BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_1486 (180 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0QSI0|A0QSI0_MYCS2 Tax_Id=246196 SubName: Full=RNA polymeras... 360 4e-98 tr|A4TED5|A4TED5_MYCGI Tax_Id=350054 RecName: Full=RNA polymeras... 272 1e-71 tr|A1T4T4|A1T4T4_MYCVP Tax_Id=350058 RecName: Full=RNA polymeras... 266 1e-69 tr|A3PVF7|A3PVF7_MYCSJ Tax_Id=164757 SubName: Full=RNA polymeras... 254 3e-66 tr|Q1BD71|Q1BD71_MYCSS Tax_Id=164756 SubName: Full=RNA polymeras... 253 5e-66 tr|A1UBS1|A1UBS1_MYCSK Tax_Id=189918 SubName: Full=RNA polymeras... 253 5e-66 tr|Q7D9D4|Q7D9D4_MYCTU Tax_Id=1773 (sigL)RecName: Full=RNA polym... 220 5e-56 tr|O53798|O53798_MYCBO Tax_Id=1765 (sigL)RecName: Full=RNA polym... 220 5e-56 tr|C6DUQ1|C6DUQ1_MYCTK Tax_Id=478434 RecName: Full=RNA polymeras... 220 5e-56 tr|C1AL69|C1AL69_MYCBT Tax_Id=561275 (sigL)RecName: Full=RNA pol... 220 5e-56 tr|A5WKA3|A5WKA3_MYCTF Tax_Id=336982 RecName: Full=RNA polymeras... 220 5e-56 tr|A5U0C1|A5U0C1_MYCTA Tax_Id=419947 (sigL)RecName: Full=RNA pol... 220 5e-56 tr|A1KGL6|A1KGL6_MYCBP Tax_Id=410289 (sigL)RecName: Full=RNA pol... 220 5e-56 tr|D6G0H4|D6G0H4_MYCTU Tax_Id=478435 SubName: Full=Alternative R... 220 5e-56 tr|D6FN32|D6FN32_MYCTU Tax_Id=611304 SubName: Full=Alternative R... 220 5e-56 tr|D6FEP6|D6FEP6_MYCTU Tax_Id=611303 SubName: Full=Alternative R... 220 5e-56 tr|D6F204|D6F204_MYCTU Tax_Id=611302 SubName: Full=Alternative R... 220 5e-56 tr|D5ZDD2|D5ZDD2_MYCTU Tax_Id=537210 SubName: Full=Alternative R... 220 5e-56 tr|D5Z0W9|D5Z0W9_MYCTU Tax_Id=537209 SubName: Full=Alternative R... 220 5e-56 tr|D5YP30|D5YP30_MYCTU Tax_Id=515616 SubName: Full=Alternative R... 220 5e-56 tr|D5YBK8|D5YBK8_MYCTU Tax_Id=520140 SubName: Full=RNA polymeras... 220 5e-56 tr|D5Y165|D5Y165_MYCTU Tax_Id=520141 SubName: Full=Alternative R... 220 5e-56 tr|D5XR19|D5XR19_MYCTU Tax_Id=515617 SubName: Full=Alternative R... 220 5e-56 tr|A4KF55|A4KF55_MYCTU Tax_Id=395095 RecName: Full=RNA polymeras... 220 5e-56 tr|A2VG40|A2VG40_MYCTU Tax_Id=348776 RecName: Full=RNA polymeras... 220 5e-56 tr|Q73S75|Q73S75_MYCPA Tax_Id=1770 (sigL)RecName: Full=RNA polym... 219 1e-55 tr|A0QKX8|A0QKX8_MYCA1 Tax_Id=243243 RecName: Full=RNA polymeras... 219 1e-55 tr|D5PCF0|D5PCF0_9MYCO Tax_Id=525368 (sigL)SubName: Full=DNA-dir... 218 2e-55 tr|B2HCV7|B2HCV7_MYCMM Tax_Id=216594 (sigL)RecName: Full=RNA pol... 211 3e-53 tr|A0PMA0|A0PMA0_MYCUA Tax_Id=362242 (sigL)RecName: Full=RNA pol... 207 6e-52 tr|C1AUM1|C1AUM1_RHOOB Tax_Id=632772 (sigL)RecName: Full=RNA pol... 190 7e-47 tr|Q0SHA1|Q0SHA1_RHOSR Tax_Id=101510 RecName: Full=RNA polymeras... 189 1e-46 tr|Q5YN77|Q5YN77_NOCFA Tax_Id=37329 RecName: Full=RNA polymerase... 181 3e-44 tr|D2PZV9|D2PZV9_KRIFD Tax_Id=479435 RecName: Full=RNA polymeras... 177 5e-43 tr|B1MAH3|B1MAH3_MYCA9 Tax_Id=561007 RecName: Full=RNA polymeras... 177 6e-43 tr|A0R2S2|A0R2S2_MYCS2 Tax_Id=246196 RecName: Full=RNA polymeras... 165 2e-39 tr|A1SHA4|A1SHA4_NOCSJ Tax_Id=196162 RecName: Full=RNA polymeras... 160 8e-38 tr|C5BVS0|C5BVS0_BEUC1 Tax_Id=471853 RecName: Full=RNA polymeras... 159 1e-37 tr|A6W8Z7|A6W8Z7_KINRD Tax_Id=266940 SubName: Full=RNA polymeras... 159 1e-37 tr|A5CMM6|A5CMM6_CLAM3 Tax_Id=443906 (sigL)SubName: Full=Putativ... 159 1e-37 tr|B0RF42|B0RF42_CLAMS Tax_Id=31964 SubName: Full=Putative RNA p... 159 1e-37 tr|C8XBM9|C8XBM9_NAKMY Tax_Id=479431 SubName: Full=RNA polymeras... 159 2e-37 tr|D5UDD6|D5UDD6_9CELL Tax_Id=446466 SubName: Full=RNA polymeras... 158 2e-37 tr|A3TIY0|A3TIY0_9MICO Tax_Id=313589 RecName: Full=RNA polymeras... 155 3e-36 tr|D1BRM2|D1BRM2_XYLCX Tax_Id=446471 SubName: Full=RNA polymeras... 154 4e-36 >tr|A0QSI0|A0QSI0_MYCS2 Tax_Id=246196 SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium smegmatis] Length = 180 Score = 360 bits (924), Expect = 4e-98 Identities = 180/180 (100%), Positives = 180/180 (100%) Query: 1 MEDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADG 60 MEDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADG Sbjct: 1 MEDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADG 60 Query: 61 IAGPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLG 120 IAGPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLG Sbjct: 61 IAGPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLG 120 Query: 121 TALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 TALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR Sbjct: 121 TALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 >tr|A4TED5|A4TED5_MYCGI Tax_Id=350054 RecName: Full=RNA polymerase sigma factor;[Mycobacterium gilvum] Length = 171 Score = 272 bits (696), Expect = 1e-71 Identities = 142/180 (78%), Positives = 153/180 (85%), Gaps = 9/180 (5%) Query: 1 MEDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADG 60 MED +AAMMR LYDEHA ALWRYALRLTGD AR+EDVVQETLLRAWRH P + Sbjct: 1 MEDADAAMMRVLYDEHAAALWRYALRLTGDRARSEDVVQETLLRAWRH-PGV-------- 51 Query: 61 IAGPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLG 120 IA DR RAWLFTVARNMIIDERRSARFR+ET VPDPE VA+ A+ D+ D LDR+LLG Sbjct: 52 IADVDRPARAWLFTVARNMIIDERRSARFRHETGVPDPEHVAEPASPDEADPTLDRILLG 111 Query: 121 TALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 TALRQLSD+HRAV+RRAYYQG TTGQIAA+LQIPEGTVKSRLHYAVRALKL LQEMGVTR Sbjct: 112 TALRQLSDEHRAVVRRAYYQGWTTGQIAADLQIPEGTVKSRLHYAVRALKLGLQEMGVTR 171 >tr|A1T4T4|A1T4T4_MYCVP Tax_Id=350058 RecName: Full=RNA polymerase sigma factor;[Mycobacterium vanbaalenii] Length = 171 Score = 266 bits (679), Expect = 1e-69 Identities = 139/180 (77%), Positives = 151/180 (83%), Gaps = 9/180 (5%) Query: 1 MEDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADG 60 M+DPEAAMMR LYDEHA ALWRYALRLTGD ARAEDVVQETLLRAWRH P++ Sbjct: 1 MDDPEAAMMRVLYDEHAAALWRYALRLTGDRARAEDVVQETLLRAWRH-PEVT------- 52 Query: 61 IAGPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLG 120 A DRS RAWLFTVARNMIIDERRSARF++E+ V D E V D A+ D+ DTALDR+LL Sbjct: 53 -ADVDRSARAWLFTVARNMIIDERRSARFKHESGVADTEYVPDSASPDEADTALDRILLS 111 Query: 121 TALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 TAL QLSD+HRAV+RRAYYQG TTGQIAA+L IPEGTVKSRLHYAVRALKL LQEMGVTR Sbjct: 112 TALSQLSDEHRAVVRRAYYQGWTTGQIAADLNIPEGTVKSRLHYAVRALKLGLQEMGVTR 171 >tr|A3PVF7|A3PVF7_MYCSJ Tax_Id=164757 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 166 Score = 254 bits (649), Expect = 3e-66 Identities = 129/180 (71%), Positives = 147/180 (81%), Gaps = 14/180 (7%) Query: 1 MEDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADG 60 M+DPEA MMR LYDEHA ALWRYAL+LTGD A AEDVVQETLLRAWRH+P+ Sbjct: 1 MDDPEATMMRVLYDEHADALWRYALQLTGDAATAEDVVQETLLRAWRHRPN--------- 51 Query: 61 IAGPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLG 120 S RAWLFTVARN++IDERRSAR+R E PD E VA + D+VD+ALDR+L+G Sbjct: 52 -----GSARAWLFTVARNLVIDERRSARYRREAGTPDVETVAQPSEPDKVDSALDRMLIG 106 Query: 121 TALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 +AL QLS+DHRAV+RRAYYQG TTGQIAAEL+IPEGTVKSRLHYAVRAL+L+LQEMGVTR Sbjct: 107 SALAQLSEDHRAVVRRAYYQGWTTGQIAAELEIPEGTVKSRLHYAVRALRLNLQEMGVTR 166 >tr|Q1BD71|Q1BD71_MYCSS Tax_Id=164756 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 166 Score = 253 bits (647), Expect = 5e-66 Identities = 128/180 (71%), Positives = 147/180 (81%), Gaps = 14/180 (7%) Query: 1 MEDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADG 60 M+DPEA MMR LYDEHA ALWRYAL+LTGD A AEDVVQETLLRAWRH+P+ Sbjct: 1 MDDPEATMMRVLYDEHADALWRYALKLTGDAATAEDVVQETLLRAWRHRPN--------- 51 Query: 61 IAGPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLG 120 S RAWLFTVARN++IDERRSAR+R E PD + VA + D+VD+ALDR+L+G Sbjct: 52 -----GSARAWLFTVARNLVIDERRSARYRREAGTPDVDTVAQPSEPDKVDSALDRMLIG 106 Query: 121 TALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 +AL QLS+DHRAV+RRAYYQG TTGQIAAEL+IPEGTVKSRLHYAVRAL+L+LQEMGVTR Sbjct: 107 SALAQLSEDHRAVVRRAYYQGWTTGQIAAELEIPEGTVKSRLHYAVRALRLNLQEMGVTR 166 >tr|A1UBS1|A1UBS1_MYCSK Tax_Id=189918 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 166 Score = 253 bits (647), Expect = 5e-66 Identities = 128/180 (71%), Positives = 147/180 (81%), Gaps = 14/180 (7%) Query: 1 MEDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADG 60 M+DPEA MMR LYDEHA ALWRYAL+LTGD A AEDVVQETLLRAWRH+P+ Sbjct: 1 MDDPEATMMRVLYDEHADALWRYALKLTGDAATAEDVVQETLLRAWRHRPN--------- 51 Query: 61 IAGPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLG 120 S RAWLFTVARN++IDERRSAR+R E PD + VA + D+VD+ALDR+L+G Sbjct: 52 -----GSARAWLFTVARNLVIDERRSARYRREAGTPDVDTVAQPSEPDKVDSALDRMLIG 106 Query: 121 TALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 +AL QLS+DHRAV+RRAYYQG TTGQIAAEL+IPEGTVKSRLHYAVRAL+L+LQEMGVTR Sbjct: 107 SALAQLSEDHRAVVRRAYYQGWTTGQIAAELEIPEGTVKSRLHYAVRALRLNLQEMGVTR 166 >tr|Q7D9D4|Q7D9D4_MYCTU Tax_Id=1773 (sigL)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|O53798|O53798_MYCBO Tax_Id=1765 (sigL)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|C6DUQ1|C6DUQ1_MYCTK Tax_Id=478434 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|C1AL69|C1AL69_MYCBT Tax_Id=561275 (sigL)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|A5WKA3|A5WKA3_MYCTF Tax_Id=336982 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|A5U0C1|A5U0C1_MYCTA Tax_Id=419947 (sigL)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|A1KGL6|A1KGL6_MYCBP Tax_Id=410289 (sigL)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|D6G0H4|D6G0H4_MYCTU Tax_Id=478435 SubName: Full=Alternative RNA polymerase sigma factor sigL;[Mycobacterium tuberculosis KZN 605] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|D6FN32|D6FN32_MYCTU Tax_Id=611304 SubName: Full=Alternative RNA polymerase sigma factor sigL;[Mycobacterium tuberculosis K85] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|D6FEP6|D6FEP6_MYCTU Tax_Id=611303 SubName: Full=Alternative RNA polymerase sigma factor sigL;[Mycobacterium tuberculosis CPHL_A] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|D6F204|D6F204_MYCTU Tax_Id=611302 SubName: Full=Alternative RNA polymerase sigma factor sigL;[Mycobacterium tuberculosis T46] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|D5ZDD2|D5ZDD2_MYCTU Tax_Id=537210 SubName: Full=Alternative RNA polymerase sigma factor sigL;[Mycobacterium tuberculosis T17] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|D5Z0W9|D5Z0W9_MYCTU Tax_Id=537209 SubName: Full=Alternative RNA polymerase sigma factor sigL;[Mycobacterium tuberculosis GM 1503] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|D5YP30|D5YP30_MYCTU Tax_Id=515616 SubName: Full=Alternative RNA polymerase sigma factor sigL;[Mycobacterium tuberculosis 02_1987] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|D5YBK8|D5YBK8_MYCTU Tax_Id=520140 SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium tuberculosis EAS054] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|D5Y165|D5Y165_MYCTU Tax_Id=520141 SubName: Full=Alternative RNA polymerase sigma factor sigL;[Mycobacterium tuberculosis T85] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|D5XR19|D5XR19_MYCTU Tax_Id=515617 SubName: Full=Alternative RNA polymerase sigma factor sigL;[Mycobacterium tuberculosis T92] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|A4KF55|A4KF55_MYCTU Tax_Id=395095 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis str. Haarlem] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|A2VG40|A2VG40_MYCTU Tax_Id=348776 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis C] Length = 177 Score = 220 bits (561), Expect = 5e-56 Identities = 117/176 (66%), Positives = 136/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+MRALYDEHA LWRYALRLTGD A+AEDVVQETLLRAW+H P++ I Sbjct: 11 EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 R RAWLFTVARNMIIDERRSARFRN D + +T D+V+ ALDRLL+ AL Sbjct: 62 ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|Q73S75|Q73S75_MYCPA Tax_Id=1770 (sigL)RecName: Full=RNA polymerase sigma factor;[Mycobacterium paratuberculosis] Length = 181 Score = 219 bits (558), Expect = 1e-55 Identities = 114/176 (64%), Positives = 137/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+M+ALYDEHA LWRYALRLTGD +++EDVVQETLLRAW+H P++ I Sbjct: 15 EAALMKALYDEHAAVLWRYALRLTGDASQSEDVVQETLLRAWQH-PEV--------IGDT 65 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 +RS RAWLFTVARNMIID+RRSARFRN D + +T D+V+ ALDRLL+ A+ Sbjct: 66 ERSARAWLFTVARNMIIDDRRSARFRNVVGSTDTAGAPEQSTPDEVNAALDRLLIADAMA 125 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI R+YY+G TT QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 126 QLSAEHRAVIERSYYRGWTTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 181 >tr|A0QKX8|A0QKX8_MYCA1 Tax_Id=243243 RecName: Full=RNA polymerase sigma factor;[Mycobacterium avium] Length = 178 Score = 219 bits (558), Expect = 1e-55 Identities = 114/176 (64%), Positives = 137/176 (77%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+M+ALYDEHA LWRYALRLTGD +++EDVVQETLLRAW+H P++ I Sbjct: 12 EAALMKALYDEHAAVLWRYALRLTGDASQSEDVVQETLLRAWQH-PEV--------IGDT 62 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 +RS RAWLFTVARNMIID+RRSARFRN D + +T D+V+ ALDRLL+ A+ Sbjct: 63 ERSARAWLFTVARNMIIDDRRSARFRNVVGSTDTAGAPEQSTPDEVNAALDRLLIADAMA 122 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI R+YY+G TT QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 123 QLSAEHRAVIERSYYRGWTTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 178 >tr|D5PCF0|D5PCF0_9MYCO Tax_Id=525368 (sigL)SubName: Full=DNA-directed RNA polymerase sigma subunit SigL;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 177 Score = 218 bits (556), Expect = 2e-55 Identities = 113/176 (64%), Positives = 138/176 (78%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+M+ALYDEHA LWRYALRLTGD +++EDVVQETLLRAW+H P++ + Sbjct: 11 EAALMKALYDEHAAVLWRYALRLTGDASQSEDVVQETLLRAWQH-PEV--------VGDT 61 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 +RS RAWLFTVARNMIID+RRSARFRN D + +T D+V+ ALD+LL+ A+ Sbjct: 62 ERSARAWLFTVARNMIIDDRRSARFRNVVGSTDEAGAPERSTPDEVNAALDKLLIADAMV 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI R+YY+G TT QIAA+L I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSAEHRAVIERSYYRGWTTAQIAADLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|B2HCV7|B2HCV7_MYCMM Tax_Id=216594 (sigL)RecName: Full=RNA polymerase sigma factor;[Mycobacterium marinum] Length = 177 Score = 211 bits (537), Expect = 3e-53 Identities = 109/176 (61%), Positives = 132/176 (75%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+M+ALYDEHA LWRYA+RLT D + A+D+VQETLLRAW+H + G Sbjct: 11 EAALMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERG-------- 62 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 RS RAWLFTVARNMIID+RRSAR+R D + + +T D+V ALDRLL+ AL Sbjct: 63 -RSARAWLFTVARNMIIDDRRSARYRYVVSSTDADGAPEQSTPDEVGAALDRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI R+YY+G TT QIA +L+I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|A0PMA0|A0PMA0_MYCUA Tax_Id=362242 (sigL)RecName: Full=RNA polymerase sigma factor;[Mycobacterium ulcerans] Length = 177 Score = 207 bits (526), Expect = 6e-52 Identities = 107/176 (60%), Positives = 130/176 (73%), Gaps = 9/176 (5%) Query: 5 EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP 64 EAA+M+ALYDEHA LWRY +RLT D + A+D+VQETLLRAW+H + G Sbjct: 11 EAALMQALYDEHAAVLWRYTMRLTSDASYADDIVQETLLRAWQHPEVIDERG-------- 62 Query: 65 DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR 124 RS RAWLFTVARNMIID+RRSAR+R D + + +T D+V AL RLL+ AL Sbjct: 63 -RSARAWLFTVARNMIIDDRRSARYRYVVSSTDADGAPEQSTPDEVGAALGRLLIADALA 121 Query: 125 QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 QLS +HRAVI R+YY+G TT QIA +L+I EGTVKSRLHYAVRAL+L+LQE+GVTR Sbjct: 122 QLSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177 >tr|C1AUM1|C1AUM1_RHOOB Tax_Id=632772 (sigL)RecName: Full=RNA polymerase sigma factor;[Rhodococcus opacus] Length = 168 Score = 190 bits (482), Expect = 7e-47 Identities = 101/180 (56%), Positives = 124/180 (68%), Gaps = 12/180 (6%) Query: 1 MEDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADG 60 M D + +M ALY+EHA A+WRYALRLTGD ARAED+VQE LLRAW+H L Sbjct: 1 MPDAQTELMHALYEEHAPAVWRYALRLTGDRARAEDIVQEVLLRAWKHPNVLDQS----- 55 Query: 61 IAGPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLG 120 + S RAWLFTVARN++ DE RSAR + E + + A D D ALD ++G Sbjct: 56 ----ESSARAWLFTVARNLVFDEHRSARSQREVGM---SSTPERAAPDGSDGALDAWMMG 108 Query: 121 TALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 AL +LS DHRAV+ YY+G++T QIA EL IPEGTVKSR+HY +RAL+L+LQEMGVTR Sbjct: 109 DALARLSTDHRAVLVLGYYRGMSTHQIADELGIPEGTVKSRMHYGLRALRLALQEMGVTR 168 >tr|Q0SHA1|Q0SHA1_RHOSR Tax_Id=101510 RecName: Full=RNA polymerase sigma factor;[Rhodococcus sp.] Length = 168 Score = 189 bits (480), Expect = 1e-46 Identities = 100/180 (55%), Positives = 124/180 (68%), Gaps = 12/180 (6%) Query: 1 MEDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADG 60 M D + +M ALY+EHA A+WRYALRLTGD ARAED+VQE LLRAW+H L Sbjct: 1 MPDAQTELMHALYEEHAPAVWRYALRLTGDRARAEDIVQEVLLRAWKHPNVLDQS----- 55 Query: 61 IAGPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLG 120 + S RAWLFTVARN++ DE RSAR + E + + A D D ALD ++G Sbjct: 56 ----ESSARAWLFTVARNLVFDEHRSARSQREIGM---SSTPERAAPDSSDGALDAWMMG 108 Query: 121 TALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 AL +LS DHRAV+ YY+G++T Q+A EL IPEGTVKSR+HY +RAL+L+LQEMGVTR Sbjct: 109 DALARLSPDHRAVLVLGYYRGMSTHQMADELGIPEGTVKSRMHYGLRALRLALQEMGVTR 168 >tr|Q5YN77|Q5YN77_NOCFA Tax_Id=37329 RecName: Full=RNA polymerase sigma factor;[Nocardia farcinica] Length = 169 Score = 181 bits (460), Expect = 3e-44 Identities = 106/181 (58%), Positives = 122/181 (67%), Gaps = 16/181 (8%) Query: 1 MEDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADG 60 M D +A +MR LY EHA ALWRY L L D RAED+VQETLLRAW+ L Sbjct: 1 MPDDQAELMRVLYREHAPALWRYTLGLVRDAGRAEDIVQETLLRAWQRPSVLDQS----- 55 Query: 61 IAGPDRSPRAWLFTVARNMIIDERRSARFRNE--TDVPDPEQVADHATSDQVDTALDRLL 118 S RAWLFTVARN+++D+ RSAR R E TD P PEQ A D+ D ALD L Sbjct: 56 ----TTSARAWLFTVARNLVVDDFRSARNRREFRTDNP-PEQ----AEPDRSDRALDSWL 106 Query: 119 LGTALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGV 178 + AL LS DHR VI RAYY+GL+T QIAAEL IP GTVKSR+HY +RAL+L+LQEMGV Sbjct: 107 VADALGGLSADHREVIVRAYYRGLSTNQIAAELDIPAGTVKSRMHYGMRALRLALQEMGV 166 Query: 179 T 179 T Sbjct: 167 T 167 >tr|D2PZV9|D2PZV9_KRIFD Tax_Id=479435 RecName: Full=RNA polymerase sigma factor;[Kribbella flavida] Length = 169 Score = 177 bits (449), Expect = 5e-43 Identities = 98/180 (54%), Positives = 122/180 (67%), Gaps = 12/180 (6%) Query: 1 MEDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADG 60 M D AA++R L+D HA +LWR+ +RLTGD AEDVVQETLLRAWR +P + T A Sbjct: 1 MADERAALLRELHDVHAPSLWRFVVRLTGDDRLAEDVVQETLLRAWR-RPQILTEDEAGA 59 Query: 61 IAGPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLG 120 RAWLFTVARN++ID+RRSAR E +++ + A++D + LD L+ Sbjct: 60 --------RAWLFTVARNLVIDDRRSARVNREFA---SDELPERASADHANAVLDAWLVA 108 Query: 121 TALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 +L QLSDDHR VI RAYY T IAAEL IP GTVKSR+HY +RALKL+LQE GVT+ Sbjct: 109 DSLAQLSDDHRQVIVRAYYGRRTVSDIAAELGIPPGTVKSRMHYGLRALKLALQEKGVTQ 168 >tr|B1MAH3|B1MAH3_MYCA9 Tax_Id=561007 RecName: Full=RNA polymerase sigma factor;[Mycobacterium abscessus] Length = 160 Score = 177 bits (448), Expect = 6e-43 Identities = 99/172 (57%), Positives = 117/172 (68%), Gaps = 12/172 (6%) Query: 9 MRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGPDRSP 68 MRA YDE+A L RY + LT D A AED+VQE LLRAWRH P L + + S Sbjct: 1 MRAFYDEYAGPLHRYVMHLTHDSALAEDIVQEVLLRAWRH-PTL--------VNQTEGSA 51 Query: 69 RAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALRQLSD 128 RAWLFTVA N++ D RS+RFR+E + + A+ DQVD LD L+ ALR LS Sbjct: 52 RAWLFTVAHNLVRDNARSSRFRSEIATAE---TPEFASPDQVDATLDAWLVAEALRTLST 108 Query: 129 DHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 DHRAVI RAYY+G + I+AEL +PEGTVKSRLHY VRAL+LSLQEMGVTR Sbjct: 109 DHRAVILRAYYRGSSVADISAELGVPEGTVKSRLHYGVRALRLSLQEMGVTR 160 >tr|A0R2S2|A0R2S2_MYCS2 Tax_Id=246196 RecName: Full=RNA polymerase sigma factor;[Mycobacterium smegmatis] Length = 174 Score = 165 bits (417), Expect = 2e-39 Identities = 90/177 (50%), Positives = 116/177 (65%), Gaps = 11/177 (6%) Query: 1 MEDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADG 60 +E P M+ LY H L RYA RLT + R+ED+VQET LRAWRH L+ G Sbjct: 4 VEQPTERMLE-LYANHVDPLRRYAFRLTSNQTRSEDIVQETFLRAWRH---LQNNDG--- 56 Query: 61 IAGPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLG 120 D R+WLFTVARN++ID RSAR R E PD +V D +D+V+ ALDR+L+ Sbjct: 57 ----DLPLRSWLFTVARNIVIDGSRSARVRYEVSSPDTPEVPDRMGADEVNAALDRILVA 112 Query: 121 TALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMG 177 A+ QL + HRAV+ R++Y G TTG+IA +L I EGTVKSRLHY+++ L+L L EMG Sbjct: 113 EAMAQLPESHRAVLSRSFYLGWTTGRIAEDLGIAEGTVKSRLHYSLKRLRLILAEMG 169 >tr|A1SHA4|A1SHA4_NOCSJ Tax_Id=196162 RecName: Full=RNA polymerase sigma factor;[Nocardioides sp.] Length = 174 Score = 160 bits (404), Expect = 8e-38 Identities = 91/173 (52%), Positives = 116/173 (67%), Gaps = 12/173 (6%) Query: 7 AMMRALYDEHATALWRYALRLTG-DPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGPD 65 A+M+ L+DEHA ALW Y LRLTG D ARAEDVVQETLLRAWR+ P L G Sbjct: 11 ALMQQLHDEHAAALWGYCLRLTGQDRARAEDVVQETLLRAWRNFPALDEAHG-------- 62 Query: 66 RSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALRQ 125 S RAWLF VARN++IDE R+ R+++E V D A SD+ D L ++G AL + Sbjct: 63 -SVRAWLFRVARNIVIDEWRTKRWQSEIAVADVPDGAGE--SDRTDQLLLSWVVGDALTR 119 Query: 126 LSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGV 178 LS +HRAV+ YY+G + + + L +PEGTVKSR HYA+RAL+L+L+E GV Sbjct: 120 LSAEHRAVLLECYYRGQSVAEASRRLGVPEGTVKSRTHYALRALRLALEESGV 172 >tr|C5BVS0|C5BVS0_BEUC1 Tax_Id=471853 RecName: Full=RNA polymerase sigma factor;[Beutenbergia cavernae] Length = 167 Score = 159 bits (403), Expect = 1e-37 Identities = 91/178 (51%), Positives = 118/178 (66%), Gaps = 12/178 (6%) Query: 3 DPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIA 62 D EA +MRAL+D HA AL RY + L + +DVVQETL+RAWR +P++ + Sbjct: 2 DDEALLMRALHDAHAPALRRYVVALGVEGGGVDDVVQETLVRAWR-KPEV--------LD 52 Query: 63 GPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTA 122 RS RAWLFTVAR+++IDE R+AR R+E DP VA D+ D LD+ L+ A Sbjct: 53 ETQRSARAWLFTVARHLVIDEHRTARRRHERPAWDPPDVA---VDDESDHLLDQWLVADA 109 Query: 123 LRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 L L+ +HR+V+ RAYY G + QIA+ IP GTVKSRLHY +RAL+L+LQE GVTR Sbjct: 110 LAALTPEHRSVVVRAYYGGWSVAQIASAAGIPAGTVKSRLHYGLRALRLALQEKGVTR 167 >tr|A6W8Z7|A6W8Z7_KINRD Tax_Id=266940 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Kineococcus radiotolerans] Length = 168 Score = 159 bits (403), Expect = 1e-37 Identities = 88/180 (48%), Positives = 114/180 (63%), Gaps = 12/180 (6%) Query: 1 MEDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADG 60 M + + ++RAL+DEHA ALW Y + LTGD A A DVVQETLLRAWRH L G Sbjct: 1 MTEADEELVRALHDEHAGALWSYVVSLTGDRASAHDVVQETLLRAWRHPESLDPARG--- 57 Query: 61 IAGPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLG 120 S R WLFTVAR ++ID+ RSAR R E+ D V D D+ + L + ++ Sbjct: 58 ------STRGWLFTVARRLVIDDWRSARNRRESVHAD---VPDRVVVDESEQVLQQWVVT 108 Query: 121 TALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 AL +LS +HRAV+ Y++G + + A L IPEGTVKSR HYA+ L+L+LQEMGV+R Sbjct: 109 QALTRLSPEHRAVLGECYFRGRSVAEAARTLAIPEGTVKSRTHYALMNLRLALQEMGVSR 168 >tr|A5CMM6|A5CMM6_CLAM3 Tax_Id=443906 (sigL)SubName: Full=Putative RNA polymerase ECF-subfamily sigma factor;[Clavibacter michiganensis subsp. michiganensis] Length = 168 Score = 159 bits (403), Expect = 1e-37 Identities = 95/182 (52%), Positives = 113/182 (62%), Gaps = 16/182 (8%) Query: 1 MEDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADG 60 M A MRAL+D HA AL RYALRLTGDPA AEDVVQE LLRAWR L Sbjct: 1 MTTESTARMRALHDAHAPALQRYALRLTGDPALAEDVVQEALLRAWRSPAIL-------- 52 Query: 61 IAGPDRSPRAWLFTVARNMIIDERRSARFRNET--DVPDPEQVADHATSDQVDTALDRLL 118 A D S R WLFTV RN++ID+RRSA ET DV + VAD + D +DRLL Sbjct: 53 -AEDDESARRWLFTVVRNLVIDDRRSAWRGRETPTDVLPEDPVADAS-----DAIIDRLL 106 Query: 119 LGTALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGV 178 + AL LS +HR + Y+ G T + A +P GT+KSRLHYA++AL+L+LQE GV Sbjct: 107 VAEALASLSAEHRRAVVSCYHLGRTVVETAEREGVPPGTIKSRLHYALKALRLALQERGV 166 Query: 179 TR 180 TR Sbjct: 167 TR 168 >tr|B0RF42|B0RF42_CLAMS Tax_Id=31964 SubName: Full=Putative RNA polymerase sigma factor;[Clavibacter michiganensis subsp. sepedonicus] Length = 168 Score = 159 bits (402), Expect = 1e-37 Identities = 90/180 (50%), Positives = 111/180 (61%), Gaps = 12/180 (6%) Query: 1 MEDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADG 60 M A MRAL+D HA AL RYALRLTGDPA AEDVVQE LLRAWR L Sbjct: 1 MTTESTARMRALHDAHAPALQRYALRLTGDPALAEDVVQEALLRAWRSPAIL-------- 52 Query: 61 IAGPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLG 120 A D S R WLFTV RN++ID+RRSA ET + + + +D D +DRLL+ Sbjct: 53 -AEDDESARRWLFTVVRNLVIDDRRSAWRGRETPT---DTLPEDPVADASDAIIDRLLVA 108 Query: 121 TALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 AL LS +HR + Y+ G + + A +P GT+KSRLHYA++AL+L+LQE GVTR Sbjct: 109 EALASLSAEHRRAVVSCYHLGRSVAETAEREGVPPGTIKSRLHYALKALRLALQERGVTR 168 >tr|C8XBM9|C8XBM9_NAKMY Tax_Id=479431 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Nakamurella multipartita] Length = 193 Score = 159 bits (401), Expect = 2e-37 Identities = 89/177 (50%), Positives = 113/177 (63%), Gaps = 13/177 (7%) Query: 5 EAAMMRALYDEHATALWRYALRLTG-DPARAEDVVQETLLRAWRHQPDLRTGGGADGIAG 63 +AA+++AL+DEHATALW + L LTG D +RAEDVVQETL RAWR L A Sbjct: 29 DAALLKALHDEHATALWHFVLHLTGGDRSRAEDVVQETLFRAWRRPAVL---------AQ 79 Query: 64 PDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTAL 123 S R WLFTVARN+++D R+ R R T E V + D D AL +++ A+ Sbjct: 80 QQSSARGWLFTVARNIVVDGWRADRRRPTTST---ESVPEPLQPDATDRALQAMVVAEAM 136 Query: 124 RQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180 ++LS DH AV+ YY+G T Q AA L IP GTVKSRLHYA+ AL+L L+EMGV + Sbjct: 137 QRLSHDHGAVLLECYYRGCTAAQAAARLDIPIGTVKSRLHYALHALRLVLEEMGVVK 193 >tr|D5UDD6|D5UDD6_9CELL Tax_Id=446466 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Cellulomonas flavigena DSM 20109] Length = 166 Score = 158 bits (400), Expect = 2e-37 Identities = 92/177 (51%), Positives = 115/177 (64%), Gaps = 13/177 (7%) Query: 3 DPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIA 62 D A++RA + HA L RY +RLT DPARA DVVQETLLRAWRH P++ T Sbjct: 2 DDADALLRATHATHAAVLHRYVVRLT-DPARAPDVVQETLLRAWRH-PEVLTR------- 52 Query: 63 GPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTA 122 P+ S RAWLFTVARN+++D+ RSA R+ET P D D LDR L+ A Sbjct: 53 -PEPSVRAWLFTVARNLVVDDARSAHRRHETPSDAPP---DTPGDDGTQAVLDRWLVADA 108 Query: 123 LRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVT 179 L L+ DHRA + AYY+ + ++AAEL + GTVKSRLHYA+RAL+L+LQE GVT Sbjct: 109 LAALTPDHRADVVGAYYRRRSVAELAAELDVAPGTVKSRLHYALRALRLALQERGVT 165 >tr|A3TIY0|A3TIY0_9MICO Tax_Id=313589 RecName: Full=RNA polymerase sigma factor;[Janibacter sp. HTCC2649] Length = 162 Score = 155 bits (391), Expect = 3e-36 Identities = 90/171 (52%), Positives = 110/171 (64%), Gaps = 12/171 (7%) Query: 9 MRALYDEHATALWRYALRLTG-DPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGPDRS 67 M L+DEHA ALW Y L LTG D ARAEDVVQETLLRAWR+ L G S Sbjct: 1 MTQLHDEHAAALWGYCLSLTGRDHARAEDVVQETLLRAWRNHDRLEESRG---------S 51 Query: 68 PRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALRQLS 127 RAWLFTVARN++IDE R+ R ++E V + +V + DQ D L ++ AL LS Sbjct: 52 VRAWLFTVARNIVIDEWRTKRTQSELSVAEVPEVRE--PGDQTDQMLLSWVVADALLGLS 109 Query: 128 DDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGV 178 DHRAV+ Y++G + Q A L IP+GTVKSR HYA++AL+L LQEMGV Sbjct: 110 PDHRAVLVECYFKGASVAQAAHRLGIPDGTVKSRTHYALQALRLRLQEMGV 160 >tr|D1BRM2|D1BRM2_XYLCX Tax_Id=446471 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Xylanimonas cellulosilytica] Length = 170 Score = 154 bits (389), Expect = 4e-36 Identities = 85/178 (47%), Positives = 112/178 (62%), Gaps = 12/178 (6%) Query: 2 EDPEAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGI 61 E P+ A++ A++ HA AL RY LT D + DVVQETLLRAWRH L Sbjct: 4 EHPDDAVLAAVHGTHAAALHRYVRHLTSDEEQTRDVVQETLLRAWRHPEVLER------- 56 Query: 62 AGPDRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGT 121 P+ S RAWLFTVA+++++D+RRSAR +E V + D+ LD L+ Sbjct: 57 --PEDSVRAWLFTVAKHLVVDQRRSARHAHERTTA---VVPERPEPDRTQQVLDAWLVAD 111 Query: 122 ALRQLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVT 179 AL LS +HRAV+ AYY G + ++A +L+IP GTVKSR+HYA+RAL+LSLQE GVT Sbjct: 112 ALAGLSAEHRAVVVGAYYGGRSVAELADDLEIPPGTVKSRMHYALRALRLSLQEKGVT 169 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.320 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 1,466,291,586 Number of extensions: 57944284 Number of successful extensions: 160968 Number of sequences better than 10.0: 9977 Number of HSP's gapped: 155630 Number of HSP's successfully gapped: 9978 Length of query: 180 Length of database: 4,236,830,644 Length adjustment: 129 Effective length of query: 51 Effective length of database: 2,623,316,188 Effective search space: 133789125588 Effective search space used: 133789125588 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 76 (33.9 bits)