BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_1367 (1169 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P60281|RPOB_MYCS2 Tax_Id=246196 (rpoB)RecName: Full=DNA-direc... 2200 0.0 tr|Q6X0L9|Q6X0L9_MYCSM Tax_Id=1772 SubName: Full=RpoB;[Mycobacte... 2197 0.0 tr|Q6X0L8|Q6X0L8_9MYCO Tax_Id=134601 (rpoB)RecName: Full=DNA-dir... 2182 0.0 tr|D0EL37|D0EL37_9MYCO Tax_Id=212194 (rpoB)RecName: Full=DNA-dir... 2140 0.0 tr|Q6YI64|Q6YI64_9MYCO Tax_Id=53462 (rpoB)RecName: Full=DNA-dire... 2138 0.0 tr|Q6X0L1|Q6X0L1_9MYCO Tax_Id=59750 (rpoB)RecName: Full=DNA-dire... 2134 0.0 sp|Q50388|RPOB_MYCSM Tax_Id=1772 (rpoB)RecName: Full=DNA-directe... 2123 0.0 tr|Q6X0L6|Q6X0L6_9MYCO Tax_Id=1796 (rpoB)RecName: Full=DNA-direc... 2120 0.0 tr|Q2M4U0|Q2M4U0_9MYCO Tax_Id=451644 (rpoB)RecName: Full=DNA-dir... 2119 0.0 tr|Q6YI68|Q6YI68_MYCFO Tax_Id=1766 (rpoB)SubName: Full=RpoB;[Myc... 2118 0.0 tr|Q6YI60|Q6YI60_MYCFO Tax_Id=1766 (rpoB)SubName: Full=RpoB;[Myc... 2117 0.0 tr|Q6X0L7|Q6X0L7_9MYCO Tax_Id=39693 (rpoB)RecName: Full=DNA-dire... 2116 0.0 tr|Q6X0L2|Q6X0L2_9MYCO Tax_Id=1802 (rpoB)RecName: Full=DNA-direc... 2115 0.0 tr|Q6YI61|Q6YI61_MYCFO Tax_Id=1766 (rpoB)SubName: Full=RpoB;[Myc... 2113 0.0 sp|A3PV78|RPOB_MYCSJ Tax_Id=164757 (rpoB)RecName: Full=DNA-direc... 2109 0.0 sp|Q1BDF0|RPOB_MYCSS Tax_Id=164756 (rpoB)RecName: Full=DNA-direc... 2107 0.0 sp|A1UBJ3|RPOB_MYCSK Tax_Id=189918 (rpoB)RecName: Full=DNA-direc... 2107 0.0 tr|Q6YI66|Q6YI66_9MYCO Tax_Id=98668 (rpoB)RecName: Full=DNA-dire... 2105 0.0 tr|Q6YI67|Q6YI67_MYCPR Tax_Id=43304 (rpoB)RecName: Full=DNA-dire... 2104 0.0 sp|A1T4J2|RPOB_MYCVP Tax_Id=350058 (rpoB)RecName: Full=DNA-direc... 2084 0.0 tr|Q2M4T9|Q2M4T9_9MYCO Tax_Id=319709 (rpoB)RecName: Full=DNA-dir... 2072 0.0 sp|A4T1P4|RPOB_MYCGI Tax_Id=350054 (rpoB)RecName: Full=DNA-direc... 2066 0.0 sp|B2HSJ3|RPOB_MYCMM Tax_Id=216594 (rpoB)RecName: Full=DNA-direc... 2055 0.0 tr|Q2M4U2|Q2M4U2_9MYCO Tax_Id=319706 (rpoB)RecName: Full=DNA-dir... 2053 0.0 sp|A0PM24|RPOB_MYCUA Tax_Id=362242 (rpoB)RecName: Full=DNA-direc... 2052 0.0 tr|Q6YI70|Q6YI70_MYCCH Tax_Id=1774 (rpoB)SubName: Full=RpoB;[Myc... 2049 0.0 tr|Q6YI62|Q6YI62_9MYCO Tax_Id=56689 (rpoB)SubName: Full=RpoB;[My... 2048 0.0 tr|Q6X0L5|Q6X0L5_9MYCO Tax_Id=83262 (rpoB)RecName: Full=DNA-dire... 2048 0.0 tr|Q2M4U3|Q2M4U3_9MYCO Tax_Id=319705 (rpoB)RecName: Full=DNA-dir... 2048 0.0 tr|Q5QGG0|Q5QGG0_9MYCO Tax_Id=281216 (rpoB)RecName: Full=DNA-dir... 2047 0.0 tr|Q6YI63|Q6YI63_9MYCO Tax_Id=56689 (rpoB)SubName: Full=RpoB;[My... 2047 0.0 tr|Q6X0L4|Q6X0L4_MYCCH Tax_Id=1774 SubName: Full=RpoB;[Mycobacte... 2046 0.0 tr|Q6YI59|Q6YI59_9MYCO Tax_Id=56689 (rpoB)SubName: Full=RpoB;[My... 2046 0.0 tr|Q6X0L3|Q6X0L3_MYCAB Tax_Id=36809 SubName: Full=RpoB;[Mycobact... 2046 0.0 tr|B1MH62|B1MH62_MYCA9 Tax_Id=561007 (rpoB)RecName: Full=DNA-dir... 2045 0.0 tr|Q6YI69|Q6YI69_MYCAB Tax_Id=36809 (rpoB)SubName: Full=RpoB;[My... 2045 0.0 tr|Q2M4U1|Q2M4U1_9MYCO Tax_Id=319707 (rpoB)RecName: Full=DNA-dir... 2043 0.0 sp|Q73SE4|RPOB_MYCPA Tax_Id=1770 (rpoB)RecName: Full=DNA-directe... 2039 0.0 sp|P30760|RPOB_MYCLE Tax_Id=1769 (rpoB)RecName: Full=DNA-directe... 2039 0.0 sp|B8ZSC7|RPOB_MYCLB Tax_Id=561304 (rpoB)RecName: Full=DNA-direc... 2039 0.0 sp|A0QL49|RPOB_MYCA1 Tax_Id=243243 (rpoB)RecName: Full=DNA-direc... 2039 0.0 sp|P0A680|RPOB_MYCTU Tax_Id=1773 (rpoB)RecName: Full=DNA-directe... 2037 0.0 sp|A1KGE7|RPOB_MYCBP Tax_Id=410289 (rpoB)RecName: Full=DNA-direc... 2037 0.0 sp|P0A681|RPOB_MYCBO Tax_Id=1765 (rpoB)RecName: Full=DNA-directe... 2037 0.0 tr|A4KEZ1|A4KEZ1_MYCTU Tax_Id=395095 (rpoB)RecName: Full=DNA-dir... 2037 0.0 >sp|P60281|RPOB_MYCS2 Tax_Id=246196 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium smegmatis] Length = 1169 Score = 2200 bits (5700), Expect = 0.0 Identities = 1120/1169 (95%), Positives = 1120/1169 (95%) Query: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR Sbjct: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 Query: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY Sbjct: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 Query: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE Sbjct: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 Query: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV Sbjct: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 Query: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA Sbjct: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 Query: 301 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXX 360 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMT Sbjct: 301 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGGVEVPVEVDD 360 Query: 361 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE Sbjct: 361 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 Query: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP 480 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP Sbjct: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP 480 Query: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTD 540 EGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTD Sbjct: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTD 540 Query: 541 ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA Sbjct: 541 ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 Query: 601 NMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQS 660 NMQRQAVPLVRSEAPLVGTGMELR KTGVIEEVSADYITVMADDGTRQS Sbjct: 601 NMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKTGVIEEVSADYITVMADDGTRQS 660 Query: 661 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH 720 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH Sbjct: 661 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH 720 Query: 721 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 780 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI Sbjct: 721 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 780 Query: 781 VRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIG 840 VRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIG Sbjct: 781 VRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIG 840 Query: 841 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 900 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD Sbjct: 841 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 900 Query: 901 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPAD 960 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPAD Sbjct: 901 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPAD 960 Query: 961 STVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMY 1020 STVATPVFD STLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMY Sbjct: 961 STVATPVFDGAQEGELAGLLGSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMY 1020 Query: 1021 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL 1080 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL Sbjct: 1021 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL 1080 Query: 1081 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD 1140 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD Sbjct: 1081 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD 1140 Query: 1141 GDDEDLERAAANLGINLSRNESASVEDLA 1169 GDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 GDDEDLERAAANLGINLSRNESASVEDLA 1169 >tr|Q6X0L9|Q6X0L9_MYCSM Tax_Id=1772 SubName: Full=RpoB;[Mycobacterium smegmatis] Length = 1169 Score = 2197 bits (5692), Expect = 0.0 Identities = 1118/1169 (95%), Positives = 1120/1169 (95%) Query: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR Sbjct: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 Query: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY Sbjct: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 Query: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE Sbjct: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 Query: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV Sbjct: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 Query: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA Sbjct: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 Query: 301 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXX 360 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMT Sbjct: 301 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGGVEVPVEVDD 360 Query: 361 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE Sbjct: 361 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 Query: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP 480 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP Sbjct: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP 480 Query: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTD 540 EGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTD Sbjct: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTD 540 Query: 541 ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA Sbjct: 541 ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 Query: 601 NMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQS 660 NMQRQAVPLVRSEAPLVGTGMELR KTGVIEEVSADYITVMADDGTRQS Sbjct: 601 NMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKTGVIEEVSADYITVMADDGTRQS 660 Query: 661 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH 720 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH Sbjct: 661 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH 720 Query: 721 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 780 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI Sbjct: 721 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 780 Query: 781 VRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIG 840 VRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIG Sbjct: 781 VRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIG 840 Query: 841 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 900 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD Sbjct: 841 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 900 Query: 901 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPAD 960 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPAD Sbjct: 901 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPAD 960 Query: 961 STVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMY 1020 STVATPVFD STLPNRDGEVMV+ADGK+TLFDGRSGEPFPYPVTVGYMY Sbjct: 961 STVATPVFDGAQEGELAGLLGSTLPNRDGEVMVNADGKATLFDGRSGEPFPYPVTVGYMY 1020 Query: 1021 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL 1080 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL Sbjct: 1021 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL 1080 Query: 1081 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD 1140 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD Sbjct: 1081 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD 1140 Query: 1141 GDDEDLERAAANLGINLSRNESASVEDLA 1169 GDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 GDDEDLERAAANLGINLSRNESASVEDLA 1169 >tr|Q6X0L8|Q6X0L8_9MYCO Tax_Id=134601 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium goodii] Length = 1169 Score = 2182 bits (5654), Expect = 0.0 Identities = 1110/1169 (94%), Positives = 1117/1169 (95%) Query: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR Sbjct: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 Query: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY Sbjct: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 Query: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE Sbjct: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 Query: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV Sbjct: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 Query: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA Sbjct: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 Query: 301 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXX 360 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 301 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVEVDD 360 Query: 361 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE Sbjct: 361 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 Query: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP 480 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP Sbjct: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP 480 Query: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTD 540 EGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTDQIDYLTADEEDRHVVAQANSPTD Sbjct: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANSPTD 540 Query: 541 ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 ENGRFTE+RVMVRKKGGEVEFVSA QVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA Sbjct: 541 ENGRFTEERVMVRKKGGEVEFVSAGQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 Query: 601 NMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQS 660 NMQRQAVPLVRSEAPLVGTGMELR KTGVIEEVSADYITVMADDGTRQS Sbjct: 601 NMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKTGVIEEVSADYITVMADDGTRQS 660 Query: 661 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH 720 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH Sbjct: 661 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH 720 Query: 721 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 780 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI Sbjct: 721 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 780 Query: 781 VRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIG 840 VRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIG Sbjct: 781 VRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIG 840 Query: 841 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 900 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD Sbjct: 841 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 900 Query: 901 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPAD 960 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELY+AP+D Sbjct: 901 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYTAPSD 960 Query: 961 STVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMY 1020 S VATPVFD STLPNRDGEVMV+ADGK+TLFDGRSGEPFPYPVTVGYMY Sbjct: 961 SIVATPVFDGAQEGELAGLLGSTLPNRDGEVMVNADGKATLFDGRSGEPFPYPVTVGYMY 1020 Query: 1021 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL 1080 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL Sbjct: 1021 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL 1080 Query: 1081 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD 1140 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD Sbjct: 1081 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD 1140 Query: 1141 GDDEDLERAAANLGINLSRNESASVEDLA 1169 GDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 GDDEDLERAAANLGINLSRNESASVEDLA 1169 >tr|D0EL37|D0EL37_9MYCO Tax_Id=212194 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium sp. DSM 3803] Length = 1178 Score = 2140 bits (5544), Expect = 0.0 Identities = 1088/1170 (92%), Positives = 1105/1170 (94%), Gaps = 1/1170 (0%) Query: 1 MLEGCILAVSSQSKS-NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSD 59 +LEGCILAVSSQSKS NA TNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSD Sbjct: 9 VLEGCILAVSSQSKSANATTNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSD 68 Query: 60 RWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMT 119 RWRQ A+DRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMT Sbjct: 69 RWRQNAVDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMT 128 Query: 120 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 179 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD Sbjct: 129 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 188 Query: 180 ETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 239 ETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI Sbjct: 189 ETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQI 248 Query: 240 VERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 299 VERFGFSEIMMGTLEKD+T+GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL Sbjct: 249 VERFGFSEIMMGTLEKDSTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 308 Query: 300 ARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXX 359 ARVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 309 ARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVEVD 368 Query: 360 XIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 419 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK Sbjct: 369 DIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 428 Query: 420 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET 479 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIET Sbjct: 429 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHYGRMCPIET 488 Query: 480 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPT 539 PEGPNIGLIGSLSVYARVNPFGFIETPYRKV GVVTDQIDYLTADEEDRHVVAQANSPT Sbjct: 489 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVVEGVVTDQIDYLTADEEDRHVVAQANSPT 548 Query: 540 DENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 599 D +GRF+EDRVMVRKKGGEVEFV+ADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG Sbjct: 549 DADGRFSEDRVMVRKKGGEVEFVAADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 608 Query: 600 ANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQ 659 ANMQRQAVPLVRSEAPLVGTGMELR K GVIEEVSADY+TVMADDGTR Sbjct: 609 ANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSDKAGVIEEVSADYVTVMADDGTRH 668 Query: 660 SYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEG 719 +YR+RKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCT+NGEMALGKNLLVAIMPWEG Sbjct: 669 TYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEG 728 Query: 720 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 779 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG Sbjct: 729 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 788 Query: 780 IVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVI 839 IVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVI Sbjct: 789 IVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVI 848 Query: 840 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 899 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP Sbjct: 849 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 908 Query: 900 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPA 959 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNI+VA G PDWASKLPE L SAPA Sbjct: 909 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVADGTPDWASKLPEGLLSAPA 968 Query: 960 DSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYM 1019 DS V+TPVFD STLPNRDGEVMVD DGK+TLFDGRSGEPFPYPVTVGYM Sbjct: 969 DSIVSTPVFDGAQEGELAGLLGSTLPNRDGEVMVDGDGKATLFDGRSGEPFPYPVTVGYM 1028 Query: 1020 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1079 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL Sbjct: 1029 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1088 Query: 1080 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1139 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR Sbjct: 1089 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1148 Query: 1140 DGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1149 DGDDEDLERAAANLGINLSRNESASVEDLA 1178 >tr|Q6YI64|Q6YI64_9MYCO Tax_Id=53462 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium mageritense] Length = 1178 Score = 2139 bits (5541), Expect = 0.0 Identities = 1087/1170 (92%), Positives = 1105/1170 (94%), Gaps = 1/1170 (0%) Query: 1 MLEGCILAVSSQSKS-NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSD 59 +LEGCILAVSSQSKS NA TNNSVPGAPNRVS+AKLREPLEVPGLLDVQTDSFEWLVGSD Sbjct: 9 VLEGCILAVSSQSKSANATTNNSVPGAPNRVSYAKLREPLEVPGLLDVQTDSFEWLVGSD 68 Query: 60 RWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMT 119 RWRQ A+DRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMT Sbjct: 69 RWRQNAVDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMT 128 Query: 120 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 179 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD Sbjct: 129 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 188 Query: 180 ETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 239 ETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI Sbjct: 189 ETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQI 248 Query: 240 VERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 299 VERFGFSEIMMGTLEKD+T+GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL Sbjct: 249 VERFGFSEIMMGTLEKDSTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 308 Query: 300 ARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXX 359 ARVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 309 ARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVEVD 368 Query: 360 XIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 419 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK Sbjct: 369 DIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 428 Query: 420 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET 479 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIET Sbjct: 429 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHYGRMCPIET 488 Query: 480 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPT 539 PEGPNIGLIGSLSVYARVNPFGFIETPYRKV GVVTDQIDYLTADEEDRHVVAQANSPT Sbjct: 489 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVVEGVVTDQIDYLTADEEDRHVVAQANSPT 548 Query: 540 DENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 599 D +GRF+EDRVMVRKKGGEVEFV+ADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG Sbjct: 549 DADGRFSEDRVMVRKKGGEVEFVAADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 608 Query: 600 ANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQ 659 ANMQRQAVPLVRSEAPLVGTGMELR K GVIEEVSADY+TVMADDGTR Sbjct: 609 ANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSDKAGVIEEVSADYVTVMADDGTRH 668 Query: 660 SYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEG 719 +YR+RKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCT+NGEMALGKNLLVAIMPWEG Sbjct: 669 TYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEG 728 Query: 720 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 779 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG Sbjct: 729 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 788 Query: 780 IVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVI 839 IVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVI Sbjct: 789 IVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVI 848 Query: 840 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 899 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP Sbjct: 849 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 908 Query: 900 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPA 959 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNI+VA G PDWASKLPE L SAPA Sbjct: 909 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVADGTPDWASKLPEGLLSAPA 968 Query: 960 DSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYM 1019 DS V+TPVFD STLPNRDGEVMVD DGK+TLFDGRSGEPFPYPVTVGYM Sbjct: 969 DSIVSTPVFDGAQEGELAGLLGSTLPNRDGEVMVDGDGKATLFDGRSGEPFPYPVTVGYM 1028 Query: 1020 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1079 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL Sbjct: 1029 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1088 Query: 1080 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1139 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR Sbjct: 1089 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1148 Query: 1140 DGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1149 DGDDEDLERAAANLGINLSRNESASVEDLA 1178 >tr|Q6X0L1|Q6X0L1_9MYCO Tax_Id=59750 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium wolinskyi] Length = 1169 Score = 2134 bits (5529), Expect = 0.0 Identities = 1082/1169 (92%), Positives = 1101/1169 (94%) Query: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 MLEGCILAVSSQS +NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WLVGSD Sbjct: 1 MLEGCILAVSSQSTANAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVGSDE 60 Query: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 WRQ AIDRGE +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMTY Sbjct: 61 WRQKAIDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTY 120 Query: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE Sbjct: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 Query: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV Sbjct: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 Query: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 ERFGFSEIMMGTLEKD+T+GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA Sbjct: 241 ERFGFSEIMMGTLEKDSTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 Query: 301 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXX 360 RVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 301 RVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVEVDD 360 Query: 361 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE Sbjct: 361 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 Query: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP 480 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIETP Sbjct: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETP 480 Query: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTD 540 EGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTDQIDYLTADEEDRHVVAQANSP D Sbjct: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANSPID 540 Query: 541 ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 +GRFTEDRVMVR+KGGEVE V+ VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA Sbjct: 541 ADGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 Query: 601 NMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQS 660 NMQRQAVPLVRSEAPLVGTGMELR KTGV+EEVSADY+TVMADDGTR + Sbjct: 601 NMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKTGVVEEVSADYVTVMADDGTRHT 660 Query: 661 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH 720 YR+RKFARSNHGTCANQRPIVDAGQRVE+GQVIADGPCTQNGEMALGKNLLVAIMPWEGH Sbjct: 661 YRMRKFARSNHGTCANQRPIVDAGQRVESGQVIADGPCTQNGEMALGKNLLVAIMPWEGH 720 Query: 721 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 780 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI Sbjct: 721 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 780 Query: 781 VRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIG 840 VRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIG Sbjct: 781 VRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIG 840 Query: 841 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 900 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD Sbjct: 841 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 900 Query: 901 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPAD 960 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAG PDWASKLPE+LYSAPAD Sbjct: 901 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPDWASKLPEQLYSAPAD 960 Query: 961 STVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMY 1020 S V+TPVFD STLPNRDGEVMVDADGK+TLFDGRSGEPFPYPVTVGYMY Sbjct: 961 SIVSTPVFDGAQEGELQGLLGSTLPNRDGEVMVDADGKATLFDGRSGEPFPYPVTVGYMY 1020 Query: 1021 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL 1080 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL Sbjct: 1021 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL 1080 Query: 1081 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD 1140 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD Sbjct: 1081 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD 1140 Query: 1141 GDDEDLERAAANLGINLSRNESASVEDLA 1169 GDD DLERAAANLGINLSRNESASVEDLA Sbjct: 1141 GDDADLERAAANLGINLSRNESASVEDLA 1169 >sp|Q50388|RPOB_MYCSM Tax_Id=1772 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium smegmatis] Length = 1169 Score = 2123 bits (5502), Expect = 0.0 Identities = 1094/1170 (93%), Positives = 1099/1170 (93%), Gaps = 2/1170 (0%) Query: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 MLEGCILAVSSQSKSNAITNNSV GAPN VSFAKLREPLEV GLLDVQTDSFEWLVGS R Sbjct: 1 MLEGCILAVSSQSKSNAITNNSVRGAPNGVSFAKLREPLEVRGLLDVQTDSFEWLVGSRR 60 Query: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 RQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY Sbjct: 61 VRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 Query: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE Sbjct: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 Query: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV Sbjct: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 Query: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA Sbjct: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 Query: 301 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXX 360 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMT Sbjct: 301 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGGVEFAVESHD 360 Query: 361 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 IDHFGNRRLRTVGELIQNQIRV LSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE Sbjct: 361 IDHFGNRRLRTVGELIQNQIRVRLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 Query: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP 480 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP Sbjct: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP 480 Query: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTD 540 EGPNIGLIGSLSVYARVNPFGFIETPYRKV GVVTDQIDYLTADEEDRHVVAQANSPTD Sbjct: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVVEGVVTDQIDYLTADEEDRHVVAQANSPTD 540 Query: 541 ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA Sbjct: 541 ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 Query: 601 NMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQS 660 NMQRQAVPLVRSEAPLVGTGMELR KTGVIEEVSADYITVMADDGTRQS Sbjct: 601 NMQRQAVPLVRSEAPLVGTGMELR-AAIDAVTWSSHKTGVIEEVSADYITVMADDGTRQS 659 Query: 661 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH 720 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH Sbjct: 660 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH 719 Query: 721 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 780 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITR IP +SDEVLADLDE I Sbjct: 720 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRVIPKLSDEVLADLDEPRI 779 Query: 781 VRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIG 840 VRIGAEVRDG+ILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIG Sbjct: 780 VRIGAEVRDGEILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIG 839 Query: 841 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 900 IRVFSREDDDELP GVNELVRVYVAQKRKISDGDKLA RHGNKGVIGKILPVEDMPFLPD Sbjct: 840 IRVFSREDDDELPVGVNELVRVYVAQKRKISDGDKLARRHGNKGVIGKILPVEDMPFLPD 899 Query: 901 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPAD 960 GTPVDIILNTHG +NIGQILETHLGW AKAGWNIDV AGVPDWASKLPEELYSAPAD Sbjct: 900 GTPVDIILNTHGCRVVLNIGQILETHLGWGAKAGWNIDVLAGVPDWASKLPEELYSAPAD 959 Query: 961 STVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGR-SGEPFPYPVTVGYM 1019 STVATPVFD STLPNRDGEVMV+ADGK+TLFDGR SGEPFPYPVTVGYM Sbjct: 960 STVATPVFDGAQEGELAGLLGSTLPNRDGEVMVNADGKATLFDGRSSGEPFPYPVTVGYM 1019 Query: 1020 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1079 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL Sbjct: 1020 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1079 Query: 1080 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1139 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG AIEMR Sbjct: 1080 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGRAIEMR 1139 Query: 1140 DGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1140 DGDDEDLERAAANLGINLSRNESASVEDLA 1169 >tr|Q6X0L6|Q6X0L6_9MYCO Tax_Id=1796 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium senegalense] Length = 1170 Score = 2120 bits (5492), Expect = 0.0 Identities = 1075/1170 (91%), Positives = 1099/1170 (93%), Gaps = 1/1170 (0%) Query: 1 MLEGCILAVSSQSKS-NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSD 59 MLEGCILAVSSQSKS NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WLVGSD Sbjct: 1 MLEGCILAVSSQSKSANAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVGSD 60 Query: 60 RWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMT 119 WRQ A+DRGE +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMT Sbjct: 61 EWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMT 120 Query: 120 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 179 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD Sbjct: 121 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 180 Query: 180 ETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 239 E+IDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI Sbjct: 181 ESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 240 Query: 240 VERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 299 ERFGFSEIMMGTLEKD+T+G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL Sbjct: 241 TERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 300 Query: 300 ARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXX 359 ARVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 301 ARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVEVD 360 Query: 360 XIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 419 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK Sbjct: 361 DIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 420 Query: 420 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET 479 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIET Sbjct: 421 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIET 480 Query: 480 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPT 539 PEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTDQIDYLTADEEDRHVVAQANSP Sbjct: 481 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANSPI 540 Query: 540 DENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 599 D +GRFTEDRVMVR+KGGEVE V+ VDYMDVSPRQMVSVATAMIPFLEHDDANRALMG Sbjct: 541 DTDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 600 Query: 600 ANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQ 659 ANMQRQAVPLVRSEAPLVGTGMELR K GV+EEVSADYITVMADDG+R Sbjct: 601 ANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITVMADDGSRH 660 Query: 660 SYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEG 719 +YR+RKFARSNHGTCANQRPIVDAGQRVEAGQV+ADGPCT+NGEMALGKNLLVAIMPWEG Sbjct: 661 TYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPWEG 720 Query: 720 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 779 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG Sbjct: 721 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 780 Query: 780 IVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVI 839 IVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVI Sbjct: 781 IVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVI 840 Query: 840 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 899 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP Sbjct: 841 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 900 Query: 900 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPA 959 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAG P+WASKLPE+LYSAP Sbjct: 901 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQLYSAPV 960 Query: 960 DSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYM 1019 DS V+TPVFD STLPNRDG+VMV+ADGK+TLFDGRSGEPFPYPVTVGYM Sbjct: 961 DSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYPVTVGYM 1020 Query: 1020 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1079 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL Sbjct: 1021 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1080 Query: 1080 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1139 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR Sbjct: 1081 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1140 Query: 1140 DGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 DGDDEDLERAAANLGINLSRNESASVEDLA 1170 >tr|Q2M4U0|Q2M4U0_9MYCO Tax_Id=451644 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium conceptionense] Length = 1170 Score = 2119 bits (5491), Expect = 0.0 Identities = 1074/1170 (91%), Positives = 1099/1170 (93%), Gaps = 1/1170 (0%) Query: 1 MLEGCILAVSSQSKS-NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSD 59 MLEGCILAVSSQSKS NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WLVGSD Sbjct: 1 MLEGCILAVSSQSKSANAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVGSD 60 Query: 60 RWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMT 119 WRQ A+DRGE +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMT Sbjct: 61 EWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMT 120 Query: 120 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 179 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD Sbjct: 121 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 180 Query: 180 ETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 239 E+IDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI Sbjct: 181 ESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 240 Query: 240 VERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 299 ERFGFSEIMMGTLEKD+T+G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL Sbjct: 241 TERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 300 Query: 300 ARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXX 359 ARVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 301 ARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVEVD 360 Query: 360 XIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 419 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK Sbjct: 361 DIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 420 Query: 420 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET 479 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIET Sbjct: 421 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHYGRMCPIET 480 Query: 480 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPT 539 PEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTDQIDYLTADEEDRHVVAQANSP Sbjct: 481 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANSPI 540 Query: 540 DENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 599 D +GRFTEDRVMVR+KGGEVE V+ VDYMDVSPRQMVSVATAMIPFLEHDDANRALMG Sbjct: 541 DADGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 600 Query: 600 ANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQ 659 ANMQRQAVPLVRSEAPLVGTGMELR K GV+EEVSADYITVMADDG+R Sbjct: 601 ANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITVMADDGSRH 660 Query: 660 SYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEG 719 +YR+RKFARSNHGTCANQRPIVDAGQRVEAGQV+ADGPCT+NGEMALGKNLLVAIMPWEG Sbjct: 661 TYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPWEG 720 Query: 720 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 779 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG Sbjct: 721 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 780 Query: 780 IVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVI 839 IVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVI Sbjct: 781 IVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVI 840 Query: 840 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 899 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP Sbjct: 841 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 900 Query: 900 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPA 959 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAG P+WASKLPE+LYSAP Sbjct: 901 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQLYSAPV 960 Query: 960 DSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYM 1019 DS V+TPVFD STLPNRDG+VMVD+DGK+TLFDGRSGEPFPYPVTVGYM Sbjct: 961 DSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVDSDGKATLFDGRSGEPFPYPVTVGYM 1020 Query: 1020 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1079 Y+LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL Sbjct: 1021 YMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1080 Query: 1080 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1139 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR Sbjct: 1081 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1140 Query: 1140 DGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 DGDDEDLERAAANLGINLSRNESASVEDLA 1170 >tr|Q6YI68|Q6YI68_MYCFO Tax_Id=1766 (rpoB)SubName: Full=RpoB;[Mycobacterium fortuitum] Length = 1170 Score = 2118 bits (5488), Expect = 0.0 Identities = 1073/1170 (91%), Positives = 1099/1170 (93%), Gaps = 1/1170 (0%) Query: 1 MLEGCILAVSSQSKS-NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSD 59 MLEGCILAVSSQSKS NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WLVG+D Sbjct: 1 MLEGCILAVSSQSKSANAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVGAD 60 Query: 60 RWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMT 119 WRQ A+DRGE +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMT Sbjct: 61 EWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMT 120 Query: 120 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 179 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD Sbjct: 121 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 180 Query: 180 ETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 239 E+IDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI Sbjct: 181 ESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 240 Query: 240 VERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 299 ERFGFSEIMMGTLEKD+T+G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL Sbjct: 241 TERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 300 Query: 300 ARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXX 359 ARVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 301 ARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVEVD 360 Query: 360 XIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 419 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK Sbjct: 361 DIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 420 Query: 420 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET 479 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIET Sbjct: 421 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIET 480 Query: 480 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPT 539 PEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTDQIDYLTADEEDRHVVAQANSP Sbjct: 481 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANSPI 540 Query: 540 DENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 599 D +GRFTEDRVMVR+KGGEVE V+ VDYMDVSPRQMVSVATAMIPFLEHDDANRALMG Sbjct: 541 DPDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 600 Query: 600 ANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQ 659 ANMQRQAVPLVRSEAPLVGTGMELR K G++EEVSADYITVMADDG+R Sbjct: 601 ANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGIVEEVSADYITVMADDGSRH 660 Query: 660 SYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEG 719 +YR+RKFARSNHGTCANQRPIVDAGQRVEAGQV+ADGPCT+NGEMALGKNLLVAIMPWEG Sbjct: 661 TYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPWEG 720 Query: 720 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 779 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG Sbjct: 721 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 780 Query: 780 IVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVI 839 IVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVI Sbjct: 781 IVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVI 840 Query: 840 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 899 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP Sbjct: 841 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 900 Query: 900 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPA 959 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAG P+WASKLPE+LYSAP Sbjct: 901 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQLYSAPV 960 Query: 960 DSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYM 1019 DS V+TPVFD STLPNRDG+VMV+ADGK+TLFDGRSGEPFPYPVTVGYM Sbjct: 961 DSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYPVTVGYM 1020 Query: 1020 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1079 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL Sbjct: 1021 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1080 Query: 1080 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1139 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR Sbjct: 1081 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1140 Query: 1140 DGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 DGDDEDLERAAANLGINLSRNESASVEDLA 1170 >tr|Q6YI60|Q6YI60_MYCFO Tax_Id=1766 (rpoB)SubName: Full=RpoB;[Mycobacterium fortuitum] Length = 1177 Score = 2117 bits (5484), Expect = 0.0 Identities = 1072/1170 (91%), Positives = 1099/1170 (93%), Gaps = 1/1170 (0%) Query: 1 MLEGCILAVSSQSKS-NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSD 59 +LEGCILAVSSQSKS NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WLVGSD Sbjct: 8 VLEGCILAVSSQSKSANAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVGSD 67 Query: 60 RWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMT 119 WRQ A+DRGE +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMT Sbjct: 68 EWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMT 127 Query: 120 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 179 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD Sbjct: 128 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 187 Query: 180 ETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 239 E+IDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI Sbjct: 188 ESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 247 Query: 240 VERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 299 ERFGFSEIMMGTLEKD+T+G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL Sbjct: 248 TERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 307 Query: 300 ARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXX 359 ARVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 308 ARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVEVD 367 Query: 360 XIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 419 +DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK Sbjct: 368 DMDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 427 Query: 420 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET 479 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIET Sbjct: 428 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIET 487 Query: 480 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPT 539 PEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTDQIDYLTADEEDRHVVAQANSP Sbjct: 488 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANSPI 547 Query: 540 DENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 599 D +GRFTEDRVMVR+KGGEVE V+ VDYMDVSPRQMVSVATAMIPFLEHDDANRALMG Sbjct: 548 DPDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 607 Query: 600 ANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQ 659 ANMQRQAVPLVRSEAPLVGTGMELR K G++EEVSADYITVMADDG+R Sbjct: 608 ANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGIVEEVSADYITVMADDGSRH 667 Query: 660 SYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEG 719 +YR+RKFARSNHGTCANQRPIVDAGQRVEAGQV+ADGPCT+NGEMALGKNLLVAIMPWEG Sbjct: 668 TYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPWEG 727 Query: 720 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 779 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG Sbjct: 728 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 787 Query: 780 IVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVI 839 IVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVI Sbjct: 788 IVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVI 847 Query: 840 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 899 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP Sbjct: 848 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 907 Query: 900 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPA 959 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAG P+WASKLPE+LYSAP Sbjct: 908 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQLYSAPV 967 Query: 960 DSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYM 1019 DS V+TPVFD STLPNRDG+VMV+ADGK+TLFDGRSGEPFPYPVTVGYM Sbjct: 968 DSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYPVTVGYM 1027 Query: 1020 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1079 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL Sbjct: 1028 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1087 Query: 1080 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1139 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR Sbjct: 1088 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1147 Query: 1140 DGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1148 DGDDEDLERAAANLGINLSRNESASVEDLA 1177 >tr|Q6X0L7|Q6X0L7_9MYCO Tax_Id=39693 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium porcinum] Length = 1169 Score = 2116 bits (5483), Expect = 0.0 Identities = 1070/1169 (91%), Positives = 1097/1169 (93%) Query: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 MLEGCILAVSSQS +NA TNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WLVGSD Sbjct: 1 MLEGCILAVSSQSTANANTNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVGSDE 60 Query: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 WRQ A+DRGE +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMTY Sbjct: 61 WRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTY 120 Query: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE Sbjct: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 Query: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 +IDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI Sbjct: 181 SIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIT 240 Query: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 ERFGFSEIMMGTLEKD+T+G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA Sbjct: 241 ERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 Query: 301 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXX 360 RVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 301 RVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVEVDD 360 Query: 361 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE Sbjct: 361 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 Query: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP 480 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIETP Sbjct: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHYGRMCPIETP 480 Query: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTD 540 EGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+DQIDYLTADEEDRHVVAQANSP D Sbjct: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVIDGVVSDQIDYLTADEEDRHVVAQANSPID 540 Query: 541 ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 +GRFTEDRVMVR+KGGEVE V+ VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA Sbjct: 541 NDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 Query: 601 NMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQS 660 NMQRQAVPLVRSEAPLVGTGMELR K GV+EEVSADYITVMADDG+R + Sbjct: 601 NMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITVMADDGSRHT 660 Query: 661 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH 720 YR+RKFARSNHGTCANQRPIVDAGQRVEAGQV+ADGPCT+NGEMALGKNLLVAIMPWEGH Sbjct: 661 YRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPWEGH 720 Query: 721 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 780 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI Sbjct: 721 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 780 Query: 781 VRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIG 840 VRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIG Sbjct: 781 VRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIG 840 Query: 841 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 900 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD Sbjct: 841 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 900 Query: 901 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPAD 960 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAG P+WASKLPE+LYSAP D Sbjct: 901 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQLYSAPVD 960 Query: 961 STVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMY 1020 S V+TPVFD STLPNRDG+VMVD+DGK+TLFDGRSGEPFPYPVTVGYMY Sbjct: 961 SIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVDSDGKATLFDGRSGEPFPYPVTVGYMY 1020 Query: 1021 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL 1080 +LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL Sbjct: 1021 MLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL 1080 Query: 1081 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD 1140 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD Sbjct: 1081 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD 1140 Query: 1141 GDDEDLERAAANLGINLSRNESASVEDLA 1169 GDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 GDDEDLERAAANLGINLSRNESASVEDLA 1169 >tr|Q6X0L2|Q6X0L2_9MYCO Tax_Id=1802 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium farcinogenes] Length = 1170 Score = 2115 bits (5480), Expect = 0.0 Identities = 1073/1170 (91%), Positives = 1098/1170 (93%), Gaps = 1/1170 (0%) Query: 1 MLEGCILAVSSQSKS-NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSD 59 MLEGCILAVSSQSKS NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WLVGSD Sbjct: 1 MLEGCILAVSSQSKSANAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVGSD 60 Query: 60 RWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMT 119 WRQ A+DRGE +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMT Sbjct: 61 EWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMT 120 Query: 120 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 179 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD Sbjct: 121 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 180 Query: 180 ETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 239 E+IDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI Sbjct: 181 ESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 240 Query: 240 VERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 299 ERFGFSEIMM TLEKD+T+G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL Sbjct: 241 TERFGFSEIMMVTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 300 Query: 300 ARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXX 359 ARVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 301 ARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVEVD 360 Query: 360 XIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 419 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK Sbjct: 361 DIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 420 Query: 420 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET 479 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIET Sbjct: 421 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIET 480 Query: 480 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPT 539 PEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTDQIDYLTADEEDRHVVAQAN+P Sbjct: 481 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANTPI 540 Query: 540 DENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 599 D +GRFTEDRVMVR+KGGEVE V+ VDYMDVSPRQMVSVATAMIPFLEHDDANRALMG Sbjct: 541 DTDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 600 Query: 600 ANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQ 659 ANMQRQAVPLVRSEAPLVGTGMELR K GV+EEVSADYITVMADDG+R Sbjct: 601 ANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITVMADDGSRH 660 Query: 660 SYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEG 719 +YR+RKFARSNHGTCANQRPIVDAGQRVEAGQV+ADGPCT+NGEMALGKNLLVAIMPWEG Sbjct: 661 TYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPWEG 720 Query: 720 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 779 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG Sbjct: 721 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 780 Query: 780 IVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVI 839 IVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVI Sbjct: 781 IVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVI 840 Query: 840 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 899 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP Sbjct: 841 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 900 Query: 900 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPA 959 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAG P+WASKLPE+LYSAP Sbjct: 901 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQLYSAPV 960 Query: 960 DSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYM 1019 DS V+TPVFD STLPNRDG+VMV+ADGK+TLFDGRSGEPFPYPVTVGYM Sbjct: 961 DSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYPVTVGYM 1020 Query: 1020 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1079 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL Sbjct: 1021 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1080 Query: 1080 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1139 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR Sbjct: 1081 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1140 Query: 1140 DGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 DGDDEDLERAAANLGINLSRNESASVEDLA 1170 >tr|Q6YI61|Q6YI61_MYCFO Tax_Id=1766 (rpoB)SubName: Full=RpoB;[Mycobacterium fortuitum] Length = 1208 Score = 2113 bits (5476), Expect = 0.0 Identities = 1071/1170 (91%), Positives = 1099/1170 (93%), Gaps = 1/1170 (0%) Query: 1 MLEGCILAVSSQSKS-NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSD 59 +LEGCILAVSSQSKS NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WLVG+D Sbjct: 39 VLEGCILAVSSQSKSANAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVGAD 98 Query: 60 RWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMT 119 WRQ A+DRGE +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMT Sbjct: 99 GWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMT 158 Query: 120 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 179 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD Sbjct: 159 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 218 Query: 180 ETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 239 E+IDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI Sbjct: 219 ESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 278 Query: 240 VERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 299 ERFGFSEIMMGTLEKD+T+G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL Sbjct: 279 TERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 338 Query: 300 ARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXX 359 ARVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 339 ARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVEVD 398 Query: 360 XIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 419 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK Sbjct: 399 DIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 458 Query: 420 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET 479 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIET Sbjct: 459 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIET 518 Query: 480 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPT 539 PEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+DQIDYLTADEEDRHVVAQANSP Sbjct: 519 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLTADEEDRHVVAQANSPI 578 Query: 540 DENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 599 D +GRFTEDRVMVR+KGGEVE V+ VDYMDVSPRQMVSVATAMIPFLEHDDANRALMG Sbjct: 579 DADGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 638 Query: 600 ANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQ 659 ANMQRQAVPLVRSEAPLVGTGMELR K GV+EEVSADYITVMADDG+R Sbjct: 639 ANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITVMADDGSRH 698 Query: 660 SYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEG 719 +YR+RKFARSNHGTCANQRPIVDAGQRVEAGQV+ADGPCT+NGEMALGKNLLVAIMPWEG Sbjct: 699 TYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPWEG 758 Query: 720 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 779 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG Sbjct: 759 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 818 Query: 780 IVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVI 839 IVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVI Sbjct: 819 IVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVI 878 Query: 840 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 899 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP Sbjct: 879 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 938 Query: 900 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPA 959 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAG P+WAS+LPE+LYSAP Sbjct: 939 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASRLPEQLYSAPV 998 Query: 960 DSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYM 1019 DS V+TPVFD STLPNRDG+VMV+ADGK+TLFDGRSGEPFPYPVTVGYM Sbjct: 999 DSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYPVTVGYM 1058 Query: 1020 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1079 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL Sbjct: 1059 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1118 Query: 1080 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1139 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR Sbjct: 1119 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1178 Query: 1140 DGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1179 DGDDEDLERAAANLGINLSRNESASVEDLA 1208 >sp|A3PV78|RPOB_MYCSJ Tax_Id=164757 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium sp.] Length = 1172 Score = 2109 bits (5464), Expect = 0.0 Identities = 1071/1172 (91%), Positives = 1093/1172 (93%), Gaps = 3/1172 (0%) Query: 1 MLEGCILAVSSQSKS-NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSD 59 MLEGCILAVSSQSKS AITNNSVPGAPNR+SFAKLREPLEVPGLLDVQT+SF+WL+G+D Sbjct: 1 MLEGCILAVSSQSKSAKAITNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFDWLIGAD 60 Query: 60 RWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMT 119 WRQ A RG+ NP GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMT Sbjct: 61 SWRQRATARGDVNPTGGLEEVLTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMT 120 Query: 120 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 179 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD Sbjct: 121 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 180 Query: 180 ETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 239 E+IDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI Sbjct: 181 ESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 240 Query: 240 VERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 299 ERFGFSEIMM TLEKD T+GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL Sbjct: 241 TERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 300 Query: 300 ARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXX 359 ARVGRYKVNKKLGLN KPITSSTLTEEDVVATIEYLVRLHEGQ +MT Sbjct: 301 ARVGRYKVNKKLGLNTDKPITSSTLTEEDVVATIEYLVRLHEGQATMTVPGGVEVPVEVD 360 Query: 360 XIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 419 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK Sbjct: 361 DIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 420 Query: 420 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET 479 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIET Sbjct: 421 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIET 480 Query: 480 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPT 539 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSP Sbjct: 481 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPL 540 Query: 540 DENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 599 D+ G FTEDRV+VR+KGGEVEFVSA +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMG Sbjct: 541 DDEGHFTEDRVLVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 600 Query: 600 ANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQ 659 ANMQRQAVPLVRSEAPLVGTGMELR K GV+EEVSADYITVMADDGTR Sbjct: 601 ANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITVMADDGTRH 660 Query: 660 SYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEG 719 +YR+RKFARSNHGTCANQRPIVDAGQRVEAGQV+ADGPCTQNGEMALGKNLLVAIMPWEG Sbjct: 661 TYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTQNGEMALGKNLLVAIMPWEG 720 Query: 720 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 779 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG Sbjct: 721 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 780 Query: 780 IVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVI 839 IVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVI Sbjct: 781 IVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVI 840 Query: 840 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 899 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP Sbjct: 841 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 900 Query: 900 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAA--GVPDWASKLPEELYSA 957 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNI+VA GVPDWA KLPEELYSA Sbjct: 901 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVAGADGVPDWAEKLPEELYSA 960 Query: 958 PADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVG 1017 P+DS VATPVFD STLPNRDG+VMV+ DGK+ LFDGRSGEPFPYPVTVG Sbjct: 961 PSDSIVATPVFDGARENELSGLLASTLPNRDGDVMVNEDGKAELFDGRSGEPFPYPVTVG 1020 Query: 1018 YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1077 YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ Sbjct: 1021 YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080 Query: 1078 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1137 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE Sbjct: 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140 Query: 1138 MRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 MRDGDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 MRDGDDEDLERAAANLGINLSRNESASVEDLA 1172 >sp|Q1BDF0|RPOB_MYCSS Tax_Id=164756 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium sp.] Length = 1172 Score = 2107 bits (5458), Expect = 0.0 Identities = 1070/1172 (91%), Positives = 1092/1172 (93%), Gaps = 3/1172 (0%) Query: 1 MLEGCILAVSSQSKS-NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSD 59 MLEGCILAVSSQSKS AITNNSVPGAPNR+SFAKLREPLEVPGLLDVQT+SF+WL+G+D Sbjct: 1 MLEGCILAVSSQSKSAKAITNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFDWLIGAD 60 Query: 60 RWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMT 119 WRQ A RG+ NP GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMT Sbjct: 61 SWRQRATARGDVNPTGGLEEVLTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMT 120 Query: 120 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 179 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD Sbjct: 121 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 180 Query: 180 ETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 239 E+IDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI Sbjct: 181 ESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 240 Query: 240 VERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 299 ERFGFSEIMM TLEKD T+GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL Sbjct: 241 TERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 300 Query: 300 ARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXX 359 ARVGRYKVNKKLGLN KPITSSTLTEEDVVATIEYLVRLH+G T MT Sbjct: 301 ARVGRYKVNKKLGLNTDKPITSSTLTEEDVVATIEYLVRLHQGDTVMTVPGGVEVPVEVD 360 Query: 360 XIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 419 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK Sbjct: 361 DIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 420 Query: 420 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET 479 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIET Sbjct: 421 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIET 480 Query: 480 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPT 539 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSP Sbjct: 481 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPL 540 Query: 540 DENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 599 D+ G FTEDRV+VR+KGGEVEFVSA +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMG Sbjct: 541 DDEGHFTEDRVLVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 600 Query: 600 ANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQ 659 ANMQRQAVPLVRSEAPLVGTGMELR K GV+EEVSADYITVMADDGTR Sbjct: 601 ANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITVMADDGTRH 660 Query: 660 SYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEG 719 +YR+RKFARSNHGTCANQRPIVDAGQRVEAGQV+ADGPCTQNGEMALGKNLLVAIMPWEG Sbjct: 661 TYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTQNGEMALGKNLLVAIMPWEG 720 Query: 720 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 779 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG Sbjct: 721 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 780 Query: 780 IVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVI 839 IVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVI Sbjct: 781 IVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVI 840 Query: 840 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 899 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP Sbjct: 841 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 900 Query: 900 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAA--GVPDWASKLPEELYSA 957 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNI+VA GVPDWA KLPEELYSA Sbjct: 901 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVAGADGVPDWAEKLPEELYSA 960 Query: 958 PADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVG 1017 P+DS VATPVFD STLPNRDG+VMV+ DGK+ LFDGRSGEPFPYPVTVG Sbjct: 961 PSDSIVATPVFDGARENELSGLLASTLPNRDGDVMVNEDGKAELFDGRSGEPFPYPVTVG 1020 Query: 1018 YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1077 YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ Sbjct: 1021 YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080 Query: 1078 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1137 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE Sbjct: 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140 Query: 1138 MRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 MRDGDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 MRDGDDEDLERAAANLGINLSRNESASVEDLA 1172 >sp|A1UBJ3|RPOB_MYCSK Tax_Id=189918 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium sp.] Length = 1172 Score = 2107 bits (5458), Expect = 0.0 Identities = 1070/1172 (91%), Positives = 1092/1172 (93%), Gaps = 3/1172 (0%) Query: 1 MLEGCILAVSSQSKS-NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSD 59 MLEGCILAVSSQSKS AITNNSVPGAPNR+SFAKLREPLEVPGLLDVQT+SF+WL+G+D Sbjct: 1 MLEGCILAVSSQSKSAKAITNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFDWLIGAD 60 Query: 60 RWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMT 119 WRQ A RG+ NP GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMT Sbjct: 61 SWRQRATARGDVNPTGGLEEVLTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMT 120 Query: 120 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 179 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD Sbjct: 121 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 180 Query: 180 ETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 239 E+IDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI Sbjct: 181 ESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 240 Query: 240 VERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 299 ERFGFSEIMM TLEKD T+GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL Sbjct: 241 TERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 300 Query: 300 ARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXX 359 ARVGRYKVNKKLGLN KPITSSTLTEEDVVATIEYLVRLH+G T MT Sbjct: 301 ARVGRYKVNKKLGLNTDKPITSSTLTEEDVVATIEYLVRLHQGDTVMTVPGGVEVPVEVD 360 Query: 360 XIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 419 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK Sbjct: 361 DIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 420 Query: 420 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET 479 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIET Sbjct: 421 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIET 480 Query: 480 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPT 539 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSP Sbjct: 481 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPL 540 Query: 540 DENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 599 D+ G FTEDRV+VR+KGGEVEFVSA +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMG Sbjct: 541 DDEGHFTEDRVLVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 600 Query: 600 ANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQ 659 ANMQRQAVPLVRSEAPLVGTGMELR K GV+EEVSADYITVMADDGTR Sbjct: 601 ANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITVMADDGTRH 660 Query: 660 SYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEG 719 +YR+RKFARSNHGTCANQRPIVDAGQRVEAGQV+ADGPCTQNGEMALGKNLLVAIMPWEG Sbjct: 661 TYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTQNGEMALGKNLLVAIMPWEG 720 Query: 720 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 779 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG Sbjct: 721 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 780 Query: 780 IVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVI 839 IVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVI Sbjct: 781 IVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVI 840 Query: 840 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 899 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP Sbjct: 841 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 900 Query: 900 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAA--GVPDWASKLPEELYSA 957 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNI+VA GVPDWA KLPEELYSA Sbjct: 901 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVAGADGVPDWAEKLPEELYSA 960 Query: 958 PADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVG 1017 P+DS VATPVFD STLPNRDG+VMV+ DGK+ LFDGRSGEPFPYPVTVG Sbjct: 961 PSDSIVATPVFDGARENELSGLLASTLPNRDGDVMVNEDGKAELFDGRSGEPFPYPVTVG 1020 Query: 1018 YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1077 YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ Sbjct: 1021 YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080 Query: 1078 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1137 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE Sbjct: 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140 Query: 1138 MRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 MRDGDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 MRDGDDEDLERAAANLGINLSRNESASVEDLA 1172 >tr|Q6YI66|Q6YI66_9MYCO Tax_Id=98668 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium septicum] Length = 1185 Score = 2105 bits (5453), Expect = 0.0 Identities = 1064/1169 (91%), Positives = 1095/1169 (93%) Query: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 +LEGCILAVSSQS +NA TNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WLVG+D Sbjct: 17 VLEGCILAVSSQSTANANTNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVGADG 76 Query: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 WRQ A+DRGE NP GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMTY Sbjct: 77 WRQKAVDRGETNPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTY 136 Query: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD+ Sbjct: 137 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDD 196 Query: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 +IDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV Sbjct: 197 SIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 256 Query: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 ERFGFSEIMMGTLEKD+T+G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA Sbjct: 257 ERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 316 Query: 301 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXX 360 RVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 317 RVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVEVDD 376 Query: 361 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE Sbjct: 377 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 436 Query: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP 480 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIETP Sbjct: 437 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETP 496 Query: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTD 540 EGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+DQIDYLTADEEDRHVVAQANSP D Sbjct: 497 EGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLTADEEDRHVVAQANSPID 556 Query: 541 ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 +G FTEDRVMVR+KGGEVE V+ VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA Sbjct: 557 ADGSFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 616 Query: 601 NMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQS 660 NMQRQAVPLVRSEAPLVGTGMELR K GV+EEVSADYITVMADDG+R + Sbjct: 617 NMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITVMADDGSRHT 676 Query: 661 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH 720 YR+RKFARSNHGTCANQRPIVDAGQRVEAGQV+ADGPCT+NGEMALGKNLLVAIMPWEGH Sbjct: 677 YRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPWEGH 736 Query: 721 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 780 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI Sbjct: 737 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 796 Query: 781 VRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIG 840 VRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIG Sbjct: 797 VRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIG 856 Query: 841 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 900 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF+PD Sbjct: 857 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFMPD 916 Query: 901 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPAD 960 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVA G P+WAS+LP+ L+SAP D Sbjct: 917 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAEGTPEWASRLPDGLHSAPVD 976 Query: 961 STVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMY 1020 S V+TPVFD STLPNRDG+VMV+ADGK+TLFDGRSGEPFPYPVTVGYMY Sbjct: 977 SIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYPVTVGYMY 1036 Query: 1021 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL 1080 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL Sbjct: 1037 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL 1096 Query: 1081 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD 1140 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD Sbjct: 1097 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD 1156 Query: 1141 GDDEDLERAAANLGINLSRNESASVEDLA 1169 GDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1157 GDDEDLERAAANLGINLSRNESASVEDLA 1185 >tr|Q6YI67|Q6YI67_MYCPR Tax_Id=43304 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium peregrinum] Length = 1169 Score = 2104 bits (5452), Expect = 0.0 Identities = 1064/1169 (91%), Positives = 1095/1169 (93%) Query: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 MLEGCILAVSSQS +NA TNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WLVG+D Sbjct: 1 MLEGCILAVSSQSTANANTNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVGADG 60 Query: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 WRQ A+DRGE +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMTY Sbjct: 61 WRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTY 120 Query: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE Sbjct: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 Query: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 +IDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI Sbjct: 181 SIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIT 240 Query: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 ERFGFSEIMMGTLEKD+T+G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA Sbjct: 241 ERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 Query: 301 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXX 360 RVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQTSMT Sbjct: 301 RVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGGVEVPVEVDD 360 Query: 361 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE Sbjct: 361 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 Query: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP 480 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIETP Sbjct: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETP 480 Query: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTD 540 EGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+DQIDYLTADEEDRHVVAQANSP D Sbjct: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLTADEEDRHVVAQANSPID 540 Query: 541 ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 +GRFTEDRVMVR+KGGEVE V+ VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA Sbjct: 541 TDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 Query: 601 NMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQS 660 NMQRQAVPLVRSEAPLVGTGMELR K GV+EEVSADYITVMADDG+R + Sbjct: 601 NMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITVMADDGSRHT 660 Query: 661 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH 720 YR+RKFARSNHGTCANQRPIVDAGQRVEAGQV+ADGPCT+NGEMALGKNLLVAIMPWEGH Sbjct: 661 YRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPWEGH 720 Query: 721 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 780 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI Sbjct: 721 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 780 Query: 781 VRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIG 840 VRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIG Sbjct: 781 VRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIG 840 Query: 841 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 900 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF+PD Sbjct: 841 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFMPD 900 Query: 901 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPAD 960 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVA G P+WAS+LP+ L+SAP D Sbjct: 901 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAEGTPEWASRLPDGLHSAPVD 960 Query: 961 STVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMY 1020 S V+TPVFD STLPNRDG+VMV+ADGK+TLFDGRSGEPFPYPVTVGYMY Sbjct: 961 SIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYPVTVGYMY 1020 Query: 1021 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL 1080 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL Sbjct: 1021 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL 1080 Query: 1081 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD 1140 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD Sbjct: 1081 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD 1140 Query: 1141 GDDEDLERAAANLGINLSRNESASVEDLA 1169 GDDEDL+RAAANLGINLSRNESASVEDLA Sbjct: 1141 GDDEDLDRAAANLGINLSRNESASVEDLA 1169 >sp|A1T4J2|RPOB_MYCVP Tax_Id=350058 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium vanbaalenii] Length = 1167 Score = 2084 bits (5400), Expect = 0.0 Identities = 1055/1169 (90%), Positives = 1088/1169 (93%), Gaps = 2/1169 (0%) Query: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 MLEGCILA S Q +S TNNSVPGAPNR+SFAKLREPLEVPGLLDVQT+SFEWL+G++ Sbjct: 1 MLEGCILAGSRQIEST--TNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFEWLIGAED 58 Query: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 W Q A DRG+ +P GGL+EVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMTY Sbjct: 59 WFQRAADRGDVDPKGGLQEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTY 118 Query: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE Sbjct: 119 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 178 Query: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 +IDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV Sbjct: 179 SIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 238 Query: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 ERFGFSEIMM TLEKD T+GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA Sbjct: 239 ERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 298 Query: 301 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXX 360 RVGRYKVNKKLGLN G+PITSSTLTEEDVVATIEYLVRLH+G +MT Sbjct: 299 RVGRYKVNKKLGLNVGQPITSSTLTEEDVVATIEYLVRLHQGDQTMTAPGGSEVPVEVDD 358 Query: 361 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE Sbjct: 359 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 418 Query: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP 480 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIETP Sbjct: 419 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETP 478 Query: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTD 540 EGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTDQIDYLTADEEDRHVVAQANSP D Sbjct: 479 EGPNIGLIGSLSVYARVNPFGFIETPYRKVTDGVVTDQIDYLTADEEDRHVVAQANSPLD 538 Query: 541 ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 +G F E+RV+VR+KGGEVEFVSA +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA Sbjct: 539 GDGHFEEERVLVRRKGGEVEFVSAAEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 598 Query: 601 NMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQS 660 NMQRQAVPLVRSEAPLVGTGMELR K GV+EEVSADYITVMADDGTR + Sbjct: 599 NMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVTEKAGVVEEVSADYITVMADDGTRHT 658 Query: 661 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH 720 YR+RKFARSNHGTCANQRPIVDAGQRVE+GQV+ADGPCT+NGEMALGKNLLVAIMPWEGH Sbjct: 659 YRMRKFARSNHGTCANQRPIVDAGQRVESGQVLADGPCTENGEMALGKNLLVAIMPWEGH 718 Query: 721 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 780 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI Sbjct: 719 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 778 Query: 781 VRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIG 840 +RIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIG Sbjct: 779 IRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIG 838 Query: 841 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 900 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD Sbjct: 839 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 898 Query: 901 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPAD 960 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAG P+WA+KLPE++ SAPAD Sbjct: 899 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWAAKLPEQMLSAPAD 958 Query: 961 STVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMY 1020 S VATPVFD STLPNRDGE MV+ADGK+TLFDGRSGEPFPYPVTVGYMY Sbjct: 959 SIVATPVFDGAQEGELQGLLGSTLPNRDGETMVNADGKATLFDGRSGEPFPYPVTVGYMY 1018 Query: 1021 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL 1080 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL Sbjct: 1019 ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL 1078 Query: 1081 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD 1140 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD Sbjct: 1079 TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD 1138 Query: 1141 GDDEDLERAAANLGINLSRNESASVEDLA 1169 GDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1139 GDDEDLERAAANLGINLSRNESASVEDLA 1167 >tr|Q2M4T9|Q2M4T9_9MYCO Tax_Id=319709 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium barrassiae] Length = 1167 Score = 2072 bits (5369), Expect = 0.0 Identities = 1052/1170 (89%), Positives = 1082/1170 (92%), Gaps = 4/1170 (0%) Query: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 MLEGCILA S QSKS +TNNSVPGAPNR+SFAKLREPLEVPGLLDVQT+SFEWL+GSDR Sbjct: 1 MLEGCILAGSRQSKSAVVTNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFEWLIGSDR 60 Query: 61 WRQAAIDRGEE-NPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMT 119 WR+ A RG+ PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMT Sbjct: 61 WRENAKLRGDAIEPVGGLEEVLTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMT 120 Query: 120 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 179 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD Sbjct: 121 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 180 Query: 180 ETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 239 E+IDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI Sbjct: 181 ESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI 240 Query: 240 VERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 299 VERFGFSEIMMGTLEKD T+GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL Sbjct: 241 VERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 300 Query: 300 ARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXX 359 ARVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLH+G +MT Sbjct: 301 ARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHQGDQTMTAPGGVEVPVEVD 360 Query: 360 XIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 419 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK Sbjct: 361 DIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 420 Query: 420 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET 479 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIET Sbjct: 421 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIET 480 Query: 480 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPT 539 PEGPNIGLIGSLSVYARVNPFGFIETPYRKV++GVVTD I+YLTADEEDRHVVAQANSPT Sbjct: 481 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVKDGVVTDDIEYLTADEEDRHVVAQANSPT 540 Query: 540 DENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 599 DE GRF E+RV+VR+KGGEVEFVSA +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMG Sbjct: 541 DEKGRFLEERVLVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 600 Query: 600 ANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQ 659 ANMQRQAVPLVRSEAPLVGTGMELR K GVIEEVSADYITVMADDGTR Sbjct: 601 ANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKAGVIEEVSADYITVMADDGTRH 660 Query: 660 SYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEG 719 +YR+RKFARSNHGTCANQRPIVDAG RVEAGQVIADGPCT+NGEMALGKNLLVAIMPWEG Sbjct: 661 TYRMRKFARSNHGTCANQRPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEG 720 Query: 720 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 779 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG Sbjct: 721 HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG 780 Query: 780 IVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVI 839 IVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVI Sbjct: 781 IVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVI 840 Query: 840 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 899 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP Sbjct: 841 GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP 900 Query: 900 DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPA 959 DGTPVDIILNTHGVPRRMNIGQILETHLGW AKAGW ID G PDWA+ LPEE+ Sbjct: 901 DGTPVDIILNTHGVPRRMNIGQILETHLGWAAKAGWKID---GSPDWAANLPEEMLEVEP 957 Query: 960 DSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYM 1019 ++ V+TPVFD +TLPNRDG+ +VD DGK+ LFDGRSGEPFPYPVTVGYM Sbjct: 958 NTIVSTPVFDGAREAELQGLLSATLPNRDGDTLVDGDGKAQLFDGRSGEPFPYPVTVGYM 1017 Query: 1020 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1079 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL Sbjct: 1018 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1077 Query: 1080 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1139 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR Sbjct: 1078 LTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR 1137 Query: 1140 DGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1138 DGDDEDLERAAANLGINLSRNESASVEDLA 1167 >sp|A4T1P4|RPOB_MYCGI Tax_Id=350054 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium gilvum] Length = 1174 Score = 2066 bits (5353), Expect = 0.0 Identities = 1049/1176 (89%), Positives = 1085/1176 (92%), Gaps = 9/1176 (0%) Query: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 MLEGCILA S Q +S TNNSVPGAPNR+SFAKLREPLEVPGLLDVQT+SFEWL+G++ Sbjct: 1 MLEGCILAGSRQIEST--TNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFEWLIGAED 58 Query: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 W Q A+DRG+ +P GGL+EVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMTY Sbjct: 59 WFQRAVDRGDVDPKGGLQEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTY 118 Query: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE Sbjct: 119 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 178 Query: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 +IDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV Sbjct: 179 SIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 238 Query: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 ERFGFSEIMM TLEKD T+GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA Sbjct: 239 ERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 298 Query: 301 RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXX 360 RVGRYKVNKKLGLN G+PITSSTLTEEDVVATIEYLVRLH+G +MT Sbjct: 299 RVGRYKVNKKLGLNVGQPITSSTLTEEDVVATIEYLVRLHQGDQTMTAPGGSEVPVEVDD 358 Query: 361 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 420 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE Sbjct: 359 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE 418 Query: 421 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP 480 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIETP Sbjct: 419 FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETP 478 Query: 481 EGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTD 540 EGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+DQIDYLTADEEDRHVVAQANSP D Sbjct: 479 EGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLTADEEDRHVVAQANSPLD 538 Query: 541 ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 600 +GRF E+RV+VR+KGGEVEFVSA +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA Sbjct: 539 GDGRFEEERVLVRRKGGEVEFVSASEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA 598 Query: 601 NMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQS 660 NMQRQAVPLVRSEAPLVGTGMELR K GV+EEVSADYITVMADDGTR + Sbjct: 599 NMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVTDKAGVVEEVSADYITVMADDGTRHT 658 Query: 661 YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH 720 YR+RKFARSNHGTCANQRPIVDAGQRVE GQV+ADGPCT+NGEMALGKNLLVAIMPWEGH Sbjct: 659 YRMRKFARSNHGTCANQRPIVDAGQRVETGQVLADGPCTENGEMALGKNLLVAIMPWEGH 718 Query: 721 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 780 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI Sbjct: 719 NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI 778 Query: 781 VRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIG 840 +RIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIG Sbjct: 779 IRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIG 838 Query: 841 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 900 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD Sbjct: 839 IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD 898 Query: 901 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAG-------VPDWASKLPEE 953 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNI +A+ VP WA+KLPE Sbjct: 899 GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIRLASDGADGSTEVPAWAAKLPEH 958 Query: 954 LYSAPADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYP 1013 + SAPADS VATPVFD +TLPNRDGE MV++DGK+ LFDGRSGEPFPYP Sbjct: 959 MLSAPADSIVATPVFDGAQEGELQGLLGATLPNRDGETMVNSDGKAVLFDGRSGEPFPYP 1018 Query: 1014 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1073 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1019 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1078 Query: 1074 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1133 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1079 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1138 Query: 1134 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA Sbjct: 1139 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1174 >sp|B2HSJ3|RPOB_MYCMM Tax_Id=216594 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium marinum] Length = 1176 Score = 2055 bits (5324), Expect = 0.0 Identities = 1043/1176 (88%), Positives = 1080/1176 (91%), Gaps = 7/1176 (0%) Query: 1 MLEGCILAVSSQSKSN-------AITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 53 MLEG ILA Q+ ++ + +N+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE Sbjct: 1 MLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 Query: 54 WLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDEC 113 WL+GS RWR++A RG+ PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDEC Sbjct: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 Query: 114 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 173 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 Query: 174 PGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 233 PGVYFDETIDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 Query: 234 WTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 293 W+NEQI ERFGFSEIMMGTLEKD T+GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 Query: 294 EKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXX 353 EKRYDLARVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 Query: 354 XXXXXXXIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 413 IDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRP Sbjct: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRP 420 Query: 414 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 473 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR Sbjct: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 Query: 474 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVA 533 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I YLTADEEDRHVVA Sbjct: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 Query: 534 QANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDA 593 QANSP D GRF E RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 Query: 594 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMA 653 NRALMGANMQRQAVPLVRSEAPLVGTGMELR K GVIEEVSADYITVMA Sbjct: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKAGVIEEVSADYITVMA 660 Query: 654 DDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVA 713 DDGTR +YR+RKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCTQNGEMALGKNLLVA Sbjct: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 Query: 714 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 773 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 Query: 774 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 833 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 840 Query: 834 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 893 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 Query: 894 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEE 953 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNIDVA GVP+WA KLPE Sbjct: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 Query: 954 LYSAPADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYP 1013 L SA DS V+TPVFD +TLPNRDGEV+VD DGK+ LFDGRSGEPFPYP Sbjct: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 Query: 1014 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1073 VTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 Query: 1074 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1133 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 Query: 1134 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 AAIE+R+G+DEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 AAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1176 >tr|Q2M4U2|Q2M4U2_9MYCO Tax_Id=319706 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium phocaicum] Length = 1167 Score = 2053 bits (5319), Expect = 0.0 Identities = 1038/1171 (88%), Positives = 1081/1171 (92%), Gaps = 6/1171 (0%) Query: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 MLEG ILAVS +SKS +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWL+GSDR Sbjct: 1 MLEGRILAVSRESKS-VDSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSDR 59 Query: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 WR A+DRG+ NPVGGLEEVLAELSPIEDF+G++SLSFSDPRFDEVKA VDECK+KD TY Sbjct: 60 WRSKAVDRGDINPVGGLEEVLAELSPIEDFAGTLSLSFSDPRFDEVKAPVDECKEKDQTY 119 Query: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMT+ GTFIINGTERVVVSQLVRSPGVYFDE Sbjct: 120 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDE 179 Query: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 IDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV Sbjct: 180 NIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 239 Query: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 ERFGFSEIMMGTLEKD +G DEALLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLA Sbjct: 240 ERFGFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLA 299 Query: 301 RVGRYKVNKKLGLNAGKP--ITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXX 358 RVGRYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 300 RVGRYKVNKKLGLGGANPALVTATTLTEEDVVATIEYLVRLHEGQTTMTAPGGLEVPVEV 359 Query: 359 XXIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAI 418 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAI Sbjct: 360 DDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAI 419 Query: 419 KEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIE 478 KEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIE Sbjct: 420 KEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIE 479 Query: 479 TPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSP 538 TPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +G+VTDQIDYLTADEEDRHVVAQANSP Sbjct: 480 TPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGIVTDQIDYLTADEEDRHVVAQANSP 539 Query: 539 TDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALM 598 D NG FTE++++VR+KGGEVEFVSA+ VDYMDVSPRQMVSVATAMIPFLEHDDANRALM Sbjct: 540 LDANGHFTEEKILVRRKGGEVEFVSANDVDYMDVSPRQMVSVATAMIPFLEHDDANRALM 599 Query: 599 GANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTR 658 GANMQRQAVPLVRSEAPLVGTGMELR K+GVIEEVSADY+TVMADDG+R Sbjct: 600 GANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKSGVIEEVSADYVTVMADDGSR 659 Query: 659 QSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWE 718 +YR+RKF RSNHGTCANQRPIVD+GQRVEAGQVIADGPCT+NGEMALGKNLLVA+MPWE Sbjct: 660 HTYRMRKFNRSNHGTCANQRPIVDSGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWE 719 Query: 719 GHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER 778 GHNYEDAIILS RLVE+DVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER Sbjct: 720 GHNYEDAIILSQRLVEQDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER 779 Query: 779 GIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKV 838 GIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKV Sbjct: 780 GIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKV 839 Query: 839 IGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFL 898 IG+RVFSREDDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP+EDMPF+ Sbjct: 840 IGVRVFSREDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPIEDMPFM 899 Query: 899 PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAP 958 PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNI+ G P+WA+ LPE ++SAP Sbjct: 900 PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIE---GEPEWAANLPEGMHSAP 956 Query: 959 ADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGY 1018 DS VATPVFD STLPNRDG+VMVDADGK+TLFDGRSGEPFPYPVTVGY Sbjct: 957 RDSIVATPVFDGARENELQGLLGSTLPNRDGDVMVDADGKATLFDGRSGEPFPYPVTVGY 1016 Query: 1019 MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQE 1078 MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQE Sbjct: 1017 MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQE 1076 Query: 1079 LLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEM 1138 LLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEM Sbjct: 1077 LLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEM 1136 Query: 1139 RDGDDEDLERAAANLGINLSRNESASVEDLA 1169 RD DDEDLER AANLGINLSRNESASVEDLA Sbjct: 1137 RDSDDEDLERTAANLGINLSRNESASVEDLA 1167 >sp|A0PM24|RPOB_MYCUA Tax_Id=362242 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium ulcerans] Length = 1176 Score = 2052 bits (5317), Expect = 0.0 Identities = 1042/1176 (88%), Positives = 1079/1176 (91%), Gaps = 7/1176 (0%) Query: 1 MLEGCILAVSSQSKSN-------AITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 53 MLEG ILA Q+ ++ + +N+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE Sbjct: 1 MLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 Query: 54 WLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDEC 113 WL+GS RWR++A RG+ PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDEC Sbjct: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 Query: 114 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 173 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMG FPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGGFPMMTEKGTFIINGTERVVVSQLVRS 180 Query: 174 PGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 233 PGVYFDETIDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 Query: 234 WTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 293 W+NEQI ERFGFSEIMMGTLEKD T+GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 Query: 294 EKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXX 353 EKRYDLARVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 Query: 354 XXXXXXXIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 413 IDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRP Sbjct: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRP 420 Query: 414 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 473 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR Sbjct: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 Query: 474 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVA 533 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I YLTADEEDRHVVA Sbjct: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 Query: 534 QANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDA 593 QANSP D GRF E RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 Query: 594 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMA 653 NRALMGANMQRQAVPLVRSEAPLVGTGMELR K GVIEEVSADYITVMA Sbjct: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKAGVIEEVSADYITVMA 660 Query: 654 DDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVA 713 DDGTR +YR+RKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCTQNGEMALGKNLLVA Sbjct: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 Query: 714 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 773 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 Query: 774 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 833 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 840 Query: 834 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 893 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 Query: 894 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEE 953 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNIDVA GVP+WA KLPE Sbjct: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 Query: 954 LYSAPADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYP 1013 L SA DS V+TPVFD +TLPNRDGEV+VD DGK+ LFDGRSGEPFPYP Sbjct: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 Query: 1014 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1073 VTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 Query: 1074 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1133 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 Query: 1134 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 AAIE+R+G+DEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 AAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1176 >tr|Q6YI70|Q6YI70_MYCCH Tax_Id=1774 (rpoB)SubName: Full=RpoB;[Mycobacterium chelonae] Length = 1171 Score = 2049 bits (5308), Expect = 0.0 Identities = 1037/1168 (88%), Positives = 1070/1168 (91%), Gaps = 5/1168 (0%) Query: 4 GCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDRWRQ 63 G ILAVS Q+K++ T NSVPGAP+R+SFAKLREPL VPGLLDVQTDSFEWLVGS RWR+ Sbjct: 7 GPILAVSRQTKTDNATTNSVPGAPSRLSFAKLREPLAVPGLLDVQTDSFEWLVGSPRWRE 66 Query: 64 AAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTYAAP 123 A RGE NP GGLEE+L ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMTYAAP Sbjct: 67 VATARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAP 126 Query: 124 LFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETID 183 LFVTAEFINNNTGEIKSQTVFMGDFPMMTE GTFIINGTERVVVSQLVRSPGVYFDE ID Sbjct: 127 LFVTAEFINNNTGEIKSQTVFMGDFPMMTEMGTFIINGTERVVVSQLVRSPGVYFDENID 186 Query: 184 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF 243 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF Sbjct: 187 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF 246 Query: 244 GFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVG 303 GFSEIMMGTLEKD +G DEALLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVG Sbjct: 247 GFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVG 306 Query: 304 RYKVNKKLGLNAGKP--ITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXXI 361 RYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT+MT I Sbjct: 307 RYKVNKKLGLGGANPALVTATTLTEEDVVATIEYLVRLHEGQTTMTAPGGLEVPVEVDDI 366 Query: 362 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF 421 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF Sbjct: 367 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF 426 Query: 422 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPE 481 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGL+R+RAGLEVRDVHPSHYGRMCPIETPE Sbjct: 427 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPE 486 Query: 482 GPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTDE 541 GPNIGLIGSLSVYARVNPFGFIETPYRKV GVVTD+I YLTADEEDRHVVAQANSP D Sbjct: 487 GPNIGLIGSLSVYARVNPFGFIETPYRKVSEGVVTDEIHYLTADEEDRHVVAQANSPVDA 546 Query: 542 NGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 601 +GRFTED+++VR+KGGEVEFVSA +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN Sbjct: 547 DGRFTEDKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 606 Query: 602 MQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQSY 661 MQRQAVPLVRSEAPLVGTGMELR K GVIEEVSADY+TVMADDGTRQSY Sbjct: 607 MQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKAGVIEEVSADYVTVMADDGTRQSY 666 Query: 662 RLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGHN 721 RLRKFARSNHGTCANQ+PIVD GQRVE GQVIADGPCT+NGEMALGKNLLVA+MPWEGHN Sbjct: 667 RLRKFARSNHGTCANQKPIVDEGQRVEVGQVIADGPCTENGEMALGKNLLVAVMPWEGHN 726 Query: 722 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV 781 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV Sbjct: 727 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV 786 Query: 782 RIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGI 841 RIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIGI Sbjct: 787 RIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGI 846 Query: 842 RVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG 901 RVFSR+DDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG Sbjct: 847 RVFSRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG 906 Query: 902 TPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPADS 961 TPVDIILNTHGVPRRMNIGQILETHLGWVAK GWNI+ G P+WA LPE+L SAPAD+ Sbjct: 907 TPVDIILNTHGVPRRMNIGQILETHLGWVAKTGWNIE---GNPEWAQNLPEDLQSAPADT 963 Query: 962 TVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMYI 1021 ATPVFD STLPNRDGEVMVD DGK+ LFDGRSGEPFPYPVTVGYMYI Sbjct: 964 RTATPVFDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYI 1023 Query: 1022 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1081 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT Sbjct: 1024 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1083 Query: 1082 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDG 1141 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS DGAAIEMRDG Sbjct: 1084 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSKDGAAIEMRDG 1143 Query: 1142 DDEDLERAAANLGINLSRNESASVEDLA 1169 DDEDLERAAANLGINLSRNESAS+ED A Sbjct: 1144 DDEDLERAAANLGINLSRNESASIEDFA 1171 >tr|Q6YI62|Q6YI62_9MYCO Tax_Id=56689 (rpoB)SubName: Full=RpoB;[Mycobacterium mucogenicum] Length = 1167 Score = 2048 bits (5307), Expect = 0.0 Identities = 1037/1171 (88%), Positives = 1081/1171 (92%), Gaps = 6/1171 (0%) Query: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 MLEG ILAVS +SKS +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWL+GSDR Sbjct: 1 MLEGRILAVSRESKS-VDSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSDR 59 Query: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 WR A+DRG+ NPVGGLEEVLAELSPIEDF+G++SLSFSDPRFDEVKA VDECK+KD TY Sbjct: 60 WRSKAVDRGDINPVGGLEEVLAELSPIEDFAGTLSLSFSDPRFDEVKAPVDECKEKDQTY 119 Query: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE Sbjct: 120 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 179 Query: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 +IDK+TEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI Sbjct: 180 SIDKATEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIR 239 Query: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 ERFGFSEIMMGTLEKD T+G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA Sbjct: 240 ERFGFSEIMMGTLEKDPTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 299 Query: 301 RVGRYKVNKKLGLNAGKP--ITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXX 358 RVGRYKVNKKLGL+ G P +T++TLTEED+VATIEYLVRLH+G +MT Sbjct: 300 RVGRYKVNKKLGLHDGNPAQVTATTLTEEDIVATIEYLVRLHDGDKTMTAPGGVEVPVEV 359 Query: 359 XXIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAI 418 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAI Sbjct: 360 DDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAI 419 Query: 419 KEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIE 478 KEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIE Sbjct: 420 KEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIE 479 Query: 479 TPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSP 538 TPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +G+VTDQIDYLTADEEDRHVVAQANSP Sbjct: 480 TPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGIVTDQIDYLTADEEDRHVVAQANSP 539 Query: 539 TDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALM 598 D NG FTE++++VR+KGGEVEFVSA+ VDYMDVSPRQMVSVATAMIPFLEHDDANRALM Sbjct: 540 LDANGHFTEEKILVRRKGGEVEFVSANDVDYMDVSPRQMVSVATAMIPFLEHDDANRALM 599 Query: 599 GANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTR 658 GANMQRQAVPLVRSEAPLVGTGMELR K+GVIEEVSADY+TVMADDG+R Sbjct: 600 GANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKSGVIEEVSADYVTVMADDGSR 659 Query: 659 QSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWE 718 +YR+RKF RSNHGTCANQRPIVD+GQRVEAGQVIADGPCT+NGEMALGKNLLVA+MPWE Sbjct: 660 HTYRMRKFNRSNHGTCANQRPIVDSGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWE 719 Query: 719 GHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER 778 GHNYEDAIILS RLVE+DVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER Sbjct: 720 GHNYEDAIILSQRLVEQDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER 779 Query: 779 GIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKV 838 GIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKV Sbjct: 780 GIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKV 839 Query: 839 IGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFL 898 IG+RVFSREDDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPF+ Sbjct: 840 IGVRVFSREDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPQEDMPFM 899 Query: 899 PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAP 958 PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNI+ G P+WA+ LPE + SAP Sbjct: 900 PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIE---GEPEWAANLPEGMRSAP 956 Query: 959 ADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGY 1018 DS VATPVFD +TLPNRDGEVMVDADGKS LFDGRSGEPFPYPVTVGY Sbjct: 957 RDSIVATPVFDGARENELQGLLGATLPNRDGEVMVDADGKSQLFDGRSGEPFPYPVTVGY 1016 Query: 1019 MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQE 1078 MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQE Sbjct: 1017 MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQE 1076 Query: 1079 LLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEM 1138 LLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEM Sbjct: 1077 LLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEM 1136 Query: 1139 RDGDDEDLERAAANLGINLSRNESASVEDLA 1169 RD DDEDLER AANLGINLSRNESASVEDLA Sbjct: 1137 RDSDDEDLERTAANLGINLSRNESASVEDLA 1167 >tr|Q6X0L5|Q6X0L5_9MYCO Tax_Id=83262 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium immunogenum] Length = 1171 Score = 2048 bits (5307), Expect = 0.0 Identities = 1035/1168 (88%), Positives = 1071/1168 (91%), Gaps = 5/1168 (0%) Query: 4 GCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDRWRQ 63 G ILAVS Q+K++ T NSVPGAPNR+SFAKLREPL VPGLLDVQTDSFEWLVGS RWR+ Sbjct: 7 GPILAVSRQTKTDNATTNSVPGAPNRLSFAKLREPLAVPGLLDVQTDSFEWLVGSPRWRE 66 Query: 64 AAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTYAAP 123 A RGE NP GGLEE+L ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMTYAAP Sbjct: 67 VATARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAP 126 Query: 124 LFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETID 183 LFVTAEFINNNTGEIKSQTVFMGDFPMMT+ GTFIINGTERVVVSQLVRSPGVYFDE ID Sbjct: 127 LFVTAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDENID 186 Query: 184 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF 243 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF Sbjct: 187 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF 246 Query: 244 GFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVG 303 GFSEIMMGTLEKD +G DEALLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVG Sbjct: 247 GFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVG 306 Query: 304 RYKVNKKLGLNAGKP--ITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXXI 361 RYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT+MT I Sbjct: 307 RYKVNKKLGLGGTNPAQVTTTTLTEEDVVATIEYLVRLHEGQTTMTAPGGVEVPVDVDDI 366 Query: 362 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF 421 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF Sbjct: 367 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF 426 Query: 422 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPE 481 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGL+R+RAGLEVRDVHPSHYGRMCPIETPE Sbjct: 427 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPE 486 Query: 482 GPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTDE 541 GPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTD+I YLTADEEDRHVVAQANSP D Sbjct: 487 GPNIGLIGSLSVYARVNPFGFIETPYRKVSDGVVTDEIHYLTADEEDRHVVAQANSPVDA 546 Query: 542 NGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 601 NGRFTE++++VR+KGGEVEFVSA +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN Sbjct: 547 NGRFTEEKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 606 Query: 602 MQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQSY 661 MQRQAVPLVRSEAPLVGTGMELR K GVIEEVSADY+TVMADDGTRQSY Sbjct: 607 MQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKAGVIEEVSADYVTVMADDGTRQSY 666 Query: 662 RLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGHN 721 RLRKFARSNHGTCANQ+PIVD GQRVE GQV+ADGPCT+NGEMALGKNLLVA+MPWEGHN Sbjct: 667 RLRKFARSNHGTCANQKPIVDEGQRVEVGQVLADGPCTENGEMALGKNLLVAVMPWEGHN 726 Query: 722 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV 781 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV Sbjct: 727 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV 786 Query: 782 RIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGI 841 RIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIGI Sbjct: 787 RIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGI 846 Query: 842 RVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG 901 RVFSR+DDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG Sbjct: 847 RVFSRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG 906 Query: 902 TPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPADS 961 TPVDIILNTHGVPRRMNIGQILETHLGW+AK GWNI+ G P+WA LPE+L SAPAD+ Sbjct: 907 TPVDIILNTHGVPRRMNIGQILETHLGWIAKTGWNIE---GDPEWAQNLPEDLQSAPADT 963 Query: 962 TVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMYI 1021 ATPVFD STLPNRDGEVMVD DGK+ LFDGRSGEPFPYPVTVGYMYI Sbjct: 964 RTATPVFDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYI 1023 Query: 1022 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1081 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT Sbjct: 1024 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1083 Query: 1082 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDG 1141 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS DGAAIEMRDG Sbjct: 1084 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSKDGAAIEMRDG 1143 Query: 1142 DDEDLERAAANLGINLSRNESASVEDLA 1169 DDEDLERAAANLGINLSRNESAS+ED A Sbjct: 1144 DDEDLERAAANLGINLSRNESASIEDFA 1171 >tr|Q2M4U3|Q2M4U3_9MYCO Tax_Id=319705 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium bolletii] Length = 1171 Score = 2048 bits (5305), Expect = 0.0 Identities = 1035/1168 (88%), Positives = 1073/1168 (91%), Gaps = 5/1168 (0%) Query: 4 GCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDRWRQ 63 G ILAVS Q+K++ T NSVPGAP+R+SFAKLREPL VPGLLDVQT+SFEWLVGS RWR+ Sbjct: 7 GPILAVSRQTKTDNATTNSVPGAPSRLSFAKLREPLAVPGLLDVQTESFEWLVGSPRWRE 66 Query: 64 AAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTYAAP 123 A RGE NP GGLEE+L ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMTYAAP Sbjct: 67 VATARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAP 126 Query: 124 LFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETID 183 LFVTAEFINNNTGEIKSQTVFMGDFPMMT+ GTFIINGTERVVVSQLVRSPGVYFDE+ID Sbjct: 127 LFVTAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDESID 186 Query: 184 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF 243 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF Sbjct: 187 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF 246 Query: 244 GFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVG 303 GFSEIMMGTLEKD +G DEALLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVG Sbjct: 247 GFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVG 306 Query: 304 RYKVNKKLGLNAGKP--ITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXXI 361 RYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT+MT I Sbjct: 307 RYKVNKKLGLGGTNPAQVTTTTLTEEDVVATIEYLVRLHEGQTTMTAPGGVEVPVDVDDI 366 Query: 362 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF 421 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF Sbjct: 367 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF 426 Query: 422 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPE 481 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGL+R+RAGLEVRDVHPSHYGRMCPIETPE Sbjct: 427 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPE 486 Query: 482 GPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTDE 541 GPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTD+I YLTADEEDRHVVAQANSP D Sbjct: 487 GPNIGLIGSLSVYARVNPFGFIETPYRKVSDGVVTDEIHYLTADEEDRHVVAQANSPVDA 546 Query: 542 NGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 601 NGRFTE++++VR+KGGEVEFVSA +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN Sbjct: 547 NGRFTEEKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 606 Query: 602 MQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQSY 661 MQRQAVPLVRSEAPLVGTGMELR K GVIEEVSADY+TVMADDGTRQSY Sbjct: 607 MQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKAGVIEEVSADYVTVMADDGTRQSY 666 Query: 662 RLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGHN 721 RLRKFARSNHGTCANQ+PIVD GQRVEAGQVIADGPCT+NGEMALGKNLLVA+MPWEGHN Sbjct: 667 RLRKFARSNHGTCANQKPIVDEGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWEGHN 726 Query: 722 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV 781 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV Sbjct: 727 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV 786 Query: 782 RIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGI 841 RIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIGI Sbjct: 787 RIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGI 846 Query: 842 RVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG 901 RVFSR+DDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG Sbjct: 847 RVFSRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG 906 Query: 902 TPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPADS 961 TPVDIILNTHGVPRRMNIGQILETHLGW+AK GWNI+ G P+WA LPE+L SAPAD+ Sbjct: 907 TPVDIILNTHGVPRRMNIGQILETHLGWIAKTGWNIE---GDPEWAQNLPEDLQSAPADT 963 Query: 962 TVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMYI 1021 ATPVFD STLPNRDGEVMVD DGK+ LFDGRSGEPFPYPVTVGYMYI Sbjct: 964 RTATPVFDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYI 1023 Query: 1022 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1081 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT Sbjct: 1024 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1083 Query: 1082 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDG 1141 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS DGAAIEMRDG Sbjct: 1084 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSKDGAAIEMRDG 1143 Query: 1142 DDEDLERAAANLGINLSRNESASVEDLA 1169 DDEDLERAAANLGINLSRNESAS+ED A Sbjct: 1144 DDEDLERAAANLGINLSRNESASIEDFA 1171 >tr|Q5QGG0|Q5QGG0_9MYCO Tax_Id=281216 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium massiliense] Length = 1171 Score = 2047 bits (5304), Expect = 0.0 Identities = 1034/1168 (88%), Positives = 1073/1168 (91%), Gaps = 5/1168 (0%) Query: 4 GCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDRWRQ 63 G ILAVS Q+K++ T NSVPGAP+R+SFAKLREPL VPGLLDVQT+SFEWLVGS RWR+ Sbjct: 7 GPILAVSRQTKTDNATTNSVPGAPSRLSFAKLREPLAVPGLLDVQTESFEWLVGSPRWRE 66 Query: 64 AAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTYAAP 123 A RGE NP GGLEE+L ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMTYAAP Sbjct: 67 VATARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAP 126 Query: 124 LFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETID 183 LFVTAEFINNNTGEIKSQTVFMGDFPMMT+ GTFIINGTERVVVSQLVRSPGVYFDE+ID Sbjct: 127 LFVTAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDESID 186 Query: 184 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF 243 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF Sbjct: 187 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF 246 Query: 244 GFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVG 303 GFSEIMMGTLEKD +G DEALLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVG Sbjct: 247 GFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVG 306 Query: 304 RYKVNKKLGLNAGKP--ITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXXI 361 RYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT+MT I Sbjct: 307 RYKVNKKLGLGGTNPAQVTTTTLTEEDVVATIEYLVRLHEGQTTMTAPGGVEVPVDVDDI 366 Query: 362 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF 421 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF Sbjct: 367 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF 426 Query: 422 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPE 481 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGL+R+RAGLEVRDVHPSHYGRMCPIETPE Sbjct: 427 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPE 486 Query: 482 GPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTDE 541 GPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTD+I YLTADEEDRHVVAQANSP D Sbjct: 487 GPNIGLIGSLSVYARVNPFGFIETPYRKVSDGVVTDEIHYLTADEEDRHVVAQANSPVDA 546 Query: 542 NGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 601 NGRFTE++++VR+KGGEVEFVSA +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN Sbjct: 547 NGRFTEEKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 606 Query: 602 MQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQSY 661 MQRQAVPLVRSEAPLVGTGMELR K GVIEEVSADY+TVMADDGTRQSY Sbjct: 607 MQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKAGVIEEVSADYVTVMADDGTRQSY 666 Query: 662 RLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGHN 721 RLRKFARSNHGTCANQ+PIVD GQRVEAGQV+ADGPCT+NGEMALGKNLLVA+MPWEGHN Sbjct: 667 RLRKFARSNHGTCANQKPIVDEGQRVEAGQVVADGPCTENGEMALGKNLLVAVMPWEGHN 726 Query: 722 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV 781 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV Sbjct: 727 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV 786 Query: 782 RIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGI 841 RIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIGI Sbjct: 787 RIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGI 846 Query: 842 RVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG 901 RVFSR+DDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG Sbjct: 847 RVFSRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG 906 Query: 902 TPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPADS 961 TPVDIILNTHGVPRRMNIGQILETHLGW+AK GWNI+ G P+WA LPE+L SAPAD+ Sbjct: 907 TPVDIILNTHGVPRRMNIGQILETHLGWIAKTGWNIE---GDPEWAQNLPEDLQSAPADT 963 Query: 962 TVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMYI 1021 ATPVFD STLPNRDGEVMVD DGK+ LFDGRSGEPFPYPVTVGYMYI Sbjct: 964 RTATPVFDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYI 1023 Query: 1022 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1081 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT Sbjct: 1024 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1083 Query: 1082 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDG 1141 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS DGAAIEMRDG Sbjct: 1084 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSKDGAAIEMRDG 1143 Query: 1142 DDEDLERAAANLGINLSRNESASVEDLA 1169 DDEDLERAAANLGINLSRNESAS+ED A Sbjct: 1144 DDEDLERAAANLGINLSRNESASIEDFA 1171 >tr|Q6YI63|Q6YI63_9MYCO Tax_Id=56689 (rpoB)SubName: Full=RpoB;[Mycobacterium mucogenicum] Length = 1167 Score = 2047 bits (5303), Expect = 0.0 Identities = 1036/1171 (88%), Positives = 1080/1171 (92%), Gaps = 6/1171 (0%) Query: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 MLEG ILAVS +SKS +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWL+GSDR Sbjct: 1 MLEGRILAVSRESKS-VDSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSDR 59 Query: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 WR A+DRG+ NPVGGLEEVLAELSPIEDF+G++SLSFSDPRFDEVKA VDECK+KD TY Sbjct: 60 WRSKAVDRGDINPVGGLEEVLAELSPIEDFAGTLSLSFSDPRFDEVKAPVDECKEKDQTY 119 Query: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 AAPLFVTAEFINN TGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE Sbjct: 120 AAPLFVTAEFINNTTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 179 Query: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 +IDK+TEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI Sbjct: 180 SIDKATEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIR 239 Query: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 ERFGFSEIMMGTLEKD T+G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA Sbjct: 240 ERFGFSEIMMGTLEKDPTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 299 Query: 301 RVGRYKVNKKLGLNAGKP--ITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXX 358 RVGRYKVNKKLGL+ G P +T++TLTEED+VATIEYLVRLH+G T MT Sbjct: 300 RVGRYKVNKKLGLHDGNPAQVTATTLTEEDIVATIEYLVRLHDGDTKMTAPGGVEVPVEV 359 Query: 359 XXIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAI 418 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAI Sbjct: 360 DDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAI 419 Query: 419 KEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIE 478 KEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIE Sbjct: 420 KEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIE 479 Query: 479 TPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSP 538 TPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +G+VTDQIDYLTADEEDRHVVAQANSP Sbjct: 480 TPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGIVTDQIDYLTADEEDRHVVAQANSP 539 Query: 539 TDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALM 598 D NG FTE++++VR+KGGEVEFVSA+ VDYMDVSPRQMVSVATAMIPFLEHDDANRALM Sbjct: 540 LDANGHFTEEKILVRRKGGEVEFVSANDVDYMDVSPRQMVSVATAMIPFLEHDDANRALM 599 Query: 599 GANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTR 658 GANMQRQAVPLVRSEAPLVGTGMELR K+GVIEEVSADY+TVMADDG+R Sbjct: 600 GANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKSGVIEEVSADYVTVMADDGSR 659 Query: 659 QSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWE 718 +YR+RKF RSNHGTCANQRPIVD+GQRVEAGQVIADGPCT+NGEMALGKNLLVA+MPWE Sbjct: 660 HTYRMRKFNRSNHGTCANQRPIVDSGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWE 719 Query: 719 GHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER 778 GHNYEDAIILS RLVE+DVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER Sbjct: 720 GHNYEDAIILSQRLVEQDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER 779 Query: 779 GIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKV 838 GIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKV Sbjct: 780 GIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKV 839 Query: 839 IGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFL 898 IG+RVFSREDDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPF+ Sbjct: 840 IGVRVFSREDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPQEDMPFM 899 Query: 899 PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAP 958 PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNI+ G P+WA+ LPE + SAP Sbjct: 900 PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIE---GEPEWAANLPEGMRSAP 956 Query: 959 ADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGY 1018 DS VATPVFD +TLPNRDG+VMVDADGKS LFDGRSGEPFPYPVTVGY Sbjct: 957 RDSIVATPVFDGARENELQGLLGATLPNRDGDVMVDADGKSQLFDGRSGEPFPYPVTVGY 1016 Query: 1019 MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQE 1078 MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQE Sbjct: 1017 MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQE 1076 Query: 1079 LLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEM 1138 LLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEM Sbjct: 1077 LLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEM 1136 Query: 1139 RDGDDEDLERAAANLGINLSRNESASVEDLA 1169 RD DDEDLER AANLGINLSRNESASVEDLA Sbjct: 1137 RDSDDEDLERTAANLGINLSRNESASVEDLA 1167 >tr|Q6X0L4|Q6X0L4_MYCCH Tax_Id=1774 SubName: Full=RpoB;[Mycobacterium chelonae] Length = 1171 Score = 2046 bits (5301), Expect = 0.0 Identities = 1035/1168 (88%), Positives = 1070/1168 (91%), Gaps = 5/1168 (0%) Query: 4 GCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDRWRQ 63 G ILAVS Q+K++ T NSVPGAP+R+SFAKLREPL VPGLLDVQT+SFEWLVGS RWR+ Sbjct: 7 GPILAVSRQTKTDNATTNSVPGAPSRLSFAKLREPLAVPGLLDVQTESFEWLVGSPRWRE 66 Query: 64 AAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTYAAP 123 A RGE NP GGLEE+L ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMTYAAP Sbjct: 67 VATARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAP 126 Query: 124 LFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETID 183 LFVTAEFINNNTGEIKSQTVFMGDFPMMT+ GTFIINGTERVVVSQLVRSPGVYFDE ID Sbjct: 127 LFVTAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDENID 186 Query: 184 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF 243 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF Sbjct: 187 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF 246 Query: 244 GFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVG 303 GFSEIMMGTLEKD +G DEALLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVG Sbjct: 247 GFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVG 306 Query: 304 RYKVNKKLGLNAGKP--ITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXXI 361 RYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT+MT I Sbjct: 307 RYKVNKKLGLGGANPALVTATTLTEEDVVATIEYLVRLHEGQTTMTAPGGLEVPVEVDDI 366 Query: 362 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF 421 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF Sbjct: 367 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF 426 Query: 422 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPE 481 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGL+R+RAGLEVRDVHPSHYGRMCPIETPE Sbjct: 427 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPE 486 Query: 482 GPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTDE 541 GPNIGLIGSLSVYARVNPFGFIETPYRKV GVVTD+I YLTADEEDRHVVAQANSP D Sbjct: 487 GPNIGLIGSLSVYARVNPFGFIETPYRKVSEGVVTDEIHYLTADEEDRHVVAQANSPVDA 546 Query: 542 NGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 601 +GRFTED+++VR+KGGEVEFVSA +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN Sbjct: 547 DGRFTEDKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 606 Query: 602 MQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQSY 661 MQRQAVPLVRSEAPLVGTGMELR K GVIEEVSADY+TVMADDGTRQSY Sbjct: 607 MQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKAGVIEEVSADYVTVMADDGTRQSY 666 Query: 662 RLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGHN 721 RLRKFARSNHGTCANQ+PIVD GQRVE GQVIADGPCT+NGEMALGKNLLVA+MPWEGHN Sbjct: 667 RLRKFARSNHGTCANQKPIVDEGQRVEVGQVIADGPCTENGEMALGKNLLVAVMPWEGHN 726 Query: 722 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV 781 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV Sbjct: 727 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV 786 Query: 782 RIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGI 841 RIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIGI Sbjct: 787 RIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGI 846 Query: 842 RVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG 901 RVFSR+DDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG Sbjct: 847 RVFSRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG 906 Query: 902 TPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPADS 961 TPVDIILNTHGVPRRMNIGQILETHLGWVAK GWNI+ G P+WA LPE+L SAPAD+ Sbjct: 907 TPVDIILNTHGVPRRMNIGQILETHLGWVAKTGWNIE---GNPEWAQNLPEDLQSAPADT 963 Query: 962 TVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMYI 1021 ATPVFD STLPNRDGEVMVD DGK+ LFDGRSGEPFPYPVTVGYMYI Sbjct: 964 RTATPVFDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYI 1023 Query: 1022 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1081 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT Sbjct: 1024 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1083 Query: 1082 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDG 1141 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS DGAAIEMRDG Sbjct: 1084 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSKDGAAIEMRDG 1143 Query: 1142 DDEDLERAAANLGINLSRNESASVEDLA 1169 DDEDLERAAANLGINLSRNESAS+ED A Sbjct: 1144 DDEDLERAAANLGINLSRNESASIEDFA 1171 >tr|Q6YI59|Q6YI59_9MYCO Tax_Id=56689 (rpoB)SubName: Full=RpoB;[Mycobacterium mucogenicum] Length = 1184 Score = 2046 bits (5300), Expect = 0.0 Identities = 1034/1171 (88%), Positives = 1081/1171 (92%), Gaps = 6/1171 (0%) Query: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 +LEG ILAVS +SKS +NNSVPGAPNRVSFAKLREPLEVPGLL+VQTDSFEWL+GSDR Sbjct: 18 VLEGRILAVSRESKS-VDSNNSVPGAPNRVSFAKLREPLEVPGLLEVQTDSFEWLIGSDR 76 Query: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 WR A+DRG+ NPVGGLEEVLAELSPIEDF+G++SLSFSDPRFDEVKA VDECK+KD TY Sbjct: 77 WRSKAVDRGDINPVGGLEEVLAELSPIEDFAGTLSLSFSDPRFDEVKAPVDECKEKDQTY 136 Query: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 AAPLFVTAEFINN TGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE Sbjct: 137 AAPLFVTAEFINNTTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 196 Query: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 +IDK+TEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI Sbjct: 197 SIDKATEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIR 256 Query: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 ERFGFSEIMMGTLEKD T+G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA Sbjct: 257 ERFGFSEIMMGTLEKDPTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 316 Query: 301 RVGRYKVNKKLGLNAGKP--ITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXX 358 RVGRYKVNKKLGL+ G P +T++TLTEED+VATIEYLVRLH+G T MT Sbjct: 317 RVGRYKVNKKLGLHDGNPAQVTATTLTEEDIVATIEYLVRLHDGDTKMTAPGGVEVPVEV 376 Query: 359 XXIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAI 418 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAI Sbjct: 377 DDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAI 436 Query: 419 KEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIE 478 KEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIE Sbjct: 437 KEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIE 496 Query: 479 TPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSP 538 TPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +G+VTDQIDYLTADEEDRHVVAQANSP Sbjct: 497 TPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGIVTDQIDYLTADEEDRHVVAQANSP 556 Query: 539 TDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALM 598 D NG FTE++++VR+KGGEVEFVSA+ VDYMDVSPRQMVSVATAMIPFLEHDDANRALM Sbjct: 557 LDANGHFTEEKILVRRKGGEVEFVSANDVDYMDVSPRQMVSVATAMIPFLEHDDANRALM 616 Query: 599 GANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTR 658 GANMQRQAVPLVRSEAPLVGTGMELR K+GVIEEVSADY+TVMADDG+R Sbjct: 617 GANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKSGVIEEVSADYVTVMADDGSR 676 Query: 659 QSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWE 718 +YR+RKF RSNHGTCANQRPIVD+GQRVEAGQVIADGPCT+NGEMALGKNLLVA+MPWE Sbjct: 677 HTYRMRKFNRSNHGTCANQRPIVDSGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWE 736 Query: 719 GHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER 778 GHNYEDAIILS RLVE+DVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER Sbjct: 737 GHNYEDAIILSQRLVEQDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER 796 Query: 779 GIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKV 838 GIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKV Sbjct: 797 GIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKV 856 Query: 839 IGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFL 898 IG+RVFSREDDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP+EDMPF+ Sbjct: 857 IGVRVFSREDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPIEDMPFM 916 Query: 899 PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAP 958 PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNI+ G P+WA+ LPE + SAP Sbjct: 917 PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIE---GEPEWAANLPEGMRSAP 973 Query: 959 ADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGY 1018 DS VATPVFD +TLPNRDG+VMVDADGKS LFDGRSGEPFPYPVTVGY Sbjct: 974 RDSIVATPVFDGARENELQGLLGATLPNRDGDVMVDADGKSQLFDGRSGEPFPYPVTVGY 1033 Query: 1019 MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQE 1078 MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQE Sbjct: 1034 MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQE 1093 Query: 1079 LLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEM 1138 LLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEM Sbjct: 1094 LLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEM 1153 Query: 1139 RDGDDEDLERAAANLGINLSRNESASVEDLA 1169 RD DDEDLER AANLGINLSRNESASVEDLA Sbjct: 1154 RDSDDEDLERTAANLGINLSRNESASVEDLA 1184 >tr|Q6X0L3|Q6X0L3_MYCAB Tax_Id=36809 SubName: Full=RpoB;[Mycobacterium abscessus] Length = 1171 Score = 2046 bits (5300), Expect = 0.0 Identities = 1034/1168 (88%), Positives = 1073/1168 (91%), Gaps = 5/1168 (0%) Query: 4 GCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDRWRQ 63 G ILAVS Q+K++ T NSVPGAP+R+SFAKLREPL VPGLLDVQT+SFEWLVGS RWR+ Sbjct: 7 GPILAVSRQTKTDNATTNSVPGAPSRLSFAKLREPLAVPGLLDVQTESFEWLVGSPRWRE 66 Query: 64 AAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTYAAP 123 A RGE NP GGLEE+L ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMTYAAP Sbjct: 67 VATARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAP 126 Query: 124 LFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETID 183 LFVTAEFINNNTGEIKSQTVFMGDFPMMT+ GTFIINGTERVVVSQLVRSPGVYFDE+ID Sbjct: 127 LFVTAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDESID 186 Query: 184 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF 243 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF Sbjct: 187 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF 246 Query: 244 GFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVG 303 GFSEIMMGTLEKD +G DEALLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVG Sbjct: 247 GFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVG 306 Query: 304 RYKVNKKLGLNAGKP--ITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXXI 361 RYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT+MT I Sbjct: 307 RYKVNKKLGLGGTNPAQVTTTTLTEEDVVATIEYLVRLHEGQTTMTAPGGVEVPVDVDDI 366 Query: 362 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF 421 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF Sbjct: 367 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF 426 Query: 422 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPE 481 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGL+R+RAGLEVRDVHPSHYGRMCPIETPE Sbjct: 427 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPE 486 Query: 482 GPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTDE 541 GPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTD+I YLTADEEDRHVVAQANSP D Sbjct: 487 GPNIGLIGSLSVYARVNPFGFIETPYRKVSDGVVTDEIHYLTADEEDRHVVAQANSPVDA 546 Query: 542 NGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 601 NGRFTE++++VR+KGGEVEFVSA +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN Sbjct: 547 NGRFTEEKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 606 Query: 602 MQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQSY 661 MQRQAVPLVRSEAPLVGTGMELR K GVIEEVSADY+TVMADDGTRQSY Sbjct: 607 MQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKAGVIEEVSADYVTVMADDGTRQSY 666 Query: 662 RLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGHN 721 RLRKFARSNHGTCANQ+PIVD GQRVEAGQVIADGPCT+NGEMALGKNLLVA+MPWEGHN Sbjct: 667 RLRKFARSNHGTCANQKPIVDEGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWEGHN 726 Query: 722 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV 781 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV Sbjct: 727 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV 786 Query: 782 RIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGI 841 RIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIGI Sbjct: 787 RIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGI 846 Query: 842 RVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG 901 RVFSR+DDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG Sbjct: 847 RVFSRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG 906 Query: 902 TPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPADS 961 TPVDIILNTHGVPRRMNIGQILETHLGW+AK GWNI+ G P+WA+ LP +L SAPAD+ Sbjct: 907 TPVDIILNTHGVPRRMNIGQILETHLGWIAKTGWNIE---GEPEWAANLPADLTSAPADT 963 Query: 962 TVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMYI 1021 ATPVFD STLPNRDGEVMVD DGK+ LFDGRSGEPFPYPVTVGYMYI Sbjct: 964 RTATPVFDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYI 1023 Query: 1022 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1081 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT Sbjct: 1024 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1083 Query: 1082 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDG 1141 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS DGAAIEMRDG Sbjct: 1084 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSKDGAAIEMRDG 1143 Query: 1142 DDEDLERAAANLGINLSRNESASVEDLA 1169 DDEDLERAAANLGINLSRNESAS+ED A Sbjct: 1144 DDEDLERAAANLGINLSRNESASIEDFA 1171 >tr|B1MH62|B1MH62_MYCA9 Tax_Id=561007 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium abscessus] Length = 1171 Score = 2045 bits (5298), Expect = 0.0 Identities = 1034/1168 (88%), Positives = 1072/1168 (91%), Gaps = 5/1168 (0%) Query: 4 GCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDRWRQ 63 G ILAVS Q+K++ T NSVPGAP+R+SFAKLREPL VPGLLDVQT+SFEWLVGS RWR+ Sbjct: 7 GPILAVSRQTKTDNATTNSVPGAPSRLSFAKLREPLAVPGLLDVQTESFEWLVGSPRWRE 66 Query: 64 AAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTYAAP 123 A RGE NP GGLEE+L ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMTYAAP Sbjct: 67 VATARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAP 126 Query: 124 LFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETID 183 LFVTAEFINNNTGEIKSQTVFMGDFPMMT+ GTFIINGTERVVVSQLVRSPGVYFDE+ID Sbjct: 127 LFVTAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDESID 186 Query: 184 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF 243 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF Sbjct: 187 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF 246 Query: 244 GFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVG 303 GFSEIMMGTLEKD +G DEALLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVG Sbjct: 247 GFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVG 306 Query: 304 RYKVNKKLGLNAGKP--ITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXXI 361 RYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT+MT I Sbjct: 307 RYKVNKKLGLGGTNPAQVTTTTLTEEDVVATIEYLVRLHEGQTTMTAPGGVEVPVDVDDI 366 Query: 362 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF 421 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF Sbjct: 367 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF 426 Query: 422 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPE 481 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGL+R+RAGLEVRDVHPSHYGRMCPIETPE Sbjct: 427 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPE 486 Query: 482 GPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTDE 541 GPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTD I YLTADEEDRHVVAQANSP D Sbjct: 487 GPNIGLIGSLSVYARVNPFGFIETPYRKVSDGVVTDDIHYLTADEEDRHVVAQANSPVDA 546 Query: 542 NGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 601 NGRFTE++++VR+KGGEVEFVSA +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN Sbjct: 547 NGRFTEEKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 606 Query: 602 MQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQSY 661 MQRQAVPLVRSEAPLVGTGMELR K GVIEEVSADY+TVMADDGTRQSY Sbjct: 607 MQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKAGVIEEVSADYVTVMADDGTRQSY 666 Query: 662 RLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGHN 721 RLRKFARSNHGTCANQ+PIVD GQRVEAGQVIADGPCT+NGEMALGKNLLVA+MPWEGHN Sbjct: 667 RLRKFARSNHGTCANQKPIVDEGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWEGHN 726 Query: 722 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV 781 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV Sbjct: 727 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV 786 Query: 782 RIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGI 841 RIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIGI Sbjct: 787 RIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGI 846 Query: 842 RVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG 901 RVFSR+DDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG Sbjct: 847 RVFSRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG 906 Query: 902 TPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPADS 961 TPVDIILNTHGVPRRMNIGQILETHLGW+AK GWNI+ G P+WA+ LP +L SAPAD+ Sbjct: 907 TPVDIILNTHGVPRRMNIGQILETHLGWIAKTGWNIE---GEPEWAANLPADLTSAPADT 963 Query: 962 TVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMYI 1021 ATPVFD STLPNRDGEVMVD DGK+ LFDGRSGEPFPYPVTVGYMYI Sbjct: 964 RTATPVFDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYI 1023 Query: 1022 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1081 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT Sbjct: 1024 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1083 Query: 1082 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDG 1141 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS DGAAIEMRDG Sbjct: 1084 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSKDGAAIEMRDG 1143 Query: 1142 DDEDLERAAANLGINLSRNESASVEDLA 1169 DDEDLERAAANLGINLSRNESAS+ED A Sbjct: 1144 DDEDLERAAANLGINLSRNESASIEDFA 1171 >tr|Q6YI69|Q6YI69_MYCAB Tax_Id=36809 (rpoB)SubName: Full=RpoB;[Mycobacterium abscessus] Length = 1171 Score = 2045 bits (5298), Expect = 0.0 Identities = 1034/1168 (88%), Positives = 1072/1168 (91%), Gaps = 5/1168 (0%) Query: 4 GCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDRWRQ 63 G ILAVS Q+K++ T NSVPGAP+R+SFAKLREPL VPGLLDVQT+SFEWLVGS RWR+ Sbjct: 7 GPILAVSRQTKTDNATTNSVPGAPSRLSFAKLREPLAVPGLLDVQTESFEWLVGSPRWRE 66 Query: 64 AAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTYAAP 123 A RGE NP GGLEE+L ELSPIEDFSGSMSLSFSDPRFDEVKA VDECKDKDMTYAAP Sbjct: 67 VATARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAP 126 Query: 124 LFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETID 183 LFVTAEFINNNTGEIKSQTVFMGDFPMMT+ GTFIINGTERVVVSQLVRSPGVYFDE+ID Sbjct: 127 LFVTAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVVVSQLVRSPGVYFDESID 186 Query: 184 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF 243 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF Sbjct: 187 KSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERF 246 Query: 244 GFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVG 303 GFSEIMMGTLEKD +G DEALLDIYRKLRPGEPPTKESAQ LLENLFFKEKRYDLARVG Sbjct: 247 GFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKRYDLARVG 306 Query: 304 RYKVNKKLGLNAGKP--ITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXXXXI 361 RYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT+MT I Sbjct: 307 RYKVNKKLGLGGTNPAQVTTTTLTEEDVVATIEYLVRLHEGQTTMTAPGGVEVPVDVDDI 366 Query: 362 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF 421 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF Sbjct: 367 DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF 426 Query: 422 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPE 481 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGL+R+RAGLEVRDVHPSHYGRMCPIETPE Sbjct: 427 FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYGRMCPIETPE 486 Query: 482 GPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTDE 541 GPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTD I YLTADEEDRHVVAQANSP D Sbjct: 487 GPNIGLIGSLSVYARVNPFGFIETPYRKVSDGVVTDDIHYLTADEEDRHVVAQANSPVDA 546 Query: 542 NGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 601 NGRFTE++++VR+KGGEVEFVSA +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN Sbjct: 547 NGRFTEEKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN 606 Query: 602 MQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTRQSY 661 MQRQAVPLVRSEAPLVGTGMELR K GVIEEVSADY+TVMADDGTRQSY Sbjct: 607 MQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKAGVIEEVSADYVTVMADDGTRQSY 666 Query: 662 RLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGHN 721 RLRKFARSNHGTCANQ+PIVD GQRVEAGQVIADGPCT+NGEMALGKNLLVA+MPWEGHN Sbjct: 667 RLRKFARSNHGTCANQKPIVDEGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWEGHN 726 Query: 722 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV 781 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV Sbjct: 727 YEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIV 786 Query: 782 RIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGI 841 RIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKVIGI Sbjct: 787 RIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGI 846 Query: 842 RVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG 901 RVFSR+DDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG Sbjct: 847 RVFSRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDG 906 Query: 902 TPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPADS 961 TPVDIILNTHGVPRRMNIGQILETHLGW+AK GWNI+ G P+WA+ LP +L SAPAD+ Sbjct: 907 TPVDIILNTHGVPRRMNIGQILETHLGWIAKTGWNIE---GEPEWAANLPADLTSAPADT 963 Query: 962 TVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMYI 1021 ATPVFD STLPNRDGEVMVD DGK+ LFDGRSGEPFPYPVTVGYMYI Sbjct: 964 RTATPVFDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYI 1023 Query: 1022 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1081 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT Sbjct: 1024 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1083 Query: 1082 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDG 1141 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS DGAAIEMRDG Sbjct: 1084 IKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSKDGAAIEMRDG 1143 Query: 1142 DDEDLERAAANLGINLSRNESASVEDLA 1169 DDEDLERAAANLGINLSRNESAS+ED A Sbjct: 1144 DDEDLERAAANLGINLSRNESASIEDFA 1171 >tr|Q2M4U1|Q2M4U1_9MYCO Tax_Id=319707 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium aubagnense] Length = 1172 Score = 2043 bits (5293), Expect = 0.0 Identities = 1034/1173 (88%), Positives = 1079/1173 (91%), Gaps = 5/1173 (0%) Query: 1 MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR 60 MLEG ILA S +SKS +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWL+GSDR Sbjct: 1 MLEGRILAASRESKS-VDSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSDR 59 Query: 61 WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY 120 WR A+DRG+ NPVGGLEEVLAELSPIEDF+G++SLSFSDPRFDEVKA VDECK+KD TY Sbjct: 60 WRAKAVDRGDINPVGGLEEVLAELSPIEDFAGTLSLSFSDPRFDEVKAPVDECKEKDQTY 119 Query: 121 AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 180 AAPLFVTAEFINN TGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE Sbjct: 120 AAPLFVTAEFINNTTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE 179 Query: 181 TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV 240 +IDK+TEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI Sbjct: 180 SIDKATEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIR 239 Query: 241 ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 300 ERFGFSEIMMGTLEKD T+G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA Sbjct: 240 ERFGFSEIMMGTLEKDPTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA 299 Query: 301 RVGRYKVNKKLGLNAGKP--ITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXXXXXXXXX 358 RVGRYKVNKKLGL+ G P +T++TLTEED+VATIEYLVRLH+G T MT Sbjct: 300 RVGRYKVNKKLGLHDGNPAQVTATTLTEEDIVATIEYLVRLHDGDTKMTAPGGVEVPVEV 359 Query: 359 XXIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAI 418 IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAI Sbjct: 360 DDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAI 419 Query: 419 KEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIE 478 KEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIE Sbjct: 420 KEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIE 479 Query: 479 TPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSP 538 TPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTDQIDYLTADEEDRHVVAQANSP Sbjct: 480 TPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANSP 539 Query: 539 TDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALM 598 D+ G FTED+++VR+KGGEVEFVSA+ VDYMDVSPRQMVSVATAMIPFLEHDDANRALM Sbjct: 540 LDDGGHFTEDKILVRRKGGEVEFVSANDVDYMDVSPRQMVSVATAMIPFLEHDDANRALM 599 Query: 599 GANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITVMADDGTR 658 GANMQRQAVPLVRSEAPLVGTGMELR K+GVIEEVSADY+TVMADDG+R Sbjct: 600 GANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKSGVIEEVSADYVTVMADDGSR 659 Query: 659 QSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWE 718 +YR+RKF RSNHGTCANQRPIVD+GQRVEAGQVIADGPCT+NGEMALGKNLLVA+MPWE Sbjct: 660 HTYRMRKFNRSNHGTCANQRPIVDSGQRVEAGQVIADGPCTENGEMALGKNLLVAVMPWE 719 Query: 719 GHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER 778 GHNYEDAIILS RLVE+DVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER Sbjct: 720 GHNYEDAIILSQRLVEQDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER 779 Query: 779 GIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKV 838 GIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGKV Sbjct: 780 GIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKV 839 Query: 839 IGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFL 898 IG+RVFSREDDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPF+ Sbjct: 840 IGVRVFSREDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPQEDMPFM 899 Query: 899 PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNI--DVAAGVPDWASKLPEELYS 956 PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNI D P+WA+ LP+ ++S Sbjct: 900 PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIEADANGAYPEWAANLPDGMHS 959 Query: 957 APADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTV 1016 AP DS VATPVFD STLPNRDG+VMVDA+GKS LFDGRSGEPFPYPVTV Sbjct: 960 APRDSIVATPVFDGAREGELEGLLGSTLPNRDGDVMVDAEGKSQLFDGRSGEPFPYPVTV 1019 Query: 1017 GYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTL 1076 GYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTL Sbjct: 1020 GYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTL 1079 Query: 1077 QELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI 1136 QELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI Sbjct: 1080 QELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI 1139 Query: 1137 EMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 EMRD DDEDLER AANLGINLSRNESASVEDLA Sbjct: 1140 EMRDSDDEDLERTAANLGINLSRNESASVEDLA 1172 >sp|Q73SE4|RPOB_MYCPA Tax_Id=1770 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium paratuberculosis] Length = 1175 Score = 2039 bits (5282), Expect = 0.0 Identities = 1039/1178 (88%), Positives = 1072/1178 (91%), Gaps = 12/1178 (1%) Query: 1 MLEGCILAVSSQSKSN---------AITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 51 MLEGCILA QSK++ + N SVPGAPNRVSFAKLREPLEVPGLLDVQ DS Sbjct: 1 MLEGCILADFRQSKTDRPQSSSNGSSSLNGSVPGAPNRVSFAKLREPLEVPGLLDVQIDS 60 Query: 52 FEWLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVD 111 FEWL+G+ RWR+AAI RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VD Sbjct: 61 FEWLIGAPRWREAAIARGDAEPKGGLEEVLDELSPIEDFSGSMSLSFSDPRFDEVKAPVD 120 Query: 112 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 171 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 172 RSPGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 231 RSPGVYFDETIDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 232 LGWTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 291 LGWTNEQI ERFGFSEIMM TLEKD T+GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTNEQITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 292 FKEKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXX 351 FKEKRYDLARVGRYKVNKKLGL+AG+PITSSTLTEEDVVATIEYLVRLHEGQ +MT Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHAGEPITSSTLTEEDVVATIEYLVRLHEGQPTMTVPGG 360 Query: 352 XXXXXXXXXIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 411 IDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINI Sbjct: 361 IEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 412 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 471 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 472 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHV 531 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTD+I YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIHYLTADEEDRHV 540 Query: 532 VAQANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHD 591 VAQANSP D+ GRF E RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDDKGRFAEARVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 592 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITV 651 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR K+GVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKSGVIEEVSADYITV 660 Query: 652 MADDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLL 711 MADDGTR +YR+RKF RSNHGTCANQ PIVDAG RVEAGQVIADGPCT+NGEMALGKNLL Sbjct: 661 MADDGTRHTYRMRKFERSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 Query: 712 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 771 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 Query: 772 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 831 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 832 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 891 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 892 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLP 951 EDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNID G P+WA LP Sbjct: 901 QEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNID---GNPEWAVNLP 957 Query: 952 EELYSAPADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFP 1011 EEL A + V+TPVFD TLPNRDGEVMVD DGK+ LFDGRSGEPFP Sbjct: 958 EELRHAQPNQIVSTPVFDGAKEEELAGMLSCTLPNRDGEVMVDGDGKAVLFDGRSGEPFP 1017 Query: 1012 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1071 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1018 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1077 Query: 1072 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1131 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1078 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1137 Query: 1132 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGAAIE+R+G+DEDLERAAANLGINLSRNESASVEDLA Sbjct: 1138 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1175 >sp|P30760|RPOB_MYCLE Tax_Id=1769 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium leprae] Length = 1178 Score = 2039 bits (5282), Expect = 0.0 Identities = 1034/1178 (87%), Positives = 1073/1178 (91%), Gaps = 9/1178 (0%) Query: 1 MLEGCIL---------AVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 51 MLEGCIL SQS+ + NNSVPGAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILPDFGQSKTDVSPSQSRPQSSPNNSVPGAPNRISFAKLREPLEVPGLLDVQTDS 60 Query: 52 FEWLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVD 111 FEWL+GS WR AA RG+ PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA V+ Sbjct: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 Query: 112 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 171 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 172 RSPGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 231 RSPGVYFDETIDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 232 LGWTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 291 LGWT+EQI ERFGFSEIM TLEKD T GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 292 FKEKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXX 351 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ++MT Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 Query: 352 XXXXXXXXXIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 411 IDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 412 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 471 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 472 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHV 531 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I+YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 Query: 532 VAQANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHD 591 VAQANSP DE GRF E RV+VR+K GEVE+V++ +VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 592 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITV 651 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR K+GVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 Query: 652 MADDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLL 711 MADDGTR++YR+RKFARSNHGTCANQ PIVDAG RVEAGQVIADGPCT+NGEMALGKNLL Sbjct: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 Query: 712 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 771 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 Query: 772 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 831 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 832 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 891 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 892 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLP 951 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW IDVA G+PDWA LP Sbjct: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 Query: 952 EELYSAPADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFP 1011 EEL A + V+TPVFD STLPNRDG+VMV DGK+ LFDGRSGEPFP Sbjct: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 Query: 1012 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1071 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1072 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1131 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1132 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGAAIE+R+G+DEDLERAAANLGINLSRNESAS+EDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASIEDLA 1178 >sp|B8ZSC7|RPOB_MYCLB Tax_Id=561304 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium leprae] Length = 1178 Score = 2039 bits (5282), Expect = 0.0 Identities = 1034/1178 (87%), Positives = 1073/1178 (91%), Gaps = 9/1178 (0%) Query: 1 MLEGCIL---------AVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 51 MLEGCIL SQS+ + NNSVPGAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILPDFGQSKTDVSPSQSRPQSSPNNSVPGAPNRISFAKLREPLEVPGLLDVQTDS 60 Query: 52 FEWLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVD 111 FEWL+GS WR AA RG+ PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA V+ Sbjct: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 Query: 112 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 171 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 172 RSPGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 231 RSPGVYFDETIDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 232 LGWTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 291 LGWT+EQI ERFGFSEIM TLEKD T GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 292 FKEKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXX 351 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ++MT Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 Query: 352 XXXXXXXXXIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 411 IDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 412 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 471 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 472 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHV 531 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I+YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 Query: 532 VAQANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHD 591 VAQANSP DE GRF E RV+VR+K GEVE+V++ +VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 592 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITV 651 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR K+GVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 Query: 652 MADDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLL 711 MADDGTR++YR+RKFARSNHGTCANQ PIVDAG RVEAGQVIADGPCT+NGEMALGKNLL Sbjct: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 Query: 712 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 771 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 Query: 772 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 831 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 832 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 891 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 892 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLP 951 EDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAK+GW IDVA G+PDWA LP Sbjct: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 Query: 952 EELYSAPADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFP 1011 EEL A + V+TPVFD STLPNRDG+VMV DGK+ LFDGRSGEPFP Sbjct: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 Query: 1012 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1071 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1072 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1131 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1132 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGAAIE+R+G+DEDLERAAANLGINLSRNESAS+EDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASIEDLA 1178 >sp|A0QL49|RPOB_MYCA1 Tax_Id=243243 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium avium] Length = 1175 Score = 2039 bits (5282), Expect = 0.0 Identities = 1039/1178 (88%), Positives = 1072/1178 (91%), Gaps = 12/1178 (1%) Query: 1 MLEGCILAVSSQSKSN---------AITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 51 MLEGCILA QSK++ + N SVPGAPNRVSFAKLREPLEVPGLLDVQ DS Sbjct: 1 MLEGCILADFRQSKTDRPQSSSNGSSSLNGSVPGAPNRVSFAKLREPLEVPGLLDVQIDS 60 Query: 52 FEWLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVD 111 FEWL+G+ RWR+AAI RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VD Sbjct: 61 FEWLIGAPRWREAAIARGDAEPKGGLEEVLDELSPIEDFSGSMSLSFSDPRFDEVKAPVD 120 Query: 112 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 171 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 172 RSPGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 231 RSPGVYFDETIDKSTEKTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 232 LGWTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 291 LGWTNEQI ERFGFSEIMM TLEKD T+GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTNEQITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 292 FKEKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXX 351 FKEKRYDLARVGRYKVNKKLGL+AG+PITSSTLTEEDVVATIEYLVRLHEGQ +MT Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHAGEPITSSTLTEEDVVATIEYLVRLHEGQPTMTVPGG 360 Query: 352 XXXXXXXXXIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 411 IDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINI Sbjct: 361 IEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 412 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 471 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 472 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHV 531 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVVTD+I YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIHYLTADEEDRHV 540 Query: 532 VAQANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHD 591 VAQANSP D+ GRF E RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDDKGRFAEARVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 592 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITV 651 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR K+GVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKSGVIEEVSADYITV 660 Query: 652 MADDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLL 711 MADDGTR +YR+RKF RSNHGTCANQ PIVDAG RVEAGQVIADGPCT+NGEMALGKNLL Sbjct: 661 MADDGTRHTYRMRKFERSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 Query: 712 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 771 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 Query: 772 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 831 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 832 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 891 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 892 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLP 951 EDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNID G P+WA LP Sbjct: 901 QEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNID---GNPEWAVNLP 957 Query: 952 EELYSAPADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFP 1011 EEL A + V+TPVFD TLPNRDGEVMVD DGK+ LFDGRSGEPFP Sbjct: 958 EELRHAQPNQIVSTPVFDGAKEEELAGMLSCTLPNRDGEVMVDGDGKAVLFDGRSGEPFP 1017 Query: 1012 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1071 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1018 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1077 Query: 1072 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1131 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1078 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1137 Query: 1132 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGAAIE+R+G+DEDLERAAANLGINLSRNESASVEDLA Sbjct: 1138 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1175 >sp|P0A680|RPOB_MYCTU Tax_Id=1773 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium tuberculosis] Length = 1178 Score = 2037 bits (5278), Expect = 0.0 Identities = 1032/1178 (87%), Positives = 1079/1178 (91%), Gaps = 9/1178 (0%) Query: 1 MLEGCILAVSSQSKSNAI---------TNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 51 MLEGCILA S QSK+ A +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 52 FEWLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVD 111 FEWL+GS RWR++A +RG+ NPVGGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKA VD Sbjct: 61 FEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVD 120 Query: 112 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 171 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 172 RSPGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 231 RSPGVYFDETIDKST+KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 232 LGWTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 291 LGWT+EQIVERFGFSEIM TLEKD T GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 292 FKEKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXX 351 FKEKRYDLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 352 XXXXXXXXXIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 411 IDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 412 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 471 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 472 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHV 531 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHV 540 Query: 532 VAQANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHD 591 VAQANSP D +GRF E RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 592 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITV 651 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR ++GVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITV 660 Query: 652 MADDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLL 711 M D+GTR++YR+RKFARSNHGTCANQ PIVDAG RVEAGQVIADGPCT +GEMALGKNLL Sbjct: 661 MHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL 720 Query: 712 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 771 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEV 780 Query: 772 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 831 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 832 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 891 HGESGKVIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 892 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLP 951 VEDMPFL DGTPVDIILNTHGVPRRMNIGQILETHLGW A +GW +D A GVPDWA++LP Sbjct: 901 VEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP 960 Query: 952 EELYSAPADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFP 1011 +EL A ++ V+TPVFD TLPNRDG+V+VDADGK+ LFDGRSGEPFP Sbjct: 961 DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFP 1020 Query: 1012 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1071 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1072 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1131 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1132 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGAAIE+R+G+DEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1178 >sp|A1KGE7|RPOB_MYCBP Tax_Id=410289 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium bovis] Length = 1178 Score = 2037 bits (5278), Expect = 0.0 Identities = 1032/1178 (87%), Positives = 1079/1178 (91%), Gaps = 9/1178 (0%) Query: 1 MLEGCILAVSSQSKSNAI---------TNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 51 MLEGCILA S QSK+ A +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 52 FEWLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVD 111 FEWL+GS RWR++A +RG+ NPVGGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKA VD Sbjct: 61 FEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVD 120 Query: 112 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 171 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 172 RSPGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 231 RSPGVYFDETIDKST+KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 232 LGWTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 291 LGWT+EQIVERFGFSEIM TLEKD T GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 292 FKEKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXX 351 FKEKRYDLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 352 XXXXXXXXXIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 411 IDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 412 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 471 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 472 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHV 531 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHV 540 Query: 532 VAQANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHD 591 VAQANSP D +GRF E RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 592 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITV 651 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR ++GVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITV 660 Query: 652 MADDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLL 711 M D+GTR++YR+RKFARSNHGTCANQ PIVDAG RVEAGQVIADGPCT +GEMALGKNLL Sbjct: 661 MHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL 720 Query: 712 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 771 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEV 780 Query: 772 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 831 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 832 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 891 HGESGKVIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 892 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLP 951 VEDMPFL DGTPVDIILNTHGVPRRMNIGQILETHLGW A +GW +D A GVPDWA++LP Sbjct: 901 VEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP 960 Query: 952 EELYSAPADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFP 1011 +EL A ++ V+TPVFD TLPNRDG+V+VDADGK+ LFDGRSGEPFP Sbjct: 961 DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFP 1020 Query: 1012 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1071 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1072 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1131 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1132 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGAAIE+R+G+DEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1178 >sp|P0A681|RPOB_MYCBO Tax_Id=1765 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium bovis] Length = 1178 Score = 2037 bits (5278), Expect = 0.0 Identities = 1032/1178 (87%), Positives = 1079/1178 (91%), Gaps = 9/1178 (0%) Query: 1 MLEGCILAVSSQSKSNAI---------TNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 51 MLEGCILA S QSK+ A +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 52 FEWLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVD 111 FEWL+GS RWR++A +RG+ NPVGGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKA VD Sbjct: 61 FEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVD 120 Query: 112 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 171 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 172 RSPGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 231 RSPGVYFDETIDKST+KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 232 LGWTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 291 LGWT+EQIVERFGFSEIM TLEKD T GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 292 FKEKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXX 351 FKEKRYDLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 352 XXXXXXXXXIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 411 IDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 412 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 471 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 472 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHV 531 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHV 540 Query: 532 VAQANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHD 591 VAQANSP D +GRF E RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 592 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITV 651 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR ++GVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITV 660 Query: 652 MADDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLL 711 M D+GTR++YR+RKFARSNHGTCANQ PIVDAG RVEAGQVIADGPCT +GEMALGKNLL Sbjct: 661 MHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL 720 Query: 712 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 771 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEV 780 Query: 772 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 831 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 832 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 891 HGESGKVIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 892 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLP 951 VEDMPFL DGTPVDIILNTHGVPRRMNIGQILETHLGW A +GW +D A GVPDWA++LP Sbjct: 901 VEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP 960 Query: 952 EELYSAPADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFP 1011 +EL A ++ V+TPVFD TLPNRDG+V+VDADGK+ LFDGRSGEPFP Sbjct: 961 DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFP 1020 Query: 1012 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1071 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1072 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1131 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1132 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGAAIE+R+G+DEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1178 >tr|A4KEZ1|A4KEZ1_MYCTU Tax_Id=395095 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;[Mycobacterium tuberculosis str. Haarlem] Length = 1178 Score = 2037 bits (5278), Expect = 0.0 Identities = 1032/1178 (87%), Positives = 1079/1178 (91%), Gaps = 9/1178 (0%) Query: 1 MLEGCILAVSSQSKSNAI---------TNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 51 MLEGCILA S QSK+ A +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 52 FEWLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVD 111 FEWL+GS RWR++A +RG+ NPVGGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKA VD Sbjct: 61 FEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVD 120 Query: 112 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 171 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 172 RSPGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 231 RSPGVYFDETIDKST+KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 232 LGWTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 291 LGWT+EQIVERFGFSEIM TLEKD T GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 292 FKEKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTXXXX 351 FKEKRYDLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT+MT Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 352 XXXXXXXXXIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 411 IDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 412 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 471 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 472 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHV 531 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHV 540 Query: 532 VAQANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHD 591 VAQANSP D +GRF E RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 592 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXKTGVIEEVSADYITV 651 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR ++GVIEEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITV 660 Query: 652 MADDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLL 711 M D+GTR++YR+RKFARSNHGTCANQ PIVDAG RVEAGQVIADGPCT +GEMALGKNLL Sbjct: 661 MHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL 720 Query: 712 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 771 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEV 780 Query: 772 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 831 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 832 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 891 HGESGKVIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 892 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLP 951 VEDMPFL DGTPVDIILNTHGVPRRMNIGQILETHLGW A +GW +D A GVPDWA++LP Sbjct: 901 VEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP 960 Query: 952 EELYSAPADSTVATPVFDXXXXXXXXXXXXSTLPNRDGEVMVDADGKSTLFDGRSGEPFP 1011 +EL A ++ V+TPVFD TLPNRDG+V+VDADGK+ LFDGRSGEPFP Sbjct: 961 DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFP 1020 Query: 1012 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1071 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1072 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1131 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1132 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 DGAAIE+R+G+DEDLERAAANLGINLSRNESASVEDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1178 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.316 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 9,457,922,325 Number of extensions: 414208838 Number of successful extensions: 957992 Number of sequences better than 10.0: 16812 Number of HSP's gapped: 926666 Number of HSP's successfully gapped: 24402 Length of query: 1169 Length of database: 4,236,830,644 Length adjustment: 150 Effective length of query: 1019 Effective length of database: 2,360,651,044 Effective search space: 2405503413836 Effective search space used: 2405503413836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 87 (38.1 bits)