BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_1666 (304 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0QT05|A0QT05_MYCS2 Tax_Id=246196 SubName: Full=RNA polymeras... 527 e-148 tr|D5PCS4|D5PCS4_9MYCO Tax_Id=525368 (sigJ)SubName: Full=RNA pol... 383 e-104 tr|A0QKK2|A0QKK2_MYCA1 Tax_Id=243243 SubName: Full=RNA polymeras... 380 e-103 tr|Q1BCP9|Q1BCP9_MYCSS Tax_Id=164756 SubName: Full=RNA polymeras... 367 1e-99 tr|A1UC94|A1UC94_MYCSK Tax_Id=189918 SubName: Full=RNA polymeras... 367 1e-99 tr|A3PVX5|A3PVX5_MYCSJ Tax_Id=164757 SubName: Full=RNA polymeras... 366 2e-99 tr|D5XZ04|D5XZ04_MYCTU Tax_Id=515617 SubName: Full=Alternative R... 359 3e-97 tr|A2VPC6|A2VPC6_MYCTU Tax_Id=348776 SubName: Full=Alternative R... 359 3e-97 tr|Q7TWQ0|Q7TWQ0_MYCBO Tax_Id=1765 (sigJ)SubName: Full=PROBABLE ... 357 1e-96 tr|C1AHE5|C1AHE5_MYCBT Tax_Id=561275 (sigJ)SubName: Full=RNA pol... 357 1e-96 tr|A5WSP6|A5WSP6_MYCTF Tax_Id=336982 SubName: Full=Alternative R... 357 1e-96 tr|A1KP19|A1KP19_MYCBP Tax_Id=410289 (sigJ)SubName: Full=Probabl... 357 1e-96 tr|D6FRN6|D6FRN6_MYCTU Tax_Id=611304 SubName: Full=Alternative R... 357 1e-96 tr|D6FLN8|D6FLN8_MYCTU Tax_Id=611303 SubName: Full=Alternative R... 357 1e-96 tr|D6FA90|D6FA90_MYCTU Tax_Id=611302 SubName: Full=Alternative R... 357 1e-96 tr|D5Z8H6|D5Z8H6_MYCTU Tax_Id=537209 SubName: Full=Putative unch... 357 1e-96 tr|D5YWT3|D5YWT3_MYCTU Tax_Id=515616 SubName: Full=Alternative R... 357 1e-96 tr|D5YJU9|D5YJU9_MYCTU Tax_Id=520140 SubName: Full=Alternative R... 357 1e-96 tr|A4KLM5|A4KLM5_MYCTU Tax_Id=395095 SubName: Full=Alternative R... 357 1e-96 tr|O53378|O53378_MYCTU Tax_Id=1773 (sigJ)SubName: Full=PROBABLE ... 355 5e-96 tr|A5U803|A5U803_MYCTA Tax_Id=419947 (sigJ)SubName: Full=RNA pol... 355 5e-96 tr|Q73UC2|Q73UC2_MYCPA Tax_Id=1770 (sigJ)SubName: Full=SigJ;[Myc... 351 8e-95 tr|A1T5F5|A1T5F5_MYCVP Tax_Id=350058 SubName: Full=RNA polymeras... 351 8e-95 tr|A4TEV7|A4TEV7_MYCGI Tax_Id=350054 SubName: Full=RNA polymeras... 350 2e-94 tr|B2HDT8|B2HDT8_MYCMM Tax_Id=216594 (sigJ)SubName: Full=Alterna... 347 8e-94 tr|B1MG07|B1MG07_MYCA9 Tax_Id=561007 SubName: Full=Probable alte... 344 9e-93 tr|Q8VJ29|Q8VJ29_MYCTU Tax_Id=1773 SubName: Full=RNA polymerase ... 314 8e-84 tr|D5Y8S0|D5Y8S0_MYCTU Tax_Id=520141 SubName: Full=Alternative R... 314 8e-84 tr|D5ZLL1|D5ZLL1_MYCTU Tax_Id=537210 SubName: Full=Alternative R... 292 4e-77 tr|Q0S6W4|Q0S6W4_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,... 256 3e-66 tr|C1ATJ1|C1ATJ1_RHOOB Tax_Id=632772 (sigJ)SubName: Full=RNA pol... 254 1e-65 tr|D5PXZ0|D5PXZ0_COREQ Tax_Id=525370 SubName: Full=RNA polymeras... 250 2e-64 tr|C5BWK2|C5BWK2_BEUC1 Tax_Id=471853 SubName: Full=RNA polymeras... 248 7e-64 tr|C0ZMV7|C0ZMV7_RHOE4 Tax_Id=234621 (sigJ)SubName: Full=Putativ... 237 1e-60 tr|C3JE23|C3JE23_RHOER Tax_Id=596309 SubName: Full=RNA polymeras... 237 1e-60 tr|Q6XAT1|Q6XAT1_9NOCA Tax_Id=227347 (aryS)SubName: Full=Putativ... 233 3e-59 tr|A4F9V2|A4F9V2_SACEN Tax_Id=405948 (sigJ)SubName: Full=RNA pol... 225 5e-57 tr|C6WRH4|C6WRH4_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras... 206 4e-51 tr|D2BAH7|D2BAH7_STRRD Tax_Id=479432 SubName: Full=RNA polymeras... 159 3e-37 tr|D3FDF0|D3FDF0_CONWI Tax_Id=469383 SubName: Full=RNA polymeras... 158 7e-37 tr|Q2J9Z9|Q2J9Z9_FRASC Tax_Id=106370 SubName: Full=Sigma-24;[Fra... 156 3e-36 tr|D1VHP6|D1VHP6_9ACTO Tax_Id=298654 SubName: Full=RNA polymeras... 154 1e-35 tr|D3CGT4|D3CGT4_9ACTO Tax_Id=648999 SubName: Full=RNA polymeras... 154 2e-35 tr|C5TA03|C5TA03_ACIDE Tax_Id=573060 SubName: Full=RNA polymeras... 154 2e-35 tr|D3FEN5|D3FEN5_CONWI Tax_Id=469383 SubName: Full=RNA polymeras... 153 3e-35 >tr|A0QT05|A0QT05_MYCS2 Tax_Id=246196 SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium smegmatis] Length = 304 Score = 527 bits (1357), Expect = e-148 Identities = 265/304 (87%), Positives = 265/304 (87%) Query: 1 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVV 60 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVV Sbjct: 1 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVV 60 Query: 61 SRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPD 120 SRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPD Sbjct: 61 SRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPD 120 Query: 121 QRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXXXXX 180 QRVAFVLYDGFGVPFPDIADVLGV NTHNEI Sbjct: 121 QRVAFVLYDGFGVPFPDIADVLGVSAASARQLASRARRAVADAPPPVDDNTHNEIAGALM 180 Query: 181 XXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAG 240 GVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAG Sbjct: 181 AALAAGDMDGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAG 240 Query: 241 AQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPLGTA 300 AQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPLGTA Sbjct: 241 AQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPLGTA 300 Query: 301 VRRP 304 VRRP Sbjct: 301 VRRP 304 >tr|D5PCS4|D5PCS4_9MYCO Tax_Id=525368 (sigJ)SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 300 Score = 383 bits (983), Expect = e-104 Identities = 188/297 (63%), Positives = 225/297 (75%) Query: 1 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVV 60 MT A + +F++LRPHL+AVAYRLTG+ ADAED+VQEAW+RW GQ+A I +L+AWLTTVV Sbjct: 1 MTAAQQVSEFQSLRPHLMAVAYRLTGSVADAEDLVQEAWLRWEGQDAQITDLRAWLTTVV 60 Query: 61 SRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPD 120 SRLGLD+LRSAAHRRE+Y G WLPEPVVTG+DG+DPL+AVVA EDARFAAMVVLE+LSPD Sbjct: 61 SRLGLDKLRSAAHRRETYTGNWLPEPVVTGLDGSDPLSAVVAREDARFAAMVVLERLSPD 120 Query: 121 QRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXXXXX 180 QRVAFVL+DGF VPF ++ADVLG +H+E+ Sbjct: 121 QRVAFVLHDGFAVPFAEVADVLGTSEAGARQLASRARKAVAAEPPPAPDPSHDEVVGRLM 180 Query: 181 XXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAG 240 VV LLHPDVTFTGDSN KAPTA ++I G +KVARF+FGLARRYGP + Sbjct: 181 AAMAAGDLDTVVSLLHPDVTFTGDSNGKAPTAVQIIQGADKVARFMFGLARRYGPAFFTA 240 Query: 241 AQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 QL L+NGELG YT G+P +G+ ++LPRI A+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 241 NQLGLVNGELGAYTAGSPGDEGHWQMLPRILAITVRDGKVCALWDIANPDKFTGSPL 297 >tr|A0QKK2|A0QKK2_MYCA1 Tax_Id=243243 SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium avium] Length = 318 Score = 380 bits (975), Expect = e-103 Identities = 190/301 (63%), Positives = 221/301 (73%), Gaps = 3/301 (0%) Query: 1 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVV 60 MT+A + +FE+LRPHL++VAYRLTGT ADAEDIVQ+AW+RW GQ+ I +L+AWLTTVV Sbjct: 17 MTSAQQVSEFESLRPHLMSVAYRLTGTVADAEDIVQDAWLRWHGQDGAITDLRAWLTTVV 76 Query: 61 SRLGLDRLRSAAHRRESYYGEWLPEPVVTGI---DGNDPLNAVVAGEDARFAAMVVLEQL 117 SRLGLDRLRSA HRRE+Y G WLPEPVVTG+ G DPL AVVAGEDARFAAMVVLE+L Sbjct: 77 SRLGLDRLRSATHRRETYTGNWLPEPVVTGLGPHSGADPLAAVVAGEDARFAAMVVLERL 136 Query: 118 SPDQRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXX 177 SPDQRVAFVL+DGF VPF ++A+VLG +H+E+ Sbjct: 137 SPDQRVAFVLHDGFAVPFSEVAEVLGTSEAAARQLASRARKVVSAQPPPEPDPSHDEVVG 196 Query: 178 XXXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNW 237 VV LLHPDV FTGDSN KAPTA +VIHG +KV RF+ GLARRYGP + Sbjct: 197 QLMAAMAAGNLEAVVALLHPDVMFTGDSNGKAPTAVQVIHGADKVVRFMLGLARRYGPGF 256 Query: 238 LAGAQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 + QL L+NGELG YT G P GDGY E+ PRI AMTVR+GKVCA+WD+ANPDKFTGSPL Sbjct: 257 YSAYQLGLVNGELGIYTAGLPGGDGYREMCPRIMAMTVREGKVCALWDIANPDKFTGSPL 316 Query: 298 G 298 G Sbjct: 317 G 317 >tr|Q1BCP9|Q1BCP9_MYCSS Tax_Id=164756 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 307 Score = 367 bits (942), Expect = 1e-99 Identities = 187/306 (61%), Positives = 223/306 (72%), Gaps = 3/306 (0%) Query: 1 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRW--AGQE-APIENLQAWLT 57 MT +AR D+FE+LRP+LL+V YRLTG+ ADAED VQ+AW+RW G++ + I +L+AWLT Sbjct: 1 MTASARIDEFESLRPYLLSVGYRLTGSVADAEDAVQDAWLRWDALGEDWSGIADLRAWLT 60 Query: 58 TVVSRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQL 117 TVVSR+GLDRLRSAA RRE+Y GEWLPEPVVTG+D DPL+AVVA EDARFAAMVVL++L Sbjct: 61 TVVSRIGLDRLRSAARRRETYVGEWLPEPVVTGLDRTDPLSAVVAAEDARFAAMVVLDRL 120 Query: 118 SPDQRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXX 177 +PDQRVAFVL+DGF V F +IA VLGV +H+E+ Sbjct: 121 TPDQRVAFVLHDGFAVSFTEIAGVLGVNPAAARQLASRARRAVADAEAPARDPSHDEVVG 180 Query: 178 XXXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNW 237 VV LLHPDVTFTGDSNRKAPTAPRVIHG +KVARF+FGLARRYGP + Sbjct: 181 RLMAAMAAGDMAAVVELLHPDVTFTGDSNRKAPTAPRVIHGADKVARFVFGLARRYGPRF 240 Query: 238 LAGAQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 +LAL+NG+LG T G PA +P + PRI A+TVRDGKVCA+WDVANPDKFT SP+ Sbjct: 241 FEAGELALVNGDLGLCTAGLPADGEWPAMAPRIQALTVRDGKVCAIWDVANPDKFTASPM 300 Query: 298 GTAVRR 303 RR Sbjct: 301 APGRRR 306 >tr|A1UC94|A1UC94_MYCSK Tax_Id=189918 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 307 Score = 367 bits (942), Expect = 1e-99 Identities = 187/306 (61%), Positives = 223/306 (72%), Gaps = 3/306 (0%) Query: 1 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRW--AGQE-APIENLQAWLT 57 MT +AR D+FE+LRP+LL+V YRLTG+ ADAED VQ+AW+RW G++ + I +L+AWLT Sbjct: 1 MTASARIDEFESLRPYLLSVGYRLTGSVADAEDAVQDAWLRWDALGEDWSGIADLRAWLT 60 Query: 58 TVVSRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQL 117 TVVSR+GLDRLRSAA RRE+Y GEWLPEPVVTG+D DPL+AVVA EDARFAAMVVL++L Sbjct: 61 TVVSRIGLDRLRSAARRRETYVGEWLPEPVVTGLDRTDPLSAVVAAEDARFAAMVVLDRL 120 Query: 118 SPDQRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXX 177 +PDQRVAFVL+DGF V F +IA VLGV +H+E+ Sbjct: 121 TPDQRVAFVLHDGFAVSFTEIAGVLGVNPAAARQLASRARRAVADAEAPARDPSHDEVVG 180 Query: 178 XXXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNW 237 VV LLHPDVTFTGDSNRKAPTAPRVIHG +KVARF+FGLARRYGP + Sbjct: 181 RLMAAMAAGDMAAVVELLHPDVTFTGDSNRKAPTAPRVIHGADKVARFVFGLARRYGPRF 240 Query: 238 LAGAQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 +LAL+NG+LG T G PA +P + PRI A+TVRDGKVCA+WDVANPDKFT SP+ Sbjct: 241 FEAGELALVNGDLGLCTAGLPADGEWPAMAPRIQALTVRDGKVCAIWDVANPDKFTASPM 300 Query: 298 GTAVRR 303 RR Sbjct: 301 APGRRR 306 >tr|A3PVX5|A3PVX5_MYCSJ Tax_Id=164757 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 302 Score = 366 bits (939), Expect = 2e-99 Identities = 185/300 (61%), Positives = 216/300 (72%), Gaps = 3/300 (1%) Query: 1 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAG---QEAPIENLQAWLT 57 MT +AR D+FE+LRP+LL+VAYRLTG+ DAED VQ+AW+RW + I +L+AWLT Sbjct: 1 MTASARIDEFESLRPYLLSVAYRLTGSVTDAEDAVQDAWLRWDALGEDRSGIADLRAWLT 60 Query: 58 TVVSRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQL 117 TVVSR+GLDRLRSAA RRE+Y GEWLPEPVVTG D DPL+AVVA EDARFAAMVVLE+L Sbjct: 61 TVVSRIGLDRLRSAARRRETYVGEWLPEPVVTGFDRTDPLSAVVAAEDARFAAMVVLERL 120 Query: 118 SPDQRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXX 177 +PDQRVAFVL+DGF + F +IA VLGV +H+E+ Sbjct: 121 TPDQRVAFVLHDGFAMSFTEIAGVLGVNPAAARQLASRARRAVADAEAPARDPSHDEVVG 180 Query: 178 XXXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNW 237 VV LLHPDVTFTGDSNRKAPTAPRVIHG +KVARF+FGLARRYGP + Sbjct: 181 RLMAAMAAGDMAAVVELLHPDVTFTGDSNRKAPTAPRVIHGADKVARFVFGLARRYGPRF 240 Query: 238 LAGAQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 L L+NG+LG YT G PA +P + PRI A+TVRDGKVCA+WDVANPDKFT SPL Sbjct: 241 FEAGDLVLVNGDLGLYTAGLPADGEWPAMAPRIQALTVRDGKVCAIWDVANPDKFTASPL 300 >tr|D5XZ04|D5XZ04_MYCTU Tax_Id=515617 SubName: Full=Alternative RNA polymerase sigma factor sigJ;[Mycobacterium tuberculosis T92] Length = 315 Score = 359 bits (921), Expect = 3e-97 Identities = 182/298 (61%), Positives = 209/298 (70%), Gaps = 3/298 (1%) Query: 3 TAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSR 62 T+ +FEALR HL++VAYRLTGT ADAEDIVQEAW+RW Q+ I + +AWLTTVVSR Sbjct: 2 TSMEVSEFEALRQHLMSVAYRLTGTVADAEDIVQEAWLRWDSQDTVIADPRAWLTTVVSR 61 Query: 63 LGLDRLRSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQR 122 LGLD+LRSAAHRRE+Y G WLPEPVVTG+D DPL AVVA EDARFAAMVVLE+L PDQR Sbjct: 62 LGLDKLRSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQR 121 Query: 123 VAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN---THNEIXXXX 179 VAFVL+DGF VPF ++A+VLG + HNE+ Sbjct: 122 VAFVLHDGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDPAHNEVVGRL 181 Query: 180 XXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLA 239 VV LLHPDVTFTGDSN KAPTA R + G +KV RF+ GL +RYGP Sbjct: 182 MAAMAAGDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRFILGLVQRYGPGLFG 241 Query: 240 GAQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 QLAL+NGELG YT G P DGY + PRITA+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 242 ANQLALVNGELGAYTAGLPGVDGYRAMAPRITAITVRDGKVCALWDIANPDKFTGSPL 299 >tr|A2VPC6|A2VPC6_MYCTU Tax_Id=348776 SubName: Full=Alternative RNA polymerase sigma factor sigJ;[Mycobacterium tuberculosis C] Length = 315 Score = 359 bits (921), Expect = 3e-97 Identities = 182/298 (61%), Positives = 209/298 (70%), Gaps = 3/298 (1%) Query: 3 TAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSR 62 T+ +FEALR HL++VAYRLTGT ADAEDIVQEAW+RW Q+ I + +AWLTTVVSR Sbjct: 2 TSMEVSEFEALRQHLMSVAYRLTGTVADAEDIVQEAWLRWDSQDTVIADPRAWLTTVVSR 61 Query: 63 LGLDRLRSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQR 122 LGLD+LRSAAHRRE+Y G WLPEPVVTG+D DPL AVVA EDARFAAMVVLE+L PDQR Sbjct: 62 LGLDKLRSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQR 121 Query: 123 VAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN---THNEIXXXX 179 VAFVL+DGF VPF ++A+VLG + HNE+ Sbjct: 122 VAFVLHDGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDPAHNEVVGRL 181 Query: 180 XXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLA 239 VV LLHPDVTFTGDSN KAPTA R + G +KV RF+ GL +RYGP Sbjct: 182 MAAMAAGDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRFILGLVQRYGPGLFG 241 Query: 240 GAQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 QLAL+NGELG YT G P DGY + PRITA+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 242 ANQLALVNGELGAYTAGLPGVDGYRAMAPRITAITVRDGKVCALWDIANPDKFTGSPL 299 >tr|Q7TWQ0|Q7TWQ0_MYCBO Tax_Id=1765 (sigJ)SubName: Full=PROBABLE ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGJ;[Mycobacterium bovis] Length = 312 Score = 357 bits (916), Expect = 1e-96 Identities = 181/292 (61%), Positives = 207/292 (70%), Gaps = 3/292 (1%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRL 68 +FEALR HL++VAYRLTGT ADAEDIVQEAW+RW Q+ I + +AWLTTVVSRLGLD+L Sbjct: 5 EFEALRQHLMSVAYRLTGTVADAEDIVQEAWLRWDSQDTVIADPRAWLTTVVSRLGLDKL 64 Query: 69 RSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLY 128 RSAAHRRE+Y G WLPEPVVTG+D DPL AVVA EDARFAAMVVLE+L PDQRVAFVL+ Sbjct: 65 RSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLH 124 Query: 129 DGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN---THNEIXXXXXXXXXX 185 DGF VPF ++A+VLG + HNE+ Sbjct: 125 DGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDPAHNEVVGRLMAAMAA 184 Query: 186 XXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLAL 245 VV LLHPDVTFTGDSN KAPTA R + G +KV RF+ GL +RYGP QLAL Sbjct: 185 GDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRFILGLVQRYGPGLFGANQLAL 244 Query: 246 INGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 +NGELG YT G P DGY + PRITA+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 245 VNGELGAYTAGLPGVDGYRAMAPRITAITVRDGKVCALWDIANPDKFTGSPL 296 >tr|C1AHE5|C1AHE5_MYCBT Tax_Id=561275 (sigJ)SubName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 312 Score = 357 bits (916), Expect = 1e-96 Identities = 181/292 (61%), Positives = 207/292 (70%), Gaps = 3/292 (1%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRL 68 +FEALR HL++VAYRLTGT ADAEDIVQEAW+RW Q+ I + +AWLTTVVSRLGLD+L Sbjct: 5 EFEALRQHLMSVAYRLTGTVADAEDIVQEAWLRWDSQDTVIADPRAWLTTVVSRLGLDKL 64 Query: 69 RSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLY 128 RSAAHRRE+Y G WLPEPVVTG+D DPL AVVA EDARFAAMVVLE+L PDQRVAFVL+ Sbjct: 65 RSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLH 124 Query: 129 DGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN---THNEIXXXXXXXXXX 185 DGF VPF ++A+VLG + HNE+ Sbjct: 125 DGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDPAHNEVVGRLMAAMAA 184 Query: 186 XXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLAL 245 VV LLHPDVTFTGDSN KAPTA R + G +KV RF+ GL +RYGP QLAL Sbjct: 185 GDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRFILGLVQRYGPGLFGANQLAL 244 Query: 246 INGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 +NGELG YT G P DGY + PRITA+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 245 VNGELGAYTAGLPGVDGYRAMAPRITAITVRDGKVCALWDIANPDKFTGSPL 296 >tr|A5WSP6|A5WSP6_MYCTF Tax_Id=336982 SubName: Full=Alternative RNA polymerase sigma factor sigJ;[Mycobacterium tuberculosis] Length = 312 Score = 357 bits (916), Expect = 1e-96 Identities = 181/292 (61%), Positives = 207/292 (70%), Gaps = 3/292 (1%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRL 68 +FEALR HL++VAYRLTGT ADAEDIVQEAW+RW Q+ I + +AWLTTVVSRLGLD+L Sbjct: 5 EFEALRQHLMSVAYRLTGTVADAEDIVQEAWLRWDSQDTVIADPRAWLTTVVSRLGLDKL 64 Query: 69 RSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLY 128 RSAAHRRE+Y G WLPEPVVTG+D DPL AVVA EDARFAAMVVLE+L PDQRVAFVL+ Sbjct: 65 RSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLH 124 Query: 129 DGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN---THNEIXXXXXXXXXX 185 DGF VPF ++A+VLG + HNE+ Sbjct: 125 DGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDPAHNEVVGRLMAAMAA 184 Query: 186 XXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLAL 245 VV LLHPDVTFTGDSN KAPTA R + G +KV RF+ GL +RYGP QLAL Sbjct: 185 GDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRFILGLVQRYGPGLFGANQLAL 244 Query: 246 INGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 +NGELG YT G P DGY + PRITA+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 245 VNGELGAYTAGLPGVDGYRAMAPRITAITVRDGKVCALWDIANPDKFTGSPL 296 >tr|A1KP19|A1KP19_MYCBP Tax_Id=410289 (sigJ)SubName: Full=Probable alternative RNA polymerase sigma factor sigJ;[Mycobacterium bovis] Length = 312 Score = 357 bits (916), Expect = 1e-96 Identities = 181/292 (61%), Positives = 207/292 (70%), Gaps = 3/292 (1%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRL 68 +FEALR HL++VAYRLTGT ADAEDIVQEAW+RW Q+ I + +AWLTTVVSRLGLD+L Sbjct: 5 EFEALRQHLMSVAYRLTGTVADAEDIVQEAWLRWDSQDTVIADPRAWLTTVVSRLGLDKL 64 Query: 69 RSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLY 128 RSAAHRRE+Y G WLPEPVVTG+D DPL AVVA EDARFAAMVVLE+L PDQRVAFVL+ Sbjct: 65 RSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLH 124 Query: 129 DGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN---THNEIXXXXXXXXXX 185 DGF VPF ++A+VLG + HNE+ Sbjct: 125 DGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDPAHNEVVGRLMAAMAA 184 Query: 186 XXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLAL 245 VV LLHPDVTFTGDSN KAPTA R + G +KV RF+ GL +RYGP QLAL Sbjct: 185 GDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRFILGLVQRYGPGLFGANQLAL 244 Query: 246 INGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 +NGELG YT G P DGY + PRITA+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 245 VNGELGAYTAGLPGVDGYRAMAPRITAITVRDGKVCALWDIANPDKFTGSPL 296 >tr|D6FRN6|D6FRN6_MYCTU Tax_Id=611304 SubName: Full=Alternative RNA polymerase sigma factor sigJ;[Mycobacterium tuberculosis K85] Length = 312 Score = 357 bits (916), Expect = 1e-96 Identities = 181/292 (61%), Positives = 207/292 (70%), Gaps = 3/292 (1%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRL 68 +FEALR HL++VAYRLTGT ADAEDIVQEAW+RW Q+ I + +AWLTTVVSRLGLD+L Sbjct: 5 EFEALRQHLMSVAYRLTGTVADAEDIVQEAWLRWDSQDTVIADPRAWLTTVVSRLGLDKL 64 Query: 69 RSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLY 128 RSAAHRRE+Y G WLPEPVVTG+D DPL AVVA EDARFAAMVVLE+L PDQRVAFVL+ Sbjct: 65 RSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLH 124 Query: 129 DGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN---THNEIXXXXXXXXXX 185 DGF VPF ++A+VLG + HNE+ Sbjct: 125 DGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDPAHNEVVGRLMAAMAA 184 Query: 186 XXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLAL 245 VV LLHPDVTFTGDSN KAPTA R + G +KV RF+ GL +RYGP QLAL Sbjct: 185 GDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRFILGLVQRYGPGLFGANQLAL 244 Query: 246 INGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 +NGELG YT G P DGY + PRITA+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 245 VNGELGAYTAGLPGVDGYRAMAPRITAITVRDGKVCALWDIANPDKFTGSPL 296 >tr|D6FLN8|D6FLN8_MYCTU Tax_Id=611303 SubName: Full=Alternative RNA polymerase sigma factor sigJ;[Mycobacterium tuberculosis CPHL_A] Length = 312 Score = 357 bits (916), Expect = 1e-96 Identities = 181/292 (61%), Positives = 207/292 (70%), Gaps = 3/292 (1%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRL 68 +FEALR HL++VAYRLTGT ADAEDIVQEAW+RW Q+ I + +AWLTTVVSRLGLD+L Sbjct: 5 EFEALRQHLMSVAYRLTGTVADAEDIVQEAWLRWDSQDTVIADPRAWLTTVVSRLGLDKL 64 Query: 69 RSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLY 128 RSAAHRRE+Y G WLPEPVVTG+D DPL AVVA EDARFAAMVVLE+L PDQRVAFVL+ Sbjct: 65 RSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLH 124 Query: 129 DGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN---THNEIXXXXXXXXXX 185 DGF VPF ++A+VLG + HNE+ Sbjct: 125 DGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDPAHNEVVGRLMAAMAA 184 Query: 186 XXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLAL 245 VV LLHPDVTFTGDSN KAPTA R + G +KV RF+ GL +RYGP QLAL Sbjct: 185 GDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRFILGLVQRYGPGLFGANQLAL 244 Query: 246 INGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 +NGELG YT G P DGY + PRITA+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 245 VNGELGAYTAGLPGVDGYRAMAPRITAITVRDGKVCALWDIANPDKFTGSPL 296 >tr|D6FA90|D6FA90_MYCTU Tax_Id=611302 SubName: Full=Alternative RNA polymerase sigma factor sigJ;[Mycobacterium tuberculosis T46] Length = 312 Score = 357 bits (916), Expect = 1e-96 Identities = 181/292 (61%), Positives = 207/292 (70%), Gaps = 3/292 (1%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRL 68 +FEALR HL++VAYRLTGT ADAEDIVQEAW+RW Q+ I + +AWLTTVVSRLGLD+L Sbjct: 5 EFEALRQHLMSVAYRLTGTVADAEDIVQEAWLRWDSQDTVIADPRAWLTTVVSRLGLDKL 64 Query: 69 RSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLY 128 RSAAHRRE+Y G WLPEPVVTG+D DPL AVVA EDARFAAMVVLE+L PDQRVAFVL+ Sbjct: 65 RSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLH 124 Query: 129 DGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN---THNEIXXXXXXXXXX 185 DGF VPF ++A+VLG + HNE+ Sbjct: 125 DGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDPAHNEVVGRLMAAMAA 184 Query: 186 XXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLAL 245 VV LLHPDVTFTGDSN KAPTA R + G +KV RF+ GL +RYGP QLAL Sbjct: 185 GDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRFILGLVQRYGPGLFGANQLAL 244 Query: 246 INGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 +NGELG YT G P DGY + PRITA+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 245 VNGELGAYTAGLPGVDGYRAMAPRITAITVRDGKVCALWDIANPDKFTGSPL 296 >tr|D5Z8H6|D5Z8H6_MYCTU Tax_Id=537209 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis GM 1503] Length = 312 Score = 357 bits (916), Expect = 1e-96 Identities = 181/292 (61%), Positives = 207/292 (70%), Gaps = 3/292 (1%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRL 68 +FEALR HL++VAYRLTGT ADAEDIVQEAW+RW Q+ I + +AWLTTVVSRLGLD+L Sbjct: 5 EFEALRQHLMSVAYRLTGTVADAEDIVQEAWLRWDSQDTVIADPRAWLTTVVSRLGLDKL 64 Query: 69 RSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLY 128 RSAAHRRE+Y G WLPEPVVTG+D DPL AVVA EDARFAAMVVLE+L PDQRVAFVL+ Sbjct: 65 RSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLH 124 Query: 129 DGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN---THNEIXXXXXXXXXX 185 DGF VPF ++A+VLG + HNE+ Sbjct: 125 DGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDPAHNEVVGRLMAAMAA 184 Query: 186 XXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLAL 245 VV LLHPDVTFTGDSN KAPTA R + G +KV RF+ GL +RYGP QLAL Sbjct: 185 GDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRFILGLVQRYGPGLFGANQLAL 244 Query: 246 INGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 +NGELG YT G P DGY + PRITA+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 245 VNGELGAYTAGLPGVDGYRAMAPRITAITVRDGKVCALWDIANPDKFTGSPL 296 >tr|D5YWT3|D5YWT3_MYCTU Tax_Id=515616 SubName: Full=Alternative RNA polymerase sigma factor sigJ;[Mycobacterium tuberculosis 02_1987] Length = 312 Score = 357 bits (916), Expect = 1e-96 Identities = 181/292 (61%), Positives = 207/292 (70%), Gaps = 3/292 (1%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRL 68 +FEALR HL++VAYRLTGT ADAEDIVQEAW+RW Q+ I + +AWLTTVVSRLGLD+L Sbjct: 5 EFEALRQHLMSVAYRLTGTVADAEDIVQEAWLRWDSQDTVIADPRAWLTTVVSRLGLDKL 64 Query: 69 RSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLY 128 RSAAHRRE+Y G WLPEPVVTG+D DPL AVVA EDARFAAMVVLE+L PDQRVAFVL+ Sbjct: 65 RSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLH 124 Query: 129 DGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN---THNEIXXXXXXXXXX 185 DGF VPF ++A+VLG + HNE+ Sbjct: 125 DGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDPAHNEVVGRLMAAMAA 184 Query: 186 XXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLAL 245 VV LLHPDVTFTGDSN KAPTA R + G +KV RF+ GL +RYGP QLAL Sbjct: 185 GDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRFILGLVQRYGPGLFGANQLAL 244 Query: 246 INGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 +NGELG YT G P DGY + PRITA+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 245 VNGELGAYTAGLPGVDGYRAMAPRITAITVRDGKVCALWDIANPDKFTGSPL 296 >tr|D5YJU9|D5YJU9_MYCTU Tax_Id=520140 SubName: Full=Alternative RNA polymerase sigma factor sigJ;[Mycobacterium tuberculosis EAS054] Length = 312 Score = 357 bits (916), Expect = 1e-96 Identities = 181/292 (61%), Positives = 207/292 (70%), Gaps = 3/292 (1%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRL 68 +FEALR HL++VAYRLTGT ADAEDIVQEAW+RW Q+ I + +AWLTTVVSRLGLD+L Sbjct: 5 EFEALRQHLMSVAYRLTGTVADAEDIVQEAWLRWDSQDTVIADPRAWLTTVVSRLGLDKL 64 Query: 69 RSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLY 128 RSAAHRRE+Y G WLPEPVVTG+D DPL AVVA EDARFAAMVVLE+L PDQRVAFVL+ Sbjct: 65 RSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLH 124 Query: 129 DGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN---THNEIXXXXXXXXXX 185 DGF VPF ++A+VLG + HNE+ Sbjct: 125 DGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDPAHNEVVGRLMAAMAA 184 Query: 186 XXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLAL 245 VV LLHPDVTFTGDSN KAPTA R + G +KV RF+ GL +RYGP QLAL Sbjct: 185 GDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRFILGLVQRYGPGLFGANQLAL 244 Query: 246 INGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 +NGELG YT G P DGY + PRITA+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 245 VNGELGAYTAGLPGVDGYRAMAPRITAITVRDGKVCALWDIANPDKFTGSPL 296 >tr|A4KLM5|A4KLM5_MYCTU Tax_Id=395095 SubName: Full=Alternative RNA polymerase sigma factor sigJ;[Mycobacterium tuberculosis str. Haarlem] Length = 312 Score = 357 bits (916), Expect = 1e-96 Identities = 181/292 (61%), Positives = 207/292 (70%), Gaps = 3/292 (1%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRL 68 +FEALR HL++VAYRLTGT ADAEDIVQEAW+RW Q+ I + +AWLTTVVSRLGLD+L Sbjct: 5 EFEALRQHLMSVAYRLTGTVADAEDIVQEAWLRWDSQDTVIADPRAWLTTVVSRLGLDKL 64 Query: 69 RSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLY 128 RSAAHRRE+Y G WLPEPVVTG+D DPL AVVA EDARFAAMVVLE+L PDQRVAFVL+ Sbjct: 65 RSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLH 124 Query: 129 DGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN---THNEIXXXXXXXXXX 185 DGF VPF ++A+VLG + HNE+ Sbjct: 125 DGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDPAHNEVVGRLMAAMAA 184 Query: 186 XXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLAL 245 VV LLHPDVTFTGDSN KAPTA R + G +KV RF+ GL +RYGP QLAL Sbjct: 185 GDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRFILGLVQRYGPGLFGANQLAL 244 Query: 246 INGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 +NGELG YT G P DGY + PRITA+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 245 VNGELGAYTAGLPGVDGYRAMAPRITAITVRDGKVCALWDIANPDKFTGSPL 296 >tr|O53378|O53378_MYCTU Tax_Id=1773 (sigJ)SubName: Full=PROBABLE ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGJ;[Mycobacterium tuberculosis] Length = 312 Score = 355 bits (910), Expect = 5e-96 Identities = 180/292 (61%), Positives = 206/292 (70%), Gaps = 3/292 (1%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRL 68 +FEALR HL++VAYRLTGT ADAEDIVQEAW+RW + I + +AWLTTVVSRLGLD+L Sbjct: 5 EFEALRQHLMSVAYRLTGTVADAEDIVQEAWLRWDSPDTVIADPRAWLTTVVSRLGLDKL 64 Query: 69 RSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLY 128 RSAAHRRE+Y G WLPEPVVTG+D DPL AVVA EDARFAAMVVLE+L PDQRVAFVL+ Sbjct: 65 RSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLH 124 Query: 129 DGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN---THNEIXXXXXXXXXX 185 DGF VPF ++A+VLG + HNE+ Sbjct: 125 DGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDPAHNEVVGRLMAAMAA 184 Query: 186 XXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLAL 245 VV LLHPDVTFTGDSN KAPTA R + G +KV RF+ GL +RYGP QLAL Sbjct: 185 GDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRFILGLVQRYGPGLFGANQLAL 244 Query: 246 INGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 +NGELG YT G P DGY + PRITA+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 245 VNGELGAYTAGLPGVDGYRAMAPRITAITVRDGKVCALWDIANPDKFTGSPL 296 >tr|A5U803|A5U803_MYCTA Tax_Id=419947 (sigJ)SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium tuberculosis] Length = 312 Score = 355 bits (910), Expect = 5e-96 Identities = 180/292 (61%), Positives = 206/292 (70%), Gaps = 3/292 (1%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRL 68 +FEALR HL++VAYRLTGT ADAEDIVQEAW+RW + I + +AWLTTVVSRLGLD+L Sbjct: 5 EFEALRQHLMSVAYRLTGTVADAEDIVQEAWLRWDSPDTVIADPRAWLTTVVSRLGLDKL 64 Query: 69 RSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLY 128 RSAAHRRE+Y G WLPEPVVTG+D DPL AVVA EDARFAAMVVLE+L PDQRVAFVL+ Sbjct: 65 RSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLH 124 Query: 129 DGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN---THNEIXXXXXXXXXX 185 DGF VPF ++A+VLG + HNE+ Sbjct: 125 DGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDPAHNEVVGRLMAAMAA 184 Query: 186 XXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLAL 245 VV LLHPDVTFTGDSN KAPTA R + G +KV RF+ GL +RYGP QLAL Sbjct: 185 GDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRFILGLVQRYGPGLFGANQLAL 244 Query: 246 INGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 +NGELG YT G P DGY + PRITA+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 245 VNGELGAYTAGLPGVDGYRAMAPRITAITVRDGKVCALWDIANPDKFTGSPL 296 >tr|Q73UC2|Q73UC2_MYCPA Tax_Id=1770 (sigJ)SubName: Full=SigJ;[Mycobacterium paratuberculosis] Length = 295 Score = 351 bits (900), Expect = 8e-95 Identities = 179/285 (62%), Positives = 206/285 (72%), Gaps = 3/285 (1%) Query: 17 LLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRLRSAAHRRE 76 L++VAYRLTGT ADAEDIVQ+AW+R GQ+ I +L+AWLTTVVSRLGLDRLRSA HRRE Sbjct: 10 LMSVAYRLTGTVADAEDIVQDAWLRRHGQDGAITDLRAWLTTVVSRLGLDRLRSATHRRE 69 Query: 77 SYYGEWLPEPVVTGI---DGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLYDGFGV 133 +Y G WLPEPVVTG+ G DPL AVVAGEDARFAAMVVLE+LSPDQRVAFVL+DGF V Sbjct: 70 TYTGNWLPEPVVTGLGPHSGADPLAAVVAGEDARFAAMVVLERLSPDQRVAFVLHDGFAV 129 Query: 134 PFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXXXXXXXXXXXXXXGVVR 193 PF ++A+VLG +H+E+ VV Sbjct: 130 PFSEVAEVLGTSEAAARQLASRARKVVSAQPPPEPDPSHDEVVGQLMAAMAAGNLEAVVA 189 Query: 194 LLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLALINGELGTY 253 LLHPDV FTGDSN KAPTA +VIHG +KV RF+ GLARRYGP + + QL L+NGELG Y Sbjct: 190 LLHPDVMFTGDSNGKAPTAVQVIHGADKVVRFMLGLARRYGPGFYSAYQLGLVNGELGIY 249 Query: 254 TPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPLG 298 T G P GDGY E+ PRI AMTVR+ KVCA+WD+ANPDKFTGSPLG Sbjct: 250 TAGLPGGDGYREMCPRIMAMTVRERKVCALWDIANPDKFTGSPLG 294 >tr|A1T5F5|A1T5F5_MYCVP Tax_Id=350058 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium vanbaalenii] Length = 298 Score = 351 bits (900), Expect = 8e-95 Identities = 186/299 (62%), Positives = 214/299 (71%), Gaps = 4/299 (1%) Query: 1 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAP-IENLQAWLTTV 59 MTT+AR +FE LRPHLL+VAYRLTGT ADAEDIVQ+AW+RW A IE+L+AWLTTV Sbjct: 1 MTTSARVGEFEQLRPHLLSVAYRLTGTLADAEDIVQDAWLRWEANSATVIEDLKAWLTTV 60 Query: 60 VSRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSP 119 VSRL LDRLRSAAHRRE+Y GEWLPEPVVTG DG DPL +VVAGEDARFAAMVVLE L+P Sbjct: 61 VSRLALDRLRSAAHRRETYVGEWLPEPVVTGFDGVDPLASVVAGEDARFAAMVVLENLTP 120 Query: 120 DQRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXXXX 179 DQRVAFVL+DGF VPF +IA+VLG + H E+ Sbjct: 121 DQRVAFVLHDGFAVPFAEIAEVLG--SSPESARQLASRARRAASAAPPPADEHAEVVGKL 178 Query: 180 XXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLA 239 VV +LHPDVTFTGDSNR+APTA RVIHG +KVARFL GLARRYG Sbjct: 179 LAAMASGDLTEVVAVLHPDVTFTGDSNRRAPTAARVIHGSDKVARFLLGLARRYGEQRFF 238 Query: 240 GA-QLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 G+ L ++NGELG YT GAPA + P + PRI A+TV G+V A++D+ANPDKFT SPL Sbjct: 239 GSGVLGMVNGELGVYTMGAPATEDAPAIAPRIQALTVHRGQVVAIYDIANPDKFTASPL 297 >tr|A4TEV7|A4TEV7_MYCGI Tax_Id=350054 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium gilvum] Length = 309 Score = 350 bits (897), Expect = 2e-94 Identities = 183/299 (61%), Positives = 214/299 (71%), Gaps = 4/299 (1%) Query: 1 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQE-APIENLQAWLTTV 59 MT +AR +FE +RPHLL+VAYRLTGT ADAEDIVQ+AW+RW+ A +E+L+AWLTTV Sbjct: 11 MTASARVAEFEQMRPHLLSVAYRLTGTVADAEDIVQDAWLRWSTHRGAAVEDLKAWLTTV 70 Query: 60 VSRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSP 119 VSRL LD+LRSAAHRRE+Y GEWLPEPVVTG+DG DPL+A+VA EDARFAAMVVLE L+P Sbjct: 71 VSRLALDKLRSAAHRRETYVGEWLPEPVVTGLDGRDPLSALVADEDARFAAMVVLENLTP 130 Query: 120 DQRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXXXX 179 DQRVAFVL+DGF VPF IA+VLG H E+ Sbjct: 131 DQRVAFVLHDGFAVPFSAIAEVLGTSTQAARQLASRARRAVSSAPPPAA--DHAEVVGKL 188 Query: 180 XXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGP-NWL 238 VV LLHPDVTFTGDSNR+APTA RVI G +KVARFL GL +YGP L Sbjct: 189 LAAMASGDLTAVVSLLHPDVTFTGDSNRRAPTAARVIRGSDKVARFLLGLGAKYGPERLL 248 Query: 239 AGAQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 AG++L L+NGELG Y+PGA A P ++PRI A+ VRDG V A++DVANPDKFT SPL Sbjct: 249 AGSELGLVNGELGVYSPGADATPDAPRIMPRIQALAVRDGLVVAIYDVANPDKFTASPL 307 >tr|B2HDT8|B2HDT8_MYCMM Tax_Id=216594 (sigJ)SubName: Full=Alternative RNA polymerase sigma factor SigJ;[Mycobacterium marinum] Length = 309 Score = 347 bits (891), Expect = 8e-94 Identities = 181/299 (60%), Positives = 211/299 (70%), Gaps = 5/299 (1%) Query: 4 AARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRW--AGQEAPIENLQAWLTTVVS 61 A FE+LRPHL++VAYRLTGT ADAEDIVQEAW+RW A + +L+AWLTTVVS Sbjct: 6 AQAASTFESLRPHLMSVAYRLTGTVADAEDIVQEAWLRWDAAPGRDDVADLRAWLTTVVS 65 Query: 62 RLGLDRLRSAAHRRESYYGEWLPEPVVTGID---GNDPLNAVVAGEDARFAAMVVLEQLS 118 RLGLD+LRSAA RRE+Y G WLPEPVVTG+ G DPL+AVVA EDARFA MVVLE+LS Sbjct: 66 RLGLDKLRSAARRRETYTGHWLPEPVVTGLGDAGGADPLSAVVAAEDARFAVMVVLERLS 125 Query: 119 PDQRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXXX 178 PDQRVAFVL+DGF +PF ++A V+G THNE+ Sbjct: 126 PDQRVAFVLHDGFAMPFAEVAGVIGASEAAARQLASRARKAVAAAPPPQPDPTHNEVVGR 185 Query: 179 XXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWL 238 VV LLHPDVTFTGD+N +APTA RVI G +KVARF+ GLARRYGP + Sbjct: 186 LMAAMASGDLHSVVSLLHPDVTFTGDANGRAPTAARVICGADKVARFMLGLARRYGPAFY 245 Query: 239 AGAQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 QLAL+NGELG+YT G G+ +LPRITAMTVRDGKVCA+WD+ANPDKF+GSPL Sbjct: 246 TANQLALVNGELGSYTLGTAGDGGHWAMLPRITAMTVRDGKVCALWDIANPDKFSGSPL 304 >tr|B1MG07|B1MG07_MYCA9 Tax_Id=561007 SubName: Full=Probable alternative RNA polymerase sigma factor SigJ;[Mycobacterium abscessus] Length = 302 Score = 344 bits (882), Expect = 9e-93 Identities = 176/295 (59%), Positives = 205/295 (69%) Query: 6 RTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGL 65 RTD+FEALRP L AVAYRLTG+ ADAEDIVQ+AW+R A IE+L AWLTTVVSRLGL Sbjct: 8 RTDEFEALRPRLQAVAYRLTGSVADAEDIVQDAWLRLYSTTAEIEDLAAWLTTVVSRLGL 67 Query: 66 DRLRSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAF 125 DRLRSA +RRE+Y GEWLPEPVVTG+DG+DPL A+VA EDARFAAMVVL++L+PDQRVAF Sbjct: 68 DRLRSAVYRRETYVGEWLPEPVVTGLDGDDPLAALVASEDARFAAMVVLDRLAPDQRVAF 127 Query: 126 VLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXXXXXXXXXX 185 VL+DGF VPF IAD+LG+ HNE+ Sbjct: 128 VLHDGFSVPFKQIADILGISDAAARQLASRARRMVTATPEPVADAEHNEVVGELLEALMS 187 Query: 186 XXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLAL 245 VVRLLHPDVT TGDS+ KAPTA RVIHGP+KVARFL GL RYGP AL Sbjct: 188 GSVEAVVRLLHPDVTMTGDSDGKAPTAVRVIHGPDKVARFLLGLMERYGPQMTQAINPAL 247 Query: 246 INGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPLGTA 300 +NG+ G Y + +LPR++A TVRDG+V AVWDV+NPDKF+G+PL A Sbjct: 248 VNGQFGMYLTETDTDPNFRPVLPRVSAFTVRDGRVLAVWDVSNPDKFSGTPLREA 302 >tr|Q8VJ29|Q8VJ29_MYCTU Tax_Id=1773 SubName: Full=RNA polymerase sigma factor, putative;[Mycobacterium tuberculosis] Length = 282 Score = 314 bits (805), Expect = 8e-84 Identities = 159/266 (59%), Positives = 183/266 (68%), Gaps = 3/266 (1%) Query: 35 VQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGN 94 +QEAW+RW Q+ I + +AWLTTVVSRLGLD+LRSAAHRRE+Y G WLPEPVVTG+D Sbjct: 1 MQEAWLRWDSQDTVIADPRAWLTTVVSRLGLDKLRSAAHRRETYTGTWLPEPVVTGLDAT 60 Query: 95 DPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXX 154 DPL AVVA EDARFAAMVVLE+L PDQRVAFVL+DGF VPF ++A+VLG Sbjct: 61 DPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLHDGFAVPFAEVAEVLGTSEAAARQLAS 120 Query: 155 XXXXXXXXXXXXXXXN---THNEIXXXXXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPT 211 + HNE+ VV LLHPDVTFTGDSN KAPT Sbjct: 121 RARKAVTAQPALISGDPDPAHNEVVGRLMAAMAAGDLDTVVSLLHPDVTFTGDSNGKAPT 180 Query: 212 APRVIHGPEKVARFLFGLARRYGPNWLAGAQLALINGELGTYTPGAPAGDGYPELLPRIT 271 A R + G +KV RF+ GL +RYGP QLAL+NGELG YT G P DGY + PRIT Sbjct: 181 AVRAVRGSDKVVRFILGLVQRYGPGLFGANQLALVNGELGAYTAGLPGVDGYRAMAPRIT 240 Query: 272 AMTVRDGKVCAVWDVANPDKFTGSPL 297 A+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 241 AITVRDGKVCALWDIANPDKFTGSPL 266 >tr|D5Y8S0|D5Y8S0_MYCTU Tax_Id=520141 SubName: Full=Alternative RNA polymerase sigma factor sigJ;[Mycobacterium tuberculosis T85] Length = 282 Score = 314 bits (805), Expect = 8e-84 Identities = 159/266 (59%), Positives = 183/266 (68%), Gaps = 3/266 (1%) Query: 35 VQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGN 94 +QEAW+RW Q+ I + +AWLTTVVSRLGLD+LRSAAHRRE+Y G WLPEPVVTG+D Sbjct: 1 MQEAWLRWDSQDTVIADPRAWLTTVVSRLGLDKLRSAAHRRETYTGTWLPEPVVTGLDAT 60 Query: 95 DPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXX 154 DPL AVVA EDARFAAMVVLE+L PDQRVAFVL+DGF VPF ++A+VLG Sbjct: 61 DPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLHDGFAVPFAEVAEVLGTSEAAARQLAS 120 Query: 155 XXXXXXXXXXXXXXXN---THNEIXXXXXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPT 211 + HNE+ VV LLHPDVTFTGDSN KAPT Sbjct: 121 RARKAVTAQPALISGDPDPAHNEVVGRLMAAMAAGDLDTVVSLLHPDVTFTGDSNGKAPT 180 Query: 212 APRVIHGPEKVARFLFGLARRYGPNWLAGAQLALINGELGTYTPGAPAGDGYPELLPRIT 271 A R + G +KV RF+ GL +RYGP QLAL+NGELG YT G P DGY + PRIT Sbjct: 181 AVRAVRGSDKVVRFILGLVQRYGPGLFGANQLALVNGELGAYTAGLPGVDGYRAMAPRIT 240 Query: 272 AMTVRDGKVCAVWDVANPDKFTGSPL 297 A+TVRDGKVCA+WD+ANPDKFTGSPL Sbjct: 241 AITVRDGKVCALWDIANPDKFTGSPL 266 >tr|D5ZLL1|D5ZLL1_MYCTU Tax_Id=537210 SubName: Full=Alternative RNA polymerase sigma factor sigJ; Flags: Fragment;[Mycobacterium tuberculosis T17] Length = 259 Score = 292 bits (747), Expect = 4e-77 Identities = 151/253 (59%), Positives = 173/253 (68%), Gaps = 3/253 (1%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRL 68 +FEALR HL++VAYRLTGT ADAEDIVQEAW+RW Q+ I + +AWLTTVVSRLGLD+L Sbjct: 5 EFEALRQHLMSVAYRLTGTVADAEDIVQEAWLRWDSQDTVIADPRAWLTTVVSRLGLDKL 64 Query: 69 RSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLY 128 RSAAHRRE+Y G WLPEPVVTG+D DPL AVVA EDARFAAMVVLE+L PDQRVAFVL+ Sbjct: 65 RSAAHRRETYTGTWLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLH 124 Query: 129 DGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN---THNEIXXXXXXXXXX 185 DGF VPF ++A+VLG + HNE+ Sbjct: 125 DGFAVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDPAHNEVVGRLMAAMAA 184 Query: 186 XXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLAL 245 VV LLHPDVTFTGDSN KAPTA R + G +KV RF+ GL +RYGP QLAL Sbjct: 185 GDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRFILGLVQRYGPGLFGANQLAL 244 Query: 246 INGELGTYTPGAP 258 +NGELG YT G P Sbjct: 245 VNGELGAYTAGLP 257 >tr|Q0S6W4|Q0S6W4_RHOSR Tax_Id=101510 SubName: Full=Sigma factor, sigma 70 type, group 4 (ECF);[Rhodococcus sp.] Length = 306 Score = 256 bits (653), Expect = 3e-66 Identities = 138/298 (46%), Positives = 176/298 (59%), Gaps = 4/298 (1%) Query: 1 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAP-IENLQAWLTTV 59 M TA D+FE+ RPHLL+VAYRLTG+ +DAED VQE+W+R +A I +L+ WLTTV Sbjct: 1 MPTATLVDEFESHRPHLLSVAYRLTGSVSDAEDAVQESWLRLDDADAANIRDLRPWLTTV 60 Query: 60 VSRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGN---DPLNAVVAGEDARFAAMVVLEQ 116 V R+ LDRLRSAA RRE Y G+WLPEP+VTG+ + DPL AVV ED R AA++VL+ Sbjct: 61 VGRICLDRLRSAAVRREQYVGQWLPEPIVTGLSPSAEPDPLEAVVRDEDNRLAALIVLDT 120 Query: 117 LSPDQRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIX 176 L+P QRVAFVL+DGFGVPF ++A +LG+ + H Sbjct: 121 LTPAQRVAFVLHDGFGVPFDEVAGILGIETPAARQLASRARKAAATTTPAVPDDEHAVAV 180 Query: 177 XXXXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPN 236 V+ LHPD GD+N TA VIHG +K ARF GL +RYGP Sbjct: 181 QRLLEALAAGDLDAVIAALHPDALVIGDANGTTSTAVNVIHGADKFARFFLGLIKRYGPA 240 Query: 237 WLAGAQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTG 294 Q L+NG+LG ++ D + PR+ TVRDG V A +D+ANP+KF G Sbjct: 241 VFTVMQPVLVNGQLGFFSAALTGDDAHRSSPPRVGGFTVRDGLVYAAYDIANPEKFGG 298 >tr|C1ATJ1|C1ATJ1_RHOOB Tax_Id=632772 (sigJ)SubName: Full=RNA polymerase ECF-type sigma factor SigJ;[Rhodococcus opacus] Length = 306 Score = 254 bits (649), Expect = 1e-65 Identities = 140/298 (46%), Positives = 173/298 (58%), Gaps = 4/298 (1%) Query: 1 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWA-GQEAPIENLQAWLTTV 59 M TA D+FE+ R HLL+VAYRLTG+ +DAED VQE+W+R A I +L AWLTTV Sbjct: 1 MPTATLVDEFESHRRHLLSVAYRLTGSVSDAEDAVQESWLRLDDANAATIRDLGAWLTTV 60 Query: 60 VSRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGN---DPLNAVVAGEDARFAAMVVLEQ 116 V R+ LDRLRSAA RRE Y G+WLPEPVVTG+ + DPL AVV ED R AA++VL+ Sbjct: 61 VGRICLDRLRSAAVRREQYVGQWLPEPVVTGLSPSAEPDPLEAVVQDEDNRLAALIVLDT 120 Query: 117 LSPDQRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIX 176 L+P QRVAFVL+DGFGVPF ++A +LG+ H Sbjct: 121 LTPAQRVAFVLHDGFGVPFDEVAGILGIETPAARQLASRARKAAAATTPAVPDEEHALAV 180 Query: 177 XXXXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPN 236 VV LHPD GD+N TA VI G ++ ARF GL +RYGP Sbjct: 181 QRLLEALAGGDVDAVVAALHPDALVIGDANGTTSTAVNVIRGADRFARFFLGLVQRYGPE 240 Query: 237 WLAGAQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTG 294 QL L+NG+LG +T G D + R+ TVRDG V A +D+ANP+KF G Sbjct: 241 VFTAMQLVLVNGQLGYFTAGFTGDDAHRSSPARVGGFTVRDGLVYAAYDIANPEKFAG 298 >tr|D5PXZ0|D5PXZ0_COREQ Tax_Id=525370 SubName: Full=RNA polymerase sigma factor SigJ;[Rhodococcus equi ATCC 33707] Length = 323 Score = 250 bits (638), Expect = 2e-64 Identities = 141/299 (47%), Positives = 177/299 (59%), Gaps = 5/299 (1%) Query: 1 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAP-IENLQAWLTTV 59 M+ D FE+ R HLL+ AYRLTG+ DAED VQEAW+R A +A I++L+AWLTTV Sbjct: 1 MSAPTLADSFESHRGHLLSAAYRLTGSVTDAEDAVQEAWLRLAKSDADRIDDLRAWLTTV 60 Query: 60 VSRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGN---DPLNAVVAGEDARFAAMVVLEQ 116 V RL LDRLRSAA RRE Y G+WLPEP+VT + + DPL AVV ED R AA++VL+ Sbjct: 61 VGRLCLDRLRSAAVRREQYVGQWLPEPIVTDLTPSAMPDPLEAVVRQEDNRLAALIVLDA 120 Query: 117 LSPDQRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIX 176 L+PDQRVAFVL+DGFGVPF +IADVL V + H Sbjct: 121 LTPDQRVAFVLHDGFGVPFGEIADVLSVSVASARQLASRARRAVADAPPPVPDDEHTAAV 180 Query: 177 XXXXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPN 236 V+ LHPD GD+N TA +I G ++ ARF GLA +YG Sbjct: 181 TRLMIAMAAGDLDAVLDALHPDAITIGDANGTTRTAVNIITGADRTARFFLGLAHKYGLE 240 Query: 237 WLAGAQL-ALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTG 294 GA + AL+NG+LG + G+P D +P R+T TVRDG V A +D+ANP+K G Sbjct: 241 AFLGAAMPALVNGQLGFVSHGSPGDDIHPGFPGRVTGFTVRDGLVWAAYDIANPEKHRG 299 >tr|C5BWK2|C5BWK2_BEUC1 Tax_Id=471853 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Beutenbergia cavernae] Length = 318 Score = 248 bits (633), Expect = 7e-64 Identities = 140/297 (47%), Positives = 172/297 (57%), Gaps = 8/297 (2%) Query: 3 TAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRW-AGQEAPIENLQAWLTTVVS 61 TA D FEA RP LL VAYRLTG+ ADAED VQEAW+R + A I +L AWLTTVVS Sbjct: 5 TAELADAFEAERPRLLRVAYRLTGSVADAEDAVQEAWLRLDRAESAAIRDLPAWLTTVVS 64 Query: 62 RLGLDRLRSAAHRRESYYGEWLPEPVVTGID-------GNDPLNAVVAGEDARFAAMVVL 114 R+ LDRL SAA RRE+Y G WLPEPVVT DPL+AVVA DAR+AA+V+L Sbjct: 65 RICLDRLTSAAARRETYVGNWLPEPVVTAFPTPGHASAAPDPLDAVVADADARYAALVIL 124 Query: 115 EQLSPDQRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXNTHNE 174 E L P+QRVAFVL+DGFGVPF D+ADVLG T Sbjct: 125 EALPPNQRVAFVLHDGFGVPFADVADVLGTSPANARQLAARARAGVADPPPASDAETRLR 184 Query: 175 IXXXXXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYG 234 +V +LHPDV GDS TA + G +KVARF GL +YG Sbjct: 185 AVEQLAAALSAGDLDAIVAVLHPDVVARGDSGGTTATALHAVRGSDKVARFFLGLLDKYG 244 Query: 235 PNWLAGAQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDK 291 + + A+ L+NGELG G+P + + PR+ A+ VRDG++ ++D+ANP K Sbjct: 245 THVITTARPVLVNGELGFLLAGSPGDATHDPIPPRVMALGVRDGRIAELYDLANPAK 301 >tr|C0ZMV7|C0ZMV7_RHOE4 Tax_Id=234621 (sigJ)SubName: Full=Putative RNA polymerase ECF-type sigma factor SigJ;[Rhodococcus erythropolis] Length = 320 Score = 237 bits (605), Expect = 1e-60 Identities = 130/311 (41%), Positives = 167/311 (53%), Gaps = 14/311 (4%) Query: 1 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWA------GQEAPIENLQA 54 M + FE R HL +VAYRLTG+++DA+D VQEAWIR G + I L+ Sbjct: 1 MLSPTTAQDFEQHRGHLTSVAYRLTGSFSDAQDAVQEAWIRLQVAQSRQGSDLEIRELRG 60 Query: 55 WLTTVVSRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGN--------DPLNAVVAGEDA 106 WLTTVV R+ LD L+SAA RRESY G+WLPEP+VT +D DPL VV E Sbjct: 61 WLTTVVGRICLDHLKSAAVRRESYVGQWLPEPIVTPVDATAGTPSATPDPLEYVVTQEQN 120 Query: 107 RFAAMVVLEQLSPDQRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXX 166 RFAA+VVL+ L+P QRVAFVL+DGF VPF ++A +L + Sbjct: 121 RFAALVVLDTLTPAQRVAFVLHDGFDVPFAEVARILDIEVATARQLASRARKAAASAPVP 180 Query: 167 XXXNTHNEIXXXXXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFL 226 H V+ L PD GD+ TA ++ G ++VARF Sbjct: 181 VSSEEHAAAVERLVTAIASGDLNAVIDALDPDAVLIGDAGGTTRTAVNIVRGSDRVARFY 240 Query: 227 FGLARRYGPNWLAGAQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDV 286 GLAR+YGP + L+NG LG G+P D YP+ R+ TVRDG VCA +D+ Sbjct: 241 LGLARKYGPAAVFSMSPVLVNGRLGGVFAGSPGDDQYPQFAARVAGFTVRDGVVCAAYDI 300 Query: 287 ANPDKFTGSPL 297 ANP KF+ P+ Sbjct: 301 ANPAKFSAVPM 311 >tr|C3JE23|C3JE23_RHOER Tax_Id=596309 SubName: Full=RNA polymerase sigma factor SigJ;[Rhodococcus erythropolis SK121] Length = 320 Score = 237 bits (605), Expect = 1e-60 Identities = 130/311 (41%), Positives = 168/311 (54%), Gaps = 14/311 (4%) Query: 1 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWA------GQEAPIENLQA 54 M + FE R HL +VAYRLTG+++DA+D VQEAWIR G + I L+ Sbjct: 1 MLSPTTAQDFEQHRGHLTSVAYRLTGSFSDAQDAVQEAWIRLQVAQSRQGSDLEIRELRG 60 Query: 55 WLTTVVSRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGN--------DPLNAVVAGEDA 106 WLTTVV R+ LD L+SAA RRESY G+WLPEP+VT +D DPL VV E Sbjct: 61 WLTTVVGRICLDHLKSAAVRRESYVGQWLPEPIVTPVDATSGTPSATPDPLEYVVTLEQN 120 Query: 107 RFAAMVVLEQLSPDQRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXX 166 RFAA+VVL+ L+P QRVAFVL+DGF VPF ++A +L + Sbjct: 121 RFAALVVLDTLTPAQRVAFVLHDGFDVPFAEVARILDIEVATARQLASRARKAAASAPVP 180 Query: 167 XXXNTHNEIXXXXXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFL 226 H V+ L PD GD+ TA ++ G ++VARF Sbjct: 181 VSSEEHAAAVERLVTAIASGDLNAVIGALDPDAVLIGDAGGTTRTAVNIVRGSDRVARFY 240 Query: 227 FGLARRYGPNWLAGAQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDV 286 GLAR+YGP + L+NG+LG G+P D YP+ R+ TVRDG VCA +D+ Sbjct: 241 LGLARKYGPAAVFSMSPVLVNGQLGGVFAGSPGDDQYPQFAARVAGFTVRDGVVCAAYDI 300 Query: 287 ANPDKFTGSPL 297 ANP KF+ P+ Sbjct: 301 ANPAKFSAVPM 311 >tr|Q6XAT1|Q6XAT1_9NOCA Tax_Id=227347 (aryS)SubName: Full=Putative ECF sigma factor;[Rhodococcus sp. DS7] Length = 320 Score = 233 bits (593), Expect = 3e-59 Identities = 128/311 (41%), Positives = 165/311 (53%), Gaps = 14/311 (4%) Query: 1 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWA------GQEAPIENLQA 54 M + FE R HL +VAYRLTG+++DA+D VQEAWIR G + I L+ Sbjct: 1 MLSPTTAQDFEQHRGHLTSVAYRLTGSFSDAQDAVQEAWIRLQVAQSRQGSDLEIRELRG 60 Query: 55 WLTTVVSRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGN--------DPLNAVVAGEDA 106 WLTTVV R+ LD L+SAA RRESY G+WLPEP+VT +D DPL VV E Sbjct: 61 WLTTVVGRICLDHLKSAAVRRESYVGQWLPEPIVTPVDATAGTPSATPDPLEYVVRQEQN 120 Query: 107 RFAAMVVLEQLSPDQRVAFVLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXX 166 RF A+VVL+ L+P QRVAFVL+DG VPF ++A +L + Sbjct: 121 RFGALVVLDTLTPAQRVAFVLHDGLDVPFVEVARILDIEVATARQLASRARKAAASAPVP 180 Query: 167 XXXNTHNEIXXXXXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFL 226 H V+ L PD GD+ TA ++ G ++VARF Sbjct: 181 VSSEEHAAAVERLVTAIASGDLNAVIDALDPDAVLIGDAGGTTRTAVNIVRGSDRVARFY 240 Query: 227 FGLARRYGPNWLAGAQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDV 286 GLAR+YGP + L+NG LG G+P D YP+ R+ TVRDG VCA +D+ Sbjct: 241 LGLARKYGPAAVFSMSPVLVNGRLGGVFAGSPGDDQYPQFAARVAGFTVRDGVVCAAYDI 300 Query: 287 ANPDKFTGSPL 297 ANP KF+ P+ Sbjct: 301 ANPAKFSAVPM 311 >tr|A4F9V2|A4F9V2_SACEN Tax_Id=405948 (sigJ)SubName: Full=RNA polymerase sigma factor, putative;[Saccharopolyspora erythraea] Length = 295 Score = 225 bits (574), Expect = 5e-57 Identities = 127/291 (43%), Positives = 161/291 (55%), Gaps = 8/291 (2%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAPIENLQAWLTTVVSRLGLDRL 68 +F+ R L+ +AYRLTG DAED VQEAW+R A +++P+ L AWLTTVVSR+ LDRL Sbjct: 11 EFDGHRGRLVGIAYRLTGRLDDAEDAVQEAWLRLAAEKSPVRELGAWLTTVVSRICLDRL 70 Query: 69 RSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLY 128 RSAA RRE Y G WLPEPVVT +D +DP N VV ED R AA+ VL +L +QR+AFVL+ Sbjct: 71 RSAAVRREQYVGPWLPEPVVTELDSHDPQNIVVTREDMRMAALRVLHELPAEQRLAFVLH 130 Query: 129 DGFGVPFPDIADVLG--VXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXXXXXXXXXXX 186 DGF VPF +IA++ G V + Sbjct: 131 DGFDVPFTEIAEIAGCAVATARQHASRARRALAAAEPAPRVPLPEQRRMLDRFLIALASG 190 Query: 187 XXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLALI 246 + R LHP GDS+ +A TA R I G EK+ARFL GL +YG +G + L+ Sbjct: 191 DITEITRALHPRAALFGDSDGRARTARRPILGREKIARFLAGLLEKYGEALYSGLRPVLV 250 Query: 247 NGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSPL 297 NG+LG P P G R+ RDG V V+D+ NPDK +PL Sbjct: 251 NGDLGLVFPALPERQG------RVVTFAYRDGAVSEVFDIVNPDKLVRAPL 295 >tr|C6WRH4|C6WRH4_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Actinosynnema mirum] Length = 329 Score = 206 bits (523), Expect = 4e-51 Identities = 126/284 (44%), Positives = 164/284 (57%), Gaps = 15/284 (5%) Query: 14 RPHLLAVAYRLTGTYADAEDIVQEAWIRWAG----QEAPIENLQAWLTTVVSRLGLDRLR 69 R HL+ VAYRLTG+ ADAED VQEAW+R +G A I +AWLTTVV R+ LDRLR Sbjct: 25 RTHLVGVAYRLTGSVADAEDAVQEAWLRLSGLSERARAEIREPRAWLTTVVGRVCLDRLR 84 Query: 70 SAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLYD 129 SAA RRE Y G WLPEP+V G ++PL+AVV + R AA+VVL++L+P+QRVAFVL+D Sbjct: 85 SAAVRRERYVGSWLPEPLV-GEVVDEPLDAVVRDDGVRMAALVVLDRLTPEQRVAFVLHD 143 Query: 130 GFGVPFPDIADVLG--VXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXXXXXXXXXXXX 187 FG+PF +IA VLG V E+ Sbjct: 144 AFGLPFDEIAAVLGVEVAAARQHASRGRRAAAAADPPPRVALAEQREVLGRFVAALAAGD 203 Query: 188 XXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLALIN 247 V+ LLHPD D KA A + G ++VARF+ GLA ++G L A+ L+N Sbjct: 204 VQAVLSLLHPDALVISDGGGKARAAINQVVGADRVARFMVGLALKHG--GLGDARPVLVN 261 Query: 248 GELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDK 291 G+LG + PE+ RIT++ VRDG V A++D++NPDK Sbjct: 262 GDLGLLRRAS------PEVARRITSVVVRDGLVVALYDISNPDK 299 >tr|D2BAH7|D2BAH7_STRRD Tax_Id=479432 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Streptosporangium roseum] Length = 300 Score = 159 bits (403), Expect = 3e-37 Identities = 103/290 (35%), Positives = 144/290 (49%), Gaps = 23/290 (7%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWA-GQEAPIENLQAWLTTVVSRLGLDR 67 +F+A+RP L+ VAY L G+ +AED+VQ+AW+R A I+++ WL VSRL LD Sbjct: 22 EFDAIRPRLVGVAYGLLGSLDEAEDVVQDAWLRLGRADRAEIQDVTGWLVVTVSRLALDV 81 Query: 68 LRSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVL 127 LRSA RRE Y G WLPEPVVT DP + V E A +VVLE LSP +R AFVL Sbjct: 82 LRSARVRREEYVGPWLPEPVVTEA---DPADRVTLAESMSMAMLVVLESLSPAERTAFVL 138 Query: 128 YDGFGVPFPDIADVLG--VXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXXXXXXXXXX 185 +D FG+PF ++A +G + H + Sbjct: 139 HDVFGLPFEEVAQAVGRSPAACRQLAARARKHVAARAPRFEVDADEHRRVVEAFARASTG 198 Query: 186 XXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLA- 244 ++ LL PDV D A R + G +VARF+ G+A R+G AG++ Sbjct: 199 RDIDALLALLDPDVVLRSDGGGLVTAARRPVRGAGRVARFIAGVAERFG----AGSRFTP 254 Query: 245 -LINGELG--TYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDK 291 ++NG G + GA +G + A+TV G++ + V NP+K Sbjct: 255 IMVNGRPGLLRFRDGALSG---------VYALTVAGGRITEIHIVVNPEK 295 >tr|D3FDF0|D3FDF0_CONWI Tax_Id=469383 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Conexibacter woesei] Length = 280 Score = 158 bits (400), Expect = 7e-37 Identities = 109/294 (37%), Positives = 143/294 (48%), Gaps = 21/294 (7%) Query: 1 MTTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEAP-IENLQAWLTTV 59 MT A R F RP LL +AY G +AED+VQEAW+R +A IENL WLTTV Sbjct: 1 MTAAER---FAQARPRLLRLAYSELGDLGEAEDVVQEAWLRLERVDAETIENLDGWLTTV 57 Query: 60 VSRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSP 119 V+RL LDRLRSA RRE Y G WLPEPVV+ DP + V E +A + VLEQLSP Sbjct: 58 VARLALDRLRSARARREMYVGPWLPEPVVS----EDPADRVTLDESVSYALLTVLEQLSP 113 Query: 120 DQRVAFVLYDGFGVPFPDIADVLG--VXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXX 177 +R AFVL++ F VPF D+A+V+G + H+ Sbjct: 114 AERTAFVLHEVFDVPFGDVAEVVGRTPEAVRQLASRARRHVQRERPRFAASRDEHDRAVR 173 Query: 178 XXXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNW 237 +V +L PDV +T D A A + + G +VAR L+R+ Sbjct: 174 AFAQAVTEGDLGDLVAVLDPDVVWTSDGGGHATAARKPLFGSSRVARAWAALSRKSAQEP 233 Query: 238 LAGAQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDK 291 + +NG LG P+GDG L V DG++ + + NP+K Sbjct: 234 IE----TELNGRLGLV---LPSGDGQRAAL----LFVVSDGRITRIDAIRNPEK 276 >tr|Q2J9Z9|Q2J9Z9_FRASC Tax_Id=106370 SubName: Full=Sigma-24;[Frankia sp.] Length = 279 Score = 156 bits (395), Expect = 3e-36 Identities = 104/287 (36%), Positives = 142/287 (49%), Gaps = 19/287 (6%) Query: 8 DQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWA-GQEAPIENLQAWLTTVVSRLGLD 66 ++F RP LL +AY G +AE++VQ+AW+R A A IENL WLTTVV+RL LD Sbjct: 5 ERFTQARPRLLRLAYSELGDLGEAEEVVQDAWLRLARADHAAIENLDGWLTTVVARLALD 64 Query: 67 RLRSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFV 126 RLRSA RRE Y G WLPEP+ +G DP + V E +A + VLEQLSP +R AFV Sbjct: 65 RLRSARARREIYVGPWLPEPLGSG----DPADRVTLDESVSYALLAVLEQLSPAERTAFV 120 Query: 127 LYDGFGVPFPDIADVLG--VXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXXXXXXXXX 184 L+D F +PF ++A+V+G H+ Sbjct: 121 LHDVFDIPFGEVAEVVGRTPEAVRQLAARARRHVRREHSRFVASGEEHDRAVRAFALAVA 180 Query: 185 XXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQLA 244 G++ +L PDV + D A A R +HG +VAR L+RR L Sbjct: 181 EGDLGGLLAVLDPDVVWRSDGGGHAVAARRPLHGDIRVARAWVALSRR-----LDHPIET 235 Query: 245 LINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDK 291 +NG+LG P+ DG+ L + V D ++ + V NP+K Sbjct: 236 TLNGQLGLV---IPSHDGHRAAL----SFAVSDNRITRIDVVRNPEK 275 >tr|D1VHP6|D1VHP6_9ACTO Tax_Id=298654 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Frankia sp. EuI1c] Length = 319 Score = 154 bits (389), Expect = 1e-35 Identities = 100/295 (33%), Positives = 145/295 (49%), Gaps = 19/295 (6%) Query: 10 FEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAG--QEAPIENLQAWLTTVVSRLGLDR 67 F+A RP L+ VAY + G+ DAED+V + W+R +E PI + +AW VSR+ +D Sbjct: 12 FQAARPRLVRVAYAILGSRGDAEDVVADCWLRLVAHHREEPIRDPEAWAVVTVSRMAVDV 71 Query: 68 LRSAAHRRESYYGEWLPEPVVTGI--DGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAF 125 LRSA RRE Y G WLPEPV+T + D DP + V ++ +A +VVLE L+P +R AF Sbjct: 72 LRSARVRRERYVGPWLPEPVLTTVAPDQGDPADRVTLDDEVSYALLVVLETLTPAERTAF 131 Query: 126 VLYDGFGVPFPDIADVLGVXXXXXXXXXXXXXXXXXXXXXXXXXN--THNEIXXXXXXXX 183 VL+D FG+PFP++AD++G + H + Sbjct: 132 VLHDLFGLPFPEVADIVGRTPASVRQLASRARRHVHDRAGRPVVDPAEHRRVVEAFAAAA 191 Query: 184 XXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLAGAQL 243 ++ +L P+V D A R IHG +KVARF+ G+ + G+++ Sbjct: 192 GSGDLGTLIAVLDPEVVLVSDGGGFVTAARRPIHGADKVARFVLGVLAK----GQLGSEI 247 Query: 244 ALINGELGTYTPGAPAGDGYPEL--LPRITAMTVRDGKVCAVWDVANPDKFTGSP 296 L+ GAP G E L + A+TV G+V + V PDK P Sbjct: 248 ELVR------VNGAP-GFAVHEAGRLVAVVALTVAGGRVARLDLVVAPDKLPREP 295 >tr|D3CGT4|D3CGT4_9ACTO Tax_Id=648999 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Micromonospora sp. L5] Length = 317 Score = 154 bits (388), Expect = 2e-35 Identities = 107/297 (36%), Positives = 146/297 (49%), Gaps = 17/297 (5%) Query: 9 QFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAG------QEAPIENLQAWLTTVVSR 62 +FEA R LLAVA R+ G+ ++AED VQE W+R++G + A + +L+ WL T SR Sbjct: 7 EFEAERGRLLAVAQRMLGSRSEAEDAVQETWLRFSGALSDPEERARVRDLRGWLITTCSR 66 Query: 63 LGLDRLRSAAHRRESYYGEWLPEPVVTGI---DG--NDPLNAVVAGEDARFAAMVVLEQL 117 + LD LRSA RRE+Y G+WLPEPVVT DG DP V + A +VVLE+L Sbjct: 67 ICLDVLRSARVRREAYPGQWLPEPVVTAAPAADGFAPDPAERAVRADQLGTALLVVLERL 126 Query: 118 SPDQRVAFVLYDGFGVPFPDIADVLGV---XXXXXXXXXXXXXXXXXXXXXXXXXNTHNE 174 +P+QRVAFVL+D F VPF D+ADVL V Sbjct: 127 TPEQRVAFVLHDVFAVPFSDVADVLAVTPEAARQLASRARRAVHGPDAPRHSADLAEQRR 186 Query: 175 IXXXXXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYG 234 + +VR+L PDV GD+ P R + G E V R L GL + Sbjct: 187 VLAAFAAAVESGELEQLVRVLAPDVVSIGDAGGHFPAGRRPVVGVESVGRLLLGLYAQAR 246 Query: 235 PNWLAGAQLALINGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDK 291 + L++G LG T DG + +T+ + +G+V V++ NP K Sbjct: 247 QRGGLRGRPVLVDGTLGWQTEFFHR-DG--RTIRMVTSFAIHEGRVTGVFNQLNPAK 300 >tr|C5TA03|C5TA03_ACIDE Tax_Id=573060 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Acidovorax delafieldii 2AN] Length = 299 Score = 154 bits (388), Expect = 2e-35 Identities = 97/300 (32%), Positives = 143/300 (47%), Gaps = 17/300 (5%) Query: 2 TTAARTDQFEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEA-PIENLQAWLTTVV 60 TT A TD F RP L +AYR+ G ADAED++Q+AW+RW+ +A +++ +AWL T+V Sbjct: 7 TTPAATDPFNTARPRLFRIAYRMLGVRADAEDVLQDAWLRWSRTDANALQSAEAWLVTIV 66 Query: 61 SRLGLDRLRSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPD 120 +RL +DRLR+A RE+Y G WLPEP+V +D + P A + A M VLE+L P+ Sbjct: 67 TRLSIDRLRAAKAEREAYVGWWLPEPLVE-LDAHTPETAAELAGELSVAFMYVLERLGPE 125 Query: 121 QRVAFVLYDGFGVPFPDIADVLG--VXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXXX 178 +R AF+L F +P+IA LG H+++ Sbjct: 126 ERAAFLLRQVFDYDYPEIAAQLGKTEASCRQMVHRASERVQQARTRFEVPQAVHHQLLQR 185 Query: 179 XXXXXXXXXXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWL 238 + LL D GD + P+ P+ + GP ++ + L RR G + Sbjct: 186 FMNAAQSGDRHAIQALLSEDAQLIGDGGGRVPSFPKPLVGPFRITNLYWALFRRLGAQVV 245 Query: 239 AGAQLALINGELG--TYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSP 296 ++A INGE G Y G + A ++ A++ V NPDK G P Sbjct: 246 --YRMAHINGEPGLLRYVDGR---------IESAQAFVTDGERIVAIYAVRNPDKLAGIP 294 >tr|D3FEN5|D3FEN5_CONWI Tax_Id=469383 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily; Flags: Precursor;[Conexibacter woesei] Length = 305 Score = 153 bits (386), Expect = 3e-35 Identities = 100/291 (34%), Positives = 142/291 (48%), Gaps = 12/291 (4%) Query: 10 FEALRPHLLAVAYRLTGTYADAEDIVQEAWIRWAGQEA-PIENLQAWLTTVVSRLGLDRL 68 FE RP+L +AY G++A+A+D+VQEAW+R + PI +L+ WLTTVV RL LD L Sbjct: 13 FEDQRPYLRRLAYGTLGSFAEADDVVQEAWLRLQRTDVEPIRDLRGWLTTVVGRLALDAL 72 Query: 69 RSAAHRRESYYGEWLPEPVVTGIDGNDPLNAVVAGEDARFAAMVVLEQLSPDQRVAFVLY 128 SA +RRE Y G WLPEP+V + DP + V E A +VVLE+LSP +R AFVL+ Sbjct: 73 GSARNRRERYVGPWLPEPLVEDVAAEDPADRVTLDEQVTTALLVVLERLSPAERTAFVLH 132 Query: 129 DGFGVPFPDIADVLG--VXXXXXXXXXXXXXXXXXXXXXXXXXNTHNEIXXXXXXXXXXX 186 D FG+ F ++A+V+G H I Sbjct: 133 DVFGLSFAEVAEVVGRSPAAVRQLAARARRHVDDGTPRFPASREQHTRIVAAFAVAWQAG 192 Query: 187 XXXGVVRLLHPDVTFTGDSNRKAPTAPRVIHGPEKVARFLFGLARRYGPNWLA-GAQLAL 245 ++ +L P VTF D R + G E+VAR L LA +A + Sbjct: 193 DVDALLAVLDPGVTFRSDGGGNVVAVSRPVDGAERVARTLVALATANVRRGVAVRGGIVD 252 Query: 246 INGELGTYTPGAPAGDGYPELLPRITAMTVRDGKVCAVWDVANPDKFTGSP 296 +NG PG + + + + ++TV DG++ A+ V NP+K P Sbjct: 253 VNG-----LPGLLVEEDH---VRGVVSLTVDDGRIVAIDVVRNPEKLRHVP 295 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.320 0.138 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 2,439,073,690 Number of extensions: 98902633 Number of successful extensions: 213309 Number of sequences better than 10.0: 2795 Number of HSP's gapped: 213346 Number of HSP's successfully gapped: 3032 Length of query: 304 Length of database: 4,236,830,644 Length adjustment: 137 Effective length of query: 167 Effective length of database: 2,523,253,276 Effective search space: 421383297092 Effective search space used: 421383297092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 80 (35.4 bits)