BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_1527 (291 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0QSM0|A0QSM0_MYCS2 Tax_Id=246196 (truA)RecName: Full=tRNA ps... 563 e-159 tr|Q1BD06|Q1BD06_MYCSS Tax_Id=164756 (truA)RecName: Full=tRNA ps... 420 e-116 tr|A3PVM0|A3PVM0_MYCSJ Tax_Id=164757 (truA)RecName: Full=tRNA ps... 420 e-116 tr|A1UBY7|A1UBY7_MYCSK Tax_Id=189918 (truA)RecName: Full=tRNA ps... 420 e-116 tr|A1T522|A1T522_MYCVP Tax_Id=350058 SubName: Full=tRNA pseudour... 413 e-113 tr|A4TEJ1|A4TEJ1_MYCGI Tax_Id=350054 SubName: Full=tRNA pseudour... 412 e-113 tr|D5PCI3|D5PCI3_9MYCO Tax_Id=525368 (truA)SubName: Full=tRNA ps... 395 e-108 sp|P65846|TRUA_MYCTU Tax_Id=1773 (truA)RecName: Full=tRNA pseudo... 392 e-107 sp|P65847|TRUA_MYCBO Tax_Id=1765 (truA)RecName: Full=tRNA pseudo... 392 e-107 tr|C6DLX6|C6DLX6_MYCTK Tax_Id=478434 SubName: Full=tRNA pseudour... 392 e-107 tr|A5WT28|A5WT28_MYCTF Tax_Id=336982 SubName: Full=tRNA pseudour... 392 e-107 tr|D6G421|D6G421_MYCTU Tax_Id=478435 SubName: Full=tRNA pseudour... 392 e-107 tr|D5YX72|D5YX72_MYCTU Tax_Id=515616 SubName: Full=tRNA pseudour... 392 e-107 tr|A4KLX9|A4KLX9_MYCTU Tax_Id=395095 SubName: Full=TRNA pseudour... 392 e-107 tr|A2VPN3|A2VPN3_MYCTU Tax_Id=348776 SubName: Full=TRNA pseudour... 392 e-107 sp|Q9X796|TRUA_MYCLE Tax_Id=1769 (truA)RecName: Full=tRNA pseudo... 366 2e-99 tr|A0PMB9|A0PMB9_MYCUA Tax_Id=362242 (truA)SubName: Full=Pseudou... 357 7e-97 tr|C1AHR3|C1AHR3_MYCBT Tax_Id=561275 (truA)SubName: Full=tRNA ps... 352 3e-95 tr|A5U8D1|A5U8D1_MYCTA Tax_Id=419947 (truA)SubName: Full=tRNA ps... 352 3e-95 tr|A1KPE1|A1KPE1_MYCBP Tax_Id=410289 (truA)SubName: Full=Probabl... 352 3e-95 tr|D6FSF3|D6FSF3_MYCTU Tax_Id=611304 SubName: Full=tRNA pseudour... 352 3e-95 tr|D6FM27|D6FM27_MYCTU Tax_Id=611303 SubName: Full=tRNA pseudour... 352 3e-95 tr|D6FAC3|D6FAC3_MYCTU Tax_Id=611302 SubName: Full=tRNA pseudour... 352 3e-95 tr|D5ZLZ1|D5ZLZ1_MYCTU Tax_Id=537210 SubName: Full=tRNA pseudour... 352 3e-95 tr|D5Z8U4|D5Z8U4_MYCTU Tax_Id=537209 SubName: Full=tRNA pseudour... 352 3e-95 tr|D5YK83|D5YK83_MYCTU Tax_Id=520140 SubName: Full=tRNA pseudour... 352 3e-95 tr|D5Y960|D5Y960_MYCTU Tax_Id=520141 SubName: Full=tRNA pseudour... 352 3e-95 tr|D5XZF5|D5XZF5_MYCTU Tax_Id=515617 SubName: Full=tRNA pseudour... 352 3e-95 tr|B1MG97|B1MG97_MYCA9 Tax_Id=561007 (truA)RecName: Full=tRNA ps... 348 3e-94 sp|Q73S41|TRUA_MYCPA Tax_Id=1770 (truA)RecName: Full=tRNA pseudo... 340 9e-92 tr|A0QKU3|A0QKU3_MYCA1 Tax_Id=243243 (truA)SubName: Full=tRNA ps... 339 2e-91 tr|B2HCX6|B2HCX6_MYCMM Tax_Id=216594 (truA)SubName: Full=Pseudou... 335 4e-90 tr|D5PR64|D5PR64_COREQ Tax_Id=525370 (truA)SubName: Full=tRNA ps... 321 8e-86 tr|B8ZSH4|B8ZSH4_MYCLB Tax_Id=561304 (truA)SubName: Full=Probabl... 315 4e-84 tr|D0L2F0|D0L2F0_GORB4 Tax_Id=526226 (truA)RecName: Full=tRNA ps... 305 3e-81 tr|Q0S3E5|Q0S3E5_RHOSR Tax_Id=101510 SubName: Full=Pseudouridyla... 303 1e-80 tr|C3JGZ4|C3JGZ4_RHOER Tax_Id=596309 (truA)SubName: Full=tRNA ps... 303 1e-80 tr|C1B043|C1B043_RHOOB Tax_Id=632772 (truA)SubName: Full=tRNA ps... 302 4e-80 tr|C0ZW56|C0ZW56_RHOE4 Tax_Id=234621 (truA)SubName: Full=tRNA ps... 302 4e-80 tr|D5UWG5|D5UWG5_TSUPA Tax_Id=521096 SubName: Full=tRNA pseudour... 297 9e-79 tr|D2SH72|D2SH72_GEOOG Tax_Id=526225 SubName: Full=tRNA pseudour... 292 3e-77 tr|C6WLZ4|C6WLZ4_ACTMD Tax_Id=446462 SubName: Full=tRNA-pseudour... 289 3e-76 tr|C6R9B4|C6R9B4_9CORY Tax_Id=553206 (truA)RecName: Full=tRNA ps... 287 9e-76 tr|C2BK37|C2BK37_9CORY Tax_Id=525264 (truA)RecName: Full=tRNA ps... 287 9e-76 sp|Q5Z1K7|TRUA_NOCFA Tax_Id=37329 (truA)RecName: Full=tRNA pseud... 283 1e-74 >tr|A0QSM0|A0QSM0_MYCS2 Tax_Id=246196 (truA)RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12;[Mycobacterium smegmatis] Length = 291 Score = 563 bits (1452), Expect = e-159 Identities = 279/291 (95%), Positives = 279/291 (95%) Query: 1 MPAIESGGGHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRT 60 MPAIESGGGHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEAL AGRT Sbjct: 1 MPAIESGGGHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALTTVFRTPVVTRVAGRT 60 Query: 61 DTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPA 120 DTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPA Sbjct: 61 DTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPA 120 Query: 121 GFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAF 180 GFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAF Sbjct: 121 GFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAF 180 Query: 181 CRYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTA 240 CRYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTA Sbjct: 181 CRYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTA 240 Query: 241 ELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRTIDQSRD 291 ELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRTIDQSRD Sbjct: 241 ELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRTIDQSRD 291 >tr|Q1BD06|Q1BD06_MYCSS Tax_Id=164756 (truA)RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12;[Mycobacterium sp.] Length = 299 Score = 420 bits (1080), Expect = e-116 Identities = 209/295 (70%), Positives = 230/295 (77%), Gaps = 9/295 (3%) Query: 2 PAIESGGGHV---------RLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXX 52 PAI++ GG V RLRLD++YDGTDFAGWA Q GQRTVAG+IDEAL Sbjct: 5 PAIDTDGGLVHLSSSRAVTRLRLDVSYDGTDFAGWAPQTGQRTVAGLIDEALTTVFRTPV 64 Query: 53 XXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRV 112 AGRTD GVHATGQVAHVDVP +ALPHAYPR RP + EF PLVRRL FLPADVR+ Sbjct: 65 TVRAAGRTDAGVHATGQVAHVDVPDDALPHAYPRSARPDEPEFLPLVRRLGRFLPADVRI 124 Query: 113 RDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELL 172 RDI+RAP GFDARFSALRRHY YRL TAPYG EP RFVTPW RPLDV+AMN A +L+ Sbjct: 125 RDIIRAPTGFDARFSALRRHYTYRLGTAPYGVEPQSARFVTPWPRPLDVEAMNDAGSQLV 184 Query: 173 GLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEG 232 GL DFAAFCR+R GATTIRDLQRLEW R+G + AYV+ADAFCW+MVRSLVGAL+ VGE Sbjct: 185 GLRDFAAFCRHREGATTIRDLQRLEWTRDGDLVTAYVSADAFCWSMVRSLVGALIAVGEH 244 Query: 233 RRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRTID 287 RR PEW A LL AT RSSEF AAP +GLTL VDYPPDDEL AR +VTRD+R ID Sbjct: 245 RREPEWCAGLLSATRRSSEFAAAPPQGLTLVGVDYPPDDELAARTLVTRDLRVID 299 >tr|A3PVM0|A3PVM0_MYCSJ Tax_Id=164757 (truA)RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12;[Mycobacterium sp.] Length = 299 Score = 420 bits (1080), Expect = e-116 Identities = 209/295 (70%), Positives = 230/295 (77%), Gaps = 9/295 (3%) Query: 2 PAIESGGGHV---------RLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXX 52 PAI++ GG V RLRLD++YDGTDFAGWA Q GQRTVAG+IDEAL Sbjct: 5 PAIDTDGGLVHLSSSRALTRLRLDVSYDGTDFAGWAPQTGQRTVAGLIDEALTTVFRTPV 64 Query: 53 XXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRV 112 AGRTD GVHATGQVAHVDVP +ALPHAYPR RP + EF PLVRRL FLPADVR+ Sbjct: 65 TVRAAGRTDAGVHATGQVAHVDVPDDALPHAYPRSARPDEPEFLPLVRRLGRFLPADVRI 124 Query: 113 RDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELL 172 RDI+RAP GFDARFSALRRHY YRL TAPYG EP RFVTPW RPLDV+AMN A +L+ Sbjct: 125 RDIIRAPTGFDARFSALRRHYTYRLGTAPYGVEPQSARFVTPWPRPLDVEAMNDAGSQLV 184 Query: 173 GLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEG 232 GL DFAAFCR+R GATTIRDLQRLEW R+G + AYV+ADAFCW+MVRSLVGAL+ VGE Sbjct: 185 GLRDFAAFCRHREGATTIRDLQRLEWTRDGDLVTAYVSADAFCWSMVRSLVGALIAVGEH 244 Query: 233 RRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRTID 287 RR PEW A LL AT RSSEF AAP +GLTL VDYPPDDEL AR +VTRD+R ID Sbjct: 245 RREPEWCAGLLSATRRSSEFAAAPPQGLTLVGVDYPPDDELAARTLVTRDLRVID 299 >tr|A1UBY7|A1UBY7_MYCSK Tax_Id=189918 (truA)RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12;[Mycobacterium sp.] Length = 299 Score = 420 bits (1080), Expect = e-116 Identities = 209/295 (70%), Positives = 230/295 (77%), Gaps = 9/295 (3%) Query: 2 PAIESGGGHV---------RLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXX 52 PAI++ GG V RLRLD++YDGTDFAGWA Q GQRTVAG+IDEAL Sbjct: 5 PAIDTDGGLVHLSSSRAVTRLRLDVSYDGTDFAGWAPQTGQRTVAGLIDEALTTVFRTPV 64 Query: 53 XXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRV 112 AGRTD GVHATGQVAHVDVP +ALPHAYPR RP + EF PLVRRL FLPADVR+ Sbjct: 65 TVRAAGRTDAGVHATGQVAHVDVPDDALPHAYPRSARPDEPEFLPLVRRLGRFLPADVRI 124 Query: 113 RDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELL 172 RDI+RAP GFDARFSALRRHY YRL TAPYG EP RFVTPW RPLDV+AMN A +L+ Sbjct: 125 RDIIRAPTGFDARFSALRRHYTYRLGTAPYGVEPQSARFVTPWPRPLDVEAMNDAGSQLV 184 Query: 173 GLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEG 232 GL DFAAFCR+R GATTIRDLQRLEW R+G + AYV+ADAFCW+MVRSLVGAL+ VGE Sbjct: 185 GLRDFAAFCRHREGATTIRDLQRLEWTRDGDLVTAYVSADAFCWSMVRSLVGALIAVGEH 244 Query: 233 RRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRTID 287 RR PEW A LL AT RSSEF AAP +GLTL VDYPPDDEL AR +VTRD+R ID Sbjct: 245 RREPEWCAGLLSATRRSSEFAAAPPQGLTLVGVDYPPDDELAARTLVTRDLRVID 299 >tr|A1T522|A1T522_MYCVP Tax_Id=350058 SubName: Full=tRNA pseudouridine synthase A; EC=4.2.1.70;[Mycobacterium vanbaalenii] Length = 299 Score = 413 bits (1061), Expect = e-113 Identities = 211/295 (71%), Positives = 235/295 (79%), Gaps = 8/295 (2%) Query: 2 PAIESGGG--------HVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXX 53 PA +SGGG VRLRLDIAYDGTDFAGWA QAGQRTVAG ID+AL Sbjct: 4 PATDSGGGLVFISSRPGVRLRLDIAYDGTDFAGWATQAGQRTVAGAIDDALSTVFRTPVV 63 Query: 54 XXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVR 113 AGRTD+GVHATGQVAHVDVPA+ALP+AYPR TRP +AEF PLVRRL LP DVRVR Sbjct: 64 TRAAGRTDSGVHATGQVAHVDVPADALPYAYPRTTRPGEAEFGPLVRRLGRMLPEDVRVR 123 Query: 114 DIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLG 173 +I RA GFDARFSALRRHY+YRL+TAPYG EP E RFVTPW RPLDV AM AAA+EL+G Sbjct: 124 EITRAAPGFDARFSALRRHYLYRLSTAPYGVEPAEARFVTPWPRPLDVAAMAAAARELVG 183 Query: 174 LNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGR 233 L+DFAAFCR+R GATTIR+LQRL+ VR+G + +V+ADAFCWNMVRSLVGALL VGE R Sbjct: 184 LHDFAAFCRHRDGATTIRELQRLDCVRDGDRVEVHVSADAFCWNMVRSLVGALLAVGEHR 243 Query: 234 RSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRTIDQ 288 R W A LL AT RSS+F AAPARGLTL VDYPPD +LEARN+VTRD+RT D+ Sbjct: 244 RDAAWCAALLDATGRSSDFAAAPARGLTLVGVDYPPDAQLEARNLVTRDLRTADE 298 >tr|A4TEJ1|A4TEJ1_MYCGI Tax_Id=350054 SubName: Full=tRNA pseudouridine synthase A; EC=4.2.1.70;[Mycobacterium gilvum] Length = 298 Score = 412 bits (1060), Expect = e-113 Identities = 209/287 (72%), Positives = 228/287 (79%) Query: 2 PAIESGGGHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTD 61 PA +SGGG VRLRLDIAYDGTDFAGWA QAGQRTVAGVID+AL AGRTD Sbjct: 11 PATDSGGGFVRLRLDIAYDGTDFAGWATQAGQRTVAGVIDDALSTVFRTPVLTRAAGRTD 70 Query: 62 TGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAG 121 +GVHATGQVAH D+P +ALPHAYPR R + EF PLVRRL L DVRVR IVRA G Sbjct: 71 SGVHATGQVAHADIPTDALPHAYPRTVRAGEPEFGPLVRRLGRMLTEDVRVRGIVRAAPG 130 Query: 122 FDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFC 181 FDARFSALRRHYVYRLTTAPYG EP E RFVT W RPLDVDAM AAQ +LGL+DFAAFC Sbjct: 131 FDARFSALRRHYVYRLTTAPYGVEPAEARFVTAWPRPLDVDAMAGAAQNVLGLHDFAAFC 190 Query: 182 RYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAE 241 R+R GATTIR+LQRL+ VR+G I+ +V+ADAFCWNMVRSLVGALL VGE RR W + Sbjct: 191 RHRDGATTIRELQRLDCVRDGDRISVHVSADAFCWNMVRSLVGALLAVGEHRRDDTWCVQ 250 Query: 242 LLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRTIDQ 288 LL A RSS+F AAPARGLTL VDYPPDDEL ARN+VTRDVRT D+ Sbjct: 251 LLHARHRSSDFAAAPARGLTLVGVDYPPDDELAARNLVTRDVRTADE 297 >tr|D5PCI3|D5PCI3_9MYCO Tax_Id=525368 (truA)SubName: Full=tRNA pseudouridine synthase A; EC=4.2.1.70;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 302 Score = 395 bits (1015), Expect = e-108 Identities = 199/275 (72%), Positives = 219/275 (79%) Query: 11 VRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQV 70 VRLRLDIAYDGT+FAGWA QAGQRTVAGV+DEAL AGRTDTGVHATGQV Sbjct: 27 VRLRLDIAYDGTEFAGWATQAGQRTVAGVLDEALTTLFRAPMRLRAAGRTDTGVHATGQV 86 Query: 71 AHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALR 130 AHVDVP +ALP+AYPR R + EF PLVRRL FLP DVRV I RAPAGFDARFSALR Sbjct: 87 AHVDVPPDALPNAYPRAPRVGEPEFLPLVRRLGRFLPTDVRVLGIARAPAGFDARFSALR 146 Query: 131 RHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTI 190 RHY YRL+TAPYG EP R+VT W RPLDVDAM AA+++L+GL+DFA FCR+R ATTI Sbjct: 147 RHYTYRLSTAPYGVEPQRARYVTAWPRPLDVDAMAAASRDLVGLHDFAGFCRHRPNATTI 206 Query: 191 RDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSS 250 RDLQ L+W R+G I A+VTADAFCW+MVRSLVGALL VGE RR W LL ATSRSS Sbjct: 207 RDLQGLDWSRDGELITAHVTADAFCWSMVRSLVGALLAVGEHRRPVSWCRGLLTATSRSS 266 Query: 251 EFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRT 285 +F AAP GLTL VDYPPDDELEARN+VTRD+RT Sbjct: 267 DFAAAPPHGLTLVGVDYPPDDELEARNLVTRDLRT 301 >sp|P65846|TRUA_MYCTU Tax_Id=1773 (truA)RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12; AltName: Full=tRNA-uridine isomerase I; AltName: Full=tRNA pseudouridylate synthase I;[Mycobacterium tuberculosis] Length = 297 Score = 392 bits (1008), Expect = e-107 Identities = 194/277 (70%), Positives = 221/277 (79%) Query: 9 GHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATG 68 G VRLRLDIAYDGTDFAGWA Q GQRTVAG +D AL AGRTD GVHA+G Sbjct: 20 GVVRLRLDIAYDGTDFAGWAAQVGQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASG 79 Query: 69 QVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSA 128 QVAHVDVPA+ALP+AYPR D EF PL+RRL FLPADVR+ DI RAPAGFDARFSA Sbjct: 80 QVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSA 139 Query: 129 LRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGAT 188 LRRHYVYRL+TAPYG EP + R++T W R LD+DAM AA+++L+GL+DFAAFCR+R GAT Sbjct: 140 LRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGAT 199 Query: 189 TIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSR 248 TIRDLQRL+W R G + A+VTADAFCW+MVRSLVGALL VGE RR+ W ELL AT R Sbjct: 200 TIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGR 259 Query: 249 SSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRT 285 SS+F APA GLTL VDYPPDD+L +RN+VTRDVR+ Sbjct: 260 SSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 296 >sp|P65847|TRUA_MYCBO Tax_Id=1765 (truA)RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12; AltName: Full=tRNA-uridine isomerase I; AltName: Full=tRNA pseudouridylate synthase I;[Mycobacterium bovis] Length = 297 Score = 392 bits (1008), Expect = e-107 Identities = 194/277 (70%), Positives = 221/277 (79%) Query: 9 GHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATG 68 G VRLRLDIAYDGTDFAGWA Q GQRTVAG +D AL AGRTD GVHA+G Sbjct: 20 GVVRLRLDIAYDGTDFAGWAAQVGQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASG 79 Query: 69 QVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSA 128 QVAHVDVPA+ALP+AYPR D EF PL+RRL FLPADVR+ DI RAPAGFDARFSA Sbjct: 80 QVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSA 139 Query: 129 LRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGAT 188 LRRHYVYRL+TAPYG EP + R++T W R LD+DAM AA+++L+GL+DFAAFCR+R GAT Sbjct: 140 LRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGAT 199 Query: 189 TIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSR 248 TIRDLQRL+W R G + A+VTADAFCW+MVRSLVGALL VGE RR+ W ELL AT R Sbjct: 200 TIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGR 259 Query: 249 SSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRT 285 SS+F APA GLTL VDYPPDD+L +RN+VTRDVR+ Sbjct: 260 SSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 296 >tr|C6DLX6|C6DLX6_MYCTK Tax_Id=478434 SubName: Full=tRNA pseudouridine synthase A truA;[Mycobacterium tuberculosis] Length = 297 Score = 392 bits (1008), Expect = e-107 Identities = 194/277 (70%), Positives = 221/277 (79%) Query: 9 GHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATG 68 G VRLRLDIAYDGTDFAGWA Q GQRTVAG +D AL AGRTD GVHA+G Sbjct: 20 GVVRLRLDIAYDGTDFAGWAAQVGQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASG 79 Query: 69 QVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSA 128 QVAHVDVPA+ALP+AYPR D EF PL+RRL FLPADVR+ DI RAPAGFDARFSA Sbjct: 80 QVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSA 139 Query: 129 LRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGAT 188 LRRHYVYRL+TAPYG EP + R++T W R LD+DAM AA+++L+GL+DFAAFCR+R GAT Sbjct: 140 LRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGAT 199 Query: 189 TIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSR 248 TIRDLQRL+W R G + A+VTADAFCW+MVRSLVGALL VGE RR+ W ELL AT R Sbjct: 200 TIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGR 259 Query: 249 SSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRT 285 SS+F APA GLTL VDYPPDD+L +RN+VTRDVR+ Sbjct: 260 SSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 296 >tr|A5WT28|A5WT28_MYCTF Tax_Id=336982 SubName: Full=tRNA pseudouridine synthase A truA;[Mycobacterium tuberculosis] Length = 297 Score = 392 bits (1008), Expect = e-107 Identities = 194/277 (70%), Positives = 221/277 (79%) Query: 9 GHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATG 68 G VRLRLDIAYDGTDFAGWA Q GQRTVAG +D AL AGRTD GVHA+G Sbjct: 20 GVVRLRLDIAYDGTDFAGWAAQVGQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASG 79 Query: 69 QVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSA 128 QVAHVDVPA+ALP+AYPR D EF PL+RRL FLPADVR+ DI RAPAGFDARFSA Sbjct: 80 QVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSA 139 Query: 129 LRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGAT 188 LRRHYVYRL+TAPYG EP + R++T W R LD+DAM AA+++L+GL+DFAAFCR+R GAT Sbjct: 140 LRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGAT 199 Query: 189 TIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSR 248 TIRDLQRL+W R G + A+VTADAFCW+MVRSLVGALL VGE RR+ W ELL AT R Sbjct: 200 TIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGR 259 Query: 249 SSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRT 285 SS+F APA GLTL VDYPPDD+L +RN+VTRDVR+ Sbjct: 260 SSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 296 >tr|D6G421|D6G421_MYCTU Tax_Id=478435 SubName: Full=tRNA pseudouridine synthase A truA;[Mycobacterium tuberculosis KZN 605] Length = 297 Score = 392 bits (1008), Expect = e-107 Identities = 194/277 (70%), Positives = 221/277 (79%) Query: 9 GHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATG 68 G VRLRLDIAYDGTDFAGWA Q GQRTVAG +D AL AGRTD GVHA+G Sbjct: 20 GVVRLRLDIAYDGTDFAGWAAQVGQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASG 79 Query: 69 QVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSA 128 QVAHVDVPA+ALP+AYPR D EF PL+RRL FLPADVR+ DI RAPAGFDARFSA Sbjct: 80 QVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSA 139 Query: 129 LRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGAT 188 LRRHYVYRL+TAPYG EP + R++T W R LD+DAM AA+++L+GL+DFAAFCR+R GAT Sbjct: 140 LRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGAT 199 Query: 189 TIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSR 248 TIRDLQRL+W R G + A+VTADAFCW+MVRSLVGALL VGE RR+ W ELL AT R Sbjct: 200 TIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGR 259 Query: 249 SSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRT 285 SS+F APA GLTL VDYPPDD+L +RN+VTRDVR+ Sbjct: 260 SSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 296 >tr|D5YX72|D5YX72_MYCTU Tax_Id=515616 SubName: Full=tRNA pseudouridine synthase A truA;[Mycobacterium tuberculosis 02_1987] Length = 297 Score = 392 bits (1008), Expect = e-107 Identities = 194/277 (70%), Positives = 221/277 (79%) Query: 9 GHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATG 68 G VRLRLDIAYDGTDFAGWA Q GQRTVAG +D AL AGRTD GVHA+G Sbjct: 20 GVVRLRLDIAYDGTDFAGWAAQVGQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASG 79 Query: 69 QVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSA 128 QVAHVDVPA+ALP+AYPR D EF PL+RRL FLPADVR+ DI RAPAGFDARFSA Sbjct: 80 QVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSA 139 Query: 129 LRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGAT 188 LRRHYVYRL+TAPYG EP + R++T W R LD+DAM AA+++L+GL+DFAAFCR+R GAT Sbjct: 140 LRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGAT 199 Query: 189 TIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSR 248 TIRDLQRL+W R G + A+VTADAFCW+MVRSLVGALL VGE RR+ W ELL AT R Sbjct: 200 TIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGR 259 Query: 249 SSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRT 285 SS+F APA GLTL VDYPPDD+L +RN+VTRDVR+ Sbjct: 260 SSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 296 >tr|A4KLX9|A4KLX9_MYCTU Tax_Id=395095 SubName: Full=TRNA pseudouridine synthase A truA;[Mycobacterium tuberculosis str. Haarlem] Length = 297 Score = 392 bits (1008), Expect = e-107 Identities = 194/277 (70%), Positives = 221/277 (79%) Query: 9 GHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATG 68 G VRLRLDIAYDGTDFAGWA Q GQRTVAG +D AL AGRTD GVHA+G Sbjct: 20 GVVRLRLDIAYDGTDFAGWAAQVGQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASG 79 Query: 69 QVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSA 128 QVAHVDVPA+ALP+AYPR D EF PL+RRL FLPADVR+ DI RAPAGFDARFSA Sbjct: 80 QVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSA 139 Query: 129 LRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGAT 188 LRRHYVYRL+TAPYG EP + R++T W R LD+DAM AA+++L+GL+DFAAFCR+R GAT Sbjct: 140 LRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGAT 199 Query: 189 TIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSR 248 TIRDLQRL+W R G + A+VTADAFCW+MVRSLVGALL VGE RR+ W ELL AT R Sbjct: 200 TIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGR 259 Query: 249 SSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRT 285 SS+F APA GLTL VDYPPDD+L +RN+VTRDVR+ Sbjct: 260 SSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 296 >tr|A2VPN3|A2VPN3_MYCTU Tax_Id=348776 SubName: Full=TRNA pseudouridine synthase A truA;[Mycobacterium tuberculosis C] Length = 297 Score = 392 bits (1008), Expect = e-107 Identities = 194/277 (70%), Positives = 221/277 (79%) Query: 9 GHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATG 68 G VRLRLDIAYDGTDFAGWA Q GQRTVAG +D AL AGRTD GVHA+G Sbjct: 20 GVVRLRLDIAYDGTDFAGWAAQVGQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASG 79 Query: 69 QVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSA 128 QVAHVDVPA+ALP+AYPR D EF PL+RRL FLPADVR+ DI RAPAGFDARFSA Sbjct: 80 QVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSA 139 Query: 129 LRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGAT 188 LRRHYVYRL+TAPYG EP + R++T W R LD+DAM AA+++L+GL+DFAAFCR+R GAT Sbjct: 140 LRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGAT 199 Query: 189 TIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSR 248 TIRDLQRL+W R G + A+VTADAFCW+MVRSLVGALL VGE RR+ W ELL AT R Sbjct: 200 TIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGR 259 Query: 249 SSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRT 285 SS+F APA GLTL VDYPPDD+L +RN+VTRDVR+ Sbjct: 260 SSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 296 >sp|Q9X796|TRUA_MYCLE Tax_Id=1769 (truA)RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12; AltName: Full=tRNA-uridine isomerase I; AltName: Full=tRNA pseudouridylate synthase I;[Mycobacterium leprae] Length = 286 Score = 366 bits (939), Expect = 2e-99 Identities = 183/275 (66%), Positives = 211/275 (76%), Gaps = 1/275 (0%) Query: 11 VRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQV 70 VRLRLDIAYDGTDFAGWAVQAGQRTVAG +DEA AGRTDTGVHATGQV Sbjct: 11 VRLRLDIAYDGTDFAGWAVQAGQRTVAG-LDEAFTTVFRTPVRLRAAGRTDTGVHATGQV 69 Query: 71 AHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALR 130 AHVD+P AL A PR D EF PL+RRL+ LP DVRV DI AP GFDARFSALR Sbjct: 70 AHVDIPGTALSKANPRSPHTGDPEFLPLLRRLSRLLPVDVRVLDIACAPVGFDARFSALR 129 Query: 131 RHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTI 190 RHY YRL+TAPYG +P++ R+VT W R LD+D+M+AA+++LLGL DFA FCR+R GATTI Sbjct: 130 RHYRYRLSTAPYGVQPNQARYVTAWPRELDLDSMSAASRDLLGLRDFAVFCRHRHGATTI 189 Query: 191 RDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSS 250 R+LQRLEW R G+ I A++TADAFCW+MVRSL+GALL VG+ RR+ W ELL SRSS Sbjct: 190 RELQRLEWSREGYLITAHITADAFCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRSS 249 Query: 251 EFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRT 285 +F APA GLT VDYPPDDEL R V+TRD+R+ Sbjct: 250 DFTTAPAHGLTFIRVDYPPDDELAERAVITRDLRS 284 >tr|A0PMB9|A0PMB9_MYCUA Tax_Id=362242 (truA)SubName: Full=Pseudouridine synthase a, TruA;[Mycobacterium ulcerans] Length = 260 Score = 357 bits (917), Expect = 7e-97 Identities = 177/257 (68%), Positives = 203/257 (78%) Query: 29 VQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHT 88 +Q GQRTVAGV+DEAL AGRTD GVHATGQVAH DVP +ALP+AY R Sbjct: 1 MQTGQRTVAGVLDEALTTVLRTPVRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSA 60 Query: 89 RPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHE 148 R D EF PLVRRLA FLPAD+RV DI RAP FDARFSALRRHYVYRL+TAPYG EP + Sbjct: 61 RAGDPEFLPLVRRLARFLPADLRVLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQ 120 Query: 149 TRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAY 208 R+VT W R LD+DAM A+QELLGL++FAAFCR R GATTIRDLQRL+W RNG + A Sbjct: 121 ARYVTVWPRELDIDAMTVASQELLGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQ 180 Query: 209 VTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYP 268 V+ADAFCW+MVRSLVGALL VGE RR+P+W ELL AT+RSS+F AAPA GL LA VDYP Sbjct: 181 VSADAFCWSMVRSLVGALLAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYP 240 Query: 269 PDDELEARNVVTRDVRT 285 PDD+L +R ++TRD+R+ Sbjct: 241 PDDQLASRVLITRDLRS 257 >tr|C1AHR3|C1AHR3_MYCBT Tax_Id=561275 (truA)SubName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12;[Mycobacterium bovis] Length = 256 Score = 352 bits (903), Expect = 3e-95 Identities = 174/254 (68%), Positives = 201/254 (79%) Query: 32 GQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPT 91 GQRTVAG +D AL AGRTD GVHA+GQVAHVDVPA+ALP+AYPR Sbjct: 2 GQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVG 61 Query: 92 DAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRF 151 D EF PL+RRL FLPADVR+ DI RAPAGFDARFSALRRHYVYRL+TAPYG EP + R+ Sbjct: 62 DPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARY 121 Query: 152 VTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTA 211 +T W R LD+DAM AA+++L+GL+DFAAFCR+R GATTIRDLQRL+W R G + A+VTA Sbjct: 122 ITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTA 181 Query: 212 DAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDD 271 DAFCW+MVRSLVGALL VGE RR+ W ELL AT RSS+F APA GLTL VDYPPDD Sbjct: 182 DAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDD 241 Query: 272 ELEARNVVTRDVRT 285 +L +RN+VTRDVR+ Sbjct: 242 QLASRNLVTRDVRS 255 >tr|A5U8D1|A5U8D1_MYCTA Tax_Id=419947 (truA)SubName: Full=tRNA pseudouridine synthase A;[Mycobacterium tuberculosis] Length = 256 Score = 352 bits (903), Expect = 3e-95 Identities = 174/254 (68%), Positives = 201/254 (79%) Query: 32 GQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPT 91 GQRTVAG +D AL AGRTD GVHA+GQVAHVDVPA+ALP+AYPR Sbjct: 2 GQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVG 61 Query: 92 DAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRF 151 D EF PL+RRL FLPADVR+ DI RAPAGFDARFSALRRHYVYRL+TAPYG EP + R+ Sbjct: 62 DPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARY 121 Query: 152 VTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTA 211 +T W R LD+DAM AA+++L+GL+DFAAFCR+R GATTIRDLQRL+W R G + A+VTA Sbjct: 122 ITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTA 181 Query: 212 DAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDD 271 DAFCW+MVRSLVGALL VGE RR+ W ELL AT RSS+F APA GLTL VDYPPDD Sbjct: 182 DAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDD 241 Query: 272 ELEARNVVTRDVRT 285 +L +RN+VTRDVR+ Sbjct: 242 QLASRNLVTRDVRS 255 >tr|A1KPE1|A1KPE1_MYCBP Tax_Id=410289 (truA)SubName: Full=Probable tRNA pseudouridine synthase A truA; EC=4.2.1.70;[Mycobacterium bovis] Length = 256 Score = 352 bits (903), Expect = 3e-95 Identities = 174/254 (68%), Positives = 201/254 (79%) Query: 32 GQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPT 91 GQRTVAG +D AL AGRTD GVHA+GQVAHVDVPA+ALP+AYPR Sbjct: 2 GQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVG 61 Query: 92 DAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRF 151 D EF PL+RRL FLPADVR+ DI RAPAGFDARFSALRRHYVYRL+TAPYG EP + R+ Sbjct: 62 DPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARY 121 Query: 152 VTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTA 211 +T W R LD+DAM AA+++L+GL+DFAAFCR+R GATTIRDLQRL+W R G + A+VTA Sbjct: 122 ITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTA 181 Query: 212 DAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDD 271 DAFCW+MVRSLVGALL VGE RR+ W ELL AT RSS+F APA GLTL VDYPPDD Sbjct: 182 DAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDD 241 Query: 272 ELEARNVVTRDVRT 285 +L +RN+VTRDVR+ Sbjct: 242 QLASRNLVTRDVRS 255 >tr|D6FSF3|D6FSF3_MYCTU Tax_Id=611304 SubName: Full=tRNA pseudouridine synthase A truA;[Mycobacterium tuberculosis K85] Length = 256 Score = 352 bits (903), Expect = 3e-95 Identities = 174/254 (68%), Positives = 201/254 (79%) Query: 32 GQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPT 91 GQRTVAG +D AL AGRTD GVHA+GQVAHVDVPA+ALP+AYPR Sbjct: 2 GQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVG 61 Query: 92 DAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRF 151 D EF PL+RRL FLPADVR+ DI RAPAGFDARFSALRRHYVYRL+TAPYG EP + R+ Sbjct: 62 DPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARY 121 Query: 152 VTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTA 211 +T W R LD+DAM AA+++L+GL+DFAAFCR+R GATTIRDLQRL+W R G + A+VTA Sbjct: 122 ITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTA 181 Query: 212 DAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDD 271 DAFCW+MVRSLVGALL VGE RR+ W ELL AT RSS+F APA GLTL VDYPPDD Sbjct: 182 DAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDD 241 Query: 272 ELEARNVVTRDVRT 285 +L +RN+VTRDVR+ Sbjct: 242 QLASRNLVTRDVRS 255 >tr|D6FM27|D6FM27_MYCTU Tax_Id=611303 SubName: Full=tRNA pseudouridine synthase A truA;[Mycobacterium tuberculosis CPHL_A] Length = 256 Score = 352 bits (903), Expect = 3e-95 Identities = 174/254 (68%), Positives = 201/254 (79%) Query: 32 GQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPT 91 GQRTVAG +D AL AGRTD GVHA+GQVAHVDVPA+ALP+AYPR Sbjct: 2 GQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVG 61 Query: 92 DAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRF 151 D EF PL+RRL FLPADVR+ DI RAPAGFDARFSALRRHYVYRL+TAPYG EP + R+ Sbjct: 62 DPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARY 121 Query: 152 VTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTA 211 +T W R LD+DAM AA+++L+GL+DFAAFCR+R GATTIRDLQRL+W R G + A+VTA Sbjct: 122 ITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGSLVTAHVTA 181 Query: 212 DAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDD 271 DAFCW+MVRSLVGALL VGE RR+ W ELL AT RSS+F APA GLTL VDYPPDD Sbjct: 182 DAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDD 241 Query: 272 ELEARNVVTRDVRT 285 +L +RN+VTRDVR+ Sbjct: 242 QLASRNLVTRDVRS 255 >tr|D6FAC3|D6FAC3_MYCTU Tax_Id=611302 SubName: Full=tRNA pseudouridine synthase A;[Mycobacterium tuberculosis T46] Length = 256 Score = 352 bits (903), Expect = 3e-95 Identities = 174/254 (68%), Positives = 201/254 (79%) Query: 32 GQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPT 91 GQRTVAG +D AL AGRTD GVHA+GQVAHVDVPA+ALP+AYPR Sbjct: 2 GQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVG 61 Query: 92 DAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRF 151 D EF PL+RRL FLPADVR+ DI RAPAGFDARFSALRRHYVYRL+TAPYG EP + R+ Sbjct: 62 DPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARY 121 Query: 152 VTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTA 211 +T W R LD+DAM AA+++L+GL+DFAAFCR+R GATTIRDLQRL+W R G + A+VTA Sbjct: 122 ITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTA 181 Query: 212 DAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDD 271 DAFCW+MVRSLVGALL VGE RR+ W ELL AT RSS+F APA GLTL VDYPPDD Sbjct: 182 DAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDD 241 Query: 272 ELEARNVVTRDVRT 285 +L +RN+VTRDVR+ Sbjct: 242 QLASRNLVTRDVRS 255 >tr|D5ZLZ1|D5ZLZ1_MYCTU Tax_Id=537210 SubName: Full=tRNA pseudouridine synthase A truA;[Mycobacterium tuberculosis T17] Length = 256 Score = 352 bits (903), Expect = 3e-95 Identities = 174/254 (68%), Positives = 201/254 (79%) Query: 32 GQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPT 91 GQRTVAG +D AL AGRTD GVHA+GQVAHVDVPA+ALP+AYPR Sbjct: 2 GQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVG 61 Query: 92 DAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRF 151 D EF PL+RRL FLPADVR+ DI RAPAGFDARFSALRRHYVYRL+TAPYG EP + R+ Sbjct: 62 DPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARY 121 Query: 152 VTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTA 211 +T W R LD+DAM AA+++L+GL+DFAAFCR+R GATTIRDLQRL+W R G + A+VTA Sbjct: 122 ITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTA 181 Query: 212 DAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDD 271 DAFCW+MVRSLVGALL VGE RR+ W ELL AT RSS+F APA GLTL VDYPPDD Sbjct: 182 DAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDD 241 Query: 272 ELEARNVVTRDVRT 285 +L +RN+VTRDVR+ Sbjct: 242 QLASRNLVTRDVRS 255 >tr|D5Z8U4|D5Z8U4_MYCTU Tax_Id=537209 SubName: Full=tRNA pseudouridine synthase A truA;[Mycobacterium tuberculosis GM 1503] Length = 256 Score = 352 bits (903), Expect = 3e-95 Identities = 174/254 (68%), Positives = 201/254 (79%) Query: 32 GQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPT 91 GQRTVAG +D AL AGRTD GVHA+GQVAHVDVPA+ALP+AYPR Sbjct: 2 GQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVG 61 Query: 92 DAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRF 151 D EF PL+RRL FLPADVR+ DI RAPAGFDARFSALRRHYVYRL+TAPYG EP + R+ Sbjct: 62 DPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARY 121 Query: 152 VTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTA 211 +T W R LD+DAM AA+++L+GL+DFAAFCR+R GATTIRDLQRL+W R G + A+VTA Sbjct: 122 ITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTA 181 Query: 212 DAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDD 271 DAFCW+MVRSLVGALL VGE RR+ W ELL AT RSS+F APA GLTL VDYPPDD Sbjct: 182 DAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDD 241 Query: 272 ELEARNVVTRDVRT 285 +L +RN+VTRDVR+ Sbjct: 242 QLASRNLVTRDVRS 255 >tr|D5YK83|D5YK83_MYCTU Tax_Id=520140 SubName: Full=tRNA pseudouridine synthase A truA;[Mycobacterium tuberculosis EAS054] Length = 256 Score = 352 bits (903), Expect = 3e-95 Identities = 174/254 (68%), Positives = 201/254 (79%) Query: 32 GQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPT 91 GQRTVAG +D AL AGRTD GVHA+GQVAHVDVPA+ALP+AYPR Sbjct: 2 GQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVG 61 Query: 92 DAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRF 151 D EF PL+RRL FLPADVR+ DI RAPAGFDARFSALRRHYVYRL+TAPYG EP + R+ Sbjct: 62 DPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARY 121 Query: 152 VTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTA 211 +T W R LD+DAM AA+++L+GL+DFAAFCR+R GATTIRDLQRL+W R G + A+VTA Sbjct: 122 ITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTA 181 Query: 212 DAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDD 271 DAFCW+MVRSLVGALL VGE RR+ W ELL AT RSS+F APA GLTL VDYPPDD Sbjct: 182 DAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDD 241 Query: 272 ELEARNVVTRDVRT 285 +L +RN+VTRDVR+ Sbjct: 242 QLASRNLVTRDVRS 255 >tr|D5Y960|D5Y960_MYCTU Tax_Id=520141 SubName: Full=tRNA pseudouridine synthase A truA;[Mycobacterium tuberculosis T85] Length = 256 Score = 352 bits (903), Expect = 3e-95 Identities = 174/254 (68%), Positives = 201/254 (79%) Query: 32 GQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPT 91 GQRTVAG +D AL AGRTD GVHA+GQVAHVDVPA+ALP+AYPR Sbjct: 2 GQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVG 61 Query: 92 DAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRF 151 D EF PL+RRL FLPADVR+ DI RAPAGFDARFSALRRHYVYRL+TAPYG EP + R+ Sbjct: 62 DPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARY 121 Query: 152 VTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTA 211 +T W R LD+DAM AA+++L+GL+DFAAFCR+R GATTIRDLQRL+W R G + A+VTA Sbjct: 122 ITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTA 181 Query: 212 DAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDD 271 DAFCW+MVRSLVGALL VGE RR+ W ELL AT RSS+F APA GLTL VDYPPDD Sbjct: 182 DAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDD 241 Query: 272 ELEARNVVTRDVRT 285 +L +RN+VTRDVR+ Sbjct: 242 QLASRNLVTRDVRS 255 >tr|D5XZF5|D5XZF5_MYCTU Tax_Id=515617 SubName: Full=tRNA pseudouridine synthase A truA;[Mycobacterium tuberculosis T92] Length = 256 Score = 352 bits (903), Expect = 3e-95 Identities = 174/254 (68%), Positives = 201/254 (79%) Query: 32 GQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPT 91 GQRTVAG +D AL AGRTD GVHA+GQVAHVDVPA+ALP+AYPR Sbjct: 2 GQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVG 61 Query: 92 DAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRF 151 D EF PL+RRL FLPADVR+ DI RAPAGFDARFSALRRHYVYRL+TAPYG EP + R+ Sbjct: 62 DPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARY 121 Query: 152 VTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTA 211 +T W R LD+DAM AA+++L+GL+DFAAFCR+R GATTIRDLQRL+W R G + A+VTA Sbjct: 122 ITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTA 181 Query: 212 DAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDD 271 DAFCW+MVRSLVGALL VGE RR+ W ELL AT RSS+F APA GLTL VDYPPDD Sbjct: 182 DAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDD 241 Query: 272 ELEARNVVTRDVRT 285 +L +RN+VTRDVR+ Sbjct: 242 QLASRNLVTRDVRS 255 >tr|B1MG97|B1MG97_MYCA9 Tax_Id=561007 (truA)RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12;[Mycobacterium abscessus] Length = 294 Score = 348 bits (894), Expect = 3e-94 Identities = 182/283 (64%), Positives = 206/283 (72%), Gaps = 1/283 (0%) Query: 2 PAIESGGGHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTD 61 PAI GG VRLRLDIAYDGTDFAGWA Q QRTVAGV+ EA AGRTD Sbjct: 8 PAIPDGG-LVRLRLDIAYDGTDFAGWATQVNQRTVAGVLGEAFTTIVGDSVQLYAAGRTD 66 Query: 62 TGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAG 121 GVHATGQVAH+DVP LP R+ EF LVRRL+ FLP+DVRV DI RAPA Sbjct: 67 AGVHATGQVAHLDVPVACLPGLRGRYRPAGAPEFDRLVRRLSRFLPSDVRVLDISRAPAH 126 Query: 122 FDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFC 181 FDARFSALRRHY YRL+TA +G P V W RPLDVDAMN A++ LLGL DFAAFC Sbjct: 127 FDARFSALRRHYEYRLSTASFGVLPLARHDVVGWHRPLDVDAMNEASRNLLGLRDFAAFC 186 Query: 182 RYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAE 241 R+R GATTIR+LQR +W +G + AYV+ADAFCW+MVRSLVGA+L VGEGRR +W + Sbjct: 187 RHREGATTIRELQRFDWGVDGQRLTAYVSADAFCWSMVRSLVGAVLAVGEGRRPVQWCVD 246 Query: 242 LLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVR 284 LL RSS+F AAPARGLTL VDYPPDD++ AR ++TRDVR Sbjct: 247 LLNKERRSSDFAAAPARGLTLVGVDYPPDDQMAARVMITRDVR 289 >sp|Q73S41|TRUA_MYCPA Tax_Id=1770 (truA)RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12; AltName: Full=tRNA-uridine isomerase I; AltName: Full=tRNA pseudouridylate synthase I;[Mycobacterium paratuberculosis] Length = 251 Score = 340 bits (873), Expect = 9e-92 Identities = 169/250 (67%), Positives = 196/250 (78%) Query: 36 VAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEF 95 +AGV+DEAL AGRTD GVHATGQVAH+DVP ALP+AYPR +AEF Sbjct: 1 MAGVLDEALTTVFRTPVRLRAAGRTDAGVHATGQVAHLDVPGTALPNAYPRAPHVGEAEF 60 Query: 96 TPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPW 155 PL+RRL FLP DVRV DI RAPAGFDARFSALRRHYVYRL+TAP+G P + R+VT W Sbjct: 61 GPLLRRLGRFLPTDVRVVDITRAPAGFDARFSALRRHYVYRLSTAPWGVLPQQARYVTAW 120 Query: 156 TRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTADAFC 215 RPLDV+AM AA+++LLGL+DFAAFCR+R ATTIRDLQRL+W R+G I A V+ADAFC Sbjct: 121 PRPLDVEAMAAASRDLLGLHDFAAFCRHRENATTIRDLQRLDWTRDGDLITARVSADAFC 180 Query: 216 WNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEA 275 W+MVRSLVGALL VGE RR W ELL AT+RSS++ APA GLTL VDYPPDD+L A Sbjct: 181 WSMVRSLVGALLAVGENRRPVSWCRELLSATNRSSDYATAPAHGLTLVGVDYPPDDQLAA 240 Query: 276 RNVVTRDVRT 285 RN++TRDVR+ Sbjct: 241 RNLITRDVRS 250 >tr|A0QKU3|A0QKU3_MYCA1 Tax_Id=243243 (truA)SubName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12;[Mycobacterium avium] Length = 251 Score = 339 bits (870), Expect = 2e-91 Identities = 169/250 (67%), Positives = 196/250 (78%) Query: 36 VAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEF 95 +AGV+DEAL AGRTD GVHATGQVAH+DVP ALP+AYPR +AEF Sbjct: 1 MAGVLDEALTTVFRTPVRLRAAGRTDAGVHATGQVAHLDVPGTALPNAYPRAPHVGEAEF 60 Query: 96 TPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPW 155 PL+RRL FLP DVRV DI RAPAGFDARFSALRRHYVYRL+TAP+G P + R+VT W Sbjct: 61 GPLLRRLGRFLPTDVRVVDITRAPAGFDARFSALRRHYVYRLSTAPWGVLPQQARYVTAW 120 Query: 156 TRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTADAFC 215 RPLDV+AM AA+++LLGL+DFAAFCR+R ATTIRDLQRL+W R+G I A V+ADAFC Sbjct: 121 PRPLDVEAMAAASRDLLGLHDFAAFCRHRENATTIRDLQRLDWTRDGDLIIARVSADAFC 180 Query: 216 WNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEA 275 W+MVRSLVGALL VGE RR W ELL AT+RSS++ APA GLTL VDYPPDD+L A Sbjct: 181 WSMVRSLVGALLAVGENRRPVSWCRELLSATNRSSDYATAPAHGLTLVGVDYPPDDQLAA 240 Query: 276 RNVVTRDVRT 285 RN++TRDVR+ Sbjct: 241 RNLITRDVRS 250 >tr|B2HCX6|B2HCX6_MYCMM Tax_Id=216594 (truA)SubName: Full=Pseudouridine synthase a, TruA;[Mycobacterium marinum] Length = 237 Score = 335 bits (859), Expect = 4e-90 Identities = 163/229 (71%), Positives = 188/229 (82%) Query: 57 AGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIV 116 AGRTD GVHATGQVAH DVP +ALP+AY R R D EF PLVRRLA FLPAD+RV DI Sbjct: 6 AGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLRVLDIA 65 Query: 117 RAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLND 176 RAP FDARFSALRRHYVYRL+TAPYG EP + R+VT W R LD+DAM A++ELLGL++ Sbjct: 66 RAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASRELLGLHN 125 Query: 177 FAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSP 236 FAAFCR R GATTIRDLQRL+W RNG + A V+ADAFCW+MVRSLVGALL VGE RR+P Sbjct: 126 FAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGEHRRTP 185 Query: 237 EWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRT 285 +W ELL AT+RSS+F AAPA GL LA VDYPPDD+L +R ++TRD+R+ Sbjct: 186 DWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234 >tr|D5PR64|D5PR64_COREQ Tax_Id=525370 (truA)SubName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12;[Rhodococcus equi ATCC 33707] Length = 296 Score = 321 bits (822), Expect = 8e-86 Identities = 167/285 (58%), Positives = 198/285 (69%), Gaps = 12/285 (4%) Query: 2 PAIESG-GGHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRT 60 PA SG GG VRLRLDI+YDGTDF+GWA Q G+RTV G I+E L AGRT Sbjct: 11 PAAPSGDGGFVRLRLDISYDGTDFSGWARQPGRRTVCGEIEEKLSAIVRTPVLLTVAGRT 70 Query: 61 DTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPA 120 D GVHA+GQVAHVDVPA+ +P R LVRRLA FLP DVRV+ + AP Sbjct: 71 DAGVHASGQVAHVDVPADMIPEEPSR-----------LVRRLARFLPRDVRVKAVSFAPE 119 Query: 121 GFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAF 180 FDARFSA+RRHY YRLTTAPYG EP R W + +DVDAM A+ LLGL+DFAAF Sbjct: 120 HFDARFSAIRRHYEYRLTTAPYGAEPLRARDTVAWPKDVDVDAMRKASSRLLGLHDFAAF 179 Query: 181 CRYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTA 240 C+ R GATT+R+LQR +W ++G + A+V+ADAFCW+MVRSLVGA L VGEGRR+ EW A Sbjct: 180 CKRREGATTVRELQRFDWEQSGHELTAFVSADAFCWSMVRSLVGAALAVGEGRRTVEWMA 239 Query: 241 ELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRT 285 LL R+S APA GL+L VDYP D++L ARN TR++RT Sbjct: 240 GLLAERERASAVAVAPAHGLSLIRVDYPADEDLAARNEATREMRT 284 >tr|B8ZSH4|B8ZSH4_MYCLB Tax_Id=561304 (truA)SubName: Full=Probable pseudouridylate synthase;[Mycobacterium leprae] Length = 249 Score = 315 bits (807), Expect = 4e-84 Identities = 155/247 (62%), Positives = 184/247 (74%) Query: 39 VIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPL 98 ++DEA AGRTDTGVHATGQVAHVD+P AL A PR D EF PL Sbjct: 1 MLDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFLPL 60 Query: 99 VRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRP 158 +RRL+ LP DVRV DI AP GFDARFSALRRHY YRL+TAPYG +P++ R+VT W R Sbjct: 61 LRRLSRLLPVDVRVLDIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRE 120 Query: 159 LDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNM 218 LD+D+M+AA+++LLGL DFA FCR+R GATTIR+LQRLEW R G+ I A++TADAFCW+M Sbjct: 121 LDLDSMSAASRDLLGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSM 180 Query: 219 VRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNV 278 VRSL+GALL VG+ RR+ W ELL SRSS+F APA GLT VDYPPDDEL R V Sbjct: 181 VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAV 240 Query: 279 VTRDVRT 285 +TRD+R+ Sbjct: 241 ITRDLRS 247 >tr|D0L2F0|D0L2F0_GORB4 Tax_Id=526226 (truA)RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12;[Gordonia bronchialis] Length = 291 Score = 305 bits (782), Expect = 3e-81 Identities = 164/286 (57%), Positives = 186/286 (65%), Gaps = 9/286 (3%) Query: 2 PAIESGG--GHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGR 59 PA+ G G RLRLD+ Y+GTDFAGWA Q QRTV V+++ L AGR Sbjct: 4 PAVTDAGDSGFCRLRLDVGYEGTDFAGWARQTDQRTVGAVLEDTLATVLRIPVRLTVAGR 63 Query: 60 TDTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAP 119 TD GVHATGQV H D+P AL TR + + LV RLA LP DVRV++I Sbjct: 64 TDAGVHATGQVCHTDIPVSAL------QTRSIGGDPSLLVGRLAKMLPDDVRVKEIASVS 117 Query: 120 AGFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAA 179 FDARFSALRRHY YRLT A +G EP R W RPLDVDAMNAA+ LLGLNDFAA Sbjct: 118 GDFDARFSALRRHYEYRLTDARWGAEPIHARTTATWRRPLDVDAMNAASASLLGLNDFAA 177 Query: 180 FCRYRAGATTIRDLQRLEWVRN-GFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEW 238 FCR R GATTIRDLQ+ W R+ G + V+ADAFCW+MVRSLVGA+ VG+GRR +W Sbjct: 178 FCRRREGATTIRDLQQFSWTRHAGGVLVGQVSADAFCWSMVRSLVGAVASVGDGRRDIDW 237 Query: 239 TAELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVR 284 LL T RSS+ P A A GL L VDYP DDEL RN VTRDVR Sbjct: 238 CRGLLAETQRSSQVPVADACGLCLVRVDYPADDELAERNTVTRDVR 283 >tr|Q0S3E5|Q0S3E5_RHOSR Tax_Id=101510 SubName: Full=Pseudouridylate synthase; EC=4.2.1.70;[Rhodococcus sp.] Length = 297 Score = 303 bits (777), Expect = 1e-80 Identities = 162/277 (58%), Positives = 188/277 (67%), Gaps = 11/277 (3%) Query: 9 GHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATG 68 G RLRLDIAYDGTDF+GWA Q G RTV G I+E L AGRTD GVHATG Sbjct: 24 GTRRLRLDIAYDGTDFSGWARQNGLRTVCGEIEEKLGAVLRTPLQLTVAGRTDAGVHATG 83 Query: 69 QVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSA 128 QVAHVDVP +ALP R LVRRLA FLP DVR++ I AP FDARFSA Sbjct: 84 QVAHVDVPVDALPDDPSR-----------LVRRLARFLPKDVRIKRIAFAPEHFDARFSA 132 Query: 129 LRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGAT 188 +RRHY YRLT+A YG +P R + + LD++ M +A+ LLGL+DFAAFC+ R GAT Sbjct: 133 MRRHYEYRLTSAVYGADPLRARDTVSYPKVLDLELMRSASATLLGLHDFAAFCKRREGAT 192 Query: 189 TIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSR 248 T+RDLQR +W R+G A+V+ADAFCW+MVRSLVGA+L VGEGRR W LL SR Sbjct: 193 TVRDLQRFDWERDGDVFTAFVSADAFCWSMVRSLVGAVLAVGEGRRDLGWIEGLLQEKSR 252 Query: 249 SSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRT 285 SS APA GL+L VDYP D +L ARN +TRDVRT Sbjct: 253 SSSILVAPAHGLSLVRVDYPDDADLAARNKITRDVRT 289 >tr|C3JGZ4|C3JGZ4_RHOER Tax_Id=596309 (truA)SubName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12;[Rhodococcus erythropolis SK121] Length = 294 Score = 303 bits (777), Expect = 1e-80 Identities = 163/289 (56%), Positives = 190/289 (65%), Gaps = 12/289 (4%) Query: 2 PAIESG-GGHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRT 60 PA G GG VRLRLDI+YDGTDF+GWA Q RTV G I++ L AGRT Sbjct: 11 PAAPIGDGGLVRLRLDISYDGTDFSGWARQTDLRTVCGEIEDKLGTVLRRPVQLTVAGRT 70 Query: 61 DTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPA 120 D GVHATGQVAHVDVP E LP R LVRRLA FLP DVRV+ I P Sbjct: 71 DAGVHATGQVAHVDVPGELLPDDPSR-----------LVRRLARFLPKDVRVKQISVVPG 119 Query: 121 GFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAF 180 FDARFSA+RR+Y YR+T A +G EP R + +PLD+ AM A+ LLGL++FAAF Sbjct: 120 DFDARFSAMRRYYEYRVTNAAFGVEPLRARDTVSYPKPLDLGAMQEASNRLLGLHNFAAF 179 Query: 181 CRYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTA 240 C+ R GATT+R+LQR +W + G AYV ADAFCW+MVRSLVGA+L VGEGRR+ +W A Sbjct: 180 CKRREGATTVRELQRFDWTQVGTVFTAYVNADAFCWSMVRSLVGAVLSVGEGRRTADWVA 239 Query: 241 ELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRTIDQS 289 LL TSRSS APA GL+L VDYP EL ARN +TR+ R I S Sbjct: 240 GLLDETSRSSSILVAPAHGLSLVRVDYPDYSELAARNAITRETREIPSS 288 >tr|C1B043|C1B043_RHOOB Tax_Id=632772 (truA)SubName: Full=tRNA pseudouridine synthase TruA; EC=5.4.99.12;[Rhodococcus opacus] Length = 270 Score = 302 bits (773), Expect = 4e-80 Identities = 159/274 (58%), Positives = 187/274 (68%), Gaps = 11/274 (4%) Query: 13 LRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAH 72 +RLD+AYDGTDF+GWA Q G RTV G I+E L AGRTD GVHATGQVAH Sbjct: 1 MRLDVAYDGTDFSGWARQNGLRTVCGEIEEKLGAVLRSPLQLTVAGRTDAGVHATGQVAH 60 Query: 73 VDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRH 132 VDVP EALP R LVRRLA FLP DVR++ I AP FDARFSA+RRH Sbjct: 61 VDVPVEALPDEPSR-----------LVRRLARFLPKDVRIKQISFAPEHFDARFSAMRRH 109 Query: 133 YVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRD 192 Y YRLT+A YG +P R + + LD++ M +A+ LLGL+DFAAFC+ R GATT+RD Sbjct: 110 YEYRLTSAVYGADPLRARDTVSYPKILDLELMRSASATLLGLHDFAAFCKRREGATTVRD 169 Query: 193 LQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSSEF 252 LQR +W R+G A+V+ADAFCW+MVRSLVGA+L VGEGRR +W LL TSRSS Sbjct: 170 LQRFDWERDGDVFTAFVSADAFCWSMVRSLVGAVLAVGEGRRDLDWIEGLLRETSRSSSI 229 Query: 253 PAAPARGLTLAAVDYPPDDELEARNVVTRDVRTI 286 APA GL L VDYP +L ARN +TRDVRT+ Sbjct: 230 LVAPAHGLCLVRVDYPEAADLAARNRITRDVRTV 263 >tr|C0ZW56|C0ZW56_RHOE4 Tax_Id=234621 (truA)SubName: Full=tRNA pseudouridine synthase TruA; EC=5.4.99.12;[Rhodococcus erythropolis] Length = 294 Score = 302 bits (773), Expect = 4e-80 Identities = 162/289 (56%), Positives = 189/289 (65%), Gaps = 12/289 (4%) Query: 2 PAIESG-GGHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRT 60 PA G GG VRLRLDI+YDGTDF+GWA Q RTV G I++ L AGRT Sbjct: 11 PAAPIGDGGLVRLRLDISYDGTDFSGWARQTDLRTVCGEIEDKLGTVLRQPVQLTVAGRT 70 Query: 61 DTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPA 120 D GVHATGQVAHVDVP E LP R LVRRLA FLP DVRV+ I P Sbjct: 71 DAGVHATGQVAHVDVPGELLPDDPSR-----------LVRRLARFLPKDVRVKQISVVPG 119 Query: 121 GFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAF 180 FDARFSA+RR+Y YR+T A +G EP R + +PLD+ AM A+ LLGL++FAAF Sbjct: 120 DFDARFSAIRRYYEYRVTNAAFGVEPLRARDTVSYPKPLDLAAMQEASNRLLGLHNFAAF 179 Query: 181 CRYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTA 240 C+ R GATT+R+LQR +W + G AYV ADAFCW+MVRSLVGA+L VGEGRR+ +W A Sbjct: 180 CKRREGATTVRELQRFDWAQEGTVFTAYVNADAFCWSMVRSLVGAVLSVGEGRRTADWVA 239 Query: 241 ELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRTIDQS 289 LL T RSS APA GL+L VDYP EL ARN +TR+ R I S Sbjct: 240 GLLDETLRSSSILVAPAHGLSLVRVDYPDYSELAARNAITRETREIPSS 288 >tr|D5UWG5|D5UWG5_TSUPA Tax_Id=521096 SubName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12;[Tsukamurella paurometabola DSM 20162] Length = 273 Score = 297 bits (761), Expect = 9e-79 Identities = 163/277 (58%), Positives = 182/277 (65%), Gaps = 16/277 (5%) Query: 12 RLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVA 71 R RLDIAYDGTDF+GWA Q +RTV GV++EA+ AGRTD GVHATGQVA Sbjct: 3 RYRLDIAYDGTDFSGWARQPERRTVCGVVEEAIGTVLRTPVQLTVAGRTDAGVHATGQVA 62 Query: 72 HVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRR 131 HVD ALP LVRRLA LP DVRV I APA FDARFSALRR Sbjct: 63 HVDTDL-ALPEG--------------LVRRLARMLPQDVRVTAIAEAPAEFDARFSALRR 107 Query: 132 HYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIR 191 HY YRLT APYG P R PW RP+DV+ M AA+ LLGL+DFAAFCR R GATT+R Sbjct: 108 HYEYRLTDAPYGANPLRARDTAPWRRPVDVERMQAASDALLGLHDFAAFCRRREGATTVR 167 Query: 192 DLQRLEWVRNGFYI-NAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSS 250 +LQR W R+ + A V+ADAFCW+MVRSLVGA+ VGEGRRS EW A LL RSS Sbjct: 168 ELQRFAWRRDADGVCTAEVSADAFCWSMVRSLVGAVAAVGEGRRSVEWVAGLLDERERSS 227 Query: 251 EFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRTID 287 A A GLTL VDYP DDEL RN +TR+ R +D Sbjct: 228 AINVAAACGLTLVRVDYPADDELAERNRITREKREVD 264 >tr|D2SH72|D2SH72_GEOOG Tax_Id=526225 SubName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12;[Geodermatophilus obscurus] Length = 282 Score = 292 bits (748), Expect = 3e-77 Identities = 163/284 (57%), Positives = 176/284 (61%), Gaps = 11/284 (3%) Query: 2 PAIESGGGHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTD 61 PA GGG VRLRL IAYDGT GWA Q QRTV G ++EAL AGRTD Sbjct: 10 PATAPGGGLVRLRLGIAYDGTALHGWARQPAQRTVQGDLEEALSRVLRQPVSLTVAGRTD 69 Query: 62 TGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAG 121 GVHATGQVAH DVP PR LVRRL G LP D+ V + AP Sbjct: 70 AGVHATGQVAHGDVPRAVWAEQRPR-----------LVRRLRGVLPPDIAVHTVEEAPRD 118 Query: 122 FDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFC 181 FDARF ALRRHYVYRLT A GP P W R LD DAM AA+ LLGL+DFAAFC Sbjct: 119 FDARFGALRRHYVYRLTDADSGPPPLRRADTVGWPRRLDADAMAVAAELLLGLHDFAAFC 178 Query: 182 RYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAE 241 R R GATTIR L L R G + +ADAFC +MVRSLVGAL VGEGRR PEW A Sbjct: 179 RRREGATTIRTLLTLAVTREGDLVTVRASADAFCHSMVRSLVGALTAVGEGRRPPEWPAA 238 Query: 242 LLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRT 285 LL +T RSSE P P GLTL VDYPPDDEL AR V+TR +R+ Sbjct: 239 LLTSTERSSEVPVVPPGGLTLVGVDYPPDDELAARAVLTRGLRS 282 >tr|C6WLZ4|C6WLZ4_ACTMD Tax_Id=446462 SubName: Full=tRNA-pseudouridine synthase I; EC=5.4.99.12;[Actinosynnema mirum] Length = 314 Score = 289 bits (739), Expect = 3e-76 Identities = 153/278 (55%), Positives = 183/278 (65%), Gaps = 14/278 (5%) Query: 7 GGGHVRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHA 66 GGG VR+RLD+AYDGT+F+GWA Q +RTV GV+++ + AGRTD GVHA Sbjct: 33 GGGRVRVRLDLAYDGTEFSGWARQPNRRTVCGVLEDTMSTVLREDVVLTVAGRTDAGVHA 92 Query: 67 TGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARF 126 GQVAHVD+P A + L +RLA LPADVRV PA FDARF Sbjct: 93 AGQVAHVDLPEAA--------------DVAGLPKRLARALPADVRVFSARVVPAAFDARF 138 Query: 127 SALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAG 186 +ALRRHY YR+T AP+G P W R LDV AMNAA+ +LG DF A+CR R G Sbjct: 139 AALRRHYEYRVTDAPFGAHPLRRLDTLAWPRQLDVAAMNAASGLMLGERDFCAYCRRREG 198 Query: 187 ATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGAT 246 ATTIR+LQRLEWVR G + A+V+ADAFC +MVRSLVGALL VGEGR+ EW A LL Sbjct: 199 ATTIRELQRLEWVREGDLLTAFVSADAFCHSMVRSLVGALLAVGEGRKPVEWPASLLSLH 258 Query: 247 SRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVR 284 SRSSE AP GL+L VDYP D++L AR +TR++R Sbjct: 259 SRSSEVTVAPPHGLSLVRVDYPADEDLAARAEITRNIR 296 >tr|C6R9B4|C6R9B4_9CORY Tax_Id=553206 (truA)RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12;[Corynebacterium tuberculostearicum SK141] Length = 297 Score = 287 bits (735), Expect = 9e-76 Identities = 160/285 (56%), Positives = 182/285 (63%), Gaps = 12/285 (4%) Query: 9 GHVRLRLDIAYDGTDFAGWAVQ-AGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHAT 67 G VRLRLD+AYDGTDF GWA Q G RTV GV++E L AGRTD GVHA Sbjct: 19 GFVRLRLDLAYDGTDFHGWAKQKGGLRTVQGVLEEKLAMIARTEVPLTVAGRTDAGVHAR 78 Query: 68 GQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFS 127 GQVAHVDVP E L R E LVRRLA LP DVRV APAGFDARFS Sbjct: 79 GQVAHVDVPTEMLAQ------RSVAGEPGKLVRRLAKLLPEDVRVHGCEFAPAGFDARFS 132 Query: 128 ALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGA 187 ALRRHYVYR+TT P G P R W +P+D+DAM AA L+GL+DFAAFC+ + A Sbjct: 133 ALRRHYVYRITTNPRGALPTRARDTAEWIKPVDIDAMQEAATALVGLHDFAAFCKAKPNA 192 Query: 188 TTIRDLQRLEW-----VRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAEL 242 TTIR+LQ W A V+ADAFCW+MVRSLVG L+VGEGRR ++ A L Sbjct: 193 TTIRELQEFSWRDVSTPEEPELYEARVSADAFCWSMVRSLVGCCLRVGEGRRDTDFAAAL 252 Query: 243 LGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRTID 287 L T RSS P APA+GL+L AVDYP D+L AR VTR+ R+ D Sbjct: 253 LQETKRSSSIPVAPAKGLSLVAVDYPAADKLAARAEVTRERRSAD 297 >tr|C2BK37|C2BK37_9CORY Tax_Id=525264 (truA)RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12;[Corynebacterium pseudogenitalium ATCC 33035] Length = 297 Score = 287 bits (735), Expect = 9e-76 Identities = 160/285 (56%), Positives = 181/285 (63%), Gaps = 12/285 (4%) Query: 9 GHVRLRLDIAYDGTDFAGWAVQ-AGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHAT 67 G VRLRLD+AYDGTDF GWA Q G RTV GV++E L AGRTD GVHA Sbjct: 19 GFVRLRLDLAYDGTDFHGWAKQKGGLRTVQGVLEEKLAMIARTEVPLTVAGRTDAGVHAR 78 Query: 68 GQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFS 127 GQVAHVDVP E L R E LVRRLA LP DVRV APAGFDARFS Sbjct: 79 GQVAHVDVPTEMLAQ------RSVAGEPGKLVRRLAKLLPEDVRVHGCEFAPAGFDARFS 132 Query: 128 ALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGA 187 ALRRHYVYR+TT P G P R W +P+D+DAM AA L+GL+DFAAFC+ + A Sbjct: 133 ALRRHYVYRITTNPRGALPTRARDTAEWIKPVDIDAMQEAATALVGLHDFAAFCKAKPNA 192 Query: 188 TTIRDLQRLEW-----VRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAEL 242 TTIR+LQ W A V+ADAFCW+MVRSLVG L+VGEGRR ++ A L Sbjct: 193 TTIRELQEFSWRDASTPEEPELFEARVSADAFCWSMVRSLVGCCLRVGEGRRDADFAAAL 252 Query: 243 LGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRTID 287 L T RSS P APA+GL+L AVDYP D L AR VTR+ R+ D Sbjct: 253 LQETKRSSSIPVAPAKGLSLVAVDYPAADRLAARAEVTRERRSAD 297 >sp|Q5Z1K7|TRUA_NOCFA Tax_Id=37329 (truA)RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12; AltName: Full=tRNA-uridine isomerase I; AltName: Full=tRNA pseudouridylate synthase I;[Nocardia farcinica] Length = 257 Score = 283 bits (725), Expect = 1e-74 Identities = 153/260 (58%), Positives = 174/260 (66%), Gaps = 14/260 (5%) Query: 26 GWAVQAGQRTVAGVIDEALXXXXXXXXXXXXAGRTDTGVHATGQVAHVDVPAEALPHAYP 85 GWA Q G RTV GV+++AL AGRTD GVHA GQVAH D AE Sbjct: 2 GWARQPGLRTVQGVLEDALGKVLREPIQLTVAGRTDAGVHAEGQVAHFDTAAEF------ 55 Query: 86 RHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPE 145 + LV RLA FLP DVRV+ P FDARFSA+RRHYVYRLTTAPYG E Sbjct: 56 --------DGPQLVHRLARFLPKDVRVKRADVVPPDFDARFSAIRRHYVYRLTTAPYGAE 107 Query: 146 PHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYI 205 P R V P +DVDAM A+ LLGL+DFAAFCR R GATT+R+LQR +W R G + Sbjct: 108 PLAARSVVPCKSAVDVDAMRRASGLLLGLHDFAAFCRRREGATTVRELQRFDWERQGDLL 167 Query: 206 NAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRSSEFPAAPARGLTLAAV 265 A+V+ADAFCW+MVRSLVGA+L VGEGRRSPEW A LL T RSS APA GL+L AV Sbjct: 168 LAHVSADAFCWSMVRSLVGAVLAVGEGRRSPEWVAGLLRETQRSSSVTVAPAHGLSLVAV 227 Query: 266 DYPPDDELEARNVVTRDVRT 285 DYP DDEL ARNV TR++R+ Sbjct: 228 DYPADDELAARNVQTREMRS 247 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.322 0.136 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 2,406,121,520 Number of extensions: 99496633 Number of successful extensions: 196627 Number of sequences better than 10.0: 2849 Number of HSP's gapped: 189589 Number of HSP's successfully gapped: 2901 Length of query: 291 Length of database: 4,236,830,644 Length adjustment: 137 Effective length of query: 154 Effective length of database: 2,523,253,276 Effective search space: 388581004504 Effective search space used: 388581004504 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 80 (35.4 bits)