BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_1804 (250 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0QTD8|A0QTD8_MYCS2 Tax_Id=246196 SubName: Full=RNA polymeras... 460 e-128 tr|Q8GR88|Q8GR88_MYCSM Tax_Id=1772 (sigF)SubName: Full=Alternati... 460 e-128 tr|A4TF18|A4TF18_MYCGI Tax_Id=350054 SubName: Full=RNA polymeras... 400 e-109 tr|A1T5N9|A1T5N9_MYCVP Tax_Id=350058 SubName: Full=RNA polymeras... 400 e-109 tr|Q1BCJ1|Q1BCJ1_MYCSS Tax_Id=164756 SubName: Full=RNA polymeras... 395 e-108 tr|A3PW35|A3PW35_MYCSJ Tax_Id=164757 SubName: Full=RNA polymeras... 395 e-108 tr|A1UCF2|A1UCF2_MYCSK Tax_Id=189918 SubName: Full=RNA polymeras... 395 e-108 tr|D5PCX9|D5PCX9_9MYCO Tax_Id=525368 (sigF)SubName: Full=RNA pol... 390 e-107 tr|Q73UG2|Q73UG2_MYCPA Tax_Id=1770 (sigF)SubName: Full=SigF_2;[M... 385 e-105 tr|Q7D5S2|Q7D5S2_MYCTU Tax_Id=1773 (sigF)SubName: Full=ALTERNATE... 383 e-104 tr|P96891|P96891_MYCBO Tax_Id=1765 (sigF)SubName: Full=PROBABLE ... 383 e-104 tr|C6DL23|C6DL23_MYCTK Tax_Id=478434 SubName: Full=RNA polymeras... 383 e-104 tr|C1AH60|C1AH60_MYCBT Tax_Id=561275 (sigF)SubName: Full=RNA pol... 383 e-104 tr|A5WSK1|A5WSK1_MYCTF Tax_Id=336982 SubName: Full=Alternate RNA... 383 e-104 tr|A5U7W0|A5U7W0_MYCTA Tax_Id=419947 (sigF)SubName: Full=Sigma f... 383 e-104 tr|A1KNT8|A1KNT8_MYCBP Tax_Id=410289 (sigF)SubName: Full=Probabl... 383 e-104 tr|Q50547|Q50547_MYCTU Tax_Id=1773 (sigF)SubName: Full=Stress re... 383 e-104 tr|D6G376|D6G376_MYCTU Tax_Id=478435 SubName: Full=RNA polymeras... 383 e-104 tr|D6FRI8|D6FRI8_MYCTU Tax_Id=611304 SubName: Full=RNA polymeras... 383 e-104 tr|D6FLJ3|D6FLJ3_MYCTU Tax_Id=611303 SubName: Full=RNA polymeras... 383 e-104 tr|D6F9T6|D6F9T6_MYCTU Tax_Id=611302 SubName: Full=RNA polymeras... 383 e-104 tr|D5ZLG5|D5ZLG5_MYCTU Tax_Id=537210 SubName: Full=RNA polymeras... 383 e-104 tr|D5Z8D1|D5Z8D1_MYCTU Tax_Id=537209 SubName: Full=Alternate RNA... 383 e-104 tr|D5YWN8|D5YWN8_MYCTU Tax_Id=515616 SubName: Full=Sigma factor ... 383 e-104 tr|D5Y8L9|D5Y8L9_MYCTU Tax_Id=520141 SubName: Full=Sigma factor ... 383 e-104 tr|D5XYV7|D5XYV7_MYCTU Tax_Id=515617 SubName: Full=RNA polymeras... 383 e-104 tr|A4KLI2|A4KLI2_MYCTU Tax_Id=395095 SubName: Full=Alternate RNA... 383 e-104 tr|A2VP82|A2VP82_MYCTU Tax_Id=348776 SubName: Full=Alternate RNA... 383 e-104 tr|D5YJQ4|D5YJQ4_MYCTU Tax_Id=520140 SubName: Full=Stress respon... 382 e-104 tr|B2HDZ0|B2HDZ0_MYCMM Tax_Id=216594 (sigF)SubName: Full=Alterna... 380 e-104 tr|A0PRJ9|A0PRJ9_MYCUA Tax_Id=362242 (sigF)SubName: Full=Alterna... 380 e-104 tr|A0QKG0|A0QKG0_MYCA1 Tax_Id=243243 SubName: Full=RNA polymeras... 370 e-101 tr|C1B084|C1B084_RHOOB Tax_Id=632772 (sigF)SubName: Full=RNA pol... 310 1e-82 tr|Q0SEW1|Q0SEW1_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,... 308 5e-82 tr|C3JIJ6|C3JIJ6_RHOER Tax_Id=596309 SubName: Full=RNA polymeras... 298 4e-79 tr|C0ZUP1|C0ZUP1_RHOE4 Tax_Id=234621 (sigF)SubName: Full=RNA pol... 297 7e-79 tr|B1MBH1|B1MBH1_MYCA9 Tax_Id=561007 SubName: Full=Alternative s... 283 1e-74 tr|C7MUM0|C7MUM0_SACVD Tax_Id=471857 SubName: Full=RNA polymeras... 283 1e-74 tr|A4TCX2|A4TCX2_MYCGI Tax_Id=350054 SubName: Full=RNA polymeras... 281 4e-74 tr|Q1B7Y0|Q1B7Y0_MYCSS Tax_Id=164756 SubName: Full=RNA polymeras... 278 4e-73 tr|A3Q0M9|A3Q0M9_MYCSJ Tax_Id=164757 SubName: Full=RNA polymeras... 278 4e-73 tr|A1UH27|A1UH27_MYCSK Tax_Id=189918 SubName: Full=RNA polymeras... 278 4e-73 tr|A1T842|A1T842_MYCVP Tax_Id=350058 SubName: Full=RNA polymeras... 277 1e-72 tr|D5PNL7|D5PNL7_COREQ Tax_Id=525370 (sigF)SubName: Full=RNA pol... 275 4e-72 tr|C3JPK6|C3JPK6_RHOER Tax_Id=596309 SubName: Full=RNA polymeras... 273 1e-71 >tr|A0QTD8|A0QTD8_MYCS2 Tax_Id=246196 SubName: Full=RNA polymerase sigma-F factor;[Mycobacterium smegmatis] Length = 250 Score = 460 bits (1184), Expect = e-128 Identities = 238/250 (95%), Positives = 238/250 (95%) Query: 1 MTSEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQV 60 MTSEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQV Sbjct: 1 MTSEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQV 60 Query: 61 ARVGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAAT 120 ARVGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAAT Sbjct: 61 ARVGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAAT 120 Query: 121 AELSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLG 180 AELSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLG Sbjct: 121 AELSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLG 180 Query: 181 DLDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXX 240 DLDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHV Sbjct: 181 DLDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAK 240 Query: 241 XXXXXXDQLQ 250 DQLQ Sbjct: 241 SLARLRDQLQ 250 >tr|Q8GR88|Q8GR88_MYCSM Tax_Id=1772 (sigF)SubName: Full=Alternative sigma factor SigF;[Mycobacterium smegmatis] Length = 250 Score = 460 bits (1184), Expect = e-128 Identities = 238/250 (95%), Positives = 238/250 (95%) Query: 1 MTSEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQV 60 MTSEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQV Sbjct: 1 MTSEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQV 60 Query: 61 ARVGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAAT 120 ARVGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAAT Sbjct: 61 ARVGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAAT 120 Query: 121 AELSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLG 180 AELSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLG Sbjct: 121 AELSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLG 180 Query: 181 DLDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXX 240 DLDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHV Sbjct: 181 DLDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAK 240 Query: 241 XXXXXXDQLQ 250 DQLQ Sbjct: 241 SLARLRDQLQ 250 >tr|A4TF18|A4TF18_MYCGI Tax_Id=350054 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium gilvum] Length = 262 Score = 400 bits (1027), Expect = e-109 Identities = 207/249 (83%), Positives = 224/249 (89%), Gaps = 1/249 (0%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 SEY+DV DMFRELA EGS ++ RQR++IVERCLPLADHIARRFDGRGEPR+DLVQVAR Sbjct: 14 SEYSDVADMFRELAELEEGSAAFQRQRDRIVERCLPLADHIARRFDGRGEPRDDLVQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNAV RFDV AGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE Sbjct: 74 VGLVNAVIRFDVTAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGG-GDEEAPAIVDTLGD 181 LSQRLGRAPT SELA EL+MDR+EVVEGL+AGSSYNTLSIDSGGG G+E+APAI DTLGD Sbjct: 134 LSQRLGRAPTPSELAAELEMDRDEVVEGLVAGSSYNTLSIDSGGGSGNEDAPAIADTLGD 193 Query: 182 LDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXX 241 +D+ LDQI+NRE+LRPLLA+LPERERTVLVLRFFESMTQTQIAERVGISQMHV Sbjct: 194 VDLTLDQIENREALRPLLAALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKS 253 Query: 242 XXXXXDQLQ 250 DQL+ Sbjct: 254 LTRLRDQLE 262 >tr|A1T5N9|A1T5N9_MYCVP Tax_Id=350058 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium vanbaalenii] Length = 262 Score = 400 bits (1027), Expect = e-109 Identities = 204/248 (82%), Positives = 222/248 (89%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 SEYADV MFRELA EG+ ++ RQR++IVERCLPLADHIARRFDGRGEPR+DLVQVAR Sbjct: 15 SEYADVAPMFRELAELEEGTAAFQRQRDRIVERCLPLADHIARRFDGRGEPRDDLVQVAR 74 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNAV RFDV AGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE Sbjct: 75 VGLVNAVIRFDVNAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 134 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAPTA+ELA EL+MDR+EVVEGL+AGSSYNTLSIDSGG G+E+APAI DTLGD+ Sbjct: 135 LSQRLGRAPTATELAAELEMDRDEVVEGLVAGSSYNTLSIDSGGSGNEDAPAIADTLGDV 194 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D+ LDQI+NRE+LRPLLA+LPERERTVL LRFFESMTQTQIAERVGISQMHV Sbjct: 195 DLSLDQIENREALRPLLAALPERERTVLALRFFESMTQTQIAERVGISQMHVSRLLAKSL 254 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 255 ARLRDQLE 262 >tr|Q1BCJ1|Q1BCJ1_MYCSS Tax_Id=164756 SubName: Full=RNA polymerase, sigma 28 subunit;[Mycobacterium sp.] Length = 263 Score = 395 bits (1015), Expect = e-108 Identities = 202/249 (81%), Positives = 222/249 (89%), Gaps = 1/249 (0%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 SEY+DV MFREL G T +P + RQR++IVERCLPLADHIARRFDGRGEPR+DLVQVAR Sbjct: 15 SEYSDVAPMFRELQGLTPSTPQFQRQRDRIVERCLPLADHIARRFDGRGEPRDDLVQVAR 74 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNAV RFDV+AGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG+ATAE Sbjct: 75 VGLVNAVIRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGSATAE 134 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGG-GGDEEAPAIVDTLGD 181 LSQRLGRAPTASELA EL MDR+EVVEGL+AGSSYNTLSIDSGG G+E+APAI DTLGD Sbjct: 135 LSQRLGRAPTASELAEELGMDRDEVVEGLVAGSSYNTLSIDSGGNSGNEDAPAIADTLGD 194 Query: 182 LDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXX 241 +D+GLDQI+NRE+LRPLLA+LPERER VL+LRFFE++TQTQIAERVGISQMHV Sbjct: 195 VDLGLDQIENREALRPLLAALPERERMVLLLRFFENLTQTQIAERVGISQMHVSRLLAKS 254 Query: 242 XXXXXDQLQ 250 DQLQ Sbjct: 255 LTRLRDQLQ 263 >tr|A3PW35|A3PW35_MYCSJ Tax_Id=164757 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium sp.] Length = 263 Score = 395 bits (1015), Expect = e-108 Identities = 202/249 (81%), Positives = 222/249 (89%), Gaps = 1/249 (0%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 SEY+DV MFREL G T +P + RQR++IVERCLPLADHIARRFDGRGEPR+DLVQVAR Sbjct: 15 SEYSDVAPMFRELQGLTPSTPQFQRQRDRIVERCLPLADHIARRFDGRGEPRDDLVQVAR 74 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNAV RFDV+AGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG+ATAE Sbjct: 75 VGLVNAVIRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGSATAE 134 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGG-GGDEEAPAIVDTLGD 181 LSQRLGRAPTASELA EL MDR+EVVEGL+AGSSYNTLSIDSGG G+E+APAI DTLGD Sbjct: 135 LSQRLGRAPTASELAEELGMDRDEVVEGLVAGSSYNTLSIDSGGNSGNEDAPAIADTLGD 194 Query: 182 LDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXX 241 +D+GLDQI+NRE+LRPLLA+LPERER VL+LRFFE++TQTQIAERVGISQMHV Sbjct: 195 VDLGLDQIENREALRPLLAALPERERMVLLLRFFENLTQTQIAERVGISQMHVSRLLAKS 254 Query: 242 XXXXXDQLQ 250 DQLQ Sbjct: 255 LTRLRDQLQ 263 >tr|A1UCF2|A1UCF2_MYCSK Tax_Id=189918 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium sp.] Length = 263 Score = 395 bits (1015), Expect = e-108 Identities = 202/249 (81%), Positives = 222/249 (89%), Gaps = 1/249 (0%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 SEY+DV MFREL G T +P + RQR++IVERCLPLADHIARRFDGRGEPR+DLVQVAR Sbjct: 15 SEYSDVAPMFRELQGLTPSTPQFQRQRDRIVERCLPLADHIARRFDGRGEPRDDLVQVAR 74 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNAV RFDV+AGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG+ATAE Sbjct: 75 VGLVNAVIRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGSATAE 134 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGG-GGDEEAPAIVDTLGD 181 LSQRLGRAPTASELA EL MDR+EVVEGL+AGSSYNTLSIDSGG G+E+APAI DTLGD Sbjct: 135 LSQRLGRAPTASELAEELGMDRDEVVEGLVAGSSYNTLSIDSGGNSGNEDAPAIADTLGD 194 Query: 182 LDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXX 241 +D+GLDQI+NRE+LRPLLA+LPERER VL+LRFFE++TQTQIAERVGISQMHV Sbjct: 195 VDLGLDQIENREALRPLLAALPERERMVLLLRFFENLTQTQIAERVGISQMHVSRLLAKS 254 Query: 242 XXXXXDQLQ 250 DQLQ Sbjct: 255 LTRLRDQLQ 263 >tr|D5PCX9|D5PCX9_9MYCO Tax_Id=525368 (sigF)SubName: Full=RNA polymerase sigma-F factor;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 262 Score = 390 bits (1003), Expect = e-107 Identities = 205/249 (82%), Positives = 219/249 (87%), Gaps = 1/249 (0%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV DMFRELA GS + RQR+KIVERCLPLADHIARRF+GRGEPR+DLVQVAR Sbjct: 14 NEYADVPDMFRELATVGAGSMEFQRQRDKIVERCLPLADHIARRFEGRGEPRDDLVQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNAV RFDV+AGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATAE Sbjct: 74 VGLVNAVVRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAE 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDE-EAPAIVDTLGD 181 LSQRLGRAPTA+ELA EL MDREEVVEGL+AGSSYNTLSIDSGGG DE EA AI DTLGD Sbjct: 134 LSQRLGRAPTATELAAELGMDREEVVEGLVAGSSYNTLSIDSGGGSDEDEARAIADTLGD 193 Query: 182 LDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXX 241 +D GLD+I+++ESLRPLL +LPERERTVLVLRFFESMTQTQIAERVGISQMHV Sbjct: 194 VDTGLDRIEDQESLRPLLEALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKS 253 Query: 242 XXXXXDQLQ 250 DQLQ Sbjct: 254 LTRLRDQLQ 262 >tr|Q73UG2|Q73UG2_MYCPA Tax_Id=1770 (sigF)SubName: Full=SigF_2;[Mycobacterium paratuberculosis] Length = 262 Score = 385 bits (989), Expect = e-105 Identities = 201/249 (80%), Positives = 218/249 (87%), Gaps = 1/249 (0%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV DMFRELA S + RQR+KIVERCLPLADHIARRF+GRGEPR+DLVQVAR Sbjct: 14 NEYADVPDMFRELATAEPDSMEFQRQRDKIVERCLPLADHIARRFEGRGEPRDDLVQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNAV RFDV+AGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAVVRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGG-DEEAPAIVDTLGD 181 LSQRLGRAPTA+ELA EL+MDREEVVEGL+AGSSYNTLSIDSGGG +EE AI DTLGD Sbjct: 134 LSQRLGRAPTATELAAELEMDREEVVEGLVAGSSYNTLSIDSGGGSEEEEVRAIADTLGD 193 Query: 182 LDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXX 241 +D GLD+I+++ESLRPLL +LPERERTVLVLRFFESMTQTQIAERVGISQMHV Sbjct: 194 VDTGLDRIEDQESLRPLLEALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKS 253 Query: 242 XXXXXDQLQ 250 DQLQ Sbjct: 254 LTRLRDQLQ 262 >tr|Q7D5S2|Q7D5S2_MYCTU Tax_Id=1773 (sigF)SubName: Full=ALTERNATE RNA POLYMERASE SIGMA FACTOR SIGF; SubName: Full=Stress response/stationary phase sigma factor SigF;[Mycobacterium tuberculosis] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|P96891|P96891_MYCBO Tax_Id=1765 (sigF)SubName: Full=PROBABLE RNA POLYMERASE SIGMA FACTOR SIGF; SubName: Full=Sigma factor SigF;[Mycobacterium bovis] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|C6DL23|C6DL23_MYCTK Tax_Id=478434 SubName: Full=RNA polymerase sigma factor sigF;[Mycobacterium tuberculosis] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|C1AH60|C1AH60_MYCBT Tax_Id=561275 (sigF)SubName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|A5WSK1|A5WSK1_MYCTF Tax_Id=336982 SubName: Full=Alternate RNA polymerase sigma factor sigF;[Mycobacterium tuberculosis] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|A5U7W0|A5U7W0_MYCTA Tax_Id=419947 (sigF)SubName: Full=Sigma factor SigF;[Mycobacterium tuberculosis] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|A1KNT8|A1KNT8_MYCBP Tax_Id=410289 (sigF)SubName: Full=Probable rna polymerase sigma factor sigF;[Mycobacterium bovis] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|Q50547|Q50547_MYCTU Tax_Id=1773 (sigF)SubName: Full=Stress response/stationary phase sigma factor;[Mycobacterium tuberculosis] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRVLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|D6G376|D6G376_MYCTU Tax_Id=478435 SubName: Full=RNA polymerase sigma factor sigF;[Mycobacterium tuberculosis KZN 605] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|D6FRI8|D6FRI8_MYCTU Tax_Id=611304 SubName: Full=RNA polymerase sigma factor sigF;[Mycobacterium tuberculosis K85] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|D6FLJ3|D6FLJ3_MYCTU Tax_Id=611303 SubName: Full=RNA polymerase sigma factor sigF;[Mycobacterium tuberculosis CPHL_A] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|D6F9T6|D6F9T6_MYCTU Tax_Id=611302 SubName: Full=RNA polymerase sigma factor sigF;[Mycobacterium tuberculosis T46] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|D5ZLG5|D5ZLG5_MYCTU Tax_Id=537210 SubName: Full=RNA polymerase sigma factor sigF;[Mycobacterium tuberculosis T17] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|D5Z8D1|D5Z8D1_MYCTU Tax_Id=537209 SubName: Full=Alternate RNA polymerase sigma factor sigF;[Mycobacterium tuberculosis GM 1503] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|D5YWN8|D5YWN8_MYCTU Tax_Id=515616 SubName: Full=Sigma factor SigF;[Mycobacterium tuberculosis 02_1987] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|D5Y8L9|D5Y8L9_MYCTU Tax_Id=520141 SubName: Full=Sigma factor SigF;[Mycobacterium tuberculosis T85] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|D5XYV7|D5XYV7_MYCTU Tax_Id=515617 SubName: Full=RNA polymerase sigma factor sigF;[Mycobacterium tuberculosis T92] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|A4KLI2|A4KLI2_MYCTU Tax_Id=395095 SubName: Full=Alternate RNA polymerase sigma factor sigF;[Mycobacterium tuberculosis str. Haarlem] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|A2VP82|A2VP82_MYCTU Tax_Id=348776 SubName: Full=Alternate RNA polymerase sigma factor sigF;[Mycobacterium tuberculosis C] Length = 261 Score = 383 bits (984), Expect = e-104 Identities = 194/248 (78%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|D5YJQ4|D5YJQ4_MYCTU Tax_Id=520140 SubName: Full=Stress response/stationary phase sigma factor SigF;[Mycobacterium tuberculosis EAS054] Length = 261 Score = 382 bits (981), Expect = e-104 Identities = 193/248 (77%), Positives = 215/248 (86%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVAR Sbjct: 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNA RFD++ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+ Sbjct: 74 VGLVNAAVRFDMKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDL 182 LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD+ Sbjct: 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXX 242 D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253 Query: 243 XXXXDQLQ 250 DQL+ Sbjct: 254 ARLRDQLE 261 >tr|B2HDZ0|B2HDZ0_MYCMM Tax_Id=216594 (sigF)SubName: Full=Alternate RNA polymerase sigma factor SigF;[Mycobacterium marinum] Length = 262 Score = 380 bits (977), Expect = e-104 Identities = 198/249 (79%), Positives = 217/249 (87%), Gaps = 1/249 (0%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFRELA SP++ R R+ IVERCLPLADHIARRF+GRGEPR+DLVQVAR Sbjct: 14 NEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDLVQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNAV RFDVE GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE Sbjct: 74 VGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGG-DEEAPAIVDTLGD 181 LSQRLGRAPTA+ELA EL+MDR EVVEGL+AGSSYNTLSIDSG G D++A AI DTLGD Sbjct: 134 LSQRLGRAPTATELAAELEMDRAEVVEGLVAGSSYNTLSIDSGSGSEDDDARAIADTLGD 193 Query: 182 LDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXX 241 +D GLD+I++RESLRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 MDAGLDRIEDRESLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKS 253 Query: 242 XXXXXDQLQ 250 DQL+ Sbjct: 254 LARLRDQLE 262 >tr|A0PRJ9|A0PRJ9_MYCUA Tax_Id=362242 (sigF)SubName: Full=Alternate RNA polymerase sigma factor SigF;[Mycobacterium ulcerans] Length = 262 Score = 380 bits (977), Expect = e-104 Identities = 198/249 (79%), Positives = 217/249 (87%), Gaps = 1/249 (0%) Query: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 +EYADV +MFRELA SP++ R R+ IVERCLPLADHIARRF+GRGEPR+DLVQVAR Sbjct: 14 NEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDLVQVAR 73 Query: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 VGLVNAV RFDVE GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE Sbjct: 74 VGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 133 Query: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGG-DEEAPAIVDTLGD 181 LSQRLGRAPTA+ELA EL+MDR EVVEGL+AGSSYNTLSIDSG G D++A AI DTLGD Sbjct: 134 LSQRLGRAPTATELAAELEMDRAEVVEGLVAGSSYNTLSIDSGSGSEDDDARAIADTLGD 193 Query: 182 LDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXX 241 +D GLD+I++RESLRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 194 MDAGLDRIEDRESLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKS 253 Query: 242 XXXXXDQLQ 250 DQL+ Sbjct: 254 LARLRDQLE 262 >tr|A0QKG0|A0QKG0_MYCA1 Tax_Id=243243 SubName: Full=RNA polymerase sigma-F factor;[Mycobacterium avium] Length = 241 Score = 370 bits (950), Expect = e-101 Identities = 194/241 (80%), Positives = 210/241 (87%), Gaps = 1/241 (0%) Query: 11 MFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVARVGLVNAVN 70 MFRELA S + RQR+KIVERCLPLADHIARRF+GRGEPR+DLVQVARVGLVNAV Sbjct: 1 MFRELATAEPDSMEFQRQRDKIVERCLPLADHIARRFEGRGEPRDDLVQVARVGLVNAVV 60 Query: 71 RFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAELSQRLGRA 130 RFDV+AGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+LSQRLGRA Sbjct: 61 RFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA 120 Query: 131 PTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGG-DEEAPAIVDTLGDLDMGLDQI 189 TA+ELA EL+MDREEVVEGL+AGSSYNTLSIDSGGG +EE AI DTLGD+D GLD+I Sbjct: 121 HTATELAAELEMDREEVVEGLVAGSSYNTLSIDSGGGSEEEEVRAIADTLGDVDTGLDRI 180 Query: 190 DNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXXXXXXDQL 249 +++ESLRPLL +LPERERTVLVLRFFESMTQTQIAERVGISQMHV DQL Sbjct: 181 EDQESLRPLLEALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKSLTRLRDQL 240 Query: 250 Q 250 Q Sbjct: 241 Q 241 >tr|C1B084|C1B084_RHOOB Tax_Id=632772 (sigF)SubName: Full=RNA polymerase sigma factor SigF;[Rhodococcus opacus] Length = 265 Score = 310 bits (793), Expect = 1e-82 Identities = 155/246 (63%), Positives = 188/246 (76%) Query: 4 EYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVARV 63 EY DV +FR++A E P R R+ +V RCLPLA+HIARRFDGRGE +DLVQVAR+ Sbjct: 17 EYQDVTALFRQMAALDEDDPRRSRLRDAVVTRCLPLAEHIARRFDGRGEAHDDLVQVARL 76 Query: 64 GLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAEL 123 GLVN+V+RFDVE GSDFVSFAVPTIMGEVRRHFRD W+V+VPRR+KELHL L A AEL Sbjct: 77 GLVNSVDRFDVERGSDFVSFAVPTIMGEVRRHFRDTGWAVRVPRRMKELHLALSQAVAEL 136 Query: 124 SQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDLD 183 SQ LG APT SELA LD+++EEV +GL+AG++Y T+S+D+ ++V+TLGD D Sbjct: 137 SQSLGHAPTVSELAEHLDLEQEEVAQGLLAGNAYQTVSVDNTSSDRAGELSMVETLGDYD 196 Query: 184 MGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXXX 243 +D ++N E+LRPLL SLPERERTVL+LRFF +MTQTQIA+RVGISQMHV Sbjct: 197 AAMDDVENHETLRPLLQSLPERERTVLMLRFFGNMTQTQIADRVGISQMHVSRLLAKTLA 256 Query: 244 XXXDQL 249 DQL Sbjct: 257 SLRDQL 262 >tr|Q0SEW1|Q0SEW1_RHOSR Tax_Id=101510 SubName: Full=Sigma factor, sigma 70 type, group 3;[Rhodococcus sp.] Length = 265 Score = 308 bits (788), Expect = 5e-82 Identities = 154/246 (62%), Positives = 187/246 (76%) Query: 4 EYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVARV 63 EY DV +F ++A E P R R+ +V RCLPLA+HIARRFDGRGE +DLVQVAR+ Sbjct: 17 EYQDVTALFEQMAALDEDDPRRSRLRDAVVTRCLPLAEHIARRFDGRGEAHDDLVQVARL 76 Query: 64 GLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAEL 123 GLVN+V+RFDVE GSDFVSFAVPTIMGEVRRHFRD W+V+VPRR+KELHL L A AEL Sbjct: 77 GLVNSVDRFDVERGSDFVSFAVPTIMGEVRRHFRDTGWAVRVPRRMKELHLALSQAVAEL 136 Query: 124 SQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDLD 183 SQ LG APT SELA LD+++EEV +GL+AG++Y T+S+D+ ++V+TLGD D Sbjct: 137 SQSLGHAPTVSELAEHLDLEQEEVAQGLLAGNAYQTVSVDNTSSDRTGELSMVETLGDYD 196 Query: 184 MGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVXXXXXXXXX 243 +D ++N E+LRPLL SLPERERTVL+LRFF +MTQTQIA+RVGISQMHV Sbjct: 197 AAMDDVENHETLRPLLQSLPERERTVLMLRFFGNMTQTQIADRVGISQMHVSRLLAKTLA 256 Query: 244 XXXDQL 249 DQL Sbjct: 257 SLRDQL 262 >tr|C3JIJ6|C3JIJ6_RHOER Tax_Id=596309 SubName: Full=RNA polymerase sigma-F factor;[Rhodococcus erythropolis SK121] Length = 264 Score = 298 bits (763), Expect = 4e-79 Identities = 145/233 (62%), Positives = 180/233 (77%) Query: 2 TSEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVA 61 T EY DV+ +F EL SP Y R R ++ RCLPLA+HIARRFDGRGE +DLVQVA Sbjct: 16 TDEYRDVIPVFEELRTLEPHSPEYERVRTALITRCLPLAEHIARRFDGRGEAHDDLVQVA 75 Query: 62 RVGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATA 121 R+GLVNAV+RFD GSDFVSFAVPT+MGEVRRHFRD W+++VPRR+KELH +LG A + Sbjct: 76 RLGLVNAVDRFDSTRGSDFVSFAVPTVMGEVRRHFRDTGWALRVPRRMKELHFQLGQAIS 135 Query: 122 ELSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGD 181 ELSQ+LG APT ELA L ++REEV + LIAG++Y T+S+D + +V+TLGD Sbjct: 136 ELSQQLGHAPTVDELAETLGIEREEVAQALIAGNAYQTVSVDGAASNHTDDLPLVETLGD 195 Query: 182 LDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHV 234 D L+ ++N E+LRPLL LPERERTVL+LRFF ++TQTQIAE+VG+SQMHV Sbjct: 196 YDAALENVENHEALRPLLDKLPERERTVLMLRFFGNLTQTQIAEKVGVSQMHV 248 >tr|C0ZUP1|C0ZUP1_RHOE4 Tax_Id=234621 (sigF)SubName: Full=RNA polymerase sigma factor SigF;[Rhodococcus erythropolis] Length = 264 Score = 297 bits (761), Expect = 7e-79 Identities = 144/233 (61%), Positives = 180/233 (77%) Query: 2 TSEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVA 61 T EY DV+ +F E+ SP Y R R ++ RCLPLA+HIARRFDGRGE +DLVQVA Sbjct: 16 TDEYRDVIPVFEEMRTLEPHSPEYERVRTALITRCLPLAEHIARRFDGRGEAHDDLVQVA 75 Query: 62 RVGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATA 121 R+GLVNAV+RFD GSDFVSFAVPT+MGEVRRHFRD W+++VPRR+KELH +LG A + Sbjct: 76 RLGLVNAVDRFDSTRGSDFVSFAVPTVMGEVRRHFRDTGWALRVPRRMKELHFQLGQAIS 135 Query: 122 ELSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGD 181 ELSQ+LG APT ELA L ++REEV + LIAG++Y T+S+D + +V+TLGD Sbjct: 136 ELSQQLGHAPTVDELAETLGIEREEVAQALIAGNAYQTVSVDGAASNHTDDLPLVETLGD 195 Query: 182 LDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHV 234 D L+ ++N E+LRPLL LPERERTVL+LRFF ++TQTQIAE+VG+SQMHV Sbjct: 196 YDAALENVENHEALRPLLDKLPERERTVLMLRFFGNLTQTQIAEKVGVSQMHV 248 >tr|B1MBH1|B1MBH1_MYCA9 Tax_Id=561007 SubName: Full=Alternative sigma factor SigF;[Mycobacterium abscessus] Length = 272 Score = 283 bits (725), Expect = 1e-74 Identities = 144/234 (61%), Positives = 181/234 (77%), Gaps = 1/234 (0%) Query: 2 TSEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVA 61 T +YADV DMFR LAG E S +Y R+ E+IV RCLPLAD++AR FD RGE EDL+QVA Sbjct: 23 TDDYADVPDMFRSLAGLAEHSDAYQRKHEEIVTRCLPLADNVARHFDRRGEDLEDLIQVA 82 Query: 62 RVGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATA 121 RVGL+NAVNRFD E G+ F+ FAVPT+MGEVRRHFRD+ WS+ VPR +++ H ++ ATA Sbjct: 83 RVGLLNAVNRFDPEKGASFLGFAVPTMMGEVRRHFRDHGWSLHVPRAIRDRHAQISRATA 142 Query: 122 ELSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSG-GGGDEEAPAIVDTLG 180 EL+Q L RAPTA ELA EL +DREEVVE LIA +Y SI++ GD+E+ + D LG Sbjct: 143 ELTQELQRAPTAGELAAELGIDREEVVESLIAADAYQPQSIEAPLSHGDQESKHLSDLLG 202 Query: 181 DLDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHV 234 + D L+ + NRE++RPLLA+LP RERTVL LRFF+ MTQ+QIA ++G+SQMHV Sbjct: 203 NEDPALEHVTNREAVRPLLANLPLRERTVLELRFFKGMTQSQIAAQIGVSQMHV 256 >tr|C7MUM0|C7MUM0_SACVD Tax_Id=471857 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Saccharomonospora viridis] Length = 266 Score = 283 bits (724), Expect = 1e-74 Identities = 143/230 (62%), Positives = 183/230 (79%), Gaps = 1/230 (0%) Query: 5 YADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVARVG 64 Y D+ +F LA P V RE+I+ RCLPLA+HIARRF GRGEPR+DLVQVAR+G Sbjct: 21 YEDLSPLFNALAALDPDDPQRVTLREEIITRCLPLAEHIARRFVGRGEPRDDLVQVARLG 80 Query: 65 LVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAELS 124 L+NA++RFD G++FV+FAVPTIMGEVRRHFRD+SW+V+VPRRLKELHL L A+++L+ Sbjct: 81 LLNAIDRFDASRGTEFVAFAVPTIMGEVRRHFRDSSWAVRVPRRLKELHLSLSQASSKLA 140 Query: 125 QRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDLDM 184 QRLGRAPT SELA EL + E+V +GL+AG++Y ++S+D+ DE + +T+G D+ Sbjct: 141 QRLGRAPTPSELAAELGLSPEDVWDGLLAGNAYQSVSMDA-AYDDEGTLPLAETVGHDDV 199 Query: 185 GLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHV 234 L+ ++ ESL+PLLASLPERER VL+LRFF +MTQTQIAERVGISQMHV Sbjct: 200 ELEHVEYHESLQPLLASLPERERRVLILRFFGNMTQTQIAERVGISQMHV 249 >tr|A4TCX2|A4TCX2_MYCGI Tax_Id=350054 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium gilvum] Length = 342 Score = 281 bits (720), Expect = 4e-74 Identities = 145/232 (62%), Positives = 184/232 (79%), Gaps = 2/232 (0%) Query: 5 YADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVARVG 64 Y DVLDMFRELA S ++ RQRE I+ RCLPLADHIARRF GRGE EDLVQVARVG Sbjct: 88 YDDVLDMFRELAVLDRDSAAFRRQREAIIARCLPLADHIARRFRGRGEGHEDLVQVARVG 147 Query: 65 LVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAELS 124 L+NAVNRFDV++ +DF++FAVPT+MGEVRR+FRD+ WS+KVPRRLKEL++RL AA A+L+ Sbjct: 148 LLNAVNRFDVDSANDFLAFAVPTMMGEVRRYFRDHGWSLKVPRRLKELNVRLNAARADLT 207 Query: 125 QRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSID--SGGGGDEEAPAIVDTLGDL 182 Q L RAPT SELA L +DREEVVEGL+A ++Y+T S + + GD E ++ DT G Sbjct: 208 QELNRAPTPSELAKYLGIDREEVVEGLVAANAYSTRSTEQPTTFSGDGEGLSLQDTFGAP 267 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHV 234 D + ++ + +++PLLA+LPER+R VL LRFFE TQ+QIAE++G+SQMHV Sbjct: 268 DDNIQKVIDVNTVQPLLAALPERDRLVLKLRFFEDRTQSQIAEQIGVSQMHV 319 >tr|Q1B7Y0|Q1B7Y0_MYCSS Tax_Id=164756 SubName: Full=RNA polymerase, sigma 28 subunit;[Mycobacterium sp.] Length = 269 Score = 278 bits (711), Expect = 4e-73 Identities = 140/232 (60%), Positives = 183/232 (78%), Gaps = 1/232 (0%) Query: 4 EYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVARV 63 +Y DV DMFR L+ + G+P + RQRE+IV RCLPLADHIA R+ +GE +DLVQ+ARV Sbjct: 22 DYTDVPDMFRLLSVLSPGTPDHDRQRERIVTRCLPLADHIAFRYHRKGENLDDLVQIARV 81 Query: 64 GLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAEL 123 GL++AVNRFD E G++F+SFAVPT++GE+RRHFRDN W++ VPRRLK+LH+++ AT L Sbjct: 82 GLMHAVNRFDPENGANFLSFAVPTMLGEIRRHFRDNGWAMHVPRRLKDLHVQITRATPRL 141 Query: 124 SQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSG-GGGDEEAPAIVDTLGDL 182 +Q LGR PT ++LA EL DR+EVVE L+AG +Y+ SIDS D+ ++ DTLG++ Sbjct: 142 TQSLGRPPTPTDLAAELGADRQEVVECLVAGDAYSLRSIDSPISSSDDTTRSLADTLGEV 201 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHV 234 D ++ I +RESLRPLLA+L ERERTV+ LRFF SMTQTQIAER+G+SQM V Sbjct: 202 DGEMEHITDRESLRPLLAALTERERTVISLRFFASMTQTQIAERIGVSQMQV 253 >tr|A3Q0M9|A3Q0M9_MYCSJ Tax_Id=164757 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium sp.] Length = 269 Score = 278 bits (711), Expect = 4e-73 Identities = 140/232 (60%), Positives = 183/232 (78%), Gaps = 1/232 (0%) Query: 4 EYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVARV 63 +Y DV DMFR L+ + G+P + RQRE+IV RCLPLADHIA R+ +GE +DLVQ+ARV Sbjct: 22 DYTDVPDMFRLLSVLSPGTPDHDRQRERIVTRCLPLADHIAFRYHRKGENLDDLVQIARV 81 Query: 64 GLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAEL 123 GL++AVNRFD E G++F+SFAVPT++GE+RRHFRDN W++ VPRRLK+LH+++ AT L Sbjct: 82 GLMHAVNRFDPENGANFLSFAVPTMLGEIRRHFRDNGWAMHVPRRLKDLHVQITRATPRL 141 Query: 124 SQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSG-GGGDEEAPAIVDTLGDL 182 +Q LGR PT ++LA EL DR+EVVE L+AG +Y+ SIDS D+ ++ DTLG++ Sbjct: 142 TQSLGRPPTPTDLAAELGADRQEVVECLVAGDAYSLRSIDSPISSSDDTTRSLADTLGEV 201 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHV 234 D ++ I +RESLRPLLA+L ERERTV+ LRFF SMTQTQIAER+G+SQM V Sbjct: 202 DGEMEHITDRESLRPLLAALTERERTVISLRFFASMTQTQIAERIGVSQMQV 253 >tr|A1UH27|A1UH27_MYCSK Tax_Id=189918 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium sp.] Length = 269 Score = 278 bits (711), Expect = 4e-73 Identities = 140/232 (60%), Positives = 183/232 (78%), Gaps = 1/232 (0%) Query: 4 EYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVARV 63 +Y DV DMFR L+ + G+P + RQRE+IV RCLPLADHIA R+ +GE +DLVQ+ARV Sbjct: 22 DYTDVPDMFRLLSVLSPGTPDHDRQRERIVTRCLPLADHIAFRYHRKGENLDDLVQIARV 81 Query: 64 GLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAEL 123 GL++AVNRFD E G++F+SFAVPT++GE+RRHFRDN W++ VPRRLK+LH+++ AT L Sbjct: 82 GLMHAVNRFDPENGANFLSFAVPTMLGEIRRHFRDNGWAMHVPRRLKDLHVQITRATPRL 141 Query: 124 SQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSG-GGGDEEAPAIVDTLGDL 182 +Q LGR PT ++LA EL DR+EVVE L+AG +Y+ SIDS D+ ++ DTLG++ Sbjct: 142 TQSLGRPPTPTDLAAELGADRQEVVECLVAGDAYSLRSIDSPISSSDDTTRSLADTLGEV 201 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHV 234 D ++ I +RESLRPLLA+L ERERTV+ LRFF SMTQTQIAER+G+SQM V Sbjct: 202 DGEMEHITDRESLRPLLAALTERERTVISLRFFASMTQTQIAERIGVSQMQV 253 >tr|A1T842|A1T842_MYCVP Tax_Id=350058 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium vanbaalenii] Length = 242 Score = 277 bits (708), Expect = 1e-72 Identities = 138/226 (61%), Positives = 184/226 (81%), Gaps = 2/226 (0%) Query: 11 MFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVARVGLVNAVN 70 MFRELA EGS Y RQR+ I+ERCLPLADHIARRF GRGE EDLVQVARVGL+NAVN Sbjct: 1 MFRELALLDEGSAPYRRQRDAIIERCLPLADHIARRFRGRGEAHEDLVQVARVGLLNAVN 60 Query: 71 RFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAELSQRLGRA 130 RFDV++ +DF++FAVPT+MGEVRR+FRD+ WS+KVPRRLKEL++RL +A +EL+ +L RA Sbjct: 61 RFDVDSANDFLAFAVPTMMGEVRRYFRDHGWSLKVPRRLKELNVRLNSARSELTHQLNRA 120 Query: 131 PTASELAHELDMDREEVVEGLIAGSSYNTLSI--DSGGGGDEEAPAIVDTLGDLDMGLDQ 188 PT SELA L M+R+E+VEGL+A ++Y+T S ++ GD + ++DT+G D G+ + Sbjct: 121 PTPSELAEFLGMERDEIVEGLVAANAYSTRSTEQETMRTGDGDGLTLLDTIGGPDEGIQR 180 Query: 189 IDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHV 234 + + ++++PLLA LP R+R VL LRFF+++TQ+QIAER+G+SQMHV Sbjct: 181 VIDIQTVQPLLAKLPARDRLVLQLRFFDNLTQSQIAERIGVSQMHV 226 >tr|D5PNL7|D5PNL7_COREQ Tax_Id=525370 (sigF)SubName: Full=RNA polymerase sigma-F factor;[Rhodococcus equi ATCC 33707] Length = 259 Score = 275 bits (703), Expect = 4e-72 Identities = 139/232 (59%), Positives = 172/232 (74%), Gaps = 1/232 (0%) Query: 4 EYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVARV 63 EY+DV MF L E P + RE I+ RCLPLA+HIARRFD RGEP EDLVQVA + Sbjct: 11 EYSDVKPMFASLQALDENDPGHAELRESIITRCLPLAEHIARRFDRRGEPFEDLVQVASI 70 Query: 64 GLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAEL 123 GLVNAV+R+DVE GSDF++FAVPTIMGEVRRHFRD W+V+VPRRLKELHL L +A+L Sbjct: 71 GLVNAVDRYDVERGSDFLAFAVPTIMGEVRRHFRDTGWAVRVPRRLKELHLDLVKTSAQL 130 Query: 124 SQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSID-SGGGGDEEAPAIVDTLGDL 182 SQRLGR+PT E+A EL ++ EEV +GL A + Y LS+D + G G + + D LGD Sbjct: 131 SQRLGRSPTTREMAEELGIEVEEVAQGLQAANGYQALSVDAAAGSGPDTGSTLGDLLGDN 190 Query: 183 DMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHV 234 D + +++ E+LR +L LPERERTVL+LRFF + TQ+QIA VG+SQMHV Sbjct: 191 DSDIAGVEDHETLRVVLEGLPERERTVLLLRFFGNQTQSQIAAHVGVSQMHV 242 >tr|C3JPK6|C3JPK6_RHOER Tax_Id=596309 SubName: Full=RNA polymerase sigma-F factor;[Rhodococcus erythropolis SK121] Length = 260 Score = 273 bits (698), Expect = 1e-71 Identities = 133/231 (57%), Positives = 170/231 (73%) Query: 4 EYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVARV 63 +Y +++F +A PS + I+E CLPLA H+ARR+ GRG+P EDL QVARV Sbjct: 11 QYETAVELFVSMASLPPNDPSREKITTSIIELCLPLATHVARRYQGRGQPFEDLEQVARV 70 Query: 64 GLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAEL 123 GL+ AV RFDV+ GSDF+SFAVPT+MGEVR+HFRD+ WSV+VPR L+E HL L A L Sbjct: 71 GLIQAVQRFDVDKGSDFLSFAVPTVMGEVRKHFRDHGWSVRVPRSLQERHLALNRALTTL 130 Query: 124 SQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGDLD 183 SQ LGRAPT +ELA ELD++ +EV +GL AG+SY T +D+ GD ++DTLG D Sbjct: 131 SQTLGRAPTVAELAKELDIEPDEVEQGLTAGNSYRTTPLDTASAGDGSGLTLIDTLGQYD 190 Query: 184 MGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHV 234 + +IDN E+LRP L +LPERERT++VLRFF +TQ+QIAE+VGISQMHV Sbjct: 191 EAISRIDNHETLRPALLALPERERTIVVLRFFGHLTQSQIAEKVGISQMHV 241 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.318 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 1,864,032,847 Number of extensions: 78664330 Number of successful extensions: 265861 Number of sequences better than 10.0: 8246 Number of HSP's gapped: 262820 Number of HSP's successfully gapped: 8269 Length of query: 250 Length of database: 4,236,830,644 Length adjustment: 135 Effective length of query: 115 Effective length of database: 2,548,269,004 Effective search space: 293050935460 Effective search space used: 293050935460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 79 (35.0 bits)