BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_1599 (192 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0QSU0|A0QSU0_MYCS2 Tax_Id=246196 SubName: Full=RNA polymeras... 326 1e-87 tr|Q1BCV8|Q1BCV8_MYCSS Tax_Id=164756 SubName: Full=RNA polymeras... 297 5e-79 tr|A3PVR7|A3PVR7_MYCSJ Tax_Id=164757 SubName: Full=RNA polymeras... 297 5e-79 tr|A1UC35|A1UC35_MYCSK Tax_Id=189918 SubName: Full=RNA polymeras... 297 5e-79 tr|A1T590|A1T590_MYCVP Tax_Id=350058 SubName: Full=RNA polymeras... 295 1e-78 tr|A4TEQ1|A4TEQ1_MYCGI Tax_Id=350054 SubName: Full=RNA polymeras... 282 1e-74 tr|D5PCL4|D5PCL4_9MYCO Tax_Id=525368 (sigD)SubName: Full=RNA pol... 260 5e-68 sp|P66811|RPSD_MYCTU Tax_Id=1773 (sigD)RecName: Full=Probable RN... 256 7e-67 sp|P66812|RPSD_MYCBO Tax_Id=1765 (sigD)RecName: Full=Probable RN... 256 7e-67 tr|C6DLT7|C6DLT7_MYCTK Tax_Id=478434 RecName: Full=RNA polymeras... 256 7e-67 tr|C1AHM7|C1AHM7_MYCBT Tax_Id=561275 (sigD)RecName: Full=RNA pol... 256 7e-67 tr|A5WSY4|A5WSY4_MYCTF Tax_Id=336982 RecName: Full=RNA polymeras... 256 7e-67 tr|A5U889|A5U889_MYCTA Tax_Id=419947 (sigD)RecName: Full=RNA pol... 256 7e-67 tr|A1KPA5|A1KPA5_MYCBP Tax_Id=410289 (sigD)RecName: Full=RNA pol... 256 7e-67 tr|D6G3Y5|D6G3Y5_MYCTU Tax_Id=478435 SubName: Full=Alternative R... 256 7e-67 tr|D6FSA9|D6FSA9_MYCTU Tax_Id=611304 SubName: Full=Alternative R... 256 7e-67 tr|D6FLY1|D6FLY1_MYCTU Tax_Id=611303 SubName: Full=Alternative R... 256 7e-67 tr|D6F9Z6|D6F9Z6_MYCTU Tax_Id=611302 SubName: Full=Alternative R... 256 7e-67 tr|D5Z8Q4|D5Z8Q4_MYCTU Tax_Id=537209 SubName: Full=Alternative R... 256 7e-67 tr|D5YX27|D5YX27_MYCTU Tax_Id=515616 SubName: Full=Alternative R... 256 7e-67 tr|D5YK39|D5YK39_MYCTU Tax_Id=520140 SubName: Full=RNA polymeras... 256 7e-67 tr|D5Y916|D5Y916_MYCTU Tax_Id=520141 SubName: Full=RNA polymeras... 256 7e-67 tr|D5XZA9|D5XZA9_MYCTU Tax_Id=515617 SubName: Full=Alternative R... 256 7e-67 tr|A4KLU7|A4KLU7_MYCTU Tax_Id=395095 RecName: Full=RNA polymeras... 256 7e-67 tr|A2VPK1|A2VPK1_MYCTU Tax_Id=348776 RecName: Full=RNA polymeras... 256 7e-67 tr|B2HD19|B2HD19_MYCMM Tax_Id=216594 (sigD)RecName: Full=RNA pol... 254 3e-66 tr|A0PMF7|A0PMF7_MYCUA Tax_Id=362242 (sigD)RecName: Full=RNA pol... 254 3e-66 tr|Q73S03|Q73S03_MYCPA Tax_Id=1770 (sigD)RecName: Full=RNA polym... 248 2e-64 tr|A0QKQ6|A0QKQ6_MYCA1 Tax_Id=243243 RecName: Full=RNA polymeras... 248 2e-64 tr|B1MG53|B1MG53_MYCA9 Tax_Id=561007 SubName: Full=Probable RNA ... 238 3e-61 tr|C0ZWA3|C0ZWA3_RHOE4 Tax_Id=234621 (sigD)SubName: Full=Putativ... 229 1e-58 tr|C3JGV1|C3JGV1_RHOER Tax_Id=596309 SubName: Full=RNA polymeras... 229 1e-58 tr|Q0S3B3|Q0S3B3_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,... 226 8e-58 tr|C1B108|C1B108_RHOOB Tax_Id=632772 (sigD)SubName: Full=RNA pol... 226 8e-58 tr|Q5Z1F4|Q5Z1F4_NOCFA Tax_Id=37329 SubName: Full=Putative sigma... 226 1e-57 tr|D5UUG6|D5UUG6_TSUPA Tax_Id=521096 SubName: Full=RNA polymeras... 226 1e-57 tr|C6WLV3|C6WLV3_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras... 221 5e-56 tr|D5PR04|D5PR04_COREQ Tax_Id=525370 SubName: Full=RNA polymeras... 220 8e-56 tr|C7MU18|C7MU18_SACVD Tax_Id=471857 SubName: Full=RNA polymeras... 216 9e-55 tr|C6WDG3|C6WDG3_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras... 209 1e-52 tr|D0L7X2|D0L7X2_GORB4 Tax_Id=526226 SubName: Full=RNA polymeras... 207 4e-52 tr|A4FPA2|A4FPA2_SACEN Tax_Id=405948 (sigD)SubName: Full=RNA pol... 189 2e-46 tr|C6W8F7|C6W8F7_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras... 188 2e-46 tr|C6R722|C6R722_9CORY Tax_Id=553206 SubName: Full=RNA polymeras... 164 5e-39 tr|Q8NSR8|Q8NSR8_CORGL Tax_Id=1718 (sigD)SubName: Full=DNA-direc... 163 9e-39 >tr|A0QSU0|A0QSU0_MYCS2 Tax_Id=246196 SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium smegmatis] Length = 192 Score = 326 bits (835), Expect = 1e-87 Identities = 175/192 (91%), Positives = 175/192 (91%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC Sbjct: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LAAITALPRYRDQGRPFLAFVYGI EPTDVVPERFSLDAGPEQS Sbjct: 61 LAAITALPRYRDQGRPFLAFVYGIAAHKVADAHRAAARNRAEPTDVVPERFSLDAGPEQS 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL Sbjct: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 Query: 181 KTEIMATGRDHA 192 KTEIMATGRDHA Sbjct: 181 KTEIMATGRDHA 192 >tr|Q1BCV8|Q1BCV8_MYCSS Tax_Id=164756 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 192 Score = 297 bits (760), Expect = 5e-79 Identities = 158/192 (82%), Positives = 167/192 (86%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT SGDRLDAVVAEAVAG+RDALREVLE IRPI+VRYCRARIGATERSGLSADDVAQEVC Sbjct: 1 MTLSGDRLDAVVAEAVAGNRDALREVLETIRPIVVRYCRARIGATERSGLSADDVAQEVC 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LAAITALPRY+DQGRPFLAFVYGI +PTDVVPERFS +AGPEQ Sbjct: 61 LAAITALPRYKDQGRPFLAFVYGIAAHKIADAHRSASRNKSDPTDVVPERFSGEAGPEQL 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI++ESSARM KLL VLP+KQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL Sbjct: 121 AINAESSARMEKLLGVLPDKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 Query: 181 KTEIMATGRDHA 192 K EI+ATG DHA Sbjct: 181 KAEIIATGHDHA 192 >tr|A3PVR7|A3PVR7_MYCSJ Tax_Id=164757 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 192 Score = 297 bits (760), Expect = 5e-79 Identities = 158/192 (82%), Positives = 167/192 (86%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT SGDRLDAVVAEAVAG+RDALREVLE IRPI+VRYCRARIGATERSGLSADDVAQEVC Sbjct: 1 MTLSGDRLDAVVAEAVAGNRDALREVLETIRPIVVRYCRARIGATERSGLSADDVAQEVC 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LAAITALPRY+DQGRPFLAFVYGI +PTDVVPERFS +AGPEQ Sbjct: 61 LAAITALPRYKDQGRPFLAFVYGIAAHKIADAHRAASRNKSDPTDVVPERFSGEAGPEQL 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI++ESSARM KLL VLP+KQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL Sbjct: 121 AINAESSARMEKLLGVLPDKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 Query: 181 KTEIMATGRDHA 192 K EI+ATG DHA Sbjct: 181 KAEIIATGHDHA 192 >tr|A1UC35|A1UC35_MYCSK Tax_Id=189918 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 192 Score = 297 bits (760), Expect = 5e-79 Identities = 158/192 (82%), Positives = 167/192 (86%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT SGDRLDAVVAEAVAG+RDALREVLE IRPI+VRYCRARIGATERSGLSADDVAQEVC Sbjct: 1 MTLSGDRLDAVVAEAVAGNRDALREVLETIRPIVVRYCRARIGATERSGLSADDVAQEVC 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LAAITALPRY+DQGRPFLAFVYGI +PTDVVPERFS +AGPEQ Sbjct: 61 LAAITALPRYKDQGRPFLAFVYGIAAHKIADAHRSASRNKSDPTDVVPERFSGEAGPEQL 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI++ESSARM KLL VLP+KQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL Sbjct: 121 AINAESSARMEKLLGVLPDKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 Query: 181 KTEIMATGRDHA 192 K EI+ATG DHA Sbjct: 181 KAEIIATGHDHA 192 >tr|A1T590|A1T590_MYCVP Tax_Id=350058 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium vanbaalenii] Length = 192 Score = 295 bits (756), Expect = 1e-78 Identities = 155/192 (80%), Positives = 165/192 (85%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT SG+RLDAVVAEAVAGDRDALREVLE IRP++VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 1 MTISGERLDAVVAEAVAGDRDALREVLETIRPLVVRYCRARVGTAERSGLSADDVAQEVC 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LAAITALPRY+DQGRPFLAFVYGI +P DVVPERFS +AGPEQ Sbjct: 61 LAAITALPRYKDQGRPFLAFVYGIAAHKVADAHRAAGRNKADPMDVVPERFSGEAGPEQL 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AIDSESSARMA+LL +LPEKQREILILRVVVGMSAEETA+AVGSTAGAVRVAQHRAL RL Sbjct: 121 AIDSESSARMAELLQILPEKQREILILRVVVGMSAEETADAVGSTAGAVRVAQHRALTRL 180 Query: 181 KTEIMATGRDHA 192 KTEIMA GRDHA Sbjct: 181 KTEIMAAGRDHA 192 >tr|A4TEQ1|A4TEQ1_MYCGI Tax_Id=350054 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium gilvum] Length = 194 Score = 282 bits (722), Expect = 1e-74 Identities = 153/194 (78%), Positives = 162/194 (83%), Gaps = 2/194 (1%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT SG+RLDAVVAEAVAGDR ALREVLE IRP++VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 1 MTISGERLDAVVAEAVAGDRGALREVLETIRPLVVRYCRARVGTAERSGLSADDVAQEVC 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LAAITALPRYRDQGRPFLAFVYGI +P DVVPER S +AGPEQ Sbjct: 61 LAAITALPRYRDQGRPFLAFVYGIAAHKVADAHRAAGRNRADPMDVVPERLSGEAGPEQM 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AIDSESSARMA LL VLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRAL+RL Sbjct: 121 AIDSESSARMATLLKVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALSRL 180 Query: 181 KTEIMAT--GRDHA 192 K EI +T GRD+A Sbjct: 181 KAEITSTGQGRDYA 194 >tr|D5PCL4|D5PCL4_9MYCO Tax_Id=525368 (sigD)SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 191 Score = 260 bits (665), Expect = 5e-68 Identities = 133/188 (70%), Positives = 155/188 (82%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT GDRLDAVVA+AVAGDR+ALREVLE IRPI+VRYCRAR+G ER GLSADDVAQEVC Sbjct: 1 MTIQGDRLDAVVAKAVAGDRNALREVLETIRPIVVRYCRARVGTVERGGLSADDVAQEVC 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI PT+++PER+S DAGPEQ Sbjct: 61 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDLSYPTEIIPERWSSDAGPEQR 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S +RM++LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL+RL Sbjct: 121 AIEADSVSRMSELLEILPAKQREILILRVVVGLSAEETASAVGSTTGAVRVAQHRALSRL 180 Query: 181 KTEIMATG 188 K+E++A G Sbjct: 181 KSEMIAAG 188 >sp|P66811|RPSD_MYCTU Tax_Id=1773 (sigD)RecName: Full=Probable RNA polymerase sigma-D factor;[Mycobacterium tuberculosis] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >sp|P66812|RPSD_MYCBO Tax_Id=1765 (sigD)RecName: Full=Probable RNA polymerase sigma-D factor;[Mycobacterium bovis] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|C6DLT7|C6DLT7_MYCTK Tax_Id=478434 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|C1AHM7|C1AHM7_MYCBT Tax_Id=561275 (sigD)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|A5WSY4|A5WSY4_MYCTF Tax_Id=336982 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|A5U889|A5U889_MYCTA Tax_Id=419947 (sigD)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|A1KPA5|A1KPA5_MYCBP Tax_Id=410289 (sigD)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|D6G3Y5|D6G3Y5_MYCTU Tax_Id=478435 SubName: Full=Alternative RNA polymerase sigma factor sigD;[Mycobacterium tuberculosis KZN 605] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|D6FSA9|D6FSA9_MYCTU Tax_Id=611304 SubName: Full=Alternative RNA polymerase sigma factor sigD;[Mycobacterium tuberculosis K85] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|D6FLY1|D6FLY1_MYCTU Tax_Id=611303 SubName: Full=Alternative RNA polymerase sigma factor sigD;[Mycobacterium tuberculosis CPHL_A] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|D6F9Z6|D6F9Z6_MYCTU Tax_Id=611302 SubName: Full=Alternative RNA polymerase sigma factor sigD;[Mycobacterium tuberculosis T46] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|D5Z8Q4|D5Z8Q4_MYCTU Tax_Id=537209 SubName: Full=Alternative RNA polymerase sigma-d factor sigD;[Mycobacterium tuberculosis GM 1503] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|D5YX27|D5YX27_MYCTU Tax_Id=515616 SubName: Full=Alternative RNA polymerase sigma factor sigD;[Mycobacterium tuberculosis 02_1987] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|D5YK39|D5YK39_MYCTU Tax_Id=520140 SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium tuberculosis EAS054] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|D5Y916|D5Y916_MYCTU Tax_Id=520141 SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium tuberculosis T85] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|D5XZA9|D5XZA9_MYCTU Tax_Id=515617 SubName: Full=Alternative RNA polymerase sigma factor sigD;[Mycobacterium tuberculosis T92] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|A4KLU7|A4KLU7_MYCTU Tax_Id=395095 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis str. Haarlem] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|A2VPK1|A2VPK1_MYCTU Tax_Id=348776 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis C] Length = 212 Score = 256 bits (655), Expect = 7e-67 Identities = 134/188 (71%), Positives = 150/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + +PER+S DAGPEQ Sbjct: 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 202 KDEIVAAG 209 >tr|B2HD19|B2HD19_MYCMM Tax_Id=216594 (sigD)RecName: Full=RNA polymerase sigma factor;[Mycobacterium marinum] Length = 197 Score = 254 bits (650), Expect = 3e-66 Identities = 135/188 (71%), Positives = 149/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + VPER S DAGPEQ Sbjct: 67 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPAESVPERRSADAGPEQL 126 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 186 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 187 KDEIVAAG 194 >tr|A0PMF7|A0PMF7_MYCUA Tax_Id=362242 (sigD)RecName: Full=RNA polymerase sigma factor;[Mycobacterium ulcerans] Length = 197 Score = 254 bits (650), Expect = 3e-66 Identities = 135/188 (71%), Positives = 149/188 (79%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA ITALPRYRD+GRPFLAF+YGI P + VPER S DAGPEQ Sbjct: 67 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPAESVPERRSADAGPEQL 126 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL Sbjct: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 186 Query: 181 KTEIMATG 188 K EI+A G Sbjct: 187 KDEIVAAG 194 >tr|Q73S03|Q73S03_MYCPA Tax_Id=1770 (sigD)RecName: Full=RNA polymerase sigma factor;[Mycobacterium paratuberculosis] Length = 198 Score = 248 bits (634), Expect = 2e-64 Identities = 127/185 (68%), Positives = 151/185 (81%) Query: 4 SGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVCLAA 63 +G+RLDAVVA+AV GD +ALREVLE IRPI+VRYCRAR+G ER GLSADDVAQEVCLA Sbjct: 11 AGERLDAVVAKAVTGDHNALREVLETIRPIVVRYCRARVGTVERGGLSADDVAQEVCLAT 70 Query: 64 ITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQSAID 123 ITALPRYRD+GRPFLAF+YGI PT+ +P+R+S DAGPEQ AI+ Sbjct: 71 ITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPTESIPDRWSNDAGPEQLAIE 130 Query: 124 SESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARLKTE 183 ++S +RM++LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL+RLK+E Sbjct: 131 ADSVSRMSELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALSRLKSE 190 Query: 184 IMATG 188 ++A G Sbjct: 191 MIAAG 195 >tr|A0QKQ6|A0QKQ6_MYCA1 Tax_Id=243243 RecName: Full=RNA polymerase sigma factor;[Mycobacterium avium] Length = 192 Score = 248 bits (634), Expect = 2e-64 Identities = 127/185 (68%), Positives = 151/185 (81%) Query: 4 SGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVCLAA 63 +G+RLDAVVA+AV GD +ALREVLE IRPI+VRYCRAR+G ER GLSADDVAQEVCLA Sbjct: 5 AGERLDAVVAKAVTGDHNALREVLETIRPIVVRYCRARVGTVERGGLSADDVAQEVCLAT 64 Query: 64 ITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQSAID 123 ITALPRYRD+GRPFLAF+YGI PT+ +P+R+S DAGPEQ AI+ Sbjct: 65 ITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPTESIPDRWSNDAGPEQLAIE 124 Query: 124 SESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARLKTE 183 ++S +RM++LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL+RLK+E Sbjct: 125 ADSVSRMSELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALSRLKSE 184 Query: 184 IMATG 188 ++A G Sbjct: 185 MIAAG 189 >tr|B1MG53|B1MG53_MYCA9 Tax_Id=561007 SubName: Full=Probable RNA polymerase sigma-D factor;[Mycobacterium abscessus] Length = 192 Score = 238 bits (607), Expect = 3e-61 Identities = 126/188 (67%), Positives = 142/188 (75%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MTS+ LD VVA AV GDRDAL EVL IRP++VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 1 MTSTESGLDDVVAAAVRGDRDALSEVLSAIRPVVVRYCRARVGTAERSGLSADDVAQEVC 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA I ALPRY+DQGRPFLAFVYGI +P + +PE+ AGPEQ Sbjct: 61 LAVIAALPRYQDQGRPFLAFVYGIAAHKVADAHRAMARDKSDPAENLPEQVDRHAGPEQE 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 A++SESS RM LL VLPEKQREILILRVVVG+SAEETA+AVGS+AGAVRVAQHRAL +L Sbjct: 121 ALNSESSRRMQALLEVLPEKQREILILRVVVGLSAEETADAVGSSAGAVRVAQHRALQKL 180 Query: 181 KTEIMATG 188 K E+ G Sbjct: 181 KAEMTRAG 188 >tr|C0ZWA3|C0ZWA3_RHOE4 Tax_Id=234621 (sigD)SubName: Full=Putative RNA polymerase ECF-type sigma factor SigD;[Rhodococcus erythropolis] Length = 192 Score = 229 bits (585), Expect = 1e-58 Identities = 121/188 (64%), Positives = 138/188 (73%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT++ D LD VA A GDR AL VLE IRP++VRYCR R+GA ER LSADDVAQEVC Sbjct: 1 MTNTSDELDTAVAAAAQGDRTALALVLENIRPMVVRYCRGRVGAAERGHLSADDVAQEVC 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA +TALPRY+DQGRPF+AFVYGI EP VP+ +LD GPEQ Sbjct: 61 LAVMTALPRYQDQGRPFMAFVYGIAAHKVADAHRSSARNKSEPVSEVPDVIALDDGPEQR 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 A+DSESS +M +LL LPEK REILILR+VVGMSAEETA AVGSTAGAVRVAQHRA+A+L Sbjct: 121 ALDSESSRQMHELLGTLPEKHREILILRLVVGMSAEETAVAVGSTAGAVRVAQHRAIAKL 180 Query: 181 KTEIMATG 188 K E+ G Sbjct: 181 KKEVTKAG 188 >tr|C3JGV1|C3JGV1_RHOER Tax_Id=596309 SubName: Full=RNA polymerase sigma factor SigD;[Rhodococcus erythropolis SK121] Length = 192 Score = 229 bits (585), Expect = 1e-58 Identities = 121/188 (64%), Positives = 138/188 (73%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT++ D LD VA A GDR AL VLE IRP++VRYCR R+GA ER LSADDVAQEVC Sbjct: 1 MTNTSDELDTAVAAAAQGDRTALALVLENIRPMVVRYCRGRVGAAERGHLSADDVAQEVC 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA +TALPRY+DQGRPF+AFVYGI EP VP+ +LD GPEQ Sbjct: 61 LAVMTALPRYQDQGRPFMAFVYGIAAHKVADAHRSSARNKSEPVSEVPDVIALDDGPEQR 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 A+DSESS +M +LL LPEK REILILR+VVGMSAEETA AVGSTAGAVRVAQHRA+A+L Sbjct: 121 ALDSESSRQMHELLGTLPEKHREILILRLVVGMSAEETAVAVGSTAGAVRVAQHRAIAKL 180 Query: 181 KTEIMATG 188 K E+ G Sbjct: 181 KKEVTKAG 188 >tr|Q0S3B3|Q0S3B3_RHOSR Tax_Id=101510 SubName: Full=Sigma factor, sigma 70 type, group 4 (ECF);[Rhodococcus sp.] Length = 192 Score = 226 bits (577), Expect = 8e-58 Identities = 120/188 (63%), Positives = 139/188 (73%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT++ + LD+ VA A GDR AL VLE IRP++VRYCRAR+GA ER LSADDVAQEVC Sbjct: 1 MTNTSEELDSAVAAATQGDRAALALVLENIRPLVVRYCRARVGAAERGQLSADDVAQEVC 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA +TALPRY DQGRPF+AFVYGI EP VP+ + D GPEQ Sbjct: 61 LAVMTALPRYEDQGRPFMAFVYGIAAHKVADAHRNSARNKSEPVAEVPDVVANDDGPEQR 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 A+DSE+S +M +LLS LPEK REILILR+VVGMSAEETA AVGSTAGAVRVAQHRA+A+L Sbjct: 121 ALDSEASRQMNELLSTLPEKHREILILRLVVGMSAEETAAAVGSTAGAVRVAQHRAIAKL 180 Query: 181 KTEIMATG 188 K E+ G Sbjct: 181 KKEVTRAG 188 >tr|C1B108|C1B108_RHOOB Tax_Id=632772 (sigD)SubName: Full=RNA polymerase ECF-type sigma factor SigD;[Rhodococcus opacus] Length = 192 Score = 226 bits (577), Expect = 8e-58 Identities = 120/188 (63%), Positives = 139/188 (73%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT++ + LD+ VA A GDR AL VLE IRP++VRYCRAR+GA ER LSADDVAQEVC Sbjct: 1 MTNTSEELDSAVAAATQGDRAALALVLENIRPLVVRYCRARVGAAERGQLSADDVAQEVC 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA +TALPRY DQGRPF+AFVYGI EP VP+ + D GPEQ Sbjct: 61 LAVMTALPRYEDQGRPFMAFVYGIAAHKVADAHRNSARNKSEPVAEVPDVVANDDGPEQR 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 A+DSE+S +M +LLS LPEK REILILR+VVGMSAEETA AVGSTAGAVRVAQHRA+A+L Sbjct: 121 ALDSEASRQMNELLSTLPEKHREILILRLVVGMSAEETAAAVGSTAGAVRVAQHRAIAKL 180 Query: 181 KTEIMATG 188 K E+ G Sbjct: 181 KKEVTRAG 188 >tr|Q5Z1F4|Q5Z1F4_NOCFA Tax_Id=37329 SubName: Full=Putative sigma factor;[Nocardia farcinica] Length = 203 Score = 226 bits (576), Expect = 1e-57 Identities = 115/188 (61%), Positives = 141/188 (75%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT +G+ LD VA A GDR AL +VLE++RP++VRYCRARIGA ER LSADDVAQEVC Sbjct: 12 MTHTGEELDLAVAAAAQGDRTALAQVLELVRPLVVRYCRARIGAAERGQLSADDVAQEVC 71 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA +TALPRY+DQGRPF+AFVYGI E VP+ S D GPEQ Sbjct: 72 LAVMTALPRYQDQGRPFMAFVYGIASHKVADAHRNAARNKAEAMAEVPDVISTDQGPEQR 131 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 A++SE+S +M +LL+ LPEK REIL+LR+V+G+SAEETA AVGSTAGA+RVAQHRALA+L Sbjct: 132 ALESETSRQMNRLLATLPEKHREILVLRLVMGLSAEETAAAVGSTAGAIRVAQHRALAKL 191 Query: 181 KTEIMATG 188 K+++ G Sbjct: 192 KSQVARAG 199 >tr|D5UUG6|D5UUG6_TSUPA Tax_Id=521096 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Tsukamurella paurometabola DSM 20162] Length = 190 Score = 226 bits (575), Expect = 1e-57 Identities = 115/188 (61%), Positives = 139/188 (73%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 M +G+ LD V EA GDR AL +VL+ IRP++VRYCRAR+G ER LSA+D+AQEVC Sbjct: 1 MILTGEELDRAVREAARGDRSALADVLDSIRPLVVRYCRARVGGGERHSLSAEDIAQEVC 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 +A + ALPRY DQGRPF+AFVYGI +P +PER SLD+GPE + Sbjct: 61 MAVMMALPRYEDQGRPFMAFVYGIAAHKVADGFRAATRNKSDPVSEMPERASLDSGPEVT 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 A++SE++ RM +LL LPEKQREILILRVVVG+SAEETAEAVG TAGAVRVAQHRALA+L Sbjct: 121 ALESEANRRMNRLLGTLPEKQREILILRVVVGLSAEETAEAVGGTAGAVRVAQHRALAKL 180 Query: 181 KTEIMATG 188 K +I G Sbjct: 181 KNQIAKEG 188 >tr|C6WLV3|C6WLV3_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Actinosynnema mirum] Length = 190 Score = 221 bits (562), Expect = 5e-56 Identities = 118/186 (63%), Positives = 134/186 (72%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT+ GD LDA V AV GDR A+ +L IRP++VRYCRAR+G ERS SADDVAQEVC Sbjct: 1 MTNLGDGLDAEVGAAVDGDRHAIERLLASIRPLVVRYCRARVGRQERSFASADDVAQEVC 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA +TALP YRDQGRPFLAFVYGI EP VP+ +AGPEQ Sbjct: 61 LAVLTALPSYRDQGRPFLAFVYGIAAHKVADAHRSAARNRSEPVPEVPDAPETEAGPEQR 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 A+ E S RMA+LL +LPEKQREIL+LRVVVG+SAEETA AVGST GAVRVAQHRALARL Sbjct: 121 AMQGELSGRMAQLLKILPEKQREILLLRVVVGLSAEETATAVGSTPGAVRVAQHRALARL 180 Query: 181 KTEIMA 186 + + A Sbjct: 181 RKALAA 186 >tr|D5PR04|D5PR04_COREQ Tax_Id=525370 SubName: Full=RNA polymerase sigma-70 factor;[Rhodococcus equi ATCC 33707] Length = 192 Score = 220 bits (560), Expect = 8e-56 Identities = 113/191 (59%), Positives = 140/191 (73%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 M+++G+ L++ VA A GDR+AL +VL IRP++VRYCRAR+GA ER LSADDVAQEVC Sbjct: 1 MSNTGEELNSAVAAAAQGDRNALSQVLASIRPLVVRYCRARVGAAERGQLSADDVAQEVC 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA +TALPRY+DQGRPF+AFVYGI +P VP+ S D PE+ Sbjct: 61 LAVMTALPRYQDQGRPFMAFVYGIAAHKVADAHRNAARNKSDPVAEVPDVVSADDSPEER 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 A++SE+S ++ LL LPEK REIL+LR+VVG+SAEETA AVGSTAGAVRVAQHRALA+L Sbjct: 121 ALNSETSRQVNALLQTLPEKHREILVLRLVVGLSAEETAAAVGSTAGAVRVAQHRALAKL 180 Query: 181 KTEIMATGRDH 191 K E+ G H Sbjct: 181 KKEVTKAGERH 191 >tr|C7MU18|C7MU18_SACVD Tax_Id=471857 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Saccharomonospora viridis] Length = 190 Score = 216 bits (551), Expect = 9e-55 Identities = 115/186 (61%), Positives = 133/186 (71%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 MT+ GD LD VA AV GD A+ +L IRP++VRYCRAR+G ERS SADDVAQEVC Sbjct: 1 MTNVGDGLDESVAAAVEGDPQAVERLLAAIRPLVVRYCRARVGRQERSFTSADDVAQEVC 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA +TALP YRDQGRPFLAFVYGI EP +P+ D GPEQ Sbjct: 61 LAVLTALPSYRDQGRPFLAFVYGIAQHKVADAHRAASRNRAEPVADIPDEIEGDIGPEQR 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 A+ E + RM++LL VLPEKQREI++LRVVVG+SAEETAEAVGST GAVRVAQHRALARL Sbjct: 121 ALRGELNERMSQLLQVLPEKQREIVVLRVVVGLSAEETAEAVGSTPGAVRVAQHRALARL 180 Query: 181 KTEIMA 186 + + A Sbjct: 181 RKALAA 186 >tr|C6WDG3|C6WDG3_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Actinosynnema mirum] Length = 197 Score = 209 bits (533), Expect = 1e-52 Identities = 108/170 (63%), Positives = 128/170 (75%) Query: 12 VAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVCLAAITALPRYR 71 V A AGDR A+RE+L ++RP++VRYCRAR+G ER+ SADDVAQEVCLA +TALP YR Sbjct: 19 VRAAAAGDRAAVRELLAVVRPVVVRYCRARVGRQERTFASADDVAQEVCLAVLTALPSYR 78 Query: 72 DQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQSAIDSESSARMA 131 DQGRPFLAFVYGI EP +P+ S +AGPE A+ E S RMA Sbjct: 79 DQGRPFLAFVYGIAAHKVADAHRAAARNRAEPVPELPDSVSTEAGPETRALHGELSDRMA 138 Query: 132 KLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARLK 181 +LL VLP+KQREIL+LRVVVG+SAEETA+AVGST GAVRVAQHRALA+L+ Sbjct: 139 RLLRVLPDKQREILVLRVVVGLSAEETAQAVGSTPGAVRVAQHRALAKLQ 188 >tr|D0L7X2|D0L7X2_GORB4 Tax_Id=526226 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Gordonia bronchialis] Length = 195 Score = 207 bits (528), Expect = 4e-52 Identities = 110/188 (58%), Positives = 133/188 (70%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 M +G LD V A GDR AL VLE ++ I+RYCR RIGA ER SADD+AQE Sbjct: 1 MKLTGGELDDAVRAARQGDRAALTSVLESVQDPILRYCRGRIGAGERHLFSADDIAQEAL 60 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 +A +TALPRY+DQG+PF+AFVYGI +PTD VPE +L GPEQ Sbjct: 61 MAVMTALPRYQDQGKPFMAFVYGIAAHKVADALRVAGRVKADPTDDVPEVTTLAGGPEQL 120 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 A+D+++S RM LL +LPEKQRE+L+LR+VVGMSAEETA+AVGST GAVRVAQHRALA+L Sbjct: 121 ALDADASRRMRALLEILPEKQREVLVLRLVVGMSAEETADAVGSTPGAVRVAQHRALAKL 180 Query: 181 KTEIMATG 188 K E+ TG Sbjct: 181 KNELKRTG 188 >tr|A4FPA2|A4FPA2_SACEN Tax_Id=405948 (sigD)SubName: Full=RNA polymerase sigma factor;[Saccharopolyspora erythraea] Length = 158 Score = 189 bits (479), Expect = 2e-46 Identities = 101/154 (65%), Positives = 113/154 (73%) Query: 33 IIVRYCRARIGATERSGLSADDVAQEVCLAAITALPRYRDQGRPFLAFVYGIXXXXXXXX 92 ++VRYCRAR+G ERS SADDVAQEVCLA +TALP YRDQGRPFLAFVYGI Sbjct: 1 MVVRYCRARVGRNERSFASADDVAQEVCLAVLTALPSYRDQGRPFLAFVYGIAAHKVADA 60 Query: 93 XXXXXXXXXEPTDVVPERFSLDAGPEQSAIDSESSARMAKLLSVLPEKQREILILRVVVG 152 EP VP+ +AGPEQ A+ E S RMA+LL VLP KQREIL+LRVVVG Sbjct: 61 HRASARNRSEPVADVPDTPESEAGPEQRAMQGELSGRMAQLLRVLPAKQREILLLRVVVG 120 Query: 153 MSAEETAEAVGSTAGAVRVAQHRALARLKTEIMA 186 +SAEETAEAVGST GAVRVAQHRALARL+ + A Sbjct: 121 LSAEETAEAVGSTPGAVRVAQHRALARLRKTLSA 154 >tr|C6W8F7|C6W8F7_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Actinosynnema mirum] Length = 216 Score = 188 bits (478), Expect = 2e-46 Identities = 102/173 (58%), Positives = 121/173 (69%), Gaps = 3/173 (1%) Query: 12 VAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVCLAAITALPRYR 71 V AVAGDR A+ +L ++RP+IV+YCRAR+G + ADDVAQEVCLA + ALP Y+ Sbjct: 38 VTAAVAGDRAAVERLLGVLRPLIVKYCRARVGGAYAT---ADDVAQEVCLAVLKALPNYQ 94 Query: 72 DQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQSAIDSESSARMA 131 DQGRPFLAFVYGI EP +P++ AGPE A+ E S +MA Sbjct: 95 DQGRPFLAFVYGIAAHKVADVHRFAARNRAEPVAELPDKPESSAGPEARALQGEVSEQMA 154 Query: 132 KLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARLKTEI 184 +LL VLPEKQREIL+LRVVVGMSAEETA AV ST GAVRVAQHRALARL+ + Sbjct: 155 ELLRVLPEKQREILLLRVVVGMSAEETAHAVRSTPGAVRVAQHRALARLRVAL 207 >tr|C6R722|C6R722_9CORY Tax_Id=553206 SubName: Full=RNA polymerase sigma factor SigD;[Corynebacterium tuberculostearicum SK141] Length = 190 Score = 164 bits (415), Expect = 5e-39 Identities = 90/186 (48%), Positives = 120/186 (64%), Gaps = 2/186 (1%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 M+ L +V AV G R AL+EVL II P ++RYCRARIG + +A+DVAQE+C Sbjct: 1 MSDKEQELADLVPHAVDGSRRALQEVLRIIHPQVLRYCRARIGGGRQP--TAEDVAQEIC 58 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA T++ Y D+GRPF+A+VYGI PT+ +PE + +A PE+ Sbjct: 59 LAVATSIGSYEDKGRPFMAYVYGIAFNKVTDAHRAMGRDKSTPTEEIPEDSAHEATPEEW 118 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 A++++ S RM LL L +K + I+ILRV G+SAEETAE VGST GAVRVAQHRALA+L Sbjct: 119 ALEADGSNRMRALLDTLSDKAKNIVILRVFNGLSAEETAEIVGSTPGAVRVAQHRALAQL 178 Query: 181 KTEIMA 186 + + A Sbjct: 179 RKTLQA 184 >tr|Q8NSR8|Q8NSR8_CORGL Tax_Id=1718 (sigD)SubName: Full=DNA-directed RNA polymerase specialized sigma subunits, sigma24 homologs; SubName: Full=PUTATIVE RNA POLYMERASE SIGMA FACTOR, ECF family;[Corynebacterium glutamicum] Length = 188 Score = 163 bits (413), Expect = 9e-39 Identities = 91/184 (49%), Positives = 119/184 (64%), Gaps = 2/184 (1%) Query: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 M + L +V +A AGDR AL+ ++EII PI++RY RARIG + +A+DVAQE+C Sbjct: 1 MADTERELADLVPQATAGDRRALQRIMEIIHPIVLRYARARIGGGRQP--TAEDVAQEIC 58 Query: 61 LAAITALPRYRDQGRPFLAFVYGIXXXXXXXXXXXXXXXXXEPTDVVPERFSLDAGPEQS 120 LA T++ + DQGRPF+AFVYGI P + VPE PE Sbjct: 59 LAVATSIRNFVDQGRPFMAFVYGIASNKVADAHRAMSRDKSTPIEEVPETSPDTFTPEDF 118 Query: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 A+ S+ S R+ +LL +L EK R+ILILRV+VG+SAEETAE VGST GAVRVAQHRAL L Sbjct: 119 ALVSDGSNRVRELLDLLSEKARDILILRVIVGLSAEETAEMVGSTPGAVRVAQHRALTTL 178 Query: 181 KTEI 184 ++ + Sbjct: 179 RSTL 182 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.319 0.133 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 1,189,937,296 Number of extensions: 38521642 Number of successful extensions: 120965 Number of sequences better than 10.0: 3964 Number of HSP's gapped: 121639 Number of HSP's successfully gapped: 3985 Length of query: 192 Length of database: 4,236,830,644 Length adjustment: 130 Effective length of query: 62 Effective length of database: 2,610,808,324 Effective search space: 161870116088 Effective search space used: 161870116088 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 77 (34.3 bits)