAGDVE 133 Query: 126 D--VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPS 183 RLF G+EEQRAAA++A+SQ G+P Sbjct: 134 SSCYERLFPPGYEEQRAAARIAVSQALTVLTGGPGTGKTTTVARLLALLVEQAERAGEPR 193 Query: 184 PRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHH 243 PRIALAAPTGKAAARL EAV EI+ LD +R RL GL TTLHRLLGPRPDTS RF+H+ Sbjct: 194 PRIALAAPTGKAAARLAEAVAAEIEHLDPADRARLAGLTGTTLHRLLGPRPDTSVRFKHN 253 Query: 244 RANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEG 303 R NRLPHD+IVVDETSMVSLTMMARL EAVRP TRL+LVGDPDQLASVEAGAVLADLV+G Sbjct: 254 RGNRLPHDIIVVDETSMVSLTMMARLAEAVRPDTRLILVGDPDQLASVEAGAVLADLVDG 313 Query: 304 LGSRG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWV-HEDPVEQL 359 L R VA L T HRFG +IGALA+AIR EHIEWV E P ++L Sbjct: 314 LAGRAGVRVAALATPHRFGSAIGALAAAIRAGDADRVVELLAAGGEHIEWVDSERPADRL 373 Query: 360 REVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGE 419 REV+V HA+RLR AA+LG + ALATLDEHRLLCAHR GP G WN V W+ EETG+ Sbjct: 374 REVLVSHALRLRSAALLGAAQAALATLDEHRLLCAHRDGPHGAVRWNTLVHNWIAEETGQ 433 Query: 420 PLWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVE 476 P W WY GRP+LVTANDYGL+LYNGDTGV VA DG+RAVI A FAT RL +VE Sbjct: 434 PAWSQWYAGRPLLVTANDYGLRLYNGDTGVTVAGADGLRAVIAGAAGPLDFATSRLGEVE 493 Query: 477 TMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFYXXXXXXXXXXXXXXXXXXXXXXXX 536 TMHAMTIHKSQGSQADEVTVL+P EDSRLLTRELFY Sbjct: 494 TMHAMTIHKSQGSQADEVTVLIPPEDSRLLTRELFYTAVTRAKSRVRVVGPEASVRAAIE 553 Query: 537 XXXXXXTGLRKRLRPAG 553 TGLR+RLR G Sbjct: 554 RRAIRATGLRQRLRVVG 570 >tr|Q73SI2|Q73SI2_MYCPA Tax_Id=1770 (recD)SubName: Full=RecD;[Mycobacterium paratuberculosis] Length = 574 Score = 567 bits (1461), Expect = e-159 Identities = 321/557 (57%), Positives = 353/557 (63%), Gaps = 11/557 (1%) Query: 6 AFAEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXX 65 A A I E ADV VAQRLT L E D V GGSVCVDLR+V QV Sbjct: 20 ADAGIFEAADVRVAQRLTALTGESDDRVALAVALLVRALRGGSVCVDLRAVPAQVGAADL 79 Query: 66 XXXXXXXXXXXXXXXXXXGQPPVLRLFGDLLYLDRYWLEEQQVCDDVLALVSARPGGAVP 125 G PPVLR FGDLLY DRYWLEE+QVC D+LAL + P G V Sbjct: 80 PWPAAGDWLAAVRASPLLGPPPVLRFFGDLLYFDRYWLEEEQVCTDLLAL--SAPAGDVE 137 Query: 126 D--VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPS 183 RLF G+EEQRAAA++A+SQ G+P Sbjct: 138 SSCYERLFPPGYEEQRAAARIAVSQALTVLTGGPGTGKTTTVARLLALLVEQAERAGEPR 197 Query: 184 PRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHH 243 PRIALAAPTGKAAARL EAV EI+ LD +R RL GL TTLHRLLGPRPDTS RF+H+ Sbjct: 198 PRIALAAPTGKAAARLAEAVAAEIEHLDPADRARLAGLTGTTLHRLLGPRPDTSVRFKHN 257 Query: 244 RANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEG 303 R NRLPHD+IVVDETSMVSLTMMARL EAVRP TRL+LVGDPDQLASVEAGAVLADLV+G Sbjct: 258 RGNRLPHDIIVVDETSMVSLTMMARLAEAVRPDTRLILVGDPDQLASVEAGAVLADLVDG 317 Query: 304 LGSRG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWV-HEDPVEQL 359 L R VA L T HRFG +IGALA+AIR EHIEWV E P ++L Sbjct: 318 LAGRAGVRVAALATPHRFGSAIGALAAAIRAGDADRVLELLAAGGEHIEWVDSERPADRL 377 Query: 360 REVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGE 419 REV+V HA+RLR AA+LG + ALATLDEHRLLCAHR GP G WN V W+ EETG+ Sbjct: 378 REVLVSHALRLRSAALLGAAQAALATLDEHRLLCAHRDGPHGAVRWNTLVHNWIAEETGQ 437 Query: 420 PLWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVE 476 P W WY GRP+LVTANDYGL+LYNGDTGV VA DG+RAVI A FAT RL +VE Sbjct: 438 PAWSQWYAGRPLLVTANDYGLRLYNGDTGVTVAGADGLRAVIAGAAGPLDFATSRLGEVE 497 Query: 477 TMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFYXXXXXXXXXXXXXXXXXXXXXXXX 536 TMHAMTIHKSQGSQADEVTVL+P EDSRLLTRELFY Sbjct: 498 TMHAMTIHKSQGSQADEVTVLIPPEDSRLLTRELFYTAVTRAKSRVRVVGPEASVRAAIE 557 Query: 537 XXXXXXTGLRKRLRPAG 553 TGLR+RLR G Sbjct: 558 RRAIRATGLRQRLRAVG 574 >tr|A0PLZ2|A0PLZ2_MYCUA Tax_Id=362242 (recD)SubName: Full=Exodeoxyribonuclease V (Alpha chain), RecD;[Mycobacterium ulcerans] Length = 587 Score = 566 bits (1458), Expect = e-159 Identities = 319/561 (56%), Positives = 363/561 (64%), Gaps = 17/561 (3%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +++ ADVHVAQRL ++ E D V GGSVCVDL ++ QV Sbjct: 27 ARVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQVGIADLPW 86 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVP- 125 G P VLRL D L+YLDRYW EEQQV DD+LAL++AR + P Sbjct: 87 PAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVADDILALLAARASASGPA 146 Query: 126 -DVSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSP 184 +V+RLF G+EEQRAAAK+AL+Q GK Sbjct: 147 IEVNRLFPPGYEEQRAAAKIALAQGLTVLTGGPGTGKTTTVARLLALFAEQAQLAGKARL 206 Query: 185 RIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHR 244 RIALAAPTGKAAARL EAVQ +ID+LD I+++R+ GL ATTLHRLLG RPDTSSRFRHHR Sbjct: 207 RIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLGSRPDTSSRFRHHR 266 Query: 245 ANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGL 304 NRLPHDVIV+DETSMVSLTMMARLLEAVRPQTRL+LVGDPDQLASVEAGAVLADLV+GL Sbjct: 267 GNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADLVDGL 326 Query: 305 GSR---GVAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLR 360 G+R VA L+ HRFGESIG LA+AIR +HIEW++ DP QLR Sbjct: 327 GARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHIEWINAADPTPQLR 386 Query: 361 EVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEP 420 V++PHA+ LR+A LGD ALATLDE RLLCAHRRGP G+ HWN QVQRWL E TGEP Sbjct: 387 NVLLPHALELRRAGALGDTAAALATLDEQRLLCAHRRGPYGIAHWNHQVQRWLTEATGEP 446 Query: 421 LWGSWYVGRPILVTANDYGLKLYNGDTGVVV-------ATPDGMRAVIGDAG---TFATG 470 +W SWY GRP+LVTANDYGL +YNGDTGV V A P +R VI A FAT Sbjct: 447 IWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVVIAGAQEPLKFATS 506 Query: 471 RLTDVETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFYXXXXXXXXXXXXXXXXXX 530 RL+DVETMHAMTIHKSQGSQAD+VTVLLP DSRLLTRELFY Sbjct: 507 RLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPECD 566 Query: 531 XXXXXXXXXXXXTGLRKRLRP 551 TGLR RL+P Sbjct: 567 VRAAIARRAIRATGLRSRLQP 587 >tr|B2HSF5|B2HSF5_MYCMM Tax_Id=216594 (recD)SubName: Full=Exodeoxyribonuclease V (Alpha chain), RecD;[Mycobacterium marinum] Length = 587 Score = 564 bits (1453), Expect = e-158 Identities = 318/561 (56%), Positives = 363/561 (64%), Gaps = 17/561 (3%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +++ ADVHVAQRL ++ E D V GGSVCVDL ++ QV Sbjct: 27 AGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQVGIADLPW 86 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVP- 125 G P VLRL D L+YLDRYW EEQQV DD+LAL++AR + P Sbjct: 87 PAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVADDILALLAARASASGPA 146 Query: 126 -DVSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSP 184 +V+RLF G+EEQRAAAK+AL+Q GK Sbjct: 147 IEVNRLFPPGYEEQRAAAKIALAQGLTVLTGGPGTGKTTTVARLLALFAEQAQLAGKARL 206 Query: 185 RIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHR 244 RIALAAPTGKAAARL EAVQ +ID+LD I+++R+ GL ATTLHRLLG RPDTSSRFRHHR Sbjct: 207 RIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLGSRPDTSSRFRHHR 266 Query: 245 ANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGL 304 NRLPHDVIV+DETSMVSLTMMARLLEAVRPQTRL+LVGDPDQLASVEAGAVLADLV+GL Sbjct: 267 GNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADLVDGL 326 Query: 305 GSR---GVAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLR 360 G+R VA L+ HRFGESIG LA+AIR +HIEW++ DP QLR Sbjct: 327 GARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHIEWINAADPTPQLR 386 Query: 361 EVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEP 420 V++PHA+ LR+A LGD ALATLDE RLLCAHRRGP G+ HWN QVQRWL E TGEP Sbjct: 387 NVLLPHALELRRAGALGDTAAALATLDEQRLLCAHRRGPYGIAHWNHQVQRWLTEATGEP 446 Query: 421 LWGSWYVGRPILVTANDYGLKLYNGDTGVVV-------ATPDGMRAVIGDAG---TFATG 470 +W SWY GRP+LVTANDYGL +YNGDTGV V A P +R +I A FAT Sbjct: 447 IWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLKFATS 506 Query: 471 RLTDVETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFYXXXXXXXXXXXXXXXXXX 530 RL+DVETMHAMTIHKSQGSQAD+VTVLLP DSRLLTRELFY Sbjct: 507 RLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPECD 566 Query: 531 XXXXXXXXXXXXTGLRKRLRP 551 TGLR RL+P Sbjct: 567 VRAAIARRAIRATGLRSRLQP 587 >tr|A4T1L4|A4T1L4_MYCGI Tax_Id=350054 SubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Mycobacterium gilvum] Length = 555 Score = 559 bits (1441), Expect = e-157 Identities = 305/513 (59%), Positives = 352/513 (68%), Gaps = 5/513 (0%) Query: 4 LEAFAEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXX 63 L+AFAE+ EPAD+HVAQRLT L + D +V GSVCVDLR+VA QV Sbjct: 3 LDAFAEVFEPADIHVAQRLTELGRDSDPTVALAVALAVRAVRSGSVCVDLRTVAAQV-GV 61 Query: 64 XXXXXXXXXXXXXXXXXXXXGQPPVLRLFGDLLYLDRYWLEEQQVCDDVLALVSARPGGA 123 + V+RL GDLLYLDRYW EE+QV DDV+AL+S+ P A Sbjct: 62 PELPWPDPDGWLSTVGASPLAEHKVVRLDGDLLYLDRYWREEEQVRDDVVALLSSPPRTA 121 Query: 124 VPDVSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPS 183 VP + RLF AG+EEQRAAA+ AL++ G P Sbjct: 122 VPGLERLFPAGWEEQRAAAEAALTRSLTVLTGGPGTGKTTTVARLLAAFAEQAELAGGPP 181 Query: 184 PRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHH 243 PR+ALAAPTGKAAARLQ+AVQ E+D+L ++R RL GL ATT+HRLLG RPDTSSRFRHH Sbjct: 182 PRMALAAPTGKAAARLQDAVQAEVDRLSAVDRARLAGLRATTMHRLLGSRPDTSSRFRHH 241 Query: 244 RANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEG 303 R NRLPHDVIVVDETSMVSLTMMARLLEAVRP TRL+ VGDPDQLASV+AGAVLADLV+G Sbjct: 242 RGNRLPHDVIVVDETSMVSLTMMARLLEAVRPDTRLLFVGDPDQLASVDAGAVLADLVDG 301 Query: 304 LGSRGVAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 LG GV EL TSHRFGE IGALA AIR+ + I W+ +D + LR Sbjct: 302 LGEAGVVELTTSHRFGERIGALALAIRSGDADATVEVLRAGGDAIGWLDTDDAADALRGP 361 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +V A LR+AA+LGD AL LD HRLLCAHRRGP GV HWNRQ++RWL E TG+ +W Sbjct: 362 LVDRAADLREAALLGDGETALRILDGHRLLCAHRRGPFGVAHWNRQIERWLAERTGQSIW 421 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAGT---FATGRLTDVETMH 479 Y GRP+LVTANDYGL +YNGDTGVVVA P+G+RA IG + A GRL +VETM Sbjct: 422 SQPYAGRPLLVTANDYGLGVYNGDTGVVVAAPEGLRAHIGTPASSRELAVGRLGEVETMF 481 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQADEVTVL+P +DSRLLTRELFY Sbjct: 482 AMTIHKSQGSQADEVTVLMPPQDSRLLTRELFY 514 >sp|P96919|EX5A_MYCTU Tax_Id=1773 (recD)RecName: Full=Exodeoxyribonuclease V alpha chain; EC=3.1.11.5; AltName: Full=Exodeoxyribonuclease V 67 kDa polypeptide;[Mycobacterium tuberculosis] Length = 575 Score = 531 bits (1367), Expect = e-148 Identities = 298/513 (58%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW EE+QVC D+LAL+++R VPD Sbjct: 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPD 141 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 532 >tr|Q7U1L1|Q7U1L1_MYCBO Tax_Id=1765 (recD)SubName: Full=PROBABLE EXONUCLEASE V (ALPHA CHAIN) RECD (EXODEOXYRIBONUCLEASE V ALPHA CHAIN) (EXODEOXYRIBONUCLEASE V POLYPEPTIDE); EC=3.1.11.5;[Mycobacterium bovis] Length = 575 Score = 531 bits (1367), Expect = e-148 Identities = 298/513 (58%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW EE+QVC D+LAL+++R VPD Sbjct: 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPD 141 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 532 >tr|C6DU06|C6DU06_MYCTK Tax_Id=478434 SubName: Full=Exonuclease subunit V alpha recD;[Mycobacterium tuberculosis] Length = 575 Score = 531 bits (1367), Expect = e-148 Identities = 298/513 (58%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW EE+QVC D+LAL+++R VPD Sbjct: 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPD 141 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 532 >tr|C1AKW0|C1AKW0_MYCBT Tax_Id=561275 (recD)SubName: Full=Putative exonuclease V alpha chain; EC=3.1.11.5;[Mycobacterium bovis] Length = 575 Score = 531 bits (1367), Expect = e-148 Identities = 298/513 (58%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW EE+QVC D+LAL+++R VPD Sbjct: 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPD 141 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 532 >tr|A5WJZ4|A5WJZ4_MYCTF Tax_Id=336982 SubName: Full=Exonuclease V alpha subunit recD;[Mycobacterium tuberculosis] Length = 575 Score = 531 bits (1367), Expect = e-148 Identities = 298/513 (58%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW EE+QVC D+LAL+++R VPD Sbjct: 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPD 141 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 532 >tr|A5U012|A5U012_MYCTA Tax_Id=419947 (recD)SubName: Full=Putative exonuclease V alpha chain;[Mycobacterium tuberculosis] Length = 575 Score = 531 bits (1367), Expect = e-148 Identities = 298/513 (58%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW EE+QVC D+LAL+++R VPD Sbjct: 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPD 141 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 532 >tr|A1KGA7|A1KGA7_MYCBP Tax_Id=410289 (recD)SubName: Full=Probable exonuclease V (Alpha chain) recD; EC=3.1.11.5;[Mycobacterium bovis] Length = 575 Score = 531 bits (1367), Expect = e-148 Identities = 298/513 (58%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW EE+QVC D+LAL+++R VPD Sbjct: 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPD 141 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 532 >tr|D6FZS6|D6FZS6_MYCTU Tax_Id=478435 SubName: Full=Exonuclease subunit V alpha recD;[Mycobacterium tuberculosis KZN 605] Length = 575 Score = 531 bits (1367), Expect = e-148 Identities = 298/513 (58%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW EE+QVC D+LAL+++R VPD Sbjct: 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPD 141 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 532 >tr|D6FME0|D6FME0_MYCTU Tax_Id=611304 SubName: Full=Exonuclease subunit V alpha recD;[Mycobacterium tuberculosis K85] Length = 575 Score = 531 bits (1367), Expect = e-148 Identities = 298/513 (58%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW EE+QVC D+LAL+++R VPD Sbjct: 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPD 141 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 532 >tr|D6FED5|D6FED5_MYCTU Tax_Id=611303 SubName: Full=Exonuclease subunit V alpha recD;[Mycobacterium tuberculosis CPHL_A] Length = 575 Score = 531 bits (1367), Expect = e-148 Identities = 298/513 (58%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW EE+QVC D+LAL+++R VPD Sbjct: 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPD 141 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 532 >tr|D6F1N9|D6F1N9_MYCTU Tax_Id=611302 SubName: Full=Exodeoxyribonuclease V, alpha subunit;[Mycobacterium tuberculosis T46] Length = 575 Score = 531 bits (1367), Expect = e-148 Identities = 298/513 (58%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW EE+QVC D+LAL+++R VPD Sbjct: 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPD 141 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 532 >tr|D5ZD18|D5ZD18_MYCTU Tax_Id=537210 SubName: Full=Exonuclease subunit V alpha recD;[Mycobacterium tuberculosis T17] Length = 575 Score = 531 bits (1367), Expect = e-148 Identities = 298/513 (58%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW EE+QVC D+LAL+++R VPD Sbjct: 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPD 141 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 532 >tr|D5Z0K9|D5Z0K9_MYCTU Tax_Id=537209 SubName: Full=Exonuclease V (Alpha chain) recD;[Mycobacterium tuberculosis GM 1503] Length = 575 Score = 531 bits (1367), Expect = e-148 Identities = 298/513 (58%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW EE+QVC D+LAL+++R VPD Sbjct: 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPD 141 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 532 >tr|D5YCX0|D5YCX0_MYCTU Tax_Id=520140 SubName: Full=Exonuclease V alpha subunit recD;[Mycobacterium tuberculosis EAS054] Length = 575 Score = 531 bits (1367), Expect = e-148 Identities = 298/513 (58%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW EE+QVC D+LAL+++R VPD Sbjct: 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPD 141 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 532 >tr|A2VFV1|A2VFV1_MYCTU Tax_Id=348776 SubName: Full=Exonuclease V (Alpha chain) recD;[Mycobacterium tuberculosis C] Length = 637 Score = 531 bits (1367), Expect = e-148 Identities = 298/513 (58%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 84 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 143 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW EE+QVC D+LAL+++R VPD Sbjct: 144 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPD 203 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 204 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 263 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 264 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 321 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 322 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 381 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 382 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 441 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 442 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 501 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 502 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 561 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 562 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 594 >tr|D5YNS8|D5YNS8_MYCTU Tax_Id=515616 SubName: Full=Exonuclease subunit V alpha recD;[Mycobacterium tuberculosis 02_1987] Length = 575 Score = 530 bits (1364), Expect = e-148 Identities = 297/513 (57%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW E++QVC D+LAL+++R VPD Sbjct: 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREDEQVCADLLALLTSRRPAGVPD 141 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 532 >tr|D5Y0V2|D5Y0V2_MYCTU Tax_Id=520141 SubName: Full=Exonuclease subunit V alpha;[Mycobacterium tuberculosis T85] Length = 575 Score = 530 bits (1364), Expect = e-148 Identities = 297/513 (57%), Positives = 340/513 (66%), Gaps = 10/513 (1%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L+ +DVHVAQRL LA E D V GSVCVDL S+A Sbjct: 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVPD 126 PPVL L+ D LLYLDRYW E++QVC D+LAL+++R VPD Sbjct: 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREDEQVCADLLALLTSRRPAGVPD 141 Query: 127 VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRI 186 + RLF GF+EQR AA++ALSQ G+P PRI Sbjct: 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 Query: 187 ALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRAN 246 ALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +RFR R N Sbjct: 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 Query: 247 RLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS 306 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLADLV+G Sbjct: 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 Query: 307 RG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREV 362 R VA+L+TSHRFG+ IG LA AIR E IE+V EDP +LR V Sbjct: 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 +VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W Sbjct: 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRLTDVETMH 479 WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL DVETMH Sbjct: 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 Query: 480 AMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 AMTIHKSQGSQ DEVTVL+P EDSRLLTREL Y Sbjct: 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLY 532 >tr|D5P6H2|D5P6H2_9MYCO Tax_Id=525368 (recD2)SubName: Full=Exodeoxyribonuclease V alpha subunit; EC=3.1.11.5; Flags: Fragment;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 351 Score = 452 bits (1162), Expect = e-125 Identities = 235/318 (73%), Positives = 262/318 (82%), Gaps = 7/318 (2%) Query: 202 AVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRANRLPHDVIVVDETSMV 261 AV E+ +LD +R RLTGL ATTLHRLLG RPDTS RF+H+R NRLPHDVIVVDETSMV Sbjct: 1 AVAAEVRRLDAADRARLTGLPATTLHRLLGARPDTSVRFKHNRGNRLPHDVIVVDETSMV 60 Query: 262 SLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGSRG---VAELKTSHRF 318 SLTMMARLLEAVRP TRL+LVGDPDQLASVEAGAVLADLV+GL +R VA L+T HRF Sbjct: 61 SLTMMARLLEAVRPDTRLILVGDPDQLASVEAGAVLADLVDGLTARDDVRVAALRTPHRF 120 Query: 319 GESIGALASAIRTXXXXXXXXXXXXXXEHIEWVHED-PVEQLREVVVPHAMRLRQAAILG 377 GESIGALA AIR EHIEW+ D P ++LR V+VPHA+R+R+AA+LG Sbjct: 121 GESIGALAEAIRVGDADRVLGLLRAGGEHIEWLDSDGPADRLRAVLVPHALRVREAALLG 180 Query: 378 DQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLWGSWYVGRPILVTAND 437 ALATLDEHRLLCAHR+GP GV HWNRQV+RWL EETG+P+ +WY GRP+LVTAND Sbjct: 181 ATEVALATLDEHRLLCAHRQGPYGVSHWNRQVERWLSEETGQPVPSAWYAGRPVLVTAND 240 Query: 438 YGLKLYNGDTGVVVATPDGMRAVI-GDAGT--FATGRLTDVETMHAMTIHKSQGSQADEV 494 YGLK+YNGDTGVVVA PDG+RAVI G AGT FAT RLTD+ETMHAMTIHKSQGSQADEV Sbjct: 241 YGLKVYNGDTGVVVAGPDGLRAVIAGAAGTLGFATSRLTDIETMHAMTIHKSQGSQADEV 300 Query: 495 TVLLPSEDSRLLTRELFY 512 TVL+P EDSRLLTRELFY Sbjct: 301 TVLMPPEDSRLLTRELFY 318 >tr|D2PR46|D2PR46_KRIFD Tax_Id=479435 SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Kribbella flavida] Length = 591 Score = 446 bits (1147), Expect = e-123 Identities = 261/524 (49%), Positives = 314/524 (59%), Gaps = 20/524 (3%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQV--EXXXX 65 A ++ ADVHVA RLT + +E D V GS+C+DL V +V + Sbjct: 26 AGVILAADVHVATRLTTMLEETDERVALACALVARAVRAGSICLDLAEVRDEVGEDGAEL 85 Query: 66 XXXXXXXXXXXXXXXXXXGQPPVLRLFGDLLYLDRYWLEEQQVCDDVLALVSARPGGAVP 125 P L L LY DRYW EE+QV D L + RP + Sbjct: 86 DWPVLDEWLTALRASPLLAAPYPLHLEDTRLYFDRYWREEEQVEQD-LRRRAGRPAPVIA 144 Query: 126 D-------VSRLF-GAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 177 + + RLF G+ + EQRAAA+ A Q Sbjct: 145 NEAVLQAGLGRLFPGSSYVEQRAAAQTAARQWTTVLTGGPGTGKTTTVAGLLALLAEQAE 204 Query: 178 XXGKPSPRIALAAPTGKAAARLQEAVQLEID-QLDLIERRRLTGLHATTLHRLLGPRPDT 236 G SP IAL APTGKAAARL+EAV+ E+ +L + RL HA TLH LLG RPD+ Sbjct: 205 IAGDRSPWIALTAPTGKAAARLEEAVRREMSGRLSAEDTARLGDFHARTLHMLLGRRPDS 264 Query: 237 SSRFRHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAV 296 SSRFRH R NRLPHD++VVDETSMVSLTMMARLLEAVRP RL+LVGDPDQLAS+EAGAV Sbjct: 265 SSRFRHDRDNRLPHDIVVVDETSMVSLTMMARLLEAVRPGARLILVGDPDQLASIEAGAV 324 Query: 297 LADLVEGLGSRG---VAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVHE 353 LADLV+GL + G AEL+TSHRFG IGALA A+R + + +V + Sbjct: 325 LADLVDGLVAGGHIAAAELRTSHRFGSEIGALALAVREDRPDNVLAVLRGGGDRVHFVED 384 Query: 354 D-PVEQLREVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRW 412 D P E LR ++P + +R AA GD ALA LD HRLLCAHR GP GV HWNR V+RW Sbjct: 385 DDPRETLRSALLPDVLAIRDAAEAGDADAALAALDRHRLLCAHREGPWGVQHWNRTVERW 444 Query: 413 LGEETGEPLWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG----TFA 468 + EET +PLW +WYVGRP+LVTANDY L +YNGD GV + PDG V D+ FA Sbjct: 445 ITEETEDPLWDTWYVGRPVLVTANDYALGIYNGDVGVTIRRPDGSLRVCIDSSRGRLDFA 504 Query: 469 TGRLTDVETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 RL ++ET+HAMTIHK+QGSQA EVTVL+P+E+SRLLTRELFY Sbjct: 505 PSRLGNIETLHAMTIHKAQGSQAAEVTVLMPNEESRLLTRELFY 548 >tr|A1SDB3|A1SDB3_NOCSJ Tax_Id=196162 SubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Nocardioides sp.] Length = 584 Score = 343 bits (881), Expect = 3e-92 Identities = 226/523 (43%), Positives = 277/523 (52%), Gaps = 25/523 (4%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXX 67 A +L +DVHVA R+ VL E D + GSVC+DL VA Sbjct: 29 AGVLTSSDVHVATRIGVLGGETDERMLLAVALTVRAVRRGSVCLDLAGVAATAPDLPWPD 88 Query: 68 XXXXXXXXXXXXXXXXGQPPVLRLFGDLLYLDRYWLEEQQVCDDVLALVSARPGGAVPD- 126 V+R +LLYLDRY E+QV DD+ A ++ P Sbjct: 89 EWPVAGSPLVHAG-------VVRWDHELLYLDRYHRLERQVHDDLAARLALAPPAVDEQR 141 Query: 127 ----VSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKP 182 ++RL G F E++ AA VA + Sbjct: 142 LEAALARLGGGHFSEEQRAAVVAAVRRRTTILTGGPGTGKTTTVARLLALLADQAAGRGS 201 Query: 183 SPRIALAAPTGKAAARLQEAVQLEIDQLDLI--ERRRLTG-LHATTLHRLLGPRPDTSSR 239 IALAAPTGKAA RLQEAV E+ + E L G L TLHRLLG RPD ++R Sbjct: 202 RLSIALAAPTGKAATRLQEAVVTELAAVATAWPEAPALVGRLDGLTLHRLLGWRPDNATR 261 Query: 240 FRHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLAD 299 FRH RANRL +DV+VVDE+SMV LTMM RLLEA+RP +RLVLVGDP QL SV AGAVL+D Sbjct: 262 FRHDRANRLKYDVVVVDESSMVELTMMGRLLEALRPDSRLVLVGDPQQLTSVGAGAVLSD 321 Query: 300 LVEGLGSR---GVAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVHEDPV 356 LV G R VA L T+ R E I +LA+A+R+ E + WV Sbjct: 322 LVAGYEGRPDSPVAALSTNFRSEEDIKSLAAALRSGDADEVIAVLRAPSEQVSWVETSDA 381 Query: 357 EQLREVVVPHAMRLRQAAILG----DQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRW 412 ++ + P ++ +A D ALA LD +RLLCAHR G GV WN V+RW Sbjct: 382 AEVEAALRPDSLASARAVWAAARDEDAERALAELDRYRLLCAHREGLYGVRRWNHLVERW 441 Query: 413 LGEETGEPLWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDA---GTFAT 469 L E+ ++ WYVGRP+LVT+NDY L +YNG++GVVV R + + FA Sbjct: 442 LAEDPDVEIYDEWYVGRPLLVTSNDYALDVYNGESGVVVRQDQRRRVFVAGSERLKEFAP 501 Query: 470 GRLTDVETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 GRL VETMHAMTIHKSQGSQAD V+VLLP E SRLLT ELFY Sbjct: 502 GRLEAVETMHAMTIHKSQGSQADRVSVLLPDEGSRLLTLELFY 544 >tr|D3FF75|D3FF75_CONWI Tax_Id=469383 SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Conexibacter woesei] Length = 616 Score = 335 bits (860), Expect = 8e-90 Identities = 226/551 (41%), Positives = 277/551 (50%), Gaps = 41/551 (7%) Query: 2 SLLEAF--AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQ 59 +LL AF A +L ADV VA+RL L D DA + G V VDL ++ Sbjct: 20 ALLRAFNDAGVLSIADVQVARRLAALGDVADAELLLAFALAARAPRLGHVLVDLATIRAT 79 Query: 60 V----------------EXXXXXXXXXXXXXXXXXXXXXXGQPPVLRLFGDLLYLDRYWL 103 V E P LRL G LYLDRYW Sbjct: 80 VAVDTEERIDLDALPWPETGAWVAALAGCALVGVGDEDGADTTP-LRLVGTALYLDRYWR 138 Query: 104 EEQQVCDDVLALVSARPGG----AVPDVSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXX 159 EE+QV D+ + A P G A+ + QR A A + Sbjct: 139 EERQVAADLRGRLEALPAGVDEAALTARLKRLAPDDARQRNAIAAAAVRRFATVAGGPGT 198 Query: 160 XXXXXXXXXXXXXXXXXXXXGKPSPRIALAAPTGKAAARLQEAVQLEIDQLDLIE--RRR 217 G+P P IALAAPTGKAAARL+E V QLD R + Sbjct: 199 GKTTTVAQIAALVVEQARAEGRPVPLIALAAPTGKAAARLEEQVHHRAAQLDTTPDVREQ 258 Query: 218 LTGLHATTLHRLLGPRPDTSSRFRHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQT 277 L GL A+TLHRLLG RP + SRFRH R RLPHD+++VDE SMVSLT+MARLLEAVRP Sbjct: 259 LAGLRASTLHRLLGWRPGSHSRFRHDRHARLPHDMVIVDEASMVSLTLMARLLEAVRPDA 318 Query: 278 RLVLVGDPDQLASVEAGAVLADLVEGL-GSRGVAELKTSHRFGESIGALASAIRTXXXXX 336 RLVLVGDPDQLAS+EAGAVL D+V G+ +L+ +RFG IGA+++A+R Sbjct: 319 RLVLVGDPDQLASIEAGAVLGDIVRAARPGAGIVQLERVYRFGAGIGAVSAAVRAGDADA 378 Query: 337 XXXXXXXXXEHIEWVHEDP----------VEQLREVVVPHAMRLRQAAILGDQREALATL 386 + W+ D + +R+ + AA+ GD R AL L Sbjct: 379 LVAALVSAPAEVTWIPIDAGDPATATAAVLAPVRDAATRAGREVIAAALGGDGRAALDAL 438 Query: 387 DEHRLLCAHRRGPAGVDHWNRQVQRWL-GEETGEPLWGSWYVGRPILVTANDYGLKLYNG 445 RLLCAHRRGP GV W V+ WL G+ W Y GRP+L+TANDY L L+NG Sbjct: 439 GAFRLLCAHRRGPHGVTTWMPLVEGWLAGDIAATGTWARDYPGRPLLITANDYDLDLFNG 498 Query: 446 DTGVVVATPDGMRAVI----GDAGTFATGRLTDVETMHAMTIHKSQGSQADEVTVLLPSE 501 DTGVVVA+P G G+ RL V+T+HAMTIHKSQGSQ V++P+ Sbjct: 499 DTGVVVASPSGGLTAAFERRGEIVAVRPARLRAVDTVHAMTIHKSQGSQFGTAAVVVPAA 558 Query: 502 DSRLLTRELFY 512 DSR+LTREL Y Sbjct: 559 DSRILTRELLY 569 >tr|Q5YWP7|Q5YWP7_NOCFA Tax_Id=37329 (recD)SubName: Full=Putative RecD protein;[Nocardia farcinica] Length = 628 Score = 293 bits (750), Expect = 4e-77 Identities = 225/583 (38%), Positives = 280/583 (48%), Gaps = 79/583 (13%) Query: 3 LLEAFAE--ILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSV---- 56 LL F E +L ADVHVA RL L E V GSVC++L + Sbjct: 13 LLRTFNEAGVLSAADVHVAVRLGRLGREESELVLFAAALAVRAVRSGSVCLELHRMREIG 72 Query: 57 ----------AGQVEXXXXXXXXXXXXXXXXXXXXXXGQP-----PVLRLFGD---LLYL 98 G G P P+ + GD LLYL Sbjct: 73 VDADESWDAGTGIDPASLPWPDVEAVIAALRVSPLVCGGPAGPLCPLRVVPGDDGPLLYL 132 Query: 99 DRYWLEEQQVCDDVLALVSARP--GGAVP--DVSRLFGAGFE----EQRAAAKVALSQXX 150 DRY+ +EQ + + ++ P A+ ++ RLFGA + QR AA +A + Sbjct: 133 DRYFRQEQTIRRVLTERAASHPRVNAAIVRRELDRLFGADHDGAPDRQRLAAALAATHWT 192 Query: 151 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSP-RIALAAPTGKAAARLQEAVQLEIDQ 209 K P RIALAAPTGKAAARLQEAV+ + + Sbjct: 193 TVVAGGPGTGKTHTIARILALLDAHRRADPKAPPLRIALAAPTGKAAARLQEAVREQAGE 252 Query: 210 LDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRANRLPHDVIVVDETSMVSLTMMARL 269 L L E L A TLHRLLG + +RFRH+ NRLP+DVIVVDETSMVSLTMM+ L Sbjct: 253 LGLPE------LSAATLHRLLGWQRGRRTRFRHNEFNRLPYDVIVVDETSMVSLTMMSSL 306 Query: 270 LEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEG--LGS--------------------- 306 L A+RP TRLVLVGDPDQLASV+AGAVLADLV G LG+ Sbjct: 307 LAALRPDTRLVLVGDPDQLASVDAGAVLADLVAGPVLGTPNPELDRILGGPPPDLAAHPE 366 Query: 307 -----------RGVAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVHEDP 355 G+ L RFG I LA A+R + + D Sbjct: 367 GLTALERTRLRSGIVRLTRGRRFGGRIAELAVAVRAGDADRALHLLHTGGDDLSLCAPDD 426 Query: 356 VEQLREVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGE 415 V +R VV A + AA GD AL L+ HRLLCAHR+GP GV+ W+R W Sbjct: 427 VATVRADVVRAARTVTAAAQAGDATGALTALESHRLLCAHRQGPFGVERWDRLAGEWAAA 486 Query: 416 ETGEP--LWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDG-MRAVI---GDAGTFAT 469 P SWY G+P+LVTAND+ ++YNGDTGV+VA PDG +RA + + Sbjct: 487 AGAGPDSAQSSWYPGQPLLVTANDHEARIYNGDTGVIVAMPDGSLRAALQRGSEPYLVHP 546 Query: 470 GRLTDVETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 + V T+ AMTIH+SQGSQ D V+++LP +S LLTREL Y Sbjct: 547 TQFPAVVTVFAMTIHRSQGSQYDTVSIVLPEPESTLLTRELLY 589 >tr|A6W6P3|A6W6P3_KINRD Tax_Id=266940 SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Kineococcus radiotolerans] Length = 634 Score = 285 bits (728), Expect = 2e-74 Identities = 223/556 (40%), Positives = 275/556 (49%), Gaps = 60/556 (10%) Query: 10 ILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAG-----QVEXXX 64 +L ADVHVA+RL + E D V GSV + LR V VE Sbjct: 47 LLHAADVHVARRLGAVTGEDDERVLLAVALAVRAVRHGSVVLHLRQVPETVVPEDVEDSG 106 Query: 65 XXXXXXXXXXXXXXXXXXXGQPPVL---------------RLFGDLLYLDRYWLEEQQVC 109 + P+L L GD L+LDRYW +E V Sbjct: 107 AVGTVAVRWPDPEEWLAALRRSPLLVEHAPGETTGPAAPLHLVGDGLWLDRYWRQELAVA 166 Query: 110 DDVLALVSARPG---GAVPDV-SRLFGAGF-EEQRAAAKVALSQXXXXXXXXXXXXXXXX 164 +D+ A +A G AV V RL+ G ++QR AA V L+ Sbjct: 167 EDLRARSAAVAGYDPAAVDAVLDRLWPGGLADDQRTAAAVCLAHGVSVLGGGPGTGKTTT 226 Query: 165 XXXXXXXXXXXXXXXGKPSPRIALAAPTGKAAARLQEAV--QLEIDQLDLIERRRLTGLH 222 PR+ALAAPTGKAAARL EAV D ERR L Sbjct: 227 VARLLAAVHALSPGP----PRVALAAPTGKAAARLTEAVVSAAGTDGFTDDERRFLRSTT 282 Query: 223 ATTLHRLLGPRPDTSSRFRHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLV 282 A+TLHRLLG RP S R R+ +RLPHDV++VDE SMV L +MARLL A+RP RLVLV Sbjct: 283 ASTLHRLLGIRPG-SVRARYDAEHRLPHDVVIVDEASMVGLGVMARLLAALRPGARLVLV 341 Query: 283 GDPDQLASVEAGAVLADLVEGLG----------SRGVAELKTSHRFGE--SIGALASAIR 330 GDP QLASVE GAVLADLV GVA L+ +HRF + I A+A+A+R Sbjct: 342 GDPQQLASVEVGAVLADLVAPAERAAPGAAPAVPHGVALLRRTHRFADRGGIAAIAAAVR 401 Query: 331 TXXXXXXXXXXXXXXEHIEWVHEDPVEQL---------REVVVPHAMRLRQAAILGDQRE 381 +E++ E P E+L R V+ + + +AA GD Sbjct: 402 RGAAEEVVDLLRAGGPDVEFL-EVPDEELVAGAALEAVRAEVLRRSAAVVEAARAGDAAA 460 Query: 382 ALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETG-EPLWGSWYVGRPILVTANDYGL 440 AL LD HR LCAHRRG GV HW+ QRW E+ G +P YVG P++VTAND G+ Sbjct: 461 ALTALDAHRTLCAHRRGTRGVSHWSALAQRWAVEDLGVQPRTDGRYVGLPVIVTANDPGV 520 Query: 441 KLYNGDTGVVVATPDG--MRAVIGDAGTFAT--GRLTDVETMHAMTIHKSQGSQADEVTV 496 ++NGDTGVV+ DG + A+ AG RL VE +HAMT+H+SQGSQ D VTV Sbjct: 521 GVFNGDTGVVL-DRDGTLVAAIARGAGPLLVPLARLAAVEPVHAMTVHRSQGSQFDVVTV 579 Query: 497 LLPSEDSRLLTRELFY 512 L E S L TRE+FY Sbjct: 580 LAAPERSPLATREMFY 595 >tr|D5UHJ9|D5UHJ9_9CELL Tax_Id=446466 SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Cellulomonas flavigena DSM 20109] Length = 647 Score = 276 bits (706), Expect = 6e-72 Identities = 220/584 (37%), Positives = 265/584 (45%), Gaps = 77/584 (13%) Query: 3 LLEAFAE--ILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQV 60 LL FA+ +L ADV VA+RL L E D +V GSVCVDL V Sbjct: 30 LLTTFADAGVLTSADVRVAERLGDLTGEDDPTVHLAAALAVRAVRAGSVCVDLADAPSLV 89 Query: 61 EXXXXXXXXXXXXXXXXXXXXXXGQPPVLRLFGDL------------------LYLDRYW 102 +R G + +YLDRYW Sbjct: 90 AEGSPDDPDAPLPAGTLPWPDTAAWTAAVRGSGMVADGVDGPADRPVRWVDGRVYLDRYW 149 Query: 103 LEEQQVCDDVLALVSARPGGAVPDVSRLFGAGFEE-QRAAAKVALSQXXXXXXXXXXXXX 161 +EQ V DV A +++ + R A F Q A +VA + Sbjct: 150 RDEQVVRRDVDARLTSLLDVDDDALRRAVHARFPRAQDARQRVAAATAAVSRLTVLTGGP 209 Query: 162 XXXXXXXXXXXXXXXXXXGKPSPRIALAAPTGKAAARLQEAVQLEIDQLD-------LIE 214 P RIALAAPTGKAA RLQEAV E+ +LD + Sbjct: 210 GTGKTTTVARLVAVLRDVAGPGLRIALAAPTGKAATRLQEAVNAELARLDDAAVGGTVAA 269 Query: 215 RRRLTGLHATTLHRLLGPRPDTSSRFRHHRANRLPHDVIVVDETSMVSLTMMARLLEAVR 274 L A+T+HRLLG RP +S+RF H A+RLPHDV+V+DE SMVSL ++AR+L+A+R Sbjct: 270 PGAARPLTASTIHRLLGWRP-SSTRFAHDHAHRLPHDVVVLDEASMVSLPLLARVLDALR 328 Query: 275 PQTRLVLVGDPDQLASVEAGAVLADLVEG------LGSR--------------------- 307 P RLVLVGDPDQLASVE GAVL DLV L +R Sbjct: 329 PDARLVLVGDPDQLASVEVGAVLGDLVARPTRSGPLPARLAALLPDDVPGTATSADDTRD 388 Query: 308 ------GVAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVH-------ED 354 GV L +HRFG + LA A+R H V ED Sbjct: 389 AAALHGGVVRLVVTHRFGHELAELADAVRRGDADATLALLRAGGAHASLVEPAAEVPTED 448 Query: 355 PVEQLREVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLG 414 V LR V RL AA GD AL L HRLL AHRRGPAGV W QRW+ Sbjct: 449 EVPGLRGDVSATGARLVAAARAGDTAGALEALGVHRLLLAHRRGPAGVARWAALAQRWVE 508 Query: 415 EETGEPLWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG------TFA 468 + G+ G +GRP+LVT ND L NGD GV+V+ DG V+ G Sbjct: 509 KTVGDLQPGPLSLGRPLLVTVNDRTTGLSNGDIGVLVS--DGAGGVVAAFGESHAPRLVR 566 Query: 469 TGRLTDVETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 RL VET+HAMT+H++QGSQ VTVLLP S LLTREL Y Sbjct: 567 PHRLPAVETVHAMTVHRAQGSQFTFVTVLLPPASSPLLTRELLY 610 >tr|D5XQQ4|D5XQQ4_MYCTU Tax_Id=515617 SubName: Full=Exonuclease V alpha subunit recD; Flags: Fragment;[Mycobacterium tuberculosis T92] Length = 228 Score = 275 bits (703), Expect = 1e-71 Identities = 147/228 (64%), Positives = 167/228 (73%), Gaps = 6/228 (2%) Query: 209 QLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRANRLPHDVIVVDETSMVSLTMMAR 268 +LD +R RL LHA TLHRLLG +P +RFR R NRLPH+VIVVDETSMVSLT+MAR Sbjct: 3 KLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQNRLPHNVIVVDETSMVSLTLMAR 60 Query: 269 LLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGSRG---VAELKTSHRFGESIGAL 325 L EAVRP RL+LVGD DQLASVEAGAVLADLV+G R VA+L+TSHRFG+ IG L Sbjct: 61 LAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTL 120 Query: 326 ASAIRTXXXXXXXXXXXXXXEHIEWVH-EDPVEQLREVVVPHAMRLRQAAILGDQREALA 384 A AIR E IE+V EDP +LR V+VPHA+RLR+AA+LG ALA Sbjct: 121 AEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALA 180 Query: 385 TLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLWGSWYVGRPIL 432 TLDEHRLLCAHR GP GV HWNR+VQ WL EETG+P W WY GRP+L Sbjct: 181 TLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPWTPWYAGRPLL 228 >tr|D0L8X2|D0L8X2_GORB4 Tax_Id=526226 SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Gordonia bronchialis] Length = 641 Score = 253 bits (647), Expect = 4e-65 Identities = 199/578 (34%), Positives = 264/578 (45%), Gaps = 83/578 (14%) Query: 8 AEILEPADVHVAQRLTVLADEPDASVEXXXXXXXXXXXG-GSVCV------DLRSVAGQV 60 A +L ADVHV RLT + EP + + GS C+ D+ + Q Sbjct: 31 AGVLAAADVHVTDRLTRMCGEPLSDLALLGTALAVRAVRLGSTCLALDRIGDIPGLPDQP 90 Query: 61 EXXXXXXXXXXXXXXXXXXXXXXGQPPVLRLF------GDLLYLDRYWLEEQQVCDDVLA 114 + G P+ L G LLYL +Y+ +E+ + VLA Sbjct: 91 DLVLPAPAELLSELRRCPLVVGTGAGPLRPLMLMGSDDGPLLYLQKYFRQEETI-RTVLA 149 Query: 115 LVSARPGGAVPD-----VSRLFG-----AGFEEQRAAAKVALSQXXXXXXXXXXXXXXXX 164 +A PD + +FG + QR AA V S+ Sbjct: 150 ARAATSPQVDPDRLRSAIDTVFGDVTSSETVDLQRLAAAVVASRWTTVLAGGPGTGKTYT 209 Query: 165 XXXXXXXXXXXXXXXGKPSPRIALAAPTGKAAARLQEAVQLEIDQ-LDLIERRRLTGLHA 223 S R+ L APTG+AAA+LQ +V LD LHA Sbjct: 210 VARILAVLQIVHGG----SLRVGLCAPTGRAAAQLQASVSPGGSAGLDPTLITGAGALHA 265 Query: 224 TTLHRLLGPRPDTSSRFRHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVG 283 T+H LLG P ++ RF R + LPHDVIVVDETSM+S+T M+R+L+A RP R++ VG Sbjct: 266 VTVHSLLGWYPGSNPRFG--RGHTLPHDVIVVDETSMLSMTAMSRVLDAARPDARVIFVG 323 Query: 284 DPDQLASVEAGAVLADLVE-----------------------GLG--------------- 305 DP QLASV+AGAVLADLVE G+G Sbjct: 324 DPHQLASVDAGAVLADLVERTDTDPGPAAGESAHASIALQAAGIGPERVSAEAIGPGEAA 383 Query: 306 --SRGVAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXX-EHIEWVHEDPVEQLREV 362 SRGV L+ +RFG I A+A+A+ IE + D ++ R Sbjct: 384 RISRGVITLRREYRFGGGIAAVAAAVNAGDATRVIDLLTDPDVSDIELIAPDNIDATRPD 443 Query: 363 VVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLW 422 V LR AA+ D A+ LD HR+LCAHR G GV W+R+V WLG + P Sbjct: 444 VTAWGRELRTAALACDAHAAVEALDSHRVLCAHREGYWGVRGWSRRVAEWLGHDADRP-- 501 Query: 423 GSWYVGRPILVTANDYGLKLYNGDTGVVV-----ATPDGMRAVI---GDAGTFATGRLTD 474 W+ G+PILVTAND + +NGDTGV++ PD +R G+ +L + Sbjct: 502 -GWFAGQPILVTANDRQTRTFNGDTGVIIRDPHSGDPDDLRVAFRRGGEVRLLRRTQLAE 560 Query: 475 VETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 + T++AMTIH+SQGSQ D VTV+LP S LLTREL Y Sbjct: 561 ISTVYAMTIHRSQGSQFDRVTVVLPPSGSELLTRELLY 598 >tr|A4VRQ4|A4VRQ4_PSEU5 Tax_Id=379731 (recD)SubName: Full=Exodeoxyribonuclease V alpha chain;[Pseudomonas stutzeri] Length = 616 Score = 210 bits (535), Expect = 4e-52 Identities = 176/504 (34%), Positives = 220/504 (43%), Gaps = 43/504 (8%) Query: 89 LRLFGDLLYLDRYWLEEQQVCDDVLALVSARP----GGAVPDVSRLFGAGFEE---QRAA 141 L L GD LYL RY EQQ+ + +LA P ++RLF + QR A Sbjct: 91 LTLVGDRLYLARYQAYEQQLAEQLLARTGDAPEVDEARLAESLARLFAFNQQRPDWQRLA 150 Query: 142 AKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRIALAAPTGKAAARLQE 201 A A+ + G I LAAPTGKAAAR+ E Sbjct: 151 AAQAVRRRLAVISGGPGTGKTTTVVRLLAALLEQP---GGERLAIGLAAPTGKAAARMAE 207 Query: 202 AVQLEIDQLDLIER-RRLTGLHATTLHRLLGPRPDTSSRFRHHRANRLPHDVIVVDETSM 260 A++ +L + + + A TLHRLLG R D S R RH AN L DV+VVDE SM Sbjct: 208 AIRNAKAELPVSDAVKEALPDEARTLHRLLGSRGD-SPRVRHDAANPLALDVLVVDEASM 266 Query: 261 VSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLG--------------- 305 V L +MA+L+ A+ P+ RL+L+GD DQLA+VEAGAV A+L EG G Sbjct: 267 VDLALMAKLVAALPPKARLILLGDKDQLAAVEAGAVFAELCEGRGFDAGAASELERITGQ 326 Query: 306 -----------SRGVAELKTSHRF-GES-IGALASAIRTXXXXXXXXXXXXXXEHIEWVH 352 V L SHRF G+S IG LA I + W Sbjct: 327 PVPVETPRSRLGDAVVLLTHSHRFAGDSGIGELARRINAGDAKGTVALLQEGRADLAWNA 386 Query: 353 EDPVEQLREVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRW 412 L E + QAA GD A + R L A R GP GV N ++ Sbjct: 387 TPSPTALIERLEQGYGGYLQAARQGDPGAAFEAFNGFRALTAQREGPFGVTGINEALETR 446 Query: 413 LGEETGEPLWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVI-GDAG--TFAT 469 G P WY GR ++V NDY L L+NGD G+ + T G+R GD G FA Sbjct: 447 FRRRLGVPARERWYPGRAVMVRQNDYALGLFNGDVGLCLKTEQGLRVFFEGDDGYRGFAP 506 Query: 470 GRLTDVETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFYXXXXXXXXXXXXXXXXX 529 RL ++ AMT+HKSQGS+ EV + LP + S LLTR LFY Sbjct: 507 ARLPSHDSAFAMTVHKSQGSEFAEVLLALPDQPSPLLTRALFYTGITRAKRRVEIWALPA 566 Query: 530 XXXXXXXXXXXXXTGLRKRLRPAG 553 GL +RL PAG Sbjct: 567 RLAEAVSTRAERAAGLAERLVPAG 590 >tr|C1ACJ0|C1ACJ0_GEMAT Tax_Id=379066 (recD)SubName: Full=Exodeoxyribonuclease V alpha subunit;[Gemmatimonas aurantiaca] Length = 579 Score = 207 bits (526), Expect = 4e-51 Identities = 167/451 (37%), Positives = 214/451 (47%), Gaps = 37/451 (8%) Query: 87 PVLRLFGDLLYLDRYWLEEQQVCDDVLALVS-ARPGGAVPDVSRLFGAGF-------EEQ 138 P+ L G LYL RY E ++ + ++ A P A+PD R F A F + Q Sbjct: 97 PLFVLEGTRLYLLRYHRAEVRLAEAIVHRAQQATPVEALPDTPR-FHALFPAVDGVVDWQ 155 Query: 139 RAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRIALAAPTGKAAAR 198 AA AL+ P+ ALAAPTG+AAAR Sbjct: 156 ARAAATALASPLVFVTGGPGTGKTTVAARLLALLLHRD-----PTLTFALAAPTGRAAAR 210 Query: 199 LQEAVQLEIDQLDLIERR-RLTGLHATTLHRLLGPRPDTSSRFRHHRANRLPHDVIVVDE 257 L EA+ + L E L G+ TLHRLLG T RFRHH L DV++VDE Sbjct: 211 LSEAIGAAALRDALHELAPSLPGVSGKTLHRLLGYHTATQ-RFRHHAQRPLAEDVVIVDE 269 Query: 258 TSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS--------RGV 309 SM+ + MM L A++P RL+++GDPDQLASV+ G VL D+ R V Sbjct: 270 ASMIDVLMMDALFAALKPSARLIVLGDPDQLASVDTGFVLGDVTRAAHDAVKSSAIRRSV 329 Query: 310 AELKTSHRFGE--SIGALASAIRT-XXXXXXXXXXXXXXEHIEWVHEDPVEQLREVVVPH 366 L S RFG+ IG LA A R + W + P +E++ P Sbjct: 330 VRLAYSWRFGQQVGIGLLAEATRVGESQQAMRALQDTALTDVAW--QLPHRSAQELLAPV 387 Query: 367 AMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLWGSWY 426 ++ ALA L R+LCA R GP GV N + WL + G + G WY Sbjct: 388 EPHVQAFLATDTPVAALAALARFRVLCALRDGPGGVTGLNALTEGWL-QRQGRAVMG-WY 445 Query: 427 VGRPILVTANDYGLKLYNGDTGVVVATPDGMRAV-----IGDAGTFATGRLTDVETMHAM 481 RP+LVTAND +LYNGD GV +A DG+ V G +F +L ET AM Sbjct: 446 DHRPVLVTANDAATQLYNGDVGVTLAI-DGVPMVHFPASDGGVRSFMPSQLPAHETAWAM 504 Query: 482 TIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 T+HKSQGS+ D V V+LP DSR+LTREL Y Sbjct: 505 TVHKSQGSEFDHVLVVLPEADSRVLTRELLY 535 >tr|C8R0E5|C8R0E5_9DELT Tax_Id=589865 SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Desulfurivibrio alkaliphilus AHT2] Length = 635 Score = 207 bits (526), Expect = 4e-51 Identities = 166/480 (34%), Positives = 221/480 (46%), Gaps = 70/480 (14%) Query: 89 LRLFGDLLYLDRYWLEEQQVCDDVLALVSARPGGAVPDVSRL------FGAGFE---EQR 139 L L + LYL RYW E + D++ A P P+V+ AG E +Q+ Sbjct: 121 LVLSDNRLYLRRYWQYEMALADEIRARAVRVPAPPAPEVAAARLAELATAAGVELDQDQQ 180 Query: 140 AAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSP-RIALAAPTGKAAAR 198 AA AL+ G+ S R+ L APTGKA AR Sbjct: 181 AAVLGALNHYLTVISGGPGTGKTTIIFFILTLLTQMAREEGQGSDLRVLLLAPTGKATAR 240 Query: 199 LQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHRANRLPHDVIVVDET 258 L E + R R A T+HR LG + + + FRH+R+N L D++VVDE Sbjct: 241 LAETL-----------RERAAEFSAMTIHRALGYQSCSPTIFRHNRSNPLAADLVVVDEA 289 Query: 259 SMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGS------------ 306 SMV L +M++L AV P+ RLVL+GD DQLASVEAG++L D+ Sbjct: 290 SMVDLALMSKLFAAVSPRARLVLLGDKDQLASVEAGSILGDICLAAPQLDSAVIELSREF 349 Query: 307 -----RGVAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEWVHEDPVEQ--L 359 RG+ L + GE LA +R + P E L Sbjct: 350 RFDPRRGIGALVRGIKAGEPATVLAVPVRVDGAQNDDPKGPPAEVTLSDQPGAPAENPTL 409 Query: 360 REVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWN---RQVQRW---L 413 RE+V+ QA+ EALA +++ RLLCAHRRGP GV+ N RQ+ R L Sbjct: 410 RELVLAGFRPCLQAS---SPAEALARMNDFRLLCAHRRGPYGVEQLNSFCRQLLRAEGVL 466 Query: 414 GEETGEPLWGS--------------WYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRA 459 GE G G +Y G+P+LV AN Y +L+NGD G++ +PD Sbjct: 467 GEAAGRGAMGKEARGPADGLAPEGDYYRGQPVLVVANSYESRLFNGDLGIIWPSPDDAGQ 526 Query: 460 VI-------GDAGTFATGRLTDVETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 ++ G GRL ET AMTIHKSQGS+ ++V V+LP EDS LL+REL Y Sbjct: 527 LMAFFPSAQGAPRMLPPGRLPRHETAFAMTIHKSQGSEFNQVAVVLPPEDSPLLSRELLY 586 >tr|Q6ANK0|Q6ANK0_DESPS Tax_Id=84980 SubName: Full=Related to exodeoxyribonuclease V, alpha chain;[Desulfotalea psychrophila] Length = 527 Score = 206 bits (524), Expect = 7e-51 Identities = 134/340 (39%), Positives = 197/340 (57%), Gaps = 27/340 (7%) Query: 186 IALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGL---HATTLHRLLGPRPDTSSRFRH 242 +ALAAPTGKAA RL E++ D+L RR + A TLHRLLG + + S+RFRH Sbjct: 176 VALAAPTGKAAQRLYESILGGADRLPEQLRRDVGEWLPEKAVTLHRLLGTQLN-STRFRH 234 Query: 243 HRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVE 302 +R N L D++++DE SM+ L MM++L++A++P RL+L+GD DQLASVE+G VLA ++ Sbjct: 235 NRENPLGWDLVLLDEASMIDLAMMSKLVDALKPGGRLILLGDKDQLASVESGTVLATVIS 294 Query: 303 GLGSRGVAELKTSHRFGESIGALASAIRTXXXXXXXXXXXXXXEHIEW--VHEDPVEQLR 360 GL +R A+L ++RF + I A+A A H W + + VE + Sbjct: 295 GL-ARCSAQLIKTYRFNDEIKAIAIATNAGNG------------HRAWQLLEKRAVEDWQ 341 Query: 361 EVVVPHAMRLRQAAIL---GDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEET 417 + + + + + +A A+L + +LC RRG V+ N+ V+ L + Sbjct: 342 AYIEGNYRKYISSVQMLSGSGAEDAFASLKKFMVLCGTRRGRRAVEGINQMVEEDLLRQG 401 Query: 418 GEPLWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAGT-----FATGRL 472 SWY+GRPIL++ NDY L LYNGD G+ + DGM V + G+ F L Sbjct: 402 LRGSNSSWYIGRPILISQNDYNLGLYNGDIGICLPDEDGMLKVWFETGSGTFIRFLPVAL 461 Query: 473 TDVETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 +D +T+ AMT+HKSQGS+ EV ++LP ED+ +L REL Y Sbjct: 462 SDYDTVFAMTVHKSQGSEFTEVMMVLPIEDNPVLCRELIY 501 >tr|C9XZJ2|C9XZJ2_CROTZ Tax_Id=413502 (recD)SubName: Full=Exodeoxyribonuclease V alpha chain; EC=3.1.11.5;[Cronobacter turicensis] Length = 611 Score = 206 bits (524), Expect = 7e-51 Identities = 163/480 (33%), Positives = 223/480 (46%), Gaps = 61/480 (12%) Query: 86 PPVLRLFGDLLYLDRYWLEEQQV------CDDVLALVSARPGGAVPDVSRLFGAGFEE-- 137 P L+L GD LYL+R W E V C+ + L AR + + LFG +E Sbjct: 101 PTPLKLIGDRLYLNRMWRHEMAVASFFRECNHRIELEEARLSSVL---AALFGPPGDEVD 157 Query: 138 -QRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRIALAAPTGKAA 196 Q+ AA VAL++ + PRI LAAPTGKAA Sbjct: 158 WQKVAAAVALTRRIAVISGGPGTGKTTTVAKLLAAMVQLCD---EKLPRIRLAAPTGKAA 214 Query: 197 ARLQEAVQLEIDQLDLIE-RRRLTGLHATTLHRLLGPRPDTSSRFRHHRANRLPHDVIVV 255 ARL E++ + +L L + ++ A+TLHRLLG +P S R R+H N L DV+VV Sbjct: 215 ARLTESLGAALRRLPLSDAQKNALPEEASTLHRLLGAQPG-SQRLRYHEGNPLHLDVLVV 273 Query: 256 DETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGSRGVAE---- 311 DE SM+ L MMARL+ A+ R++ +GD DQLASVEAGAVL D+ + AE Sbjct: 274 DEASMIDLPMMARLIAALPEHARVIFLGDRDQLASVEAGAVLGDICHYVNHGFTAERAAE 333 Query: 312 --------------------------LKTSHRFG--ESIGALASAIRTXXXXXXXXXXXX 343 L+ S+RFG IG LA A+ Sbjct: 334 LGRITGCNIGGGEPHPAGALRDCLCLLQKSYRFGSDSGIGQLAFAVNRSDHRAASATFSR 393 Query: 344 XXEHIEWV----HEDPVEQLREVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGP 399 E I ++D + + E + + L + LA E ++LCA R GP Sbjct: 394 GFEDIACKTLAGNDDYAQMIDETLAGYERFLTLVRERAEPEAILAAFSEFQMLCALREGP 453 Query: 400 AGVDHWNRQVQRWLGEE---TGEPLWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDG 456 GV N +V+ L + PL WY GRP++++ ND L L+NGD GV + DG Sbjct: 454 FGVAGLNERVEHALAQRRLIRRTPL-SRWYEGRPVMISRNDSALGLFNGDIGVALDRGDG 512 Query: 457 MRAVI----GDAGTFATGRLTDVETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 +R G RL D +T AMT+HKSQGS+ D +LLP + + ++TREL Y Sbjct: 513 LRVWFPMPGGKLKPVVPSRLPDNDTAWAMTVHKSQGSEFDHAALLLPGQFAPVVTRELVY 572 >tr|B3ECZ3|B3ECZ3_CHLL2 Tax_Id=290315 SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Chlorobium limicola] Length = 588 Score = 204 bits (519), Expect = 3e-50 Identities = 172/506 (33%), Positives = 233/506 (46%), Gaps = 47/506 (9%) Query: 47 GSVCVDLRSVAGQV-----EXXXXXXXXXXXXXXXXXXXXXXGQP----PVLRLFGDLLY 97 G+VC+DL VAG+V G+P P++ LY Sbjct: 43 GNVCLDLEEVAGEVVRIPGREEPLRLPDIERLVSALRSLHTVGRPGEHRPLILDEAGRLY 102 Query: 98 LDRYWLEEQQVCDDVLALVSARPGGAVPD-------VSRLFG---AGFEEQRAAAKVALS 147 L RY+ ++ + + +LA + G PD + R FG +G + QR AA AL Sbjct: 103 LYRYFRYQETLAEAILARAATETGS--PDEAALSESLDRYFGPDESGEDRQRQAALTALR 160 Query: 148 QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSPRIALAAPTGKAAARLQEAVQLEI 207 + G RIA+AAPTGKAAARL ++ Sbjct: 161 RGFSVISGGPGTGKTTTVVRILGLMLEQP---GGERMRIAMAAPTGKAAARLASSIASLR 217 Query: 208 DQLDLIE--RRRLTGLHATTLHRLLGPRPDTSSRFRHHRANRLPHDVIVVDETSMVSLTM 265 + L E +R L G TT+HRLLG P+ S+ FRH+ N LP+D I+VDE SMV L + Sbjct: 218 ETLPCSEEVKRHLPG-QVTTIHRLLGTIPN-STGFRHNARNPLPYDTIIVDEASMVDLPL 275 Query: 266 MARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGLGSRG---------VAELKTSH 316 M L+ A+ P RL+L+GD DQLASVEAGAVL D+ S G V L ++ Sbjct: 276 MTALVTALMPHARLILIGDRDQLASVEAGAVLGDICRAAESSGSAAFSIKGCVTVLDRNY 335 Query: 317 RFGE--SIGALASAIRTXXXXXXXXXXXXXXEHIEWVHEDPV-EQLREVVVPHAMR-LRQ 372 RFG+ I +L+ AI + + P E +R+ + + R Sbjct: 336 RFGDGSGIASLSRAINSGDAGEALRLLGDPANTTIALEATPTREAVRKRLAARVLEGFRP 395 Query: 373 AAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEPLWGSWYVGRPIL 432 EAL D R+L A R GP G N V+ L E +Y GRP+L Sbjct: 396 YLEAETPEEALRLFDHFRILTALREGPWGAAGMNHTVETLLHEAGLLTASTPFYRGRPVL 455 Query: 433 VTANDYGLKLYNGDTGVVVATPDGMRAVIGDAGTFATGRLTDVE------TMHAMTIHKS 486 VT NDY KL+NGDTG+++ P+ + + T R E T AMT+HKS Sbjct: 456 VTENDYTHKLFNGDTGIILPDPETGKQKAYFIASDGTVRSIPPEFLPAHVTAFAMTVHKS 515 Query: 487 QGSQADEVTVLLPSEDSRLLTRELFY 512 QGS+ D V ++LP ED+ LLTREL Y Sbjct: 516 QGSEFDRVLMVLPPEDTILLTRELIY 541 >tr|A1BGA2|A1BGA2_CHLPD Tax_Id=290317 SubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Chlorobium phaeobacteroides] Length = 581 Score = 201 bits (511), Expect = 2e-49 Identities = 171/528 (32%), Positives = 228/528 (43%), Gaps = 51/528 (9%) Query: 27 DEPDASVEXXXXXXXXXXXGGSVCVDLRSVAGQVEXXXXXXXXXXXXXXXXXXXXXXGQP 86 DEP V G VC+DL +AG+V P Sbjct: 24 DEPGVLVRSVVSLLSQAVGQGHVCLDLEEIAGEVVRIPGREEPLRLPGIVNLLAALRSLP 83 Query: 87 ---------PVLRLFGDLLYLDRYWLEEQQVCDDVLALVSARPGGA-------------V 124 P++ LYL RY+ E Q+ + + A + G V Sbjct: 84 TVGRPGEHRPLILDEAGRLYLYRYFRYELQLAEAIRARAAMETGSPDEAALAEQLDRYFV 143 Query: 125 PDVSRLFGAGFEEQRAAAKVALSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSP 184 PD S G + QR AA AL + G Sbjct: 144 PDES-----GEDRQRQAALTALRRGFSVISGGPGTGKTTTVVRILGLLLEQT---GGERM 195 Query: 185 RIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLT-GLHATTLHRLLGPRPDTSSRFRHH 243 RIA+AAPTGKAAARL ++ + L E + T TT+HRLLG P+ S+ FRH+ Sbjct: 196 RIAMAAPTGKAAARLASSIASLRESLPCTEEVKHTVPSQVTTIHRLLGTIPN-STGFRHN 254 Query: 244 RANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEG 303 N LP+D ++VDE SMV L +M L+ A+ PQ RL+L+GD DQLASVEAGAVL D+ Sbjct: 255 ARNPLPYDAVIVDEASMVDLPLMTALVTALMPQARLILIGDRDQLASVEAGAVLGDICRA 314 Query: 304 LGSRG---------VAELKTSHRFGE--SIGALASAIRTXXXXXXXXXXXXXXEHIEWVH 352 S G V L ++RFG+ I AL+ AI + + + Sbjct: 315 AESPGSAVSSIKGCVTVLDRNYRFGDGSGIAALSRAINSGDAGEAIRLLGDPADSTISLE 374 Query: 353 EDPVEQL--REVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQ 410 P+ + + + P R +AL + R+L A R GP G N V+ Sbjct: 375 ATPMREAVRKRLASPVLEGFRPYLEAEAPEDALRLFERFRILTALREGPWGAAGMNHAVE 434 Query: 411 RWLGEETGEPLWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAGTFATG 470 L E +Y GRP+LVT NDY KL+NGDTG+++ P+ A T Sbjct: 435 TLLHEAGLLKADTPFYRGRPVLVTENDYIHKLFNGDTGIILPDPETGNQKAYFAAPDGTV 494 Query: 471 RLTDVE------TMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFY 512 R E T AMT+HKSQGS+ D V ++LP ED+ LLTREL Y Sbjct: 495 RSIPPEFLPAHVTAFAMTVHKSQGSEFDRVLMVLPPEDTLLLTRELIY 542 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.319 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 3,584,098,188 Number of extensions: 132190398 Number of successful extensions: 337736 Number of sequences better than 10.0: 1955 Number of HSP's gapped: 334431 Number of HSP's successfully gapped: 3004 Length of query: 554 Length of database: 4,236,830,644 Length adjustment: 143 Effective length of query: 411 Effective length of database: 2,448,206,092 Effective search space: 1006212703812 Effective search space used: 1006212703812 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 83 (36.6 bits)