BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSMEG_1368
         (1317 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           12,507,864 sequences; 4,236,830,644 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

sp|A0QS66|RPOC_MYCS2 Tax_Id=246196 (rpoC)RecName: Full=DNA-direc...  2485   0.0  
sp|Q1BDE9|RPOC_MYCSS Tax_Id=164756 (rpoC)RecName: Full=DNA-direc...  2371   0.0  
sp|A1UBJ4|RPOC_MYCSK Tax_Id=189918 (rpoC)RecName: Full=DNA-direc...  2371   0.0  
sp|A3PV79|RPOC_MYCSJ Tax_Id=164757 (rpoC)RecName: Full=DNA-direc...  2371   0.0  
sp|A1T4J3|RPOC_MYCVP Tax_Id=350058 (rpoC)RecName: Full=DNA-direc...  2323   0.0  
sp|A4T1P3|RPOC_MYCGI Tax_Id=350054 (rpoC)RecName: Full=DNA-direc...  2306   0.0  
sp|A0QL48|RPOC_MYCA1 Tax_Id=243243 (rpoC)RecName: Full=DNA-direc...  2301   0.0  
sp|Q73SE3|RPOC_MYCPA Tax_Id=1770 (rpoC)RecName: Full=DNA-directe...  2300   0.0  
tr|D5PC77|D5PC77_9MYCO Tax_Id=525368 (rpoC)SubName: Full=DNA-dir...  2295   0.0  
sp|P0A674|RPOC_MYCTU Tax_Id=1773 (rpoC)RecName: Full=DNA-directe...  2290   0.0  
sp|A5U053|RPOC_MYCTA Tax_Id=419947 (rpoC)RecName: Full=DNA-direc...  2290   0.0  
sp|P0A675|RPOC_MYCBO Tax_Id=1765 (rpoC)RecName: Full=DNA-directe...  2290   0.0  
tr|C6DUI1|C6DUI1_MYCTK Tax_Id=478434 (rpoC)RecName: Full=DNA-dir...  2290   0.0  
tr|A5WK36|A5WK36_MYCTF Tax_Id=336982 (rpoC)RecName: Full=DNA-dir...  2290   0.0  
tr|D6FZW8|D6FZW8_MYCTU Tax_Id=478435 SubName: Full=DNA-directed ...  2290   0.0  
sp|A1KGE8|RPOC_MYCBP Tax_Id=410289 (rpoC)RecName: Full=DNA-direc...  2287   0.0  
tr|D6F1T3|D6F1T3_MYCTU Tax_Id=611302 SubName: Full=DNA-directed ...  2286   0.0  
sp|C1AL01|RPOC_MYCBT Tax_Id=561275 (rpoC)RecName: Full=DNA-direc...  2286   0.0  
sp|B2HSJ4|RPOC_MYCMM Tax_Id=216594 (rpoC)RecName: Full=DNA-direc...  2277   0.0  
sp|B1MH61|RPOC_MYCA9 Tax_Id=561007 (rpoC)RecName: Full=DNA-direc...  2275   0.0  
sp|A0PM25|RPOC_MYCUA Tax_Id=362242 (rpoC)RecName: Full=DNA-direc...  2272   0.0  
tr|D6FEH7|D6FEH7_MYCTU Tax_Id=611303 SubName: Full=DNA-directed ...  2272   0.0  
sp|Q5YPE1|RPOC_NOCFA Tax_Id=37329 (rpoC)RecName: Full=DNA-direct...  2270   0.0  
sp|P30761|RPOC_MYCLE Tax_Id=1769 (rpoC)RecName: Full=DNA-directe...  2260   0.0  
sp|B8ZSC6|RPOC_MYCLB Tax_Id=561304 (rpoC)RecName: Full=DNA-direc...  2260   0.0  
tr|D5Y0Z7|D5Y0Z7_MYCTU Tax_Id=520141 SubName: Full=DNA-directed ...  2255   0.0  
tr|D5PRN6|D5PRN6_COREQ Tax_Id=525370 (rpoC)SubName: Full=DNA-dir...  2231   0.0  
sp|Q0SFB4|RPOC_RHOSR Tax_Id=101510 (rpoC)RecName: Full=DNA-direc...  2230   0.0  
sp|C1AYV8|RPOC_RHOOB Tax_Id=632772 (rpoC)RecName: Full=DNA-direc...  2226   0.0  
sp|C0ZVQ7|RPOC_RHOE4 Tax_Id=234621 (rpoC)RecName: Full=DNA-direc...  2210   0.0  
tr|C3JJR1|C3JJR1_RHOER Tax_Id=596309 (rpoC)RecName: Full=DNA-dir...  2208   0.0  
tr|D5UTN7|D5UTN7_TSUPA Tax_Id=521096 SubName: Full=DNA-directed ...  2177   0.0  
tr|D0L4Z5|D0L4Z5_GORB4 Tax_Id=526226 (rpoC)RecName: Full=DNA-dir...  2173   0.0  
tr|A4KEZ2|A4KEZ2_MYCTU Tax_Id=395095 (rpoC)RecName: Full=DNA-dir...  2118   0.0  
tr|D6FMI2|D6FMI2_MYCTU Tax_Id=611304 SubName: Full=DNA-directed ...  2101   0.0  
tr|D5Z0Q0|D5Z0Q0_MYCTU Tax_Id=537209 SubName: Full=DNA-directed ...  2089   0.0  
tr|D5XQU7|D5XQU7_MYCTU Tax_Id=515617 SubName: Full=DNA-directed ...  2085   0.0  
tr|D5YBE0|D5YBE0_MYCTU Tax_Id=520140 SubName: Full=DNA-directed ...  2076   0.0  
tr|D5YNW2|D5YNW2_MYCTU Tax_Id=515616 SubName: Full=DNA-directed ...  2072   0.0  
sp|A4FPP2|RPOC_SACEN Tax_Id=405948 (rpoC)RecName: Full=DNA-direc...  2036   0.0  
tr|C7MTI8|C7MTI8_SACVD Tax_Id=471857 (rpoC)RecName: Full=DNA-dir...  2024   0.0  
tr|C6WN59|C6WN59_ACTMD Tax_Id=446462 (rpoC)RecName: Full=DNA-dir...  1978   0.0  
tr|C8XBL0|C8XBL0_NAKMY Tax_Id=479431 (rpoC)RecName: Full=DNA-dir...  1921   0.0  
sp|Q4JT33|RPOC_CORJK Tax_Id=306537 (rpoC)RecName: Full=DNA-direc...  1867   0.0  
tr|C8RUP2|C8RUP2_CORJE Tax_Id=525262 (rpoC)RecName: Full=DNA-dir...  1860   0.0  

>sp|A0QS66|RPOC_MYCS2 Tax_Id=246196 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            smegmatis]
          Length = 1317

 Score = 2485 bits (6440), Expect = 0.0
 Identities = 1266/1317 (96%), Positives = 1266/1317 (96%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVDDEMRHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLEAEMAVEKKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     KSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL
Sbjct: 181  LAELEAEGAKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQ             
Sbjct: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
            AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA
Sbjct: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF
Sbjct: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA
Sbjct: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
Sbjct: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL
Sbjct: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
            AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK
Sbjct: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ    
Sbjct: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVT 1020

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK
Sbjct: 1021 GGADIVGGLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ
Sbjct: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE
Sbjct: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP
Sbjct: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317


>sp|Q1BDE9|RPOC_MYCSS Tax_Id=164756 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            sp.]
          Length = 1315

 Score = 2371 bits (6145), Expect = 0.0
 Identities = 1205/1317 (91%), Positives = 1234/1317 (93%), Gaps = 2/1317 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATADDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVIT V+DEMRHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITDVNDEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     KSDVRRKVRD GEREMRQLRDRAQRELDRLDEIW TFTKLAPKQLIVDEVL
Sbjct: 181  LAELEAEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIKKLIENFDI+AEAE+LRE IRSGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIKKLIENFDIEAEAENLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLY+LTT++EG  GEY+
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTTMIEGDKGEYR 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
             A  D PE+GVYSSPAEAIMAMDRGALSVRAKIKVRLT+LRPP  LEA+LFENGWKPG A
Sbjct: 601  PAATDQPEEGVYSSPAEAIMAMDRGALSVRAKIKVRLTQLRPPAALEAELFENGWKPGLA 660

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            WTAETTLGRVMFNELLP SYPF+NEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF
Sbjct: 661  WTAETTLGRVMFNELLPISYPFINEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            +WATRSGVTVSMADVLVPPQKQEIL+R+EAEAD IERKYQRGALNH ERN+SLVKIWQDA
Sbjct: 721  HWATRSGVTVSMADVLVPPQKQEILDRYEAEADGIERKYQRGALNHKERNDSLVKIWQDA 780

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            TEEVGKALEE YPADNPIITIVKSGATGN TQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
Sbjct: 781  TEEVGKALEEHYPADNPIITIVKSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL
Sbjct: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
            AER PDG+LIRD HVETSAFARTLATDAVDA+GNV+IERGHDLGDPAID LLAAGI  VK
Sbjct: 901  AERQPDGSLIRDPHVETSAFARTLATDAVDADGNVVIERGHDLGDPAIDKLLAAGIDHVK 960

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTC SATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ    
Sbjct: 961  VRSVLTCASATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--GG 1018

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRVQELFEARVPRNKAPIADV+GRV+LEE ++F+KITIVPDDGGEEVVYDK
Sbjct: 1019 VGEDITGGLPRVQELFEARVPRNKAPIADVSGRVQLEEGERFYKITIVPDDGGEEVVYDK 1078

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            LSKRQRLRVI HEDG+EGVLSDGDHVEVGDQLMEG+ADPHEVLRVQGPREVQIHLV EVQ
Sbjct: 1079 LSKRQRLRVIKHEDGSEGVLSDGDHVEVGDQLMEGSADPHEVLRVQGPREVQIHLVHEVQ 1138

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLTERAEFE+ENRRVVAEGGE
Sbjct: 1139 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAEGGE 1198

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP
Sbjct: 1199 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIP 1258

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            AGTGI+RYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1259 AGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1315


>sp|A1UBJ4|RPOC_MYCSK Tax_Id=189918 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            sp.]
          Length = 1315

 Score = 2371 bits (6145), Expect = 0.0
 Identities = 1205/1317 (91%), Positives = 1234/1317 (93%), Gaps = 2/1317 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATADDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVIT V+DEMRHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITDVNDEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     KSDVRRKVRD GEREMRQLRDRAQRELDRLDEIW TFTKLAPKQLIVDEVL
Sbjct: 181  LAELEAEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIKKLIENFDI+AEAE+LRE IRSGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIKKLIENFDIEAEAENLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLY+LTT++EG  GEY+
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTTMIEGDKGEYR 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
             A  D PE+GVYSSPAEAIMAMDRGALSVRAKIKVRLT+LRPP  LEA+LFENGWKPG A
Sbjct: 601  PAATDQPEEGVYSSPAEAIMAMDRGALSVRAKIKVRLTQLRPPAALEAELFENGWKPGLA 660

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            WTAETTLGRVMFNELLP SYPF+NEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF
Sbjct: 661  WTAETTLGRVMFNELLPISYPFINEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            +WATRSGVTVSMADVLVPPQKQEIL+R+EAEAD IERKYQRGALNH ERN+SLVKIWQDA
Sbjct: 721  HWATRSGVTVSMADVLVPPQKQEILDRYEAEADGIERKYQRGALNHKERNDSLVKIWQDA 780

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            TEEVGKALEE YPADNPIITIVKSGATGN TQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
Sbjct: 781  TEEVGKALEEHYPADNPIITIVKSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL
Sbjct: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
            AER PDG+LIRD HVETSAFARTLATDAVDA+GNV+IERGHDLGDPAID LLAAGI  VK
Sbjct: 901  AERQPDGSLIRDPHVETSAFARTLATDAVDADGNVVIERGHDLGDPAIDKLLAAGIDHVK 960

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTC SATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ    
Sbjct: 961  VRSVLTCASATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--GG 1018

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRVQELFEARVPRNKAPIADV+GRV+LEE ++F+KITIVPDDGGEEVVYDK
Sbjct: 1019 VGEDITGGLPRVQELFEARVPRNKAPIADVSGRVQLEEGERFYKITIVPDDGGEEVVYDK 1078

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            LSKRQRLRVI HEDG+EGVLSDGDHVEVGDQLMEG+ADPHEVLRVQGPREVQIHLV EVQ
Sbjct: 1079 LSKRQRLRVIKHEDGSEGVLSDGDHVEVGDQLMEGSADPHEVLRVQGPREVQIHLVHEVQ 1138

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLTERAEFE+ENRRVVAEGGE
Sbjct: 1139 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAEGGE 1198

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP
Sbjct: 1199 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIP 1258

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            AGTGI+RYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1259 AGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1315


>sp|A3PV79|RPOC_MYCSJ Tax_Id=164757 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            sp.]
          Length = 1315

 Score = 2371 bits (6145), Expect = 0.0
 Identities = 1205/1317 (91%), Positives = 1234/1317 (93%), Gaps = 2/1317 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATADDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVIT V+DEMRHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITDVNDEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     KSDVRRKVRD GEREMRQLRDRAQRELDRLDEIW TFTKLAPKQLIVDEVL
Sbjct: 181  LAELEAEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIKKLIENFDI+AEAE+LRE IRSGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIKKLIENFDIEAEAENLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLY+LTT++EG  GEY+
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTTMIEGDKGEYR 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
             A  D PE+GVYSSPAEAIMAMDRGALSVRAKIKVRLT+LRPP  LEA+LFENGWKPG A
Sbjct: 601  PAATDQPEEGVYSSPAEAIMAMDRGALSVRAKIKVRLTQLRPPAALEAELFENGWKPGLA 660

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            WTAETTLGRVMFNELLP SYPF+NEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF
Sbjct: 661  WTAETTLGRVMFNELLPISYPFINEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            +WATRSGVTVSMADVLVPPQKQEIL+R+EAEAD IERKYQRGALNH ERN+SLVKIWQDA
Sbjct: 721  HWATRSGVTVSMADVLVPPQKQEILDRYEAEADGIERKYQRGALNHKERNDSLVKIWQDA 780

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            TEEVGKALEE YPADNPIITIVKSGATGN TQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
Sbjct: 781  TEEVGKALEEHYPADNPIITIVKSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL
Sbjct: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
            AER PDG+LIRD HVETSAFARTLATDAVDA+GNV+IERGHDLGDPAID LLAAGI  VK
Sbjct: 901  AERQPDGSLIRDPHVETSAFARTLATDAVDADGNVVIERGHDLGDPAIDKLLAAGIDHVK 960

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTC SATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ    
Sbjct: 961  VRSVLTCASATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--GG 1018

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRVQELFEARVPRNKAPIADV+GRV+LEE ++F+KITIVPDDGGEEVVYDK
Sbjct: 1019 VGEDITGGLPRVQELFEARVPRNKAPIADVSGRVQLEEGERFYKITIVPDDGGEEVVYDK 1078

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            LSKRQRLRVI HEDG+EGVLSDGDHVEVGDQLMEG+ADPHEVLRVQGPREVQIHLV EVQ
Sbjct: 1079 LSKRQRLRVIKHEDGSEGVLSDGDHVEVGDQLMEGSADPHEVLRVQGPREVQIHLVHEVQ 1138

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLTERAEFE+ENRRVVAEGGE
Sbjct: 1139 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAEGGE 1198

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP
Sbjct: 1199 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIP 1258

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            AGTGI+RYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1259 AGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1315


>sp|A1T4J3|RPOC_MYCVP Tax_Id=350058 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            vanbaalenii]
          Length = 1317

 Score = 2323 bits (6019), Expect = 0.0
 Identities = 1169/1317 (88%), Positives = 1221/1317 (92%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATADDIRNWS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVIT+VDDEMRHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMAVERKAIEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     KSDV+RKVRD GEREMRQLRDRAQRELDRL+EIW TFTKLAPKQLIVDE+L
Sbjct: 181  MKELEDEGAKSDVKRKVRDGGEREMRQLRDRAQRELDRLEEIWTTFTKLAPKQLIVDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YRELQDRYGEYF GAMGAESIKKLIENFDIDAEAESLR+ I++GKGQ             
Sbjct: 241  YRELQDRYGEYFEGAMGAESIKKLIENFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLY+LTT +EG TGE+ 
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIEGDTGEFT 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
             A KD PE GVYSSPAEAIMA+DRGALSVRAKI+VRLT+LRPP ++EA+ F +GW  GDA
Sbjct: 601  PAAKDQPESGVYSSPAEAIMALDRGALSVRAKIRVRLTQLRPPAEIEAERFPDGWNMGDA 660

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            WTAETTLGRV+FNELLP+ YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAGF
Sbjct: 661  WTAETTLGRVLFNELLPRGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAGF 720

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            YWATRSGVTVSMADVLVPP+KQEILER+EAEAD+IE++YQRG LN  ERNE+LVKIWQDA
Sbjct: 721  YWATRSGVTVSMADVLVPPEKQEILERYEAEADSIEKQYQRGKLNKDERNEALVKIWQDA 780

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            TEEVG+AL   YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
Sbjct: 781  TEEVGQALRSHYPKDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DCETERGI VTL
Sbjct: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGITVTL 900

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
            AE+  DGTL+RD H+ETSA+ARTLATDAVDA GNVI+ERGHDLGDPAIDALLAAGIT VK
Sbjct: 901  AEKQADGTLVRDQHIETSAYARTLATDAVDAKGNVIVERGHDLGDPAIDALLAAGITEVK 960

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTC + TGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ    
Sbjct: 961  VRSVLTCGTGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVT 1020

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRVQELFEAR+PRN+APIADV+GR+RLEESDKF+KITIVPDDGGEEVVYDK
Sbjct: 1021 GGADIVGGLPRVQELFEARIPRNRAPIADVSGRIRLEESDKFYKITIVPDDGGEEVVYDK 1080

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            LS+RQRL+V  H+DG+E +L+DGDHVEVG QL+EG+ADPHEVLRVQGPREVQIHLVKEVQ
Sbjct: 1081 LSRRQRLKVFKHDDGSERLLTDGDHVEVGQQLLEGSADPHEVLRVQGPREVQIHLVKEVQ 1140

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLTER EFE ENRRVVAEGGE
Sbjct: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAEGGE 1200

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP
Sbjct: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIP 1260

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            AGTGI+RYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1261 AGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317


>sp|A4T1P3|RPOC_MYCGI Tax_Id=350054 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            gilvum]
          Length = 1316

 Score = 2306 bits (5976), Expect = 0.0
 Identities = 1164/1317 (88%), Positives = 1216/1317 (92%), Gaps = 1/1317 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATADDIRNWS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVIT+VDDEMRHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMVVEKKAIEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     KSDVRRKVRD GEREMRQLRDRAQRELDRLDEIW TFTKLAPKQLIVDE+L
Sbjct: 181  MKELEEEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YRELQDRYGEYF GAMGAESIKKLIE FDIDAEA+SLR+ I++GKGQ             
Sbjct: 241  YRELQDRYGEYFEGAMGAESIKKLIETFDIDAEADSLRDTIKNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVI+EHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLY+LTT +EG  GE+ 
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIEGDKGEFT 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
             A KD PE GVYSSPAEAIMAMDRGALSVRAKI+VRLT+LRPP ++EA+ F +GW  GDA
Sbjct: 601  PAAKDQPESGVYSSPAEAIMAMDRGALSVRAKIRVRLTQLRPPAEIEAERFPDGWNMGDA 660

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            WTAETTLGRV+FNELLP+ YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAGF
Sbjct: 661  WTAETTLGRVLFNELLPRGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAGF 720

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            YWATRSGVTVSMADVLVPP+KQEILER+EA AD+IE++YQRG L+  ERNE+LVKIWQDA
Sbjct: 721  YWATRSGVTVSMADVLVPPEKQEILERYEAAADSIEKQYQRGKLDKGERNEALVKIWQDA 780

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            TEEVG+AL   YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
Sbjct: 781  TEEVGQALRSHYPKDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DCETERGI VTL
Sbjct: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGITVTL 900

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
            AE   D  L+RD H+ETSA+ARTLATDAVDANGNV++ERGHDLGDPAIDALLAAGIT VK
Sbjct: 901  AELQGD-QLLRDQHIETSAYARTLATDAVDANGNVVVERGHDLGDPAIDALLAAGITEVK 959

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTC + TGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ    
Sbjct: 960  VRSVLTCATGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVT 1019

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRVQELFEAR+PRN+APIADV+GR+RLEESDKF+KITIVPDDGGEEVVYDK
Sbjct: 1020 GGADIVGGLPRVQELFEARIPRNRAPIADVSGRIRLEESDKFYKITIVPDDGGEEVVYDK 1079

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            LS+RQRL+V  H+DG+E +L+DGDHVEVG QL+EG+ADPHEVLRVQGPREVQIHLVKEVQ
Sbjct: 1080 LSRRQRLKVFKHDDGSERLLTDGDHVEVGQQLLEGSADPHEVLRVQGPREVQIHLVKEVQ 1139

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLTER EFE ENRRVVAEGGE
Sbjct: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAEGGE 1199

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP
Sbjct: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIP 1259

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            AGTGI+RYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1260 AGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316


>sp|A0QL48|RPOC_MYCA1 Tax_Id=243243 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            avium]
          Length = 1316

 Score = 2301 bits (5962), Expect = 0.0
 Identities = 1164/1318 (88%), Positives = 1216/1318 (92%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRDSGEREMRQ+RDRAQRELDRL++IWNTFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDSGEREMRQIRDRAQRELDRLEDIWNTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAE LR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAEQLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT VEG  GEY+
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGEYR 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A KD PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  NGW+PGD
Sbjct: 601  PAAKDTPEVGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRV+FNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQASIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+++E  A+ +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YPADNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ RG DLGDP IDALLAAGIT+V
Sbjct: 901  LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVARGEDLGDPEIDALLAAGITSV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTCT+ TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEAR+PR KAPIADV GRVRLE+ ++F+KITIVPDDG EEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            KLSKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316


>sp|Q73SE3|RPOC_MYCPA Tax_Id=1770 (rpoC)RecName: Full=DNA-directed RNA
            polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            paratuberculosis]
          Length = 1316

 Score = 2300 bits (5961), Expect = 0.0
 Identities = 1164/1318 (88%), Positives = 1215/1318 (92%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRDSGEREMRQ+RDRAQRELDRL++IWNTFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDSGEREMRQIRDRAQRELDRLEDIWNTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAE LR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAEQLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT VEG  GEY 
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGEYS 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A KD PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  NGW+PGD
Sbjct: 601  PAAKDRPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRV+FNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQASIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+++E  A+ +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YPADNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ RG DLGDP IDALLAAGIT+V
Sbjct: 901  LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVARGEDLGDPEIDALLAAGITSV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTCT+ TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEAR+PR KAPIADV GRVRLE+ ++F+KITIVPDDG EEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            KLSKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316


>tr|D5PC77|D5PC77_9MYCO Tax_Id=525368 (rpoC)SubName: Full=DNA-directed
            RNA polymerase subunit beta prime;
            EC=2.7.7.6;[Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 1316

 Score = 2295 bits (5948), Expect = 0.0
 Identities = 1161/1318 (88%), Positives = 1214/1318 (92%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVDDEMRHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQLRDRAQRELDRL++IWNTFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQLRDRAQRELDRLEDIWNTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEA+SLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEADSLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V+ A GE+Q
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVDAALGEFQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A KD PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  NGW+PGD
Sbjct: 601  PAAKDQPEVGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW A+TTLGRV+FNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMADTTLGRVLFNELLPVGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  A+ +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP+DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPSDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGILVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNV++ RG DLGDP IDALLAAGIT V
Sbjct: 901  LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGNVVVARGEDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTCT+ TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRV+LE+ ++F+KITIVPDDG EEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVQLEDGERFYKITIVPDDGSEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            KLSKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316


>sp|P0A674|RPOC_MYCTU Tax_Id=1773 (rpoC)RecName: Full=DNA-directed RNA
            polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            tuberculosis]
          Length = 1316

 Score = 2290 bits (5934), Expect = 0.0
 Identities = 1159/1318 (87%), Positives = 1212/1318 (91%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>sp|A5U053|RPOC_MYCTA Tax_Id=419947 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            tuberculosis]
          Length = 1316

 Score = 2290 bits (5934), Expect = 0.0
 Identities = 1159/1318 (87%), Positives = 1212/1318 (91%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>sp|P0A675|RPOC_MYCBO Tax_Id=1765 (rpoC)RecName: Full=DNA-directed RNA
            polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            bovis]
          Length = 1316

 Score = 2290 bits (5934), Expect = 0.0
 Identities = 1159/1318 (87%), Positives = 1212/1318 (91%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>tr|C6DUI1|C6DUI1_MYCTK Tax_Id=478434 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6;[Mycobacterium tuberculosis]
          Length = 1316

 Score = 2290 bits (5934), Expect = 0.0
 Identities = 1159/1318 (87%), Positives = 1212/1318 (91%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>tr|A5WK36|A5WK36_MYCTF Tax_Id=336982 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6;[Mycobacterium tuberculosis]
          Length = 1316

 Score = 2290 bits (5934), Expect = 0.0
 Identities = 1159/1318 (87%), Positives = 1212/1318 (91%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>tr|D6FZW8|D6FZW8_MYCTU Tax_Id=478435 SubName: Full=DNA-directed RNA
            polymerase subunit beta rpoC;[Mycobacterium tuberculosis
            KZN 605]
          Length = 1316

 Score = 2290 bits (5934), Expect = 0.0
 Identities = 1159/1318 (87%), Positives = 1212/1318 (91%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>sp|A1KGE8|RPOC_MYCBP Tax_Id=410289 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            bovis]
          Length = 1316

 Score = 2287 bits (5927), Expect = 0.0
 Identities = 1158/1318 (87%), Positives = 1211/1318 (91%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRV FKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVPFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>tr|D6F1T3|D6F1T3_MYCTU Tax_Id=611302 SubName: Full=DNA-directed RNA
            polymerase, beta' subunit;[Mycobacterium tuberculosis
            T46]
          Length = 1316

 Score = 2286 bits (5925), Expect = 0.0
 Identities = 1157/1318 (87%), Positives = 1210/1318 (91%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LE RAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEVRAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSAASFQE TRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQEATRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>sp|C1AL01|RPOC_MYCBT Tax_Id=561275 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            bovis]
          Length = 1316

 Score = 2286 bits (5923), Expect = 0.0
 Identities = 1157/1318 (87%), Positives = 1210/1318 (91%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKR  FKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRAPFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>sp|B2HSJ4|RPOC_MYCMM Tax_Id=216594 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            marinum]
          Length = 1316

 Score = 2277 bits (5901), Expect = 0.0
 Identities = 1155/1318 (87%), Positives = 1208/1318 (91%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRDSGEREMRQLRDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YRELQDRYGEYFTGAMGAESI+KLIE FDIDAEAE LR+VIR+GKGQ             
Sbjct: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT VEG  G YQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A +D+PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++E  LF  NGW+PGD
Sbjct: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AWTAETTLGRV+FNELLP  Y FVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKD+G
Sbjct: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  A+ +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YPADNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER  DGTLIRD ++ETSA+ARTL  DAVD  GNV++ RG DLGDP I+A LAAGIT V
Sbjct: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTCT+ TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            KLSKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFEAENRRVVAE G
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNI VQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316


>sp|B1MH61|RPOC_MYCA9 Tax_Id=561007 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            abscessus]
          Length = 1319

 Score = 2275 bits (5896), Expect = 0.0
 Identities = 1150/1321 (87%), Positives = 1209/1321 (91%), Gaps = 6/1321 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLA+ADDIRNWS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLASADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVIT+VDDE+RHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     KSDVRRKVRD GEREMRQLRDR+QRELDRLDEIW TFTKLAPKQLIVDEVL
Sbjct: 181  LAELEAEGAKSDVRRKVRDGGEREMRQLRDRSQRELDRLDEIWTTFTKLAPKQLIVDEVL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAE+++KLI+NFD+DAEAE+LRE IRSGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAEAVQKLIQNFDLDAEAENLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ S NSP GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQNSTNSPGGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
             QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLY+LTT + G  G + 
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIPGDIGAHA 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
             A KD PE GVYSSPAEAIMAMDRGALSVRA I+VRLT+ RPP ++EA+LFENGW+PGDA
Sbjct: 601  PAGKDQPEVGVYSSPAEAIMAMDRGALSVRAPIRVRLTQQRPPAEVEAELFENGWQPGDA 660

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            W AETTLGRV+FNELLP  YPFVN+QMHKKVQ+ IINDLAERFPMIVVAQTVDKLKDAGF
Sbjct: 661  WVAETTLGRVLFNELLPHGYPFVNKQMHKKVQSAIINDLAERFPMIVVAQTVDKLKDAGF 720

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            +WATRSGVTVSMADVLVPPQK EIL+R+E EA+ IE++YQRGALN  ER ++LVKIWQ+A
Sbjct: 721  HWATRSGVTVSMADVLVPPQKAEILDRYEKEAERIEKQYQRGALNQQERRDALVKIWQEA 780

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            T+EVGKALEE YPADNPI  + KSGATGN+TQ R LAGMKGLVTNPKGE+IPRPIKSSFR
Sbjct: 781  TDEVGKALEEHYPADNPITLLPKSGATGNMTQVRNLAGMKGLVTNPKGEYIPRPIKSSFR 840

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC TERGINV +
Sbjct: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGINVVI 900

Query: 901  AER--GPDG--TLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGI 956
            AE+  GPDG  TLIRDAH+ETSA+ARTLA DAVDA+GNV++ERGHDLGDPAI+ LLAAG+
Sbjct: 901  AEKQTGPDGKATLIRDAHIETSAYARTLAADAVDADGNVLVERGHDLGDPAIEKLLAAGV 960

Query: 957  TTVKVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ 1016
            TTVKVRSVLTCT+ TGVCAMCYGRSMATGKLVDIGEA GIVAAQSIGEPGTQLTMRTFHQ
Sbjct: 961  TTVKVRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAAGIVAAQSIGEPGTQLTMRTFHQ 1020

Query: 1017 XXXXXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEV 1076
                        LPRV ELFEARVP+ KAPIADV GRVRLEE ++F+KITIVPDDGGEEV
Sbjct: 1021 --GGVGDDITGGLPRVTELFEARVPKGKAPIADVTGRVRLEEGERFYKITIVPDDGGEEV 1078

Query: 1077 VYDKLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLV 1136
            VYDKLSKRQRLRV  HEDG+E  L+DGDHVEVG QLMEGAADPHEVLRV GPR+VQ+HLV
Sbjct: 1079 VYDKLSKRQRLRVFKHEDGSERPLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQVHLV 1138

Query: 1137 KEVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVA 1196
             EVQEVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLTERAEFE+ENRRVVA
Sbjct: 1139 NEVQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVA 1198

Query: 1197 EGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIG 1256
            EGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIG
Sbjct: 1199 EGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIG 1258

Query: 1257 KLIPAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDY 1316
            KLIPAGTGI+RYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG  TGAAVPLDDYGYSDY
Sbjct: 1259 KLIPAGTGINRYRNISVQPTEEARAAAYTIPSYEDQYYSPDFGSNTGAAVPLDDYGYSDY 1318

Query: 1317 R 1317
            R
Sbjct: 1319 R 1319


>sp|A0PM25|RPOC_MYCUA Tax_Id=362242 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            ulcerans]
          Length = 1316

 Score = 2272 bits (5888), Expect = 0.0
 Identities = 1151/1318 (87%), Positives = 1206/1318 (91%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRDSGEREMRQLRDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YRELQDRYGEYFTGAMGAESI+KLIE FDIDAEAE LR+VIR+GKGQ             
Sbjct: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRP+VQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPLVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT VEG  G YQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A +D+PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++E +LF  NGW+PGD
Sbjct: 601  PAVQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDELFGHNGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AWTAETTLGRV+FNELLP  Y FVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKD+G
Sbjct: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  A+ +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YPADNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER  DGTLIRD ++ETSA+ARTL  DAVD  GNV++ RG DLGDP I+A LAAGIT V
Sbjct: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTCT+ TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+ I IVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYTIAIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            KLSKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFEAENRRVVAE G
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNI VQPTEEAR AAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIAVQPTEEARVAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316


>tr|D6FEH7|D6FEH7_MYCTU Tax_Id=611303 SubName: Full=DNA-directed RNA
            polymerase subunit beta rpoC;[Mycobacterium tuberculosis
            CPHL_A]
          Length = 1316

 Score = 2272 bits (5888), Expect = 0.0
 Identities = 1151/1318 (87%), Positives = 1204/1318 (91%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWL        TRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLFGGVVPGDTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>sp|Q5YPE1|RPOC_NOCFA Tax_Id=37329 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Nocardia
            farcinica]
          Length = 1317

 Score = 2270 bits (5882), Expect = 0.0
 Identities = 1147/1318 (87%), Positives = 1206/1318 (91%), Gaps = 2/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATADDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+E+RHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     KSDVRRKV+D GEREMRQ+RDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL
Sbjct: 181  LAELEAEGAKSDVRRKVKDGGEREMRQIRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KL+ENFDIDAEAESLRE IR+GKGQ             
Sbjct: 241  YRELTDRYGEYFTGAMGAESIQKLMENFDIDAEAESLRETIRTGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ +GNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQANGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLT L EGA GEY+
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTRLEEGAKGEYR 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
             AT DAPE GVYSSPAEA MA+DRG L+VR+KIKVRLT+ RPP D+EA+LF  GW+ GDA
Sbjct: 601  PATADAPEFGVYSSPAEAQMAVDRGELTVRSKIKVRLTDQRPPKDVEAELFPEGWQRGDA 660

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            WT ETTLGRV+FNELLP  YPF+NE M KK QA IINDLAER+PMIVVAQTVDKLKDAGF
Sbjct: 661  WTTETTLGRVLFNELLPADYPFINEPMPKKRQATIINDLAERYPMIVVAQTVDKLKDAGF 720

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            YWATRSGVTVSM+DVLVPP+K EI+ER+EA++D IE+KYQRGAL+H ERN +LVKIWQ+A
Sbjct: 721  YWATRSGVTVSMSDVLVPPEKAEIMERYEAQSDQIEKKYQRGALDHQERNNALVKIWQEA 780

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            TEEVGKAL   YPADNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
Sbjct: 781  TEEVGKALRAHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC TERGI V +
Sbjct: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGIVVPI 900

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
            AE+ PDG++IRD HVETS +ARTLA DAVDANGNVI+ +G DLGDPA++ALL AGIT VK
Sbjct: 901  AEKQPDGSIIRDPHVETSTYARTLAADAVDANGNVIVAKGADLGDPALEALLEAGITEVK 960

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTCT+ TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ    
Sbjct: 961  VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ-GGV 1019

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRVQELFEARVP+ KAPIA+V+GRVRLE+ D+F+KITI+PDDGGEEVVYDK
Sbjct: 1020 AGDDITGGLPRVQELFEARVPKGKAPIAEVSGRVRLEDDDRFYKITIIPDDGGEEVVYDK 1079

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            LSKRQRLRV  H+DGTE +LSDGDHVEVG QL+EGAADPHEVLRV GPR+VQ+HLV EVQ
Sbjct: 1080 LSKRQRLRVFKHDDGTERLLSDGDHVEVGQQLLEGAADPHEVLRVMGPRQVQVHLVHEVQ 1139

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEA NRRVVAEGGE
Sbjct: 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAANRRVVAEGGE 1199

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PA+GRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP
Sbjct: 1200 PASGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYSDYR 1317
            AGTGI+RYRNIQVQPTEEARAAAY +PSY+D YYSPD FG +TGAAVPLDDYG+SDYR
Sbjct: 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDSFGSSTGAAVPLDDYGFSDYR 1317


>sp|P30761|RPOC_MYCLE Tax_Id=1769 (rpoC)RecName: Full=DNA-directed RNA
            polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            leprae]
          Length = 1316

 Score = 2260 bits (5857), Expect = 0.0
 Identities = 1141/1318 (86%), Positives = 1206/1318 (91%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVIT+VD+EMRHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRK RD GEREMRQLR+RAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAALEAEGAKADARRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KL+++FDI+AEAESLREVIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V+G TG Y+
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A +D PE GVYSSPAEAIMA DRG LSVRAKIKV+LT++RPP D+EA+ F  NGW+PGD
Sbjct: 601  PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
             W A+TTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL + YP DNPIITIV SGATGN TQTR LAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LA R PDG+LIR+ ++ETSA+ARTL  +AVD  GNVI+ RG DLGDP IDALLAAGIT V
Sbjct: 901  LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTCT+ TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            KLSKRQRLRV  H DG+E VLSDGD+VEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KLSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFE+ENRRVVAE G
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNIQVQPTEEARA+AYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316


>sp|B8ZSC6|RPOC_MYCLB Tax_Id=561304 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            leprae]
          Length = 1316

 Score = 2260 bits (5857), Expect = 0.0
 Identities = 1141/1318 (86%), Positives = 1206/1318 (91%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVIT+VD+EMRHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRK RD GEREMRQLR+RAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAALEAEGAKADARRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KL+++FDI+AEAESLREVIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V+G TG Y+
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A +D PE GVYSSPAEAIMA DRG LSVRAKIKV+LT++RPP D+EA+ F  NGW+PGD
Sbjct: 601  PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
             W A+TTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL + YP DNPIITIV SGATGN TQTR LAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LA R PDG+LIR+ ++ETSA+ARTL  +AVD  GNVI+ RG DLGDP IDALLAAGIT V
Sbjct: 901  LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTCT+ TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            KLSKRQRLRV  H DG+E VLSDGD+VEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KLSKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFE+ENRRVVAE G
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNIQVQPTEEARA+AYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316


>tr|D5Y0Z7|D5Y0Z7_MYCTU Tax_Id=520141 SubName: Full=DNA-directed RNA
            polymerase subunit beta;[Mycobacterium tuberculosis T85]
          Length = 1316

 Score = 2255 bits (5844), Expect = 0.0
 Identities = 1144/1318 (86%), Positives = 1198/1318 (90%), Gaps = 3/1318 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRPVLMGITKASLATDSWLSA S Q +           RSDKLNGLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAISLQMSVSYADRCDDQLRSDKLNGLKENVIIGKLI 1258

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317
            PAGTGI+RYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>tr|D5PRN6|D5PRN6_COREQ Tax_Id=525370 (rpoC)SubName: Full=DNA-directed
            RNA polymerase subunit beta prime;
            EC=2.7.7.6;[Rhodococcus equi ATCC 33707]
          Length = 1319

 Score = 2231 bits (5781), Expect = 0.0
 Identities = 1126/1319 (85%), Positives = 1192/1319 (90%), Gaps = 2/1319 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVI  VD+E+RHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMEVEKKTVADQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     KSDVRRKV+D GEREMRQLRDRAQRELDRLDEIW TFTKL+ KQLIVDE L
Sbjct: 181  IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIVDESL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KL+ENFDI+AEAESLRE IRSGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLMENFDIEAEAESLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVI EHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVINEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGL++LT  VEGA G YQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTREVEGAIGAYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
             A    PEQGVYSSPAEA MA+DRG LSV+AKIKVRLT  RPP ++EA+LF  GW  GD 
Sbjct: 601  PAADGQPEQGVYSSPAEAQMAVDRGVLSVQAKIKVRLTHQRPPREIEAELFPEGWNFGDG 660

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            W  ETTLGRVMFN+LLP  YPF+NEQM KK QA IINDLAER+PMIVVAQTVDK+KD GF
Sbjct: 661  WMVETTLGRVMFNDLLPADYPFINEQMPKKRQATIINDLAERYPMIVVAQTVDKMKDTGF 720

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            YWATRSGVTVS++DVLVPP+K +I+E+ EA+AD IE+KYQRGALNHTERN +LVKIW +A
Sbjct: 721  YWATRSGVTVSISDVLVPPEKAQIMEQFEAQADQIEKKYQRGALNHTERNSALVKIWSEA 780

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            T+EVGKA+E  +P DNPI  IVKSGA GN+TQ R+LAGMKGLVTNPKGEFIPRPIKSSF+
Sbjct: 781  TDEVGKAMEAHFPDDNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSFK 840

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI  T+
Sbjct: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGILTTI 900

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
            AE+  DGT+IRDAHVETS +ARTLA DA+D NGNV++ERGHDLGDPAIDALLAAGIT VK
Sbjct: 901  AEKAADGTMIRDAHVETSTYARTLAADAIDENGNVVVERGHDLGDPAIDALLAAGITQVK 960

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTCT+ATGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ    
Sbjct: 961  VRSVLTCTTATGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGAA 1020

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRVQELFEARVP+ KAPI +V+GRV+L++ D+F+KIT+VPDDGGEEVVYDK
Sbjct: 1021 GAADITGGLPRVQELFEARVPKGKAPITEVSGRVQLDDDDRFYKITVVPDDGGEEVVYDK 1080

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            LSKRQRLRV  H+DG+E +LSDGDHV+VG QL+EGAADPH+VLRV GPR+VQIHLV EVQ
Sbjct: 1081 LSKRQRLRVFKHDDGSERLLSDGDHVDVGQQLLEGAADPHDVLRVMGPRQVQIHLVNEVQ 1140

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL ERAEFEA NRRVVAEGGE
Sbjct: 1141 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLVERAEFEASNRRVVAEGGE 1200

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP
Sbjct: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1260

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGY-SDYR 1317
            AGTGI+RYRNIQVQPTEEARAAAY +PSY+DQYYSP+ FG  TGAAVPLDDYG+ SDYR
Sbjct: 1261 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPEGFGTGTGAAVPLDDYGFGSDYR 1319


>sp|Q0SFB4|RPOC_RHOSR Tax_Id=101510 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Rhodococcus
            sp.]
          Length = 1318

 Score = 2230 bits (5778), Expect = 0.0
 Identities = 1135/1319 (86%), Positives = 1195/1319 (90%), Gaps = 3/1319 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLA+A+DIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVI  VD+E+RHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKSVADQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     KSDVRRKV+D GEREMRQLRDRAQRELDRLDEIW TFTKL+ KQLIVDE+L
Sbjct: 181  IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIVDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KL+ENFDIDAEAE+LRE IRSGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLMENFDIDAEAENLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + NSPMGMVL+AVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQTNQNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
             QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLY+LT L EGA GE  
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRLDEGAIGELA 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
            A+T D  EQGVYSSPAEA MA+DRGAL V+AKIKVRLT+ RPP D+E++LF  GW  GD 
Sbjct: 601  ASTSDEAEQGVYSSPAEAQMAVDRGALVVQAKIKVRLTQQRPPRDIESELFPEGWNYGDG 660

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            WTAETTLGRV+FNELLP  YPFVNEQM KK QA IINDLAER+PMIVVAQTVDKLKDAGF
Sbjct: 661  WTAETTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDAGF 720

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            YWATRSGVTVS++DVLVPP+K +I+E  EA+AD IE+KYQRGALN TERN +LVKIW +A
Sbjct: 721  YWATRSGVTVSISDVLVPPEKAQIMESFEAQADQIEKKYQRGALNKTERNSALVKIWSEA 780

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            T+EVGKA+E  +P DNPI  IVKSGA GN+TQ R+LAGMKGLVTNPKGEFIPRPIKSSF+
Sbjct: 781  TDEVGKAMEAHFPDDNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSFK 840

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI  T+
Sbjct: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTTI 900

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
            AE+  DGTLIRDAHVETS +ARTLA DAVD NGNVI+ERGHDLGDPAIDALL AGIT VK
Sbjct: 901  AEKQADGTLIRDAHVETSTYARTLAADAVDENGNVIVERGHDLGDPAIDALLEAGITQVK 960

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTCT+ TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ    
Sbjct: 961  VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ-GGV 1019

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRVQELFEARVP+ KAPIADV+GRV+LE+ D+F+KITIVPDDGGEEVVYDK
Sbjct: 1020 AGDDITGGLPRVQELFEARVPKGKAPIADVSGRVQLEDGDRFYKITIVPDDGGEEVVYDK 1079

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            LSKRQRLRV  H+DGTE +L+DGDHVEVG QLMEGAADPHEVLRV GPR+VQIHLV EVQ
Sbjct: 1080 LSKRQRLRVFKHDDGTERLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQ 1139

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLTERA+FEA NRRVVAEGGE
Sbjct: 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERADFEAANRRVVAEGGE 1199

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP
Sbjct: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1317
            AGTGI+RYRNIQVQPTEEARAAAY +PSY+DQYYSPD FGQ TGAAVPLDDYG+S DYR
Sbjct: 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSNDYR 1318


>sp|C1AYV8|RPOC_RHOOB Tax_Id=632772 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Rhodococcus
            opacus]
          Length = 1318

 Score = 2226 bits (5768), Expect = 0.0
 Identities = 1132/1319 (85%), Positives = 1196/1319 (90%), Gaps = 3/1319 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLA+A+DIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVI  VD+E+RHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKTVADQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     KSDVRRKV+D GEREMRQLRDRAQRELDRLDEIW TFTKL+ KQLIVDE+L
Sbjct: 181  IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIVDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KL+E+FDIDAEAE+LRE IRSGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLMESFDIDAEAENLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + NSPMGMVL+AVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQANQNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
             QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLY+LT L EGATGE  
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRLDEGATGELA 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
            A+T +  EQGVYSSPAEA MA+DRGAL V+AKIKVRLT+ RPP D+EA+LF  GW  GD 
Sbjct: 601  ASTNEESEQGVYSSPAEAQMAVDRGALVVQAKIKVRLTQQRPPRDIEAELFPEGWNYGDG 660

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            WTAETTLGRV+FNELLP  YPFVNEQM KK QA IINDLAER+PMIVVAQTVDKLKDAGF
Sbjct: 661  WTAETTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDAGF 720

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            YWATRSGVTVS++DVLVPP+K +I+E  EA+AD IE+KYQRGALN TERN +LVKIW +A
Sbjct: 721  YWATRSGVTVSISDVLVPPEKAQIMESFEAQADQIEKKYQRGALNKTERNSALVKIWSEA 780

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            T+EVGKA+E  +P DNPI  IVKSGA GN+TQ R+LAGMKGLVTNPKGEFIPRPIKSSF+
Sbjct: 781  TDEVGKAMEAHFPDDNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSFK 840

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI  T+
Sbjct: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTTI 900

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
            AE+  DG++IRDAHVETS +ARTLA DAVD NGNVI+ERGHDLGDPAIDALL AGIT VK
Sbjct: 901  AEKQADGSMIRDAHVETSTYARTLAADAVDENGNVIVERGHDLGDPAIDALLEAGITQVK 960

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTCT+ TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ    
Sbjct: 961  VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ-GGV 1019

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRVQELFEARVP+ KAPIADV+GRV+LE+ D+F+KITIVPDDGGEEVVYDK
Sbjct: 1020 AGDDITGGLPRVQELFEARVPKGKAPIADVSGRVQLEDGDRFYKITIVPDDGGEEVVYDK 1079

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            LSKRQRLRV  H+DGTE +L+DGDHVEVG QLMEGAADPHEVLRV GPR+VQIHLV EVQ
Sbjct: 1080 LSKRQRLRVFKHDDGTERLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQ 1139

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLTERA+FEA NRRVVAEGGE
Sbjct: 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERADFEAANRRVVAEGGE 1199

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP
Sbjct: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1317
            AGTGI+RYRNIQVQPTEEARAAAY +PSY+DQYYSPD FG+ TGAAVPLDDYG+S DYR
Sbjct: 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGRNTGAAVPLDDYGFSNDYR 1318


>sp|C0ZVQ7|RPOC_RHOE4 Tax_Id=234621 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Rhodococcus
            erythropolis]
          Length = 1318

 Score = 2210 bits (5726), Expect = 0.0
 Identities = 1125/1319 (85%), Positives = 1188/1319 (90%), Gaps = 3/1319 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLA+A+DIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVI  VD+E+RHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKTVADQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     KSDVRRKV+D GEREMRQLRDRAQRELDRLDEIW TFTKL+ KQLI+DE+L
Sbjct: 181  IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIIDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+ L++NFD+DAEAESLRE IRSGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQILMQNFDLDAEAESLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ +GNSPMGMVL+AVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQTNGNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVER+R
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERKR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
             QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  VQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGL++LT L EG TGE  
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLDEGVTGELV 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
            A T D  EQGVYSSPAEA MA+DRGALSV+A+IKVRLT+ RPP DLE +LF  GWK GD 
Sbjct: 601  APTNDEAEQGVYSSPAEAQMAVDRGALSVQAQIKVRLTQQRPPRDLENELFPEGWKYGDG 660

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            WTA TTLGRV+FNELLP  YPFVNEQM KK QA IINDLAER+PMIVVAQTVDKLKD GF
Sbjct: 661  WTATTTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDVGF 720

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            YWATRSGVTVS++DVLVPP+K  I+E  EA+AD IE++YQRGAL+  ERN +LV IWQ+A
Sbjct: 721  YWATRSGVTVSISDVLVPPEKPAIIEDFEAQADKIEKQYQRGALDKKERNSALVTIWQEA 780

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            T++VGKA+E  +P  NPI  IVKSGA GN+TQ R+LAGMKGLVTNPKGEFIPRPIKSSF+
Sbjct: 781  TDKVGKAMEAHFPDSNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSFK 840

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI  T+
Sbjct: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTTI 900

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
            AE+  DGT+IRDAHVETS +ARTLA DAVDANG VI+ERGHDLGDPAIDALL AGITTVK
Sbjct: 901  AEKQADGTMIRDAHVETSTYARTLAADAVDANGTVIVERGHDLGDPAIDALLEAGITTVK 960

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTCT+ TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ    
Sbjct: 961  VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ-GGV 1019

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRVQELFEARVP+ KAPIADV GRV+LE+ D+F+KITIVPDDGGEEVVYDK
Sbjct: 1020 AGDDITGGLPRVQELFEARVPKGKAPIADVTGRVQLEDGDRFYKITIVPDDGGEEVVYDK 1079

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            LSKRQRLRV  H DG E +L+DGDHVEVG QLMEGAADPHEVLRV GPR+VQIHLV EVQ
Sbjct: 1080 LSKRQRLRVFKHADGRESLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQ 1139

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLTERAEFE+ NRRVVAEGGE
Sbjct: 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESANRRVVAEGGE 1199

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP
Sbjct: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1317
            AGTGI+RYRNIQVQPTEEARAAAY +PSY+DQYYSPD FGQ TGAAVPLDDYG+S DYR
Sbjct: 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSNDYR 1318


>tr|C3JJR1|C3JJR1_RHOER Tax_Id=596309 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6;[Rhodococcus erythropolis SK121]
          Length = 1318

 Score = 2208 bits (5721), Expect = 0.0
 Identities = 1124/1319 (85%), Positives = 1187/1319 (89%), Gaps = 3/1319 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLA+A+DIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVI  VD+E+RHNELSTL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKTVADQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     KSDVRRKV+D GEREMRQLRDRAQRELDRLDEIW TFTKL+ KQLI+DE+L
Sbjct: 181  IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIIDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+ L++NFD+DAEAESLRE IRSGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQILMQNFDLDAEAESLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ +GNSPMGMVL+AVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQTNGNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVER+R
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERKR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
             QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  VQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGL++LT L EG TGE  
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLDEGVTGELV 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
            A T D  EQGVYSSPAEA MA+DRGALSV+A+IKVRLT+ RPP DLE +LF  GW  GD 
Sbjct: 601  APTNDEAEQGVYSSPAEAQMAVDRGALSVQAQIKVRLTQQRPPRDLENELFPEGWNYGDG 660

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            WTA TTLGRV+FNELLP  YPFVNEQM KK QA IINDLAER+PMIVVAQTVDKLKD GF
Sbjct: 661  WTATTTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDVGF 720

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            YWATRSGVTVS++DVLVPP+K  I+E  EA+AD IE++YQRGAL+  ERN +LV IWQ+A
Sbjct: 721  YWATRSGVTVSISDVLVPPEKPAIIEDFEAQADKIEKQYQRGALDKKERNSALVTIWQEA 780

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            T++VGKA+E  +P  NPI  IVKSGA GN+TQ R+LAGMKGLVTNPKGEFIPRPIKSSF+
Sbjct: 781  TDKVGKAMEAHFPDSNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSFK 840

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI  T+
Sbjct: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTTI 900

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
            AE+  DGT+IRDAHVETS +ARTLA DAVDANG VI+ERGHDLGDPAIDALL AGITTVK
Sbjct: 901  AEKQADGTMIRDAHVETSTYARTLAADAVDANGTVIVERGHDLGDPAIDALLEAGITTVK 960

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTCT+ TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ    
Sbjct: 961  VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ-GGV 1019

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRVQELFEARVP+ KAPIADV GRV+LE+ D+F+KITIVPDDGGEEVVYDK
Sbjct: 1020 AGDDITGGLPRVQELFEARVPKGKAPIADVTGRVQLEDGDRFYKITIVPDDGGEEVVYDK 1079

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            LSKRQRLRV  H DG E +L+DGDHVEVG QLMEGAADPHEVLRV GPR+VQIHLV EVQ
Sbjct: 1080 LSKRQRLRVFKHADGRESLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQ 1139

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLTERAEFE+ NRRVVAEGGE
Sbjct: 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESANRRVVAEGGE 1199

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP
Sbjct: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1317
            AGTGI+RYRNIQVQPTEEARAAAY +PSY+DQYYSPD FGQ TGAAVPLDDYG+S DYR
Sbjct: 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSNDYR 1318


>tr|D5UTN7|D5UTN7_TSUPA Tax_Id=521096 SubName: Full=DNA-directed RNA
            polymerase, beta' subunit;[Tsukamurella paurometabola DSM
            20162]
          Length = 1318

 Score = 2177 bits (5641), Expect = 0.0
 Identities = 1103/1317 (83%), Positives = 1172/1317 (88%), Gaps = 4/1317 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDEL+IGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELKIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVIT VD+E RHNE STL            DQRD DLE RA+K    
Sbjct: 121  APKDLEKIIYFAAYVITEVDEEQRHNEQSTLEAEIESEKKVLADQRDVDLENRAKKLEDD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKV+D GEREMRQ+RDRAQR +D LDEIW TF KLAPK +IVDE L
Sbjct: 181  LAVLEAEGAKADQRRKVKDGGEREMRQIRDRAQRAIDELDEIWTTFVKLAPKDMIVDEKL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YRELQDRYGEYF GAMGAE+IKKLIENFDIDAEAE LREVIRSGKGQ             
Sbjct: 241  YRELQDRYGEYFKGAMGAEAIKKLIENFDIDAEAEILREVIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSP+GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLY+LTT    A G Y 
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTTEKADAQGAYT 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
            AA KD PE GVYSSPAEAIMA+D G LS++A IKVRLT  RPP ++EA+ F+  W+ G A
Sbjct: 601  AAKKDQPETGVYSSPAEAIMAVDLGELSIQAPIKVRLTNQRPPAEIEAEQFDGAWERGQA 660

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            WTAETTLGRV+FNELLP  YPFV+EQM KK QA IINDLAER+PMIVVAQTVDKLKD+GF
Sbjct: 661  WTAETTLGRVLFNELLPIDYPFVDEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDSGF 720

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            YWATRSGVTVSM+DVLVPP K+EIL+R+E  AD IERKY RGAL   ER ++LV+IW+ A
Sbjct: 721  YWATRSGVTVSMSDVLVPPSKKEILDRYEERADGIERKYARGALTSGERRDALVEIWKQA 780

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            T+EVGKA++++YP DNPI  I KSGATGN+TQ R LAGMKGLVTNPKGEFIPRPIKSSFR
Sbjct: 781  TDEVGKAIDDYYPEDNPITMIPKSGATGNMTQVRNLAGMKGLVTNPKGEFIPRPIKSSFR 840

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC T RGI V L
Sbjct: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCNTTRGIIVPL 900

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
            AE   DG+LIRDAHVETSA+ARTLA DA DA GNVI+ERGHDLGDP I+ALL AGI  VK
Sbjct: 901  AEVQADGSLIRDAHVETSAYARTLAEDAKDAKGNVIVERGHDLGDPQIEALLEAGIAEVK 960

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTCT+ TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ    
Sbjct: 961  VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--GG 1018

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRV ELFEARVP+ KAPIA+V+GR+RLE+ D+F+ ITI PDDG EEVVYDK
Sbjct: 1019 VGDDITGGLPRVTELFEARVPKGKAPIAEVSGRIRLEDDDRFYTITITPDDGSEEVVYDK 1078

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            +SKRQRLRV  H+DGTE +L+DGDHV+VG QL+EGAADPHEVLRV GPR+VQ+HLV EVQ
Sbjct: 1079 ISKRQRLRVFKHDDGTERLLADGDHVQVGQQLLEGAADPHEVLRVMGPRQVQVHLVNEVQ 1138

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            EVYR+QGVSIHDKHIE IVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE
Sbjct: 1139 EVYRSQGVSIHDKHIETIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1198

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAIN RSDKL GLKENVIIGKLIP
Sbjct: 1199 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINTRSDKLVGLKENVIIGKLIP 1258

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPD--FGQATGAAVPLDDYGYSD 1315
            AGTGI++YRNIQVQPTEEARAAAY++P+++DQYY P+  FG  +GAAVPLDDYG+SD
Sbjct: 1259 AGTGINKYRNIQVQPTEEARAAAYSVPTFDDQYYGPEGAFGAPSGAAVPLDDYGFSD 1315


>tr|D0L4Z5|D0L4Z5_GORB4 Tax_Id=526226 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6;[Gordonia bronchialis]
          Length = 1318

 Score = 2173 bits (5630), Expect = 0.0
 Identities = 1099/1320 (83%), Positives = 1176/1320 (89%), Gaps = 5/1320 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDEL+IGLATADDI NWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELKIGLATADDIHNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVT+AKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTKAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVIT+VDDE+RHNELSTL            DQRD DL  R QK    
Sbjct: 121  APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDVDLNERQQKLEQD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+DVRRKV+D  EREMR++RD AQRELD LDE+W+ FTKLAP+ LI+DE L
Sbjct: 181  LAELEAEGAKADVRRKVKDGAEREMRRMRDSAQRELDALDELWDKFTKLAPRDLIIDEKL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            Y +L +RYGEYFTG+MGAE+IKKL+E FDIDAEA+SLR+ IR+GKGQ             
Sbjct: 241  YHQLVERYGEYFTGSMGAEAIKKLLETFDIDAEADSLRDTIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSP+GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLN AQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNQAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P VWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PAVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTTL EGA GEY 
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTLTEGAVGEYT 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
             AT D  E+GVYSSPAEAIMA+DRGAL+V+++IKVRLT+ RPP ++EA+LF  GW  G  
Sbjct: 601  PATADDVERGVYSSPAEAIMAVDRGALTVQSRIKVRLTDQRPPAEIEAELFPEGWSFGQP 660

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            W A+TTLGRV+FNELLP  YP+VNEQM KK QA IINDLAER+PMIVVAQTVDKLKD GF
Sbjct: 661  WDADTTLGRVLFNELLPVEYPYVNEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDVGF 720

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            YWATRSGVTVSMADVLVPPQK EIL+++E  AD +ERK+QRGAL   ER ++LV+IW+ A
Sbjct: 721  YWATRSGVTVSMADVLVPPQKAEILDKYEERADGLERKFQRGALTPDERRDALVEIWKQA 780

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            TEEVG A+E  YP DNPI  IVKSGA GN+TQ R+LAGMKGLVTNPKGEFIPRPIKSSFR
Sbjct: 781  TEEVGAAMEAHYPDDNPIPMIVKSGAAGNMTQIRSLAGMKGLVTNPKGEFIPRPIKSSFR 840

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGLTV EYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI  T+
Sbjct: 841  EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGITTTI 900

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
            AER PDGTLIRDAHVETS +ARTLATDA+DA+GNVI+ERGHDLGDPAI+ALLAAGIT VK
Sbjct: 901  AERQPDGTLIRDAHVETSTYARTLATDALDADGNVIVERGHDLGDPAIEALLAAGITQVK 960

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTC + TGVCA CYGRSMATGKLVDIGEAVGI+AAQSIGEPGTQLTMRTFHQ    
Sbjct: 961  VRSVLTCATGTGVCAHCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQ--GG 1018

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRVQELFEARVP+  APIA+V+GRVRLE+ D+F+KITIVPDDG EEVV DK
Sbjct: 1019 VGDDITGGLPRVQELFEARVPKGVAPIAEVSGRVRLEDDDRFYKITIVPDDGSEEVVIDK 1078

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            +SKRQRLRV  H+DG+E +LSDGDHVEVG QLMEG+A+PHEVLRV GPR+VQ+HLV EVQ
Sbjct: 1079 ISKRQRLRVFKHDDGSERLLSDGDHVEVGQQLMEGSANPHEVLRVMGPRQVQVHLVNEVQ 1138

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            EVYR+QGVSIHDKHIE IVRQMLRRVTIID GSTEFLPGSL ERAEFEA NR+VVAEGGE
Sbjct: 1139 EVYRSQGVSIHDKHIETIVRQMLRRVTIIDHGSTEFLPGSLVERAEFEAANRQVVAEGGE 1198

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PAAGRPVLMGITKASLAT+SWLSAASFQETTRVLTDAAIN RSDKL GLKENVIIGKLIP
Sbjct: 1199 PAAGRPVLMGITKASLATESWLSAASFQETTRVLTDAAINSRSDKLIGLKENVIIGKLIP 1258

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPD--FGQATGAAVPLDDYGYS-DYR 1317
            AGTGI+RYRNIQVQPTEEARAAAY +PSY+D YYSPD  FG   GAAVPLDDYG+S DYR
Sbjct: 1259 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDGTFGAPAGAAVPLDDYGFSNDYR 1318


>tr|A4KEZ2|A4KEZ2_MYCTU Tax_Id=395095 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6;[Mycobacterium tuberculosis str. Haarlem]
          Length = 1289

 Score = 2118 bits (5489), Expect = 0.0
 Identities = 1088/1286 (84%), Positives = 1144/1286 (88%), Gaps = 12/1286 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V   TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPEDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMG-ITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKL 1258
            EPAA      G   +              +  TRVLTDAAINCRSDKLNGLKENVIIGKL
Sbjct: 1199 EPAARPSGADGHHERRRWPPTRGCRRRRSRRPTRVLTDAAINCRSDKLNGLKENVIIGKL 1258

Query: 1259 IPAGTGISRYRNIQVQPTEEARAAAY 1284
            IPAGT   RY     QP  + R AA+
Sbjct: 1259 IPAGT---RY-----QPLPQHRGAAH 1276


>tr|D6FMI2|D6FMI2_MYCTU Tax_Id=611304 SubName: Full=DNA-directed RNA
            polymerase subunit beta rpoC;[Mycobacterium tuberculosis
            K85]
          Length = 1242

 Score = 2101 bits (5444), Expect = 0.0
 Identities = 1065/1221 (87%), Positives = 1117/1221 (91%), Gaps = 3/1221 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITKASLATDS 1220
            EPAAGRPVLMGITKASLATDS
Sbjct: 1199 EPAAGRPVLMGITKASLATDS 1219


>tr|D5Z0Q0|D5Z0Q0_MYCTU Tax_Id=537209 SubName: Full=DNA-directed RNA
            polymerase beta subunit rpoC;[Mycobacterium tuberculosis
            GM 1503]
          Length = 1243

 Score = 2089 bits (5413), Expect = 0.0
 Identities = 1058/1214 (87%), Positives = 1110/1214 (91%), Gaps = 3/1214 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITK 1213
            EPAAGRPVLMGITK
Sbjct: 1199 EPAAGRPVLMGITK 1212


>tr|D5XQU7|D5XQU7_MYCTU Tax_Id=515617 SubName: Full=DNA-directed RNA
            polymerase subunit beta rpoC;[Mycobacterium tuberculosis
            T92]
          Length = 1233

 Score = 2085 bits (5403), Expect = 0.0
 Identities = 1056/1214 (86%), Positives = 1108/1214 (91%), Gaps = 3/1214 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LE RAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEVRAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPVLMGITK 1213
            EPAAGRPVL GITK
Sbjct: 1199 EPAAGRPVLTGITK 1212


>tr|D5YBE0|D5YBE0_MYCTU Tax_Id=520140 SubName: Full=DNA-directed RNA
            polymerase, beta-prime subunit; Flags:
            Fragment;[Mycobacterium tuberculosis EAS054]
          Length = 1206

 Score = 2076 bits (5380), Expect = 0.0
 Identities = 1051/1208 (87%), Positives = 1103/1208 (91%), Gaps = 3/1208 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LE RAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEVRAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  LASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAGRPV 1207
            EPAAGRPV
Sbjct: 1199 EPAAGRPV 1206


>tr|D5YNW2|D5YNW2_MYCTU Tax_Id=515616 SubName: Full=DNA-directed RNA
            polymerase beta subunit rpoC;[Mycobacterium tuberculosis
            02_1987]
          Length = 1233

 Score = 2072 bits (5368), Expect = 0.0
 Identities = 1049/1205 (87%), Positives = 1101/1205 (91%), Gaps = 3/1205 (0%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTL            DQRD +LEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659
             A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF  +GW+PGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
            AW AETTLGRVMFNELLP  YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  AD +E+++QRGALNH ERNE+LV+IW++
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            LAER PDGTLIRD ++ETSA+ARTL TDAVD  GNVI+ERG DLGDP IDALLAAGIT V
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ   
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQ--G 1018

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1019 GVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            K+SKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198

Query: 1200 EPAAG 1204
            EPAAG
Sbjct: 1199 EPAAG 1203


>sp|A4FPP2|RPOC_SACEN Tax_Id=405948 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit
            beta';[Saccharopolyspora erythraea]
          Length = 1303

 Score = 2036 bits (5276), Expect = 0.0
 Identities = 1030/1319 (78%), Positives = 1140/1319 (86%), Gaps = 18/1319 (1%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATADDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAA VTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAASVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSV+ EMRHNE+STL            DQRDADLEARAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVNTEMRHNEMSTLEAEIGVERKQIADQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     KSDVRRKV++ GEREMRQLRDRAQRELD+LDEIW TFTKL P+QLI DE+L
Sbjct: 181  LAELEQEGAKSDVRRKVKEGGEREMRQLRDRAQRELDKLDEIWETFTKLEPRQLIADELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DR+GEYFTG MGAESI+ L+++FDI+AEA+ LRE IRSGKGQ             
Sbjct: 241  YRELYDRFGEYFTGGMGAESIQALLQDFDINAEADQLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ +GN+P GMVL+ VPVIPP+LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQATGNNPSGMVLNCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPK MA+ELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKEMAVELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLY+LT  ++GA GE Q
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRQLDGAKGEGQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
            +          +SS  EAIMA DRG L ++AK+K+R+ +L P     A+     W+PG  
Sbjct: 601  S----------FSSVGEAIMAFDRGGLDLQAKVKIRVRDLVP----NAEQRPEDWEPGQP 646

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            W AETTLGRV FNELLP+ YPFVN+ + KK QA I+NDLAER+PM+ VAQT+DKLKDAGF
Sbjct: 647  WLAETTLGRVWFNELLPEDYPFVNDLLPKKRQAAIVNDLAERYPMVTVAQTLDKLKDAGF 706

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            +WATRSGVTVS++DV+VPP K EIL+ +EA+AD +E++Y+RGAL++ ERN  LVK+W  A
Sbjct: 707  HWATRSGVTVSISDVVVPPNKTEILDGYEAKADQVEKRYRRGALSYQERNAELVKVWTAA 766

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
             +EV +A+E  +P DN I  IVKSGA GN+TQ   LAGM+GLV+NPKGE+IPRPIK++FR
Sbjct: 767  KDEVAEAMEANFPEDNSISMIVKSGAAGNMTQVVQLAGMRGLVSNPKGEYIPRPIKANFR 826

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGL+VLEYFI+ HGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI + +
Sbjct: 827  EGLSVLEYFISNHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGIRMPI 886

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
            AE+ PDG L+RDAHVETS +ART A D  D++GNV++ RG DLGDPAI+ LLAAG+T VK
Sbjct: 887  AEKLPDGKLLRDAHVETSVYARTTAEDVTDSDGNVVLARGSDLGDPAIEKLLAAGVTKVK 946

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTC S  GVCA+CYGRSMATGKLVD+GEAVGIVAAQSIGEPGTQLTMRTFHQ    
Sbjct: 947  VRSVLTCESGVGVCAVCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQ-GGV 1005

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRVQELFEARVP+ KAPIAD  GR+R+E++D+++KITI+PDDG EE+VYDK
Sbjct: 1006 AGDDITTGLPRVQELFEARVPKGKAPIADAPGRIRMEDNDRYWKITIIPDDGSEEIVYDK 1065

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            LSKRQRL  I+  DGTE  ++DGDHV+VG QL+EGA DPHEVLRV GPRE Q+HLV+EVQ
Sbjct: 1066 LSKRQRLAAIS-VDGTERQITDGDHVDVGQQLLEGAVDPHEVLRVMGPREAQLHLVREVQ 1124

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            EVYR+QGV IHDKH+EVIVRQMLRRV IIDSG+TEFLPGS  ER++FE ENRRVVAEGG+
Sbjct: 1125 EVYRSQGVGIHDKHVEVIVRQMLRRVIIIDSGATEFLPGSPVERSQFEGENRRVVAEGGD 1184

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PA+GRPVLMGITKASLAT+SWLSAASFQETTR+LT+AAI   SDKL GLKENVIIGKLIP
Sbjct: 1185 PASGRPVLMGITKASLATESWLSAASFQETTRILTNAAIEGASDKLVGLKENVIIGKLIP 1244

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1317
            AGTGI+RYRNIQVQPTEEARAAAY IPSY+D YY+PD FG  TGAAVPLDDY +  DYR
Sbjct: 1245 AGTGINRYRNIQVQPTEEARAAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDYR 1303


>tr|C7MTI8|C7MTI8_SACVD Tax_Id=471857 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6;[Saccharomonospora viridis]
          Length = 1303

 Score = 2024 bits (5243), Expect = 0.0
 Identities = 1027/1319 (77%), Positives = 1125/1319 (85%), Gaps = 18/1319 (1%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATADDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVITSV+ E+R N+L TL            ++RDA++E RAQK    
Sbjct: 121  APKDLEKIIYFAAYVITSVNTELRQNDLPTLENEINVERKNIENKRDAEIEQRAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+DVRRKV++SGEREMRQ+RDRAQRELDRL+E+W TFTKL P+QLIVDE L
Sbjct: 181  LAELEAEGAKADVRRKVKESGEREMRQIRDRAQRELDRLEEVWTTFTKLEPRQLIVDEQL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTG MGAE+I+KL   FD+DAEAE+LRE IR+GKGQ             
Sbjct: 241  YRELYDRYGEYFTGGMGAEAIQKLASEFDVDAEAEALRETIRTGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ +GN P GMVLDA+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQSTGNDPRGMVLDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVI+VGPQLKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVER R
Sbjct: 421  RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVI  HPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVINGHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEARILMLS+NNILSPASG+PLAMPRLDMVTGL++LT L E A G   
Sbjct: 541  MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLDENAKGAGA 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
            A          YSSPAEAIMA DRG L++ A +K+R+ + +PP   EA L E GW+PG  
Sbjct: 601  A----------YSSPAEAIMAYDRGQLALHAPVKIRIHDRQPPKSEEAALREKGWEPGKP 650

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            W AETTLGRV+FN+LLP+ YPFVNE + KK QA I+NDLAER+ M  VAQT+D LKDAGF
Sbjct: 651  WLAETTLGRVLFNDLLPEDYPFVNEVLPKKRQAAIVNDLAERYSMTQVAQTLDGLKDAGF 710

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            +WATRSGVT+S+ DV+VPPQKQE+LE++EA+A  +E++YQRG L+H ERN  LVK+W  A
Sbjct: 711  HWATRSGVTISITDVVVPPQKQELLEQYEAKAAQVEKRYQRGQLSHAERNNELVKVWSQA 770

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            TE+V KA+EE  P DNPI  IVKSGA GN+TQ R+LAGM+GLV+NPKGE+IPRPIK++FR
Sbjct: 771  TEDVAKAMEENLPDDNPIAMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKANFR 830

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGLTV EYFI THGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC T RGI  T+
Sbjct: 831  EGLTVAEYFIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTSRGITRTI 890

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
            A+  PDG L+R  HVETS +AR LA DAVD  GNVI+  G DL DPAI+ L+ AGI+ VK
Sbjct: 891  ADELPDGRLVRAEHVETSVYARNLAADAVDEQGNVILNAGEDLSDPAIERLIQAGISKVK 950

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTC SA GVCA CYGRSMATGKLVD+GEAVGIVAAQSIGEPGTQLTMRTFHQ    
Sbjct: 951  VRSVLTCESAMGVCATCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQ-GGV 1009

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRV ELFEARVP+ KAPIADV GRVR+EES++F+KIT++PDDG EE+V+DK
Sbjct: 1010 AGDDITTGLPRVTELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGSEEIVFDK 1069

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            LSKRQRL +     G  G L+DGDHV+VG  L+EG  DPHEVLRV GPRE Q+HLV+EVQ
Sbjct: 1070 LSKRQRLAI-----GPNGPLADGDHVKVGQPLLEGTPDPHEVLRVMGPREAQMHLVEEVQ 1124

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            +VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPG L ER++FE  NR+ VAEGGE
Sbjct: 1125 KVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGELPERSKFEQVNRKAVAEGGE 1184

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PA+GRPVLMGITKASL TDSWLSAASFQETTRVLTDAAIN RSD L GLKENVIIGKLIP
Sbjct: 1185 PASGRPVLMGITKASLTTDSWLSAASFQETTRVLTDAAINGRSDALIGLKENVIIGKLIP 1244

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1317
            AGTGI+RYRNIQVQPTEEAR AAY IPSY+D YY+PD FG  TGAAVPLDDY +  D+R
Sbjct: 1245 AGTGINRYRNIQVQPTEEARVAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDFR 1303


>tr|C6WN59|C6WN59_ACTMD Tax_Id=446462 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6;[Actinosynnema mirum]
          Length = 1298

 Score = 1978 bits (5125), Expect = 0.0
 Identities = 1010/1319 (76%), Positives = 1114/1319 (84%), Gaps = 23/1319 (1%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATADDIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAYVI  V+ E+RH +  TL            ++RDAD+EARAQK    
Sbjct: 121  APKDLEKIIYFAAYVIVGVNAELRHTDQPTLDSEMQVERKRVENRRDADVEARAQKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     KSDVRRKV++ GEREMRQLRDRAQRELDRLDEIW+TF KL   QLI DE L
Sbjct: 181  LAELEAEGAKSDVRRKVKEGGEREMRQLRDRAQRELDRLDEIWSTFVKLERAQLIADEQL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL DRYG+YFTGAMGAE+I+KL+ ++D+DAEAE LRE IRSGKGQ             
Sbjct: 241  YRELYDRYGDYFTGAMGAEAIQKLLGDYDVDAEAEVLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + N+P GMVLD VPVIPP+LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQATRNNPQGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVER R
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P VWDVLEEVI EHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PAVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVHLPLSAEAQAEAR+LMLSSNNILSPASGKPLAMPRLDMVTGLY+LT   E   GE Q
Sbjct: 541  MAVHLPLSAEAQAEARVLMLSSNNILSPASGKPLAMPRLDMVTGLYHLTWHKEDDLGEGQ 600

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA 660
            A          YSSPAEA MA DR AL ++A  K+R+T+  PP   E +    GW+PG  
Sbjct: 601  A----------YSSPAEAQMAFDRKALGLQAMCKIRITDKNPPRGQEPE----GWEPGQP 646

Query: 661  WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF 720
            W AETTLGRV+FNE+LP+ YPF+NE M KK QA +INDLAER+PM+ VA+T+DKLKDAGF
Sbjct: 647  WLAETTLGRVLFNEVLPQDYPFLNEVMPKKRQATVINDLAERYPMVTVARTLDKLKDAGF 706

Query: 721  YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA 780
            +WATRSGVTV+++DVLVP  KQ IL+ +E  ADA+E++YQRG L++TERN  LVK+W  A
Sbjct: 707  HWATRSGVTVAISDVLVPEAKQGILDEYEKLADAVEKRYQRGQLSYTERNNELVKVWTKA 766

Query: 781  TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR 840
            TE+V + +E+ +P DN I  IVKSGA GN+TQ R+LAGM+GLVTNPKGE+IPRPIK+SFR
Sbjct: 767  TEDVAQVMEDNFPEDNSIRKIVKSGAAGNMTQVRSLAGMRGLVTNPKGEYIPRPIKNSFR 826

Query: 841  EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL 900
            EGL+VLEYFI THGARKGLADTALRTADSGYLTRRLVDVSQDVI+RE DC T RG+ +T+
Sbjct: 827  EGLSVLEYFIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREIDCGTTRGVGMTV 886

Query: 901  AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK 960
             E   D   + +   +TS +ARTLA D  D +GN+++ RG DLGDPA+  L+   +  VK
Sbjct: 887  GEVLSDRVGLHE-FAQTSVYARTLAEDITDKDGNLVLNRGDDLGDPALQTLVTNNVVRVK 945

Query: 961  VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXXX 1020
            VRSVLTC SA GVCA CYGRSMATG+LVD+GEAVGIVAAQSIGEPGTQLTMRTFHQ    
Sbjct: 946  VRSVLTCESAVGVCASCYGRSMATGQLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQ-GGV 1004

Query: 1021 XXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK 1080
                    LPRVQELFEARVP+ KAPIADV GRVR+E+ D+F+KIT++PDDG EE++++K
Sbjct: 1005 AGDDITTGLPRVQELFEARVPKGKAPIADVDGRVRIEDGDRFWKITLIPDDGSEEILFEK 1064

Query: 1081 LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ 1140
            LSKRQRL      +   G L DGDHV VG QL+EG  DPHEVLRV GPRE Q+HLV+EVQ
Sbjct: 1065 LSKRQRL-----ANTATGPLQDGDHVSVGQQLLEGTPDPHEVLRVMGPREAQLHLVQEVQ 1119

Query: 1141 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE 1200
            +VYRAQGV+IHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL ERA+FE+ NR+VVAEGGE
Sbjct: 1120 KVYRAQGVAIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLVERADFESGNRQVVAEGGE 1179

Query: 1201 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAIN RSDKL GLKENVIIGKLIP
Sbjct: 1180 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINGRSDKLIGLKENVIIGKLIP 1239

Query: 1261 AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1317
            AGTGI+RYRNIQVQPTEEARAAAY IPSY+D YY+PD FG  TGAAVPLDDY +  DYR
Sbjct: 1240 AGTGINRYRNIQVQPTEEARAAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDYR 1298


>tr|C8XBL0|C8XBL0_NAKMY Tax_Id=479431 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6;[Nakamurella multipartita]
          Length = 1308

 Score = 1921 bits (4977), Expect = 0.0
 Identities = 977/1320 (74%), Positives = 1103/1320 (83%), Gaps = 15/1320 (1%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATADDIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRAWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
             CGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   ACGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAAY+IT+VD+  RHN+L T+            + RDAD++ARA+K    
Sbjct: 121  APKDLEKIIYFAAYLITAVDETARHNDLPTIEAEMGVERKNLENARDADIDARAKKLEAD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     KSDVRRKVR+ GERE RQ+RDRAQR +DRLDE+ + F KL+ +QLIVDEVL
Sbjct: 181  LAELEAEGAKSDVRRKVREGGEREQRQIRDRAQRAIDRLDEVLDLFRKLSVRQLIVDEVL 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            YREL+DR+G+YFTG MGAE++K++I +FDIDAE E LR+ I++GKGQ             
Sbjct: 241  YRELEDRFGDYFTGGMGAEALKQIISDFDIDAEVEILRDTIKNGKGQRKIRAIKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + NSP+GMVLD VPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQMTQNSPLGMVLDCVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVI+ HPV+LNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVC AFNADFDGDQ
Sbjct: 481  PQVWDVLEEVISAHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600
            MAVH+PLS+EAQAEAR+LMLSSNNILSP SG+PLAMP LD+VTGLYYL          Y+
Sbjct: 541  MAVHVPLSSEAQAEARVLMLSSNNILSPGSGRPLAMPSLDLVTGLYYLC--------GYK 592

Query: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLT-ELRPPTDLEAQLFENGWKPGD 659
               K A    V+SSPAE IMA+D G + +RA IKVRL   ++P  D  A L E+ ++ G 
Sbjct: 593  PEAKGA--GSVFSSPAEGIMALDAGLIDLRAPIKVRLPGSVKPSKDTLAALGED-YEAGQ 649

Query: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719
             W AETTLGRV+FNELLP  YPFVNE++ KK QA I+NDLAE +PM VVAQ +D+LK+AG
Sbjct: 650  PWLAETTLGRVLFNELLPDGYPFVNEELPKKRQAVIVNDLAEHYPMSVVAQVLDRLKEAG 709

Query: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779
            F+WATRSG+TV++ DV++PP+K+EIL RHE EA+ +E+ YQRG L+H ERN+ LVKIW+ 
Sbjct: 710  FHWATRSGMTVAIGDVIIPPEKEEILLRHEIEAERVEKAYQRGNLSHEERNDDLVKIWEA 769

Query: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839
            AT E+ +AL   YPADNP+ T+V +GA GN  Q R+LAGMKG+V N KG+ IPRPI+SSF
Sbjct: 770  ATREIEEALPPAYPADNPVSTLVNAGAAGNWIQVRSLAGMKGVVANSKGQQIPRPIRSSF 829

Query: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899
            REGL+VLEYFINTH ARKGLADTALRTA+SGYLTRRLVDVSQDVIVRE DC TERG+ + 
Sbjct: 830  REGLSVLEYFINTHSARKGLADTALRTAESGYLTRRLVDVSQDVIVRETDCGTERGVTLP 889

Query: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959
            +A+R  DG+L  +  +ETS   R LA D V  +G V++  G D+ +  +   + AGIT  
Sbjct: 890  MADRYADGSLHINEFIETSVQGRVLAGDLVAEDGTVVVPAGTDMREHHVRDAVNAGITLA 949

Query: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQXXX 1019
            KVRSVLTC +A G CA+CYGRS+ATG LVD+GEAVGIVAAQSIGEPGTQLTMRTFH    
Sbjct: 950  KVRSVLTCEAAIGTCAVCYGRSLATGNLVDVGEAVGIVAAQSIGEPGTQLTMRTFHTGAA 1009

Query: 1020 XXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079
                     LPRVQELFEARVP+ KAPIAD AGR+R+E++DKFFKI + PDDG EE+VY+
Sbjct: 1010 SGSSDITQGLPRVQELFEARVPKGKAPIADAAGRIRIEDADKFFKIIVTPDDGSEEIVYE 1069

Query: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139
            KL K QRL  +T  DG+E +L DGDHV VG QL+EG  DPHEVLRV G REVQ+HLV+EV
Sbjct: 1070 KLPKTQRLATMT-VDGSERLLVDGDHVSVGQQLLEGNPDPHEVLRVMGQREVQLHLVREV 1128

Query: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199
            Q VYR+QGV IHDKHIEVI+RQMLRRVTIIDSGSTEFLPG++ ER EFEA NRRV+AEGG
Sbjct: 1129 QNVYRSQGVGIHDKHIEVIIRQMLRRVTIIDSGSTEFLPGAVIERKEFEASNRRVLAEGG 1188

Query: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259
            EPAAGRP LMGITKASLAT+SWLSAASFQETTRVLTDAAIN +SDKL GLKENVIIGKLI
Sbjct: 1189 EPAAGRPALMGITKASLATESWLSAASFQETTRVLTDAAINAKSDKLVGLKENVIIGKLI 1248

Query: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1317
            PAGTGI+RYR+IQVQPTEEARAAAYT+PS++D YY  D FG ATGAAVPLDD+    DYR
Sbjct: 1249 PAGTGIARYRDIQVQPTEEARAAAYTLPSFDDTYYGADTFGVATGAAVPLDDFDLGRDYR 1308


>sp|Q4JT33|RPOC_CORJK Tax_Id=306537 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit
            beta';[Corynebacterium jeikeium]
          Length = 1323

 Score = 1867 bits (4837), Expect = 0.0
 Identities = 955/1322 (72%), Positives = 1087/1322 (82%), Gaps = 15/1322 (1%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATADDIR WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRRWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
             CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   GCGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAA +ITSVD+E RHN+ STL             +RDA+L  RA+     
Sbjct: 121  APKDLEKIIYFAANIITSVDEEGRHNDQSTLEAEMLLEKKEVEQERDAELADRAKTLEDD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D ++KV+++ +REMR +R+RA+RE+DRLDEIWNTF KLAPKQ+IVDE +
Sbjct: 181  LAELEAAGAKNDAKKKVQNAADREMRHIRERAEREIDRLDEIWNTFVKLAPKQMIVDENI 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            Y EL DRY +YFTG MGAE+I+ LI +FD++AEAESLREVIR GKGQ             
Sbjct: 241  YNELVDRYEDYFTGGMGAEAIQTLIRSFDLEAEAESLREVIRDGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             F +SGN P GMVLD +PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR++DL
Sbjct: 301  AFLRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMLDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVI+VGPQLKLHQCGLPKLMALELFKPFVMKRLV+ ++AQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVEKSYAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P+VWDVLEE IAEHPV+LNRAPTLHRLGIQAFEP LVEGKAIQLHPL CEAFNADFDGDQ
Sbjct: 481  PEVWDVLEEAIAEHPVMLNRAPTLHRLGIQAFEPILVEGKAIQLHPLACEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVE----GAT 596
            MAVHLPLSAEAQAEARILML+SNNILSPASGKPLAMPRLDMVTGLYYLT L +    G  
Sbjct: 541  MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTLLKKPEEFGGQ 600

Query: 597  GEYQAATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWK 656
            G Y  AT+D P QGVYSS AEAIMA DRG L ++A I VR++ LRP  ++EA+LF +GW+
Sbjct: 601  GAYAPATEDGPAQGVYSSLAEAIMAYDRGVLGLQAPIHVRISHLRPTAEIEAELFPDGWQ 660

Query: 657  PGDAWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLK 716
             G  W AETTLGRV+FNELLP +YP+V   M KK QA +INDLA ++PMI VAQTVDKLK
Sbjct: 661  RGQTWLAETTLGRVLFNELLPWNYPYVEGVMAKKPQASVINDLAAKYPMITVAQTVDKLK 720

Query: 717  DAGFYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKI 776
            DAGFYWATRSGVT++M DVLV P KQE+L+ +EA+A  IE+K  RG +N  ER +SLV +
Sbjct: 721  DAGFYWATRSGVTITMHDVLVLPNKQEVLDNYEAKARVIEKKMARGKINEAERYQSLVDL 780

Query: 777  WQDATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIK 836
            W++AT+ VG+++E+ YP DNPI  IVKSGA GN+ Q  TLAGMKG+VTN +GE+I RPIK
Sbjct: 781  WKEATDYVGQSVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVTNSRGEYITRPIK 840

Query: 837  SSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERG- 895
            +SFREGL+VLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVRE DC T++G 
Sbjct: 841  TSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTKQGA 900

Query: 896  -----INVTLAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDA 950
                 + V  AE  P G       VETS   R LA+DA  ++G VI+  G  +G+  + A
Sbjct: 901  VVPVAVPVLDAEGKPTGNYTAADFVETSVLGRYLASDATASDGTVIVAEGDVVGEGELQA 960

Query: 951  LLAAGITTVKVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLT 1010
            LL AG+  VKVRSV+TC + TGVC+ CYGRSMATGK V+IGEAVGIVAAQSIGEPGTQLT
Sbjct: 961  LLEAGVEEVKVRSVMTCATNTGVCSTCYGRSMATGKKVEIGEAVGIVAAQSIGEPGTQLT 1020

Query: 1011 MRTFHQXXXXXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPD 1070
            MRTFH             LPRVQELFEARVP+ K+PIA V G+VR+E+ D FF +TI PD
Sbjct: 1021 MRTFH--LGGVGGDITGGLPRVQELFEARVPKAKSPIASVDGKVRIEDDDNFFTLTIEPD 1078

Query: 1071 DGGEEVVYDKLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPRE 1130
            DG ++VVY+KLSKRQ L  +    G E  + DGDHV++G QL++GAADPHEVLRV G R 
Sbjct: 1079 DGSDDVVYEKLSKRQGLATL-GTGGVERPIRDGDHVKMGQQLLKGAADPHEVLRVMGRRG 1137

Query: 1131 VQIHLVKEVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAE 1190
            VQ HL+ EVQ+VYR QGV+IHDKHIE+IVRQMLRRVT+IDSGSTEFLPGSL + A+  A 
Sbjct: 1138 VQQHLINEVQKVYRDQGVAIHDKHIEIIVRQMLRRVTVIDSGSTEFLPGSLVDHADAVAA 1197

Query: 1191 NRRVVAEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLK 1250
            ++  V  GG P   R  +MGITKASLAT+SWLSAASFQETTRVLTDAAIN RSDKL GLK
Sbjct: 1198 SKEAVKTGGRPVEVRAEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLK 1257

Query: 1251 ENVIIGKLIPAGTGISRYRNIQVQPTEEARAAAYTIP-SYEDQYYSPD-FGQATGAAVPL 1308
            ENVIIGKLIPAGTGISRYRNI V+PTEEARAAAY++P S+ D +Y+ D +G+ TGAAVPL
Sbjct: 1258 ENVIIGKLIPAGTGISRYRNISVEPTEEARAAAYSLPSSFGDGFYADDTYGEFTGAAVPL 1317

Query: 1309 DD 1310
            DD
Sbjct: 1318 DD 1319


>tr|C8RUP2|C8RUP2_CORJE Tax_Id=525262 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6;[Corynebacterium jeikeium ATCC 43734]
          Length = 1323

 Score = 1860 bits (4818), Expect = 0.0
 Identities = 949/1322 (71%), Positives = 1088/1322 (82%), Gaps = 15/1322 (1%)

Query: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            MLDVNFFDELRIGLATADDIR WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRRWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
             CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   GCGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLXXXXXXXXXXXXDQRDADLEARAQKXXXX 180
            APKDLEKIIYFAA +ITSVD+E RHN+ STL             +RDA+L  RA+     
Sbjct: 121  APKDLEKIIYFAANIITSVDEEGRHNDQSTLEAEMLLEKKEVEQERDAELADRAKTLEDD 180

Query: 181  XXXXXXXXXKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240
                     K+D ++KV+++ +REMR +R+RA+RE+DRLDEIWNTF KLAPKQ+IVDE +
Sbjct: 181  LAELEAAGAKNDAKKKVQNAADREMRHIRERAEREIDRLDEIWNTFVKLAPKQMIVDENI 240

Query: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQXXXXXXXXXXXXX 300
            Y EL DRY +YFTG MGAE+I+ LI +FD++AEAESLRE+IR GKGQ             
Sbjct: 241  YNELVDRYEDYFTGGMGAEAIQTLIRSFDLEAEAESLREIIRDGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             F +SGN P GMVLD +PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR++DL
Sbjct: 301  AFLRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMLDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVI+VGPQLKLHQCGLPKLMALELFKPFVMKRLV+ ++AQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVEKSYAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P+VWDVLEE IAEHPV+LNRAPTLHRLGIQAFEP LVEGKAIQLHPL CEAFNADFDGDQ
Sbjct: 481  PEVWDVLEEAIAEHPVMLNRAPTLHRLGIQAFEPILVEGKAIQLHPLACEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVE----GAT 596
            MAVHLPLSAEAQAEARILML+SNNILSPASGKPLAMPRLDMVTGLYYLT L +    G  
Sbjct: 541  MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTLLKKPEEFGGQ 600

Query: 597  GEYQAATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWK 656
            G +  AT++ P QGVYSS AEAIMA DRG L ++A I VR++ LRP  ++EA+LF +GW+
Sbjct: 601  GAFAPATEEGPAQGVYSSLAEAIMAYDRGVLGLQAPIHVRISHLRPTAEIEAELFPDGWQ 660

Query: 657  PGDAWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLK 716
             G  W AETTLGRV+FNELLP +YP+V   M KK QA +INDLA ++PMI VAQTVDKLK
Sbjct: 661  RGQTWLAETTLGRVLFNELLPWNYPYVEGVMAKKPQAAVINDLAAKYPMITVAQTVDKLK 720

Query: 717  DAGFYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKI 776
            DAGFYWATRSGVT++M DVLV P KQE+L+ +EA+A  IE+K  RG +N  ER +SLV +
Sbjct: 721  DAGFYWATRSGVTITMHDVLVLPNKQEVLDNYEAKARVIEKKMARGKINEAERYQSLVDL 780

Query: 777  WQDATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIK 836
            W++AT+ VG+++E+ YP DNPI  IVKSGA GN+ Q  TLAGMKG+VTN +GE+I RPIK
Sbjct: 781  WKEATDFVGQSVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVTNSRGEYITRPIK 840

Query: 837  SSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERG- 895
            +SFREGL+VLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVRE DC T++G 
Sbjct: 841  TSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTKQGA 900

Query: 896  -----INVTLAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDA 950
                 + V  AE  P G       VETS   R LA+DA  ++G V++  G+ +G+  + A
Sbjct: 901  VMPVAVPVLDAEGKPTGNYTPADFVETSVLGRYLASDATASDGTVVVAEGNVIGEGELKA 960

Query: 951  LLAAGITTVKVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLT 1010
            L+ AG+  VKVRSV+TC + TGVC+ CYGRSMATGK V+IGEAVGIVAAQSIGEPGTQLT
Sbjct: 961  LIEAGVEEVKVRSVMTCATNTGVCSTCYGRSMATGKKVEIGEAVGIVAAQSIGEPGTQLT 1020

Query: 1011 MRTFHQXXXXXXXXXXXXLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPD 1070
            MRTFH             LPRVQELFEARVP+ K+PIA V G+VR+E+ D FF +TI PD
Sbjct: 1021 MRTFH--LGGVGGDITGGLPRVQELFEARVPKAKSPIASVDGKVRIEDDDNFFTLTIEPD 1078

Query: 1071 DGGEEVVYDKLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPRE 1130
            DG ++VVY+KLSKRQ L  +    G E  + +GDHV++G QL++GAADPHEVLRV G R 
Sbjct: 1079 DGSDDVVYEKLSKRQGLATL-GTGGVERPIRNGDHVKMGQQLLKGAADPHEVLRVLGRRG 1137

Query: 1131 VQIHLVKEVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAE 1190
            VQ HL+ EVQ+VYR QGV+IHDKHIE+IVRQMLRRVT+IDSGSTEFLPGSL + A+  A 
Sbjct: 1138 VQQHLINEVQKVYRDQGVAIHDKHIEIIVRQMLRRVTVIDSGSTEFLPGSLVDHADAVAA 1197

Query: 1191 NRRVVAEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLK 1250
            ++  V  GG P   R  +MGITKASLAT+SWLSAASFQETTRVLTDAAIN RSDKL GLK
Sbjct: 1198 SKEAVKAGGRPVEVRAEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLK 1257

Query: 1251 ENVIIGKLIPAGTGISRYRNIQVQPTEEARAAAYTIP-SYEDQYYSPD-FGQATGAAVPL 1308
            ENVIIGKLIPAGTGISRYRNI V+PTEEARAAAY++P S+ D +Y+ D +G+ TGAAVPL
Sbjct: 1258 ENVIIGKLIPAGTGISRYRNISVEPTEEARAAAYSLPSSFGDGFYADDTYGEFTGAAVPL 1317

Query: 1309 DD 1310
            DD
Sbjct: 1318 DD 1319


  Database: Amellifera_nr
    Posted date:  Jul 23, 2010  5:10 AM
  Number of letters in database: 4,236,830,644
  Number of sequences in database:  12,507,864
  
Lambda     K      H
   0.318    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 12507864
Number of Hits to DB: 10,216,092,720
Number of extensions: 427226138
Number of successful extensions: 1127666
Number of sequences better than 10.0: 10035
Number of HSP's gapped: 1112327
Number of HSP's successfully gapped: 17293
Length of query: 1317
Length of database: 4,236,830,644
Length adjustment: 151
Effective length of query: 1166
Effective length of database: 2,348,143,180
Effective search space: 2737934947880
Effective search space used: 2737934947880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 87 (38.1 bits)