BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_1473 (61 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|A0QSG7|RL30_MYCS2 Tax_Id=246196 (rpmD)RecName: Full=50S ribos... 120 5e-26 sp|A4TED3|RL30_MYCGI Tax_Id=350054 (rpmD)RecName: Full=50S ribos... 112 1e-23 sp|A1T4S4|RL30_MYCVP Tax_Id=350058 (rpmD)RecName: Full=50S ribos... 110 6e-23 sp|A3PVE3|RL30_MYCSJ Tax_Id=164757 (rpmD)RecName: Full=50S ribos... 106 8e-22 sp|Q1BD87|RL30_MYCSS Tax_Id=164756 (rpmD)RecName: Full=50S ribos... 104 4e-21 sp|A1UBQ6|RL30_MYCSK Tax_Id=189918 (rpmD)RecName: Full=50S ribos... 104 4e-21 sp|B1MGC4|RL30_MYCA9 Tax_Id=561007 (rpmD)RecName: Full=50S ribos... 99 2e-19 sp|P66181|RL30_MYCTU Tax_Id=1773 (rpmD)RecName: Full=50S ribosom... 96 2e-18 sp|A5U0A8|RL30_MYCTA Tax_Id=419947 (rpmD)RecName: Full=50S ribos... 96 2e-18 sp|C1AL56|RL30_MYCBT Tax_Id=561275 (rpmD)RecName: Full=50S ribos... 96 2e-18 sp|A1KGK3|RL30_MYCBP Tax_Id=410289 (rpmD)RecName: Full=50S ribos... 96 2e-18 sp|P66182|RL30_MYCBO Tax_Id=1765 (rpmD)RecName: Full=50S ribosom... 96 2e-18 tr|C6DUN7|C6DUN7_MYCTK Tax_Id=478434 (rpmD)RecName: Full=50S rib... 96 2e-18 tr|A5WK90|A5WK90_MYCTF Tax_Id=336982 (rpmD)RecName: Full=50S rib... 96 2e-18 tr|D6G024|D6G024_MYCTU Tax_Id=478435 SubName: Full=50S ribosomal... 96 2e-18 tr|D6FN19|D6FN19_MYCTU Tax_Id=611304 SubName: Full=50S ribosomal... 96 2e-18 tr|D6FEN3|D6FEN3_MYCTU Tax_Id=611303 SubName: Full=50S ribosomal... 96 2e-18 tr|D6F1Z1|D6F1Z1_MYCTU Tax_Id=611302 SubName: Full=LSU ribosomal... 96 2e-18 tr|D5ZDB8|D5ZDB8_MYCTU Tax_Id=537210 SubName: Full=50S ribosomal... 96 2e-18 tr|D5Z0V6|D5Z0V6_MYCTU Tax_Id=537209 SubName: Full=50S ribosomal... 96 2e-18 tr|D5YP17|D5YP17_MYCTU Tax_Id=515616 SubName: Full=50S ribosomal... 96 2e-18 tr|D5YBJ5|D5YBJ5_MYCTU Tax_Id=520140 SubName: Full=50S ribosomal... 96 2e-18 tr|D5Y152|D5Y152_MYCTU Tax_Id=520141 SubName: Full=Ribosomal pro... 96 2e-18 tr|D5XR05|D5XR05_MYCTU Tax_Id=515617 SubName: Full=50S ribosomal... 96 2e-18 tr|A4KF42|A4KF42_MYCTU Tax_Id=395095 (rpmD)RecName: Full=50S rib... 96 2e-18 tr|A2VG30|A2VG30_MYCTU Tax_Id=348776 (rpmD)RecName: Full=50S rib... 96 2e-18 sp|O33001|RL30_MYCLE Tax_Id=1769 (rpmD)RecName: Full=50S ribosom... 95 3e-18 sp|B8ZSA1|RL30_MYCLB Tax_Id=561304 (rpmD)RecName: Full=50S ribos... 95 3e-18 tr|D5PCD2|D5PCD2_9MYCO Tax_Id=525368 (rpmD)SubName: Full=50S rib... 94 4e-18 sp|A0PM83|RL30_MYCUA Tax_Id=362242 (rpmD)RecName: Full=50S ribos... 94 7e-18 sp|Q73S91|RL30_MYCPA Tax_Id=1770 (rpmD)RecName: Full=50S ribosom... 94 7e-18 sp|B2HCT9|RL30_MYCMM Tax_Id=216594 (rpmD)RecName: Full=50S ribos... 94 7e-18 sp|A0QKZ4|RL30_MYCA1 Tax_Id=243243 (rpmD)RecName: Full=50S ribos... 94 7e-18 tr|D5PR77|D5PR77_COREQ Tax_Id=525370 (rpmD)SubName: Full=50S rib... 90 8e-17 sp|Q0S3F8|RL30_RHOSR Tax_Id=101510 (rpmD)RecName: Full=50S ribos... 90 1e-16 sp|C1B030|RL30_RHOOB Tax_Id=632772 (rpmD)RecName: Full=50S ribos... 90 1e-16 sp|C0ZW44|RL30_RHOE4 Tax_Id=234621 (rpmD)RecName: Full=50S ribos... 86 1e-15 tr|C3JH07|C3JH07_RHOER Tax_Id=596309 (rpmD)RecName: Full=50S rib... 86 1e-15 sp|Q5Z1Q4|RL30_NOCFA Tax_Id=37329 (rpmD)RecName: Full=50S riboso... 86 2e-15 tr|C6WM09|C6WM09_ACTMD Tax_Id=446462 (rpmD)RecName: Full=50S rib... 84 4e-15 tr|D5UWI4|D5UWI4_TSUPA Tax_Id=521096 SubName: Full=Ribosomal pro... 83 1e-14 tr|C7MTW5|C7MTW5_SACVD Tax_Id=471857 (rpmD)RecName: Full=50S rib... 82 2e-14 tr|D0L2G9|D0L2G9_GORB4 Tax_Id=526226 (rpmD)RecName: Full=50S rib... 80 8e-14 sp|A4FPK7|RL30_SACEN Tax_Id=405948 (rpmD)RecName: Full=50S ribos... 78 3e-13 tr|C7R0W2|C7R0W2_JONDD Tax_Id=471856 (rpmD)RecName: Full=50S rib... 78 3e-13 >sp|A0QSG7|RL30_MYCS2 Tax_Id=246196 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium smegmatis] Length = 61 Score = 120 bits (301), Expect = 5e-26 Identities = 61/61 (100%), Positives = 61/61 (100%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVG 60 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVG Sbjct: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVG 60 Query: 61 K 61 K Sbjct: 61 K 61 >sp|A4TED3|RL30_MYCGI Tax_Id=350054 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium gilvum] Length = 61 Score = 112 bits (281), Expect = 1e-23 Identities = 57/59 (96%), Positives = 58/59 (98%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MAELKITQVRSTIGARWKQRESLRTLGL+KIRQSVVREDNAQTRGLI TVHHLVEVEEV Sbjct: 1 MAELKITQVRSTIGARWKQRESLRTLGLRKIRQSVVREDNAQTRGLIKTVHHLVEVEEV 59 >sp|A1T4S4|RL30_MYCVP Tax_Id=350058 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium vanbaalenii] Length = 59 Score = 110 bits (275), Expect = 6e-23 Identities = 56/59 (94%), Positives = 57/59 (96%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MAELKITQVRSTIGARWKQRESLRTLGL+KIRQSVVREDNAQTRGLI TVHHLV VEEV Sbjct: 1 MAELKITQVRSTIGARWKQRESLRTLGLRKIRQSVVREDNAQTRGLIKTVHHLVTVEEV 59 >sp|A3PVE3|RL30_MYCSJ Tax_Id=164757 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium sp.] Length = 59 Score = 106 bits (265), Expect = 8e-22 Identities = 54/59 (91%), Positives = 55/59 (93%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MAELKITQVR TIGARW QRESLRTLGL+KIRQSVVREDNAQTRGLI TVHHLV VEEV Sbjct: 1 MAELKITQVRGTIGARWNQRESLRTLGLRKIRQSVVREDNAQTRGLIKTVHHLVVVEEV 59 >sp|Q1BD87|RL30_MYCSS Tax_Id=164756 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium sp.] Length = 61 Score = 104 bits (259), Expect = 4e-21 Identities = 53/59 (89%), Positives = 54/59 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MAELKI QVR TIGARW QRESLRTLGL+KIRQSVVREDNAQTRGLI TVHHLV VEEV Sbjct: 3 MAELKIIQVRGTIGARWNQRESLRTLGLRKIRQSVVREDNAQTRGLIKTVHHLVVVEEV 61 >sp|A1UBQ6|RL30_MYCSK Tax_Id=189918 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium sp.] Length = 61 Score = 104 bits (259), Expect = 4e-21 Identities = 53/59 (89%), Positives = 54/59 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MAELKI QVR TIGARW QRESLRTLGL+KIRQSVVREDNAQTRGLI TVHHLV VEEV Sbjct: 3 MAELKIIQVRGTIGARWNQRESLRTLGLRKIRQSVVREDNAQTRGLIKTVHHLVVVEEV 61 >sp|B1MGC4|RL30_MYCA9 Tax_Id=561007 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium abscessus] Length = 60 Score = 99.0 bits (245), Expect = 2e-19 Identities = 48/59 (81%), Positives = 55/59 (93%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MA++KITQVRSTIGARWKQRESL+TLGL+KIRQ+VVREDNAQTRGL+ V HLV VE+V Sbjct: 1 MADVKITQVRSTIGARWKQRESLKTLGLRKIRQTVVREDNAQTRGLLQVVRHLVTVEDV 59 >sp|P66181|RL30_MYCTU Tax_Id=1773 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium tuberculosis] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >sp|A5U0A8|RL30_MYCTA Tax_Id=419947 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium tuberculosis] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >sp|C1AL56|RL30_MYCBT Tax_Id=561275 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium bovis] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >sp|A1KGK3|RL30_MYCBP Tax_Id=410289 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium bovis] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >sp|P66182|RL30_MYCBO Tax_Id=1765 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium bovis] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >tr|C6DUN7|C6DUN7_MYCTK Tax_Id=478434 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium tuberculosis] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >tr|A5WK90|A5WK90_MYCTF Tax_Id=336982 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium tuberculosis] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >tr|D6G024|D6G024_MYCTU Tax_Id=478435 SubName: Full=50S ribosomal protein L30 rpmD;[Mycobacterium tuberculosis KZN 605] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >tr|D6FN19|D6FN19_MYCTU Tax_Id=611304 SubName: Full=50S ribosomal protein L30 rpmD;[Mycobacterium tuberculosis K85] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >tr|D6FEN3|D6FEN3_MYCTU Tax_Id=611303 SubName: Full=50S ribosomal protein L30 rpmD;[Mycobacterium tuberculosis CPHL_A] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >tr|D6F1Z1|D6F1Z1_MYCTU Tax_Id=611302 SubName: Full=LSU ribosomal protein L30;[Mycobacterium tuberculosis T46] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >tr|D5ZDB8|D5ZDB8_MYCTU Tax_Id=537210 SubName: Full=50S ribosomal protein L30 rpmD;[Mycobacterium tuberculosis T17] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >tr|D5Z0V6|D5Z0V6_MYCTU Tax_Id=537209 SubName: Full=50S ribosomal protein L30 rpmD;[Mycobacterium tuberculosis GM 1503] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >tr|D5YP17|D5YP17_MYCTU Tax_Id=515616 SubName: Full=50S ribosomal protein L30 rpmD;[Mycobacterium tuberculosis 02_1987] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >tr|D5YBJ5|D5YBJ5_MYCTU Tax_Id=520140 SubName: Full=50S ribosomal protein L30;[Mycobacterium tuberculosis EAS054] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >tr|D5Y152|D5Y152_MYCTU Tax_Id=520141 SubName: Full=Ribosomal protein L30;[Mycobacterium tuberculosis T85] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >tr|D5XR05|D5XR05_MYCTU Tax_Id=515617 SubName: Full=50S ribosomal protein L30 rpmD;[Mycobacterium tuberculosis T92] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >tr|A4KF42|A4KF42_MYCTU Tax_Id=395095 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium tuberculosis str. Haarlem] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >tr|A2VG30|A2VG30_MYCTU Tax_Id=348776 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium tuberculosis C] Length = 65 Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/57 (82%), Positives = 52/57 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDNA TRGLI V HLVEVE Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVE 57 >sp|O33001|RL30_MYCLE Tax_Id=1769 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium leprae] Length = 71 Score = 94.7 bits (234), Expect = 3e-18 Identities = 47/57 (82%), Positives = 50/57 (87%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 MA LKITQVRSTIG RWKQRESLRTLGL++IR SV+REDN QTRGLI V HLVEVE Sbjct: 1 MASLKITQVRSTIGVRWKQRESLRTLGLRRIRHSVIREDNLQTRGLIAVVRHLVEVE 57 >sp|B8ZSA1|RL30_MYCLB Tax_Id=561304 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium leprae] Length = 71 Score = 94.7 bits (234), Expect = 3e-18 Identities = 47/57 (82%), Positives = 50/57 (87%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 MA LKITQVRSTIG RWKQRESLRTLGL++IR SV+REDN QTRGLI V HLVEVE Sbjct: 1 MASLKITQVRSTIGVRWKQRESLRTLGLRRIRHSVIREDNLQTRGLIAVVRHLVEVE 57 >tr|D5PCD2|D5PCD2_9MYCO Tax_Id=525368 (rpmD)SubName: Full=50S ribosomal protein L30;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 60 Score = 94.4 bits (233), Expect = 4e-18 Identities = 46/58 (79%), Positives = 53/58 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEE 58 M++LKITQVRSTIGARWKQRE+LRTLGL++IR SV+REDN QTRGLI V+HLV VEE Sbjct: 1 MSQLKITQVRSTIGARWKQRETLRTLGLRRIRHSVIREDNPQTRGLIAVVNHLVVVEE 58 >sp|A0PM83|RL30_MYCUA Tax_Id=362242 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium ulcerans] Length = 72 Score = 93.6 bits (231), Expect = 7e-18 Identities = 46/55 (83%), Positives = 51/55 (92%) Query: 3 ELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 +LKITQVRSTIGARWKQRESLRTLGL++IR +VVR+DNAQTRGLI V HLVEVE Sbjct: 7 QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61 >sp|Q73S91|RL30_MYCPA Tax_Id=1770 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium paratuberculosis] Length = 71 Score = 93.6 bits (231), Expect = 7e-18 Identities = 46/56 (82%), Positives = 51/56 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEV 56 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDN QTRGLI V HLVEV Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNPQTRGLIAVVSHLVEV 56 >sp|B2HCT9|RL30_MYCMM Tax_Id=216594 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium marinum] Length = 72 Score = 93.6 bits (231), Expect = 7e-18 Identities = 46/55 (83%), Positives = 51/55 (92%) Query: 3 ELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57 +LKITQVRSTIGARWKQRESLRTLGL++IR +VVR+DNAQTRGLI V HLVEVE Sbjct: 7 QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61 >sp|A0QKZ4|RL30_MYCA1 Tax_Id=243243 (rpmD)RecName: Full=50S ribosomal protein L30;[Mycobacterium avium] Length = 71 Score = 93.6 bits (231), Expect = 7e-18 Identities = 46/56 (82%), Positives = 51/56 (91%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEV 56 M++LKITQVRSTIGARWKQRESLRTLGL++IR SV+REDN QTRGLI V HLVEV Sbjct: 1 MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNPQTRGLIAVVSHLVEV 56 >tr|D5PR77|D5PR77_COREQ Tax_Id=525370 (rpmD)SubName: Full=50S ribosomal protein L30;[Rhodococcus equi ATCC 33707] Length = 59 Score = 90.1 bits (222), Expect = 8e-17 Identities = 45/59 (76%), Positives = 51/59 (86%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MA+LK+TQV+STIG + QR+S+RTLGLK IRQSVVREDNAQ RGLIN V HLV VEEV Sbjct: 1 MAQLKVTQVKSTIGTKQNQRDSMRTLGLKGIRQSVVREDNAQNRGLINVVRHLVTVEEV 59 >sp|Q0S3F8|RL30_RHOSR Tax_Id=101510 (rpmD)RecName: Full=50S ribosomal protein L30;[Rhodococcus sp.] Length = 59 Score = 89.7 bits (221), Expect = 1e-16 Identities = 45/59 (76%), Positives = 50/59 (84%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MAELK+TQ++STIG + QR SLRTLGLK IRQ+VVREDNAQ RGLIN V HLV VEEV Sbjct: 1 MAELKVTQIKSTIGTKQNQRNSLRTLGLKGIRQTVVREDNAQNRGLINVVRHLVTVEEV 59 >sp|C1B030|RL30_RHOOB Tax_Id=632772 (rpmD)RecName: Full=50S ribosomal protein L30;[Rhodococcus opacus] Length = 59 Score = 89.7 bits (221), Expect = 1e-16 Identities = 45/59 (76%), Positives = 50/59 (84%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MAELK+TQ++STIG + QR SLRTLGLK IRQ+VVREDNAQ RGLIN V HLV VEEV Sbjct: 1 MAELKVTQIKSTIGTKQNQRNSLRTLGLKGIRQTVVREDNAQNRGLINVVRHLVTVEEV 59 >sp|C0ZW44|RL30_RHOE4 Tax_Id=234621 (rpmD)RecName: Full=50S ribosomal protein L30;[Rhodococcus erythropolis] Length = 59 Score = 85.9 bits (211), Expect = 1e-15 Identities = 42/59 (71%), Positives = 50/59 (84%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MA+LK+TQ++S IG + Q++SLRTLGLK IRQ+VVREDNAQ RGLIN V HLV VEEV Sbjct: 1 MADLKVTQIKSIIGTKQNQKDSLRTLGLKGIRQTVVREDNAQNRGLINVVRHLVTVEEV 59 >tr|C3JH07|C3JH07_RHOER Tax_Id=596309 (rpmD)RecName: Full=50S ribosomal protein L30;[Rhodococcus erythropolis SK121] Length = 59 Score = 85.9 bits (211), Expect = 1e-15 Identities = 42/59 (71%), Positives = 50/59 (84%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MA+LK+TQ++S IG + Q++SLRTLGLK IRQ+VVREDNAQ RGLIN V HLV VEEV Sbjct: 1 MADLKVTQIKSIIGTKQNQKDSLRTLGLKGIRQTVVREDNAQNRGLINVVRHLVTVEEV 59 >sp|Q5Z1Q4|RL30_NOCFA Tax_Id=37329 (rpmD)RecName: Full=50S ribosomal protein L30;[Nocardia farcinica] Length = 59 Score = 85.5 bits (210), Expect = 2e-15 Identities = 42/59 (71%), Positives = 51/59 (86%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MA+LK+TQ++S+IGA+ QR+SLRTLGL+ IR+SVVREDN Q RGLIN V HLV VEEV Sbjct: 1 MADLKVTQIKSSIGAKKNQRDSLRTLGLRGIRKSVVREDNPQNRGLINVVRHLVTVEEV 59 >tr|C6WM09|C6WM09_ACTMD Tax_Id=446462 (rpmD)RecName: Full=50S ribosomal protein L30;[Actinosynnema mirum] Length = 61 Score = 84.3 bits (207), Expect = 4e-15 Identities = 42/59 (71%), Positives = 49/59 (83%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MA+LK+TQV+STIG + RES+RTLGL+KIRQSVVRED Q RGLI+ V HLV VEEV Sbjct: 1 MAQLKVTQVKSTIGTKHNHRESMRTLGLRKIRQSVVREDTPQVRGLIHAVRHLVVVEEV 59 >tr|D5UWI4|D5UWI4_TSUPA Tax_Id=521096 SubName: Full=Ribosomal protein L30;[Tsukamurella paurometabola DSM 20162] Length = 59 Score = 83.2 bits (204), Expect = 1e-14 Identities = 43/59 (72%), Positives = 47/59 (79%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MA+ KITQVR TIG + QR+SLRTLGLK IR+SVVRED Q RGLI V HLVEVEEV Sbjct: 1 MAQFKITQVRGTIGTKQNQRDSLRTLGLKGIRKSVVREDTPQNRGLIQVVSHLVEVEEV 59 >tr|C7MTW5|C7MTW5_SACVD Tax_Id=471857 (rpmD)RecName: Full=50S ribosomal protein L30;[Saccharomonospora viridis] Length = 60 Score = 82.0 bits (201), Expect = 2e-14 Identities = 42/59 (71%), Positives = 47/59 (79%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MA+LKITQ RSTIG + R SLRTLGL+KIRQSVVRED Q RGL++ V HLV VEEV Sbjct: 1 MAQLKITQTRSTIGTKQAHRASLRTLGLRKIRQSVVREDTPQVRGLLHAVRHLVTVEEV 59 >tr|D0L2G9|D0L2G9_GORB4 Tax_Id=526226 (rpmD)RecName: Full=50S ribosomal protein L30;[Gordonia bronchialis] Length = 60 Score = 80.1 bits (196), Expect = 8e-14 Identities = 42/59 (71%), Positives = 46/59 (77%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MAELKITQV+ TIG + QR+SLRTLGLK IR+SV RED RGLIN V HLV VEEV Sbjct: 1 MAELKITQVKGTIGTKKNQRDSLRTLGLKGIRKSVTREDTPINRGLINVVRHLVTVEEV 59 >sp|A4FPK7|RL30_SACEN Tax_Id=405948 (rpmD)RecName: Full=50S ribosomal protein L30;[Saccharopolyspora erythraea] Length = 60 Score = 78.2 bits (191), Expect = 3e-13 Identities = 37/59 (62%), Positives = 46/59 (77%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 M +LKITQ + +GA+ Q++S+RTLGL+KIRQSVVR D RGL+N VHHLV VEEV Sbjct: 1 MGQLKITQHKGLVGAKQNQKDSMRTLGLRKIRQSVVRPDTPDVRGLVNVVHHLVTVEEV 59 >tr|C7R0W2|C7R0W2_JONDD Tax_Id=471856 (rpmD)RecName: Full=50S ribosomal protein L30;[Jonesia denitrificans] Length = 60 Score = 78.2 bits (191), Expect = 3e-13 Identities = 40/59 (67%), Positives = 46/59 (77%) Query: 1 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEV 59 MA LK+TQV+S IG + QR++LRTLGLKKI QS VRED + RGLI TV HLV VEEV Sbjct: 1 MANLKVTQVKSAIGGKQNQRDTLRTLGLKKIGQSTVREDRPEVRGLIATVAHLVTVEEV 59 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.316 0.130 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 393,688,885 Number of extensions: 9633949 Number of successful extensions: 24979 Number of sequences better than 10.0: 1801 Number of HSP's gapped: 25033 Number of HSP's successfully gapped: 1801 Length of query: 61 Length of database: 4,236,830,644 Length adjustment: 33 Effective length of query: 28 Effective length of database: 3,824,071,132 Effective search space: 107073991696 Effective search space used: 107073991696 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 75 (33.5 bits)