BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_1901 (888 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0QTM9|A0QTM9_MYCS2 Tax_Id=246196 SubName: Full=DNA-binding H... 1356 0.0 tr|Q1BCA2|Q1BCA2_MYCSS Tax_Id=164756 SubName: Full=Transcription... 802 0.0 tr|A1UCP2|A1UCP2_MYCSK Tax_Id=189918 SubName: Full=Transcription... 802 0.0 tr|A3PWC9|A3PWC9_MYCSJ Tax_Id=164757 SubName: Full=Transcription... 799 0.0 tr|C7MUZ3|C7MUZ3_SACVD Tax_Id=471857 SubName: Full=Transcription... 608 e-171 tr|D0L562|D0L562_GORB4 Tax_Id=526226 SubName: Full=Regulatory pr... 544 e-152 tr|A4FHX0|A4FHX0_SACEN Tax_Id=405948 SubName: Full=Transcription... 536 e-150 tr|A4T5V1|A4T5V1_MYCGI Tax_Id=350054 SubName: Full=Tetratricopep... 517 e-144 tr|C1B102|C1B102_RHOOB Tax_Id=632772 SubName: Full=Putative LuxR... 511 e-142 tr|D6A8F7|D6A8F7_9ACTO Tax_Id=566461 SubName: Full=Transcription... 478 e-132 tr|Q0SE40|Q0SE40_RHOSR Tax_Id=101510 SubName: Full=Probable tran... 460 e-127 tr|C3JDJ0|C3JDJ0_RHOER Tax_Id=596309 SubName: Full=Putative DNA-... 447 e-123 tr|D2SB90|D2SB90_GEOOG Tax_Id=526225 SubName: Full=Transcription... 381 e-103 tr|A4T5W1|A4T5W1_MYCGI Tax_Id=350054 SubName: Full=Response regu... 251 3e-64 tr|Q8NN05|Q8NN05_CORGL Tax_Id=1718 SubName: Full=Bacterial regul... 229 1e-57 tr|A4QGC8|A4QGC8_CORGB Tax_Id=340322 SubName: Full=Putative unch... 229 1e-57 tr|Q8FN39|Q8FN39_COREF Tax_Id=152794 SubName: Full=Putative tran... 227 7e-57 tr|C8NQS2|C8NQS2_COREF Tax_Id=196164 SubName: Full=LuxR family b... 227 7e-57 tr|D5NWS5|D5NWS5_CORAM Tax_Id=649754 SubName: Full=ATP-dependent... 223 1e-55 tr|C8XGA7|C8XGA7_NAKMY Tax_Id=479431 SubName: Full=Transcription... 207 4e-51 tr|C8XHS3|C8XHS3_NAKMY Tax_Id=479431 SubName: Full=Transcription... 202 2e-49 tr|A8LB78|A8LB78_FRASN Tax_Id=298653 SubName: Full=Transcription... 169 1e-39 tr|D3D494|D3D494_9ACTO Tax_Id=102897 SubName: Full=Transcription... 169 1e-39 tr|Q8FN51|Q8FN51_COREF Tax_Id=152794 SubName: Full=Putative tran... 162 2e-37 tr|C8NQR0|C8NQR0_COREF Tax_Id=196164 SubName: Full=Transcription... 162 2e-37 tr|Q8NN19|Q8NN19_CORGL Tax_Id=1718 SubName: Full=ATP-dependent t... 157 9e-36 tr|A4QGB4|A4QGB4_CORGB Tax_Id=340322 SubName: Full=Putative unch... 156 1e-35 tr|C7QAL5|C7QAL5_CATAD Tax_Id=479433 SubName: Full=Transcription... 147 9e-33 tr|Q9XAT8|Q9XAT8_RHOER Tax_Id=1833 (thcG)SubName: Full=ThcG;[Rho... 114 7e-23 tr|D3FBN2|D3FBN2_CONWI Tax_Id=469383 SubName: Full=Transcription... 113 1e-22 tr|D2SDB3|D2SDB3_GEOOG Tax_Id=526225 SubName: Full=Transcription... 108 5e-21 tr|A8L5P7|A8L5P7_FRASN Tax_Id=298653 SubName: Full=Transcription... 105 4e-20 tr|D3F6D4|D3F6D4_CONWI Tax_Id=469383 SubName: Full=Transcription... 103 2e-19 tr|D3C4I5|D3C4I5_9ACTO Tax_Id=648999 SubName: Full=Transcription... 102 3e-19 tr|D1S4P0|D1S4P0_9ACTO Tax_Id=644283 SubName: Full=Transcription... 102 3e-19 tr|D2ASM3|D2ASM3_STRRD Tax_Id=479432 SubName: Full=ATPase-like p... 101 6e-19 tr|A0PRC8|A0PRC8_MYCUA Tax_Id=362242 SubName: Full=Conserved hyp... 100 1e-18 tr|B2HES6|B2HES6_MYCMM Tax_Id=216594 SubName: Full=Conserved hyp... 99 4e-18 tr|Q5YYT5|Q5YYT5_NOCFA Tax_Id=37329 SubName: Full=Putative trans... 98 5e-18 tr|D3F157|D3F157_CONWI Tax_Id=469383 SubName: Full=Transcription... 98 6e-18 tr|D6AVB8|D6AVB8_STRFL Tax_Id=457431 SubName: Full=Regulatory pr... 97 8e-18 tr|A0QT29|A0QT29_MYCS2 Tax_Id=246196 SubName: Full=Transcription... 97 1e-17 tr|D3FED4|D3FED4_CONWI Tax_Id=469383 SubName: Full=Transcription... 96 3e-17 tr|C6WIN9|C6WIN9_ACTMD Tax_Id=446462 SubName: Full=Transcription... 95 4e-17 tr|A1T4E9|A1T4E9_MYCVP Tax_Id=350058 SubName: Full=Regulatory pr... 95 5e-17 >tr|A0QTM9|A0QTM9_MYCS2 Tax_Id=246196 SubName: Full=DNA-binding HTH domain containing protein, putative;[Mycobacterium smegmatis] Length = 888 Score = 1356 bits (3509), Expect = 0.0 Identities = 725/888 (81%), Positives = 725/888 (81%) Query: 1 MLCGRDRELSELGEHVAAAEHTARLVVLTGEPGIGKTALLRDLTQRHGAWWALGASWETD 60 MLCGRDRELSELGEHVAAAEHTARLVVLTGEPGIGKTALLRDLTQRHGAWWALGASWETD Sbjct: 1 MLCGRDRELSELGEHVAAAEHTARLVVLTGEPGIGKTALLRDLTQRHGAWWALGASWETD 60 Query: 61 LPGGVLAQLMQDDVPDDPLDGAAHLVDHVRAAGVRLLLVDDAHHADVESLQALSTLVRHQ 120 LPGGVLAQLMQDDVPDDPLDGAAHLVDHVRAAGVRLLLVDDAHHADVESLQALSTLVRHQ Sbjct: 61 LPGGVLAQLMQDDVPDDPLDGAAHLVDHVRAAGVRLLLVDDAHHADVESLQALSTLVRHQ 120 Query: 121 RDLPVLVVLATQSVDALPIPLAADDVVELTGLPVAAVVELARLRGITIHPTLADRLTRHA 180 RDLPVLVVLATQSVDALPIPLAADDVVELTGLPVAAVVELARLRGITIHPTLADRLTRHA Sbjct: 121 RDLPVLVVLATQSVDALPIPLAADDVVELTGLPVAAVVELARLRGITIHPTLADRLTRHA 180 Query: 181 GGNPRDVLALFDEVPASAWARLDSSLPAPRHVVERVATQLDSCGPXXXXXXXXXXXXXXX 240 GGNPRDVLALFDEVPASAWARLDSSLPAPRHVVERVATQLDSCGP Sbjct: 181 GGNPRDVLALFDEVPASAWARLDSSLPAPRHVVERVATQLDSCGPAGRALVQALAVLGAA 240 Query: 241 XXXXXXXXXXXXXXXXXXXXXGLSGPSEPLAALDEAVDAGLVTHVVHFEPRLTDGLTGPA 300 GLSGPSEPLAALDEAVDAGLVTHVVHFEPRLTDGLTGPA Sbjct: 241 GGGDATDATDTVTLAEAADLAGLSGPSEPLAALDEAVDAGLVTHVVHFEPRLTDGLTGPA 300 Query: 301 VLTLLGXXXXXXXXXXXXXVITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360 VLTLLG VIT Sbjct: 301 VLTLLGARATAEAHRRAAEVITDPRRRLRHRVAAAAAPDEALAGEVDALARASGADGAWA 360 Query: 361 XXXTLFHDASRLTSDPLLRDERLTRSXXXXXXXXXXXXXXQLIPVVESLRETPLRNAVLA 420 TLFHDASRLTSDPLLRDERLTRS QLIPVVESLRETPLRNAVLA Sbjct: 361 LAATLFHDASRLTSDPLLRDERLTRSVDALVAAGDCGAAAQLIPVVESLRETPLRNAVLA 420 Query: 421 YLAILRGRATEAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRGRGTELVRWADTAL 480 YLAILRGRATEAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRGRGTELVRWADTAL Sbjct: 421 YLAILRGRATEAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRGRGTELVRWADTAL 480 Query: 481 RLADRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTLGRGWLQLI 540 RLADRESPTAVES YDELAERITHGAQAQRVTLGRGWLQLI Sbjct: 481 RLADRESPTAVESAAVRGLGLAAAGRAEQATAAYDELAERITHGAQAQRVTLGRGWLQLI 540 Query: 541 RDDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAAS 600 RDDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAAS Sbjct: 541 RDDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAAS 600 Query: 601 SGITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQVAEAEA 660 SGITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQVAEAEA Sbjct: 601 SGITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQVAEAEA 660 Query: 661 DYPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEFLRPHEEVA 720 DYPK GTVLTEPGYWPWPDVLANALVIDGALDEADEFLRPHEEVA Sbjct: 661 DYPKVRRVLEPLAALAARAPGTVLTEPGYWPWPDVLANALVIDGALDEADEFLRPHEEVA 720 Query: 721 RERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARVNFAYGQTL 780 RERGHRSAM FEESLALLDGLPLRYDRARVNFAYGQTL Sbjct: 721 RERGHRSAMARLGYARGRLLGARGELSAARARFEESLALLDGLPLRYDRARVNFAYGQTL 780 Query: 781 RRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVELTPQEDAV 840 RRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVELTPQEDAV Sbjct: 781 RRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVELTPQEDAV 840 Query: 841 TALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAALRR 888 TALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAALRR Sbjct: 841 TALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAALRR 888 >tr|Q1BCA2|Q1BCA2_MYCSS Tax_Id=164756 SubName: Full=Transcriptional regulator, LuxR family;[Mycobacterium sp.] Length = 881 Score = 802 bits (2072), Expect = 0.0 Identities = 460/886 (51%), Positives = 539/886 (60%), Gaps = 24/886 (2%) Query: 4 GRDRELSELGEHVAAAEHT-ARLVVLTGEPGIGKTALLRDLTQRHG-AWWALGASWETDL 61 GRDREL+EL AA + A +V + G PGIGK+ LL L HG A A WE D+ Sbjct: 17 GRDRELTELAARCAATVTSGADVVAVLGPPGIGKSTLLNRLATDHGHAHTARALPWEADV 76 Query: 62 PGGVLAQLMQDDVPDDPLDGAAHLVDHVRAAGVRLLLVDDAHHADVESLQALSTLVRHQR 121 PG VL QL+Q+D+ DP AA L+D V A L++VDDA + D SLQ L T VRH R Sbjct: 77 PGAVLGQLLQEDMTADP---AARLLDRVTAHRPALVIVDDAEYCDALSLQVLETAVRHHR 133 Query: 122 DLPVLVVLATQSVDALPIPLAADDVVELTGLPVAAVVELARLRGITIHPTLADRLTRHAG 181 L +LVVLA ++ D + + +V LTGL A + ELA LRG +HPT+ D LTRH Sbjct: 134 SLALLVVLAMRNPDFAAMRFVSAEV-RLTGLDTAGMAELASLRGRVLHPTMVDLLTRHTE 192 Query: 182 GNPRDVLALFDEVPASAWARLDSSLPAPRHVVERVATQLDSCGPXXXXXXXXXXXXXXXX 241 GNPRD LAL EVPA+ W+R D+ LPAP H V V ++L+ C Sbjct: 193 GNPRDALALLTEVPAAVWSRHDAQLPAPAHTVSAVRSRLEGCDAHGRALVEALAVLGDGG 252 Query: 242 XXXXXXXXXXXXXXXXXXXXGLSGPSEPLAALDEAVDAGLVTHVVHFEPRLTDGLTGPAV 301 L+G EPL+A+D+AV A L+T F L L AV Sbjct: 253 SLGEAAQ--------------LAGVDEPLSAVDQAVGAELITTTTGFGVALRSSLVRSAV 298 Query: 302 LTLLGXXXXXXXXXXXXXVITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 361 L ++G V+ Sbjct: 299 LEVMGAHAAGDAHRRAADVVDDPVRRLRHLVAATPVPDAALADQVDAMARERGAEGAWAE 358 Query: 362 XXTLFHDASRLTSDPLLRDERLTRSXXXXXXXXXXXXXXQLIPVVESLRETPLRNAVLAY 421 +LF +A RLT D LLRD+RLTRS L P VESLRETPLR+A LAY Sbjct: 359 AASLFREAGRLTPDALLRDDRLTRSVDALVAAGDTAGAAALTPAVESLRETPLRDAALAY 418 Query: 422 LAILRGRATEAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRGRGTELVRWADTALR 481 LAI+RGRA EA+VRLRRAW IVNA+RDPE AALIA RYVLH+L+R RG E+V+WAD A+ Sbjct: 419 LAIVRGRAAEADVRLRRAWGIVNADRDPEAAALIAGRYVLHALMRCRGAEIVQWADRAIE 478 Query: 482 LADRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTLGRGWLQLIR 541 L+ +SP VE+ YDEL++RI +GAQAQR+ +GRGWLQL Sbjct: 479 LSGDDSPAGVEAAAIRGLGLSAVGHSARAAAAYDELSDRIRYGAQAQRIAMGRGWLQLAG 538 Query: 542 DDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAASS 601 DD+DGARS+LE A++T LGGS+RI LWA+ WLAR F++GDWD AL+TV GR AASS Sbjct: 539 DDLDGARSSLEGAVSTTELGGSARIALWALGWLARVQFLTGDWDQALSTVERGRLTAASS 598 Query: 602 GITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQVAEAEAD 661 GI + TPLLEW A QI ALRGD+E A AAV+ AD VTQ YEMM + T LARAQVAEAEAD Sbjct: 599 GIVLVTPLLEWTATQIHALRGDFEAAQAAVRTADTVTQGYEMMHLATFLARAQVAEAEAD 658 Query: 662 YPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEFLRPHEEVAR 721 Y + TEP WPW DVLANA+V+DG D AD FL PHE+ A Sbjct: 659 YAGVRRALEPLRRMSQH----ITTEPALWPWADVLANAMVLDGQPDAADAFLGPHEQRAD 714 Query: 722 ERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARVNFAYGQTLR 781 R RS F+ESLALLDGLPLRYD ARVNFAYGQTLR Sbjct: 715 RRAQRSTRARLGYARGRILGAAGDINAARRAFDESLALLDGLPLRYDLARVNFAYGQTLR 774 Query: 782 RAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVELTPQEDAVT 841 RAGKRRDADAVI+TARDLYLSLGA TYVARC+RELKAGG+H +RG R ELTPQEDAVT Sbjct: 775 RAGKRRDADAVISTARDLYLSLGAQTYVARCERELKAGGVHVVRGPRGHAELTPQEDAVT 834 Query: 842 ALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAALR 887 LVAQGLSNREVAAELYVSPKTVQYHLTR+YAKLGVRSR ELAALR Sbjct: 835 TLVAQGLSNREVAAELYVSPKTVQYHLTRIYAKLGVRSRTELAALR 880 >tr|A1UCP2|A1UCP2_MYCSK Tax_Id=189918 SubName: Full=Transcriptional regulator, LuxR family;[Mycobacterium sp.] Length = 881 Score = 802 bits (2072), Expect = 0.0 Identities = 460/886 (51%), Positives = 539/886 (60%), Gaps = 24/886 (2%) Query: 4 GRDRELSELGEHVAAAEHT-ARLVVLTGEPGIGKTALLRDLTQRHG-AWWALGASWETDL 61 GRDREL+EL AA + A +V + G PGIGK+ LL L HG A A WE D+ Sbjct: 17 GRDRELTELAARCAATVTSGADVVAVLGPPGIGKSTLLNRLATDHGHAHTARALPWEADV 76 Query: 62 PGGVLAQLMQDDVPDDPLDGAAHLVDHVRAAGVRLLLVDDAHHADVESLQALSTLVRHQR 121 PG VL QL+Q+D+ DP AA L+D V A L++VDDA + D SLQ L T VRH R Sbjct: 77 PGAVLGQLLQEDMTADP---AARLLDRVTAHRPALVIVDDAEYCDALSLQVLETAVRHHR 133 Query: 122 DLPVLVVLATQSVDALPIPLAADDVVELTGLPVAAVVELARLRGITIHPTLADRLTRHAG 181 L +LVVLA ++ D + + +V LTGL A + ELA LRG +HPT+ D LTRH Sbjct: 134 SLALLVVLAMRNPDFAAMRFVSAEV-RLTGLDTAGMAELASLRGRVLHPTMVDLLTRHTE 192 Query: 182 GNPRDVLALFDEVPASAWARLDSSLPAPRHVVERVATQLDSCGPXXXXXXXXXXXXXXXX 241 GNPRD LAL EVPA+ W+R D+ LPAP H V V ++L+ C Sbjct: 193 GNPRDALALLTEVPAAVWSRHDAQLPAPAHTVSAVRSRLEGCDAHGRALVEALAVLGDGG 252 Query: 242 XXXXXXXXXXXXXXXXXXXXGLSGPSEPLAALDEAVDAGLVTHVVHFEPRLTDGLTGPAV 301 L+G EPL+A+D+AV A L+T F L L AV Sbjct: 253 SLGEAAQ--------------LAGVDEPLSAVDQAVGAELITTTTGFGVALRSSLVRSAV 298 Query: 302 LTLLGXXXXXXXXXXXXXVITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 361 L ++G V+ Sbjct: 299 LEVMGAHAAGDAHRRAADVVDDPVRRLRHLVAATPVPDAALADQVDAMARERGAEGAWAE 358 Query: 362 XXTLFHDASRLTSDPLLRDERLTRSXXXXXXXXXXXXXXQLIPVVESLRETPLRNAVLAY 421 +LF +A RLT D LLRD+RLTRS L P VESLRETPLR+A LAY Sbjct: 359 AASLFREAGRLTPDALLRDDRLTRSVDALVAAGDTAGAAALTPAVESLRETPLRDAALAY 418 Query: 422 LAILRGRATEAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRGRGTELVRWADTALR 481 LAI+RGRA EA+VRLRRAW IVNA+RDPE AALIA RYVLH+L+R RG E+V+WAD A+ Sbjct: 419 LAIVRGRAAEADVRLRRAWGIVNADRDPEAAALIAGRYVLHALMRCRGAEIVQWADRAIE 478 Query: 482 LADRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTLGRGWLQLIR 541 L+ +SP VE+ YDEL++RI +GAQAQR+ +GRGWLQL Sbjct: 479 LSGDDSPAGVEAAAIRGLGLSAVGHSARAAAAYDELSDRIRYGAQAQRIAMGRGWLQLAG 538 Query: 542 DDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAASS 601 DD+DGARS+LE A++T LGGS+RI LWA+ WLAR F++GDWD AL+TV GR AASS Sbjct: 539 DDLDGARSSLEGAVSTTELGGSARIALWALGWLARVQFLTGDWDQALSTVERGRLTAASS 598 Query: 602 GITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQVAEAEAD 661 GI + TPLLEW A QI ALRGD+E A AAV+ AD VTQ YEMM + T LARAQVAEAEAD Sbjct: 599 GIVLVTPLLEWTATQIHALRGDFEAAQAAVRTADTVTQGYEMMHLATFLARAQVAEAEAD 658 Query: 662 YPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEFLRPHEEVAR 721 Y + TEP WPW DVLANA+V+DG D AD FL PHE+ A Sbjct: 659 YAGVRRALEPLRRMSQH----ITTEPALWPWADVLANAMVLDGQPDAADAFLGPHEQRAD 714 Query: 722 ERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARVNFAYGQTLR 781 R RS F+ESLALLDGLPLRYD ARVNFAYGQTLR Sbjct: 715 RRAQRSTRARLGYARGRILGAAGDINAARRAFDESLALLDGLPLRYDLARVNFAYGQTLR 774 Query: 782 RAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVELTPQEDAVT 841 RAGKRRDADAVI+TARDLYLSLGA TYVARC+RELKAGG+H +RG R ELTPQEDAVT Sbjct: 775 RAGKRRDADAVISTARDLYLSLGAQTYVARCERELKAGGVHVVRGPRGHAELTPQEDAVT 834 Query: 842 ALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAALR 887 LVAQGLSNREVAAELYVSPKTVQYHLTR+YAKLGVRSR ELAALR Sbjct: 835 TLVAQGLSNREVAAELYVSPKTVQYHLTRIYAKLGVRSRTELAALR 880 >tr|A3PWC9|A3PWC9_MYCSJ Tax_Id=164757 SubName: Full=Transcriptional regulator, LuxR family;[Mycobacterium sp.] Length = 876 Score = 799 bits (2063), Expect = 0.0 Identities = 458/886 (51%), Positives = 538/886 (60%), Gaps = 24/886 (2%) Query: 4 GRDRELSELGEHVAAAEHT-ARLVVLTGEPGIGKTALLRDLTQRHG-AWWALGASWETDL 61 GRDREL+EL AA + A +V + G PGIGK+ LL L HG A A WE D+ Sbjct: 12 GRDRELAELAARCAATVASGADVVAVLGPPGIGKSTLLNRLATDHGHAHTARALPWEADV 71 Query: 62 PGGVLAQLMQDDVPDDPLDGAAHLVDHVRAAGVRLLLVDDAHHADVESLQALSTLVRHQR 121 PG VL QL+Q+DV DP AA L+D V A L++VDDA + D S Q L T VRH R Sbjct: 72 PGAVLGQLLQEDVTADP---AARLLDRVTAHHPALVIVDDAEYCDALSRQVLETAVRHHR 128 Query: 122 DLPVLVVLATQSVDALPIPLAADDVVELTGLPVAAVVELARLRGITIHPTLADRLTRHAG 181 L +LVVLA ++ D + + +V LTGL A + ELA LRG +HPT+ D LTRH Sbjct: 129 SLALLVVLAMRNPDFAAMRFVSAEV-RLTGLDTAGMAELASLRGRVLHPTMVDLLTRHTE 187 Query: 182 GNPRDVLALFDEVPASAWARLDSSLPAPRHVVERVATQLDSCGPXXXXXXXXXXXXXXXX 241 GNPRD LAL EVPA+ W+R D+ LPAP H V V ++L+ C Sbjct: 188 GNPRDALALLTEVPAAVWSRHDAQLPAPAHTVSAVRSRLERCDAHGRALVEALAVLGDGG 247 Query: 242 XXXXXXXXXXXXXXXXXXXXGLSGPSEPLAALDEAVDAGLVTHVVHFEPRLTDGLTGPAV 301 L+G EPL+A+D+AVDA L+T F L L AV Sbjct: 248 SLGEATR--------------LAGIDEPLSAVDQAVDAELITTTTGFGVALRSSLVRSAV 293 Query: 302 LTLLGXXXXXXXXXXXXXVITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 361 L ++G ++ Sbjct: 294 LEVMGAHAAGDAHRRAAGIVDDPVRRLRHLVAATPVPDAALADQVDAMARERGAEGAWAE 353 Query: 362 XXTLFHDASRLTSDPLLRDERLTRSXXXXXXXXXXXXXXQLIPVVESLRETPLRNAVLAY 421 +LF +A RL+ D L RD+RLTRS L P VESLRETPLR+A LAY Sbjct: 354 AASLFREAGRLSPDALQRDDRLTRSVDALVAAGDTAGAAALTPAVESLRETPLRDAALAY 413 Query: 422 LAILRGRATEAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRGRGTELVRWADTALR 481 LAI+RGRA EA+VRLRRAW IVNA+RDPE AALIA RYVLH+L+R RG E+V+WAD A+ Sbjct: 414 LAIVRGRAAEADVRLRRAWGIVNADRDPEAAALIAGRYVLHALMRCRGAEIVQWADRAIE 473 Query: 482 LADRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTLGRGWLQLIR 541 L+ +SP VE+ YDEL++RI +GAQAQR+ +GRGWLQL Sbjct: 474 LSGDDSPAGVEAAAIRGLGLSAVGHSARAAAAYDELSDRIRYGAQAQRIAMGRGWLQLAG 533 Query: 542 DDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAASS 601 DD+DGARS+LE A++T LGGS+RI LWA+ WLAR F++GDWD AL+TV GR AASS Sbjct: 534 DDLDGARSSLEGAVSTTELGGSARIALWALGWLARVQFLTGDWDQALSTVERGRLTAASS 593 Query: 602 GITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQVAEAEAD 661 GI + TPLLEW A QI ALRGD+E A AAV+ AD VTQ YEMM + T LARAQVAEAEAD Sbjct: 594 GIVLVTPLLEWTATQIHALRGDFEAAQAAVRTADTVTQGYEMMHLATFLARAQVAEAEAD 653 Query: 662 YPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEFLRPHEEVAR 721 Y + TEP WPW DVLANA+V+DG D AD FL PHE+ A Sbjct: 654 YAGVRRALEPLRRMSQH----ITTEPALWPWADVLANAMVLDGQPDAADAFLGPHEQRAD 709 Query: 722 ERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARVNFAYGQTLR 781 R RS F+ESLALLDGLPLRYD ARVNFAYGQTLR Sbjct: 710 RRAQRSTRARLGYARGRILGAAGDINAARRAFDESLALLDGLPLRYDLARVNFAYGQTLR 769 Query: 782 RAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVELTPQEDAVT 841 RAGKRRDADAVI+TARDLYLSLGA TYVARC+RELKAGG+H +RG R ELTPQEDAVT Sbjct: 770 RAGKRRDADAVISTARDLYLSLGAQTYVARCERELKAGGVHVVRGPRGHAELTPQEDAVT 829 Query: 842 ALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAALR 887 LVAQGLSNREVAAELYVSPKTVQYHLTR+YAKLGVRSR ELAALR Sbjct: 830 TLVAQGLSNREVAAELYVSPKTVQYHLTRIYAKLGVRSRTELAALR 875 >tr|C7MUZ3|C7MUZ3_SACVD Tax_Id=471857 SubName: Full=Transcriptional regulator, LuxR family;[Saccharomonospora viridis] Length = 894 Score = 608 bits (1568), Expect = e-171 Identities = 387/899 (43%), Positives = 471/899 (52%), Gaps = 32/899 (3%) Query: 2 LCGRDRELSELGEHVA-AAEHTARLVVLTGEPGIGKTALLRDLTQRHGA--WWALGASWE 58 L GRD L+EL + EH +R ++LTG G G+TAL+ H A+GASWE Sbjct: 8 LIGRDTVLAELRDQARRVGEHGSRFLLLTGVSGCGRTALVERFAAHHDGPVLRAVGASWE 67 Query: 59 TDLPGGVLAQLMQDDVP-DDPLDGAAHLVDHVRA-AGVRLLLVDDAHHADVESLQALSTL 116 T G++ QL V DP+ A H+ AG L++VDDAH AD SLQ L++ Sbjct: 68 TTRDYGIIDQLAPGAVDVSDPVAAAERFARHLAGLAGTVLVVVDDAHWADEASLQTLAST 127 Query: 117 VRHQRDLPVLVVLATQSVDA-LPIPLAA------DDVVELTGLPVAAVVELARLRGITIH 169 VRH L +LVV D +P + A + + L A V +A GI + Sbjct: 128 VRHHPRLRLLVVATAVEGDTRVPAGIGALLRRIATVEIPVEPLTAAEVAAVAASFGIVLS 187 Query: 170 PTLADRLTRHAGGNPRDVLALFDEVPASAWARLDSSLPAPRHVVERVATQLDSCGPXXXX 229 P +AD L RH GG R V L EVP W+R D LPAP V RV L C Sbjct: 188 PPVADTLCRHTGGRVRYVRELLREVPRRTWSRFDPVLPAPAAVSARVRDLLADCSDAARR 247 Query: 230 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLSGPSEPLAALDEAVDAGLVTHVVHFE 289 G E L A+DEA AGLV H Sbjct: 248 FVGAVAVLGPAAAVREAAALAEL------------GDEEVLDAVDEACTAGLVVLTAHGP 295 Query: 290 PRLT--DGLTGPAVLTLLGXXXXXXXXXXXXXVITXXXXXXXXXXXXXXXXXXXXXXXXX 347 ++ D L AVL ++G ++ Sbjct: 296 AEISPADSLVRAAVLEIMGPAAAARAYRRAADLVDDRVRRLRLLVAASFAPDQELADRLD 355 Query: 348 XXXXXXXXXXXXXXXXTLFHDASRLTSDPLLRDERLTRSXXXXXXXXXXXXXXQLIPVVE 407 +LF DASRLT D LLR+ RLTR+ L+P VE Sbjct: 356 AVAAERAAEGAWAEAASLFTDASRLTEDRLLRERRLTRAVDALIGSGDAFGAAALVPEVE 415 Query: 408 SLRETPLRNAVLAYLAILRGRATEAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRG 467 SLRETPLRNAVL YLAI+RGRA EAE RL RAW++VN +RDP+ AALI QR+VLH+LVR Sbjct: 416 SLRETPLRNAVLGYLAIVRGRAAEAEARLDRAWELVNVDRDPDVAALICQRHVLHALVRC 475 Query: 468 RGTELVRWADTALRLADRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQA 527 R ELV WAD A+ LA ++P +E+ Y LA+R+ HGAQA Sbjct: 476 RPDELVAWADRAVTLAGPDAPAGIEAAAIRGLGLAARGRVEQAKAAYATLADRVRHGAQA 535 Query: 528 QRVTLGRGWLQLIRDDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAA 587 QRV +GRGWL L D VD AR+ LE+A+ T GGS+RI+LWA AWLARA F++G+WD + Sbjct: 536 QRVLMGRGWLDLTLDQVDDARAALETAVPTTFSGGSTRISLWARAWLARAQFLAGEWDDS 595 Query: 588 LATVVSGRDLAASSGITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIP 647 L TV L +GI + PLL W A I ALRG W A ++ D V Q+YE+MR+ Sbjct: 596 LRTVAEAATLLDRTGIVLAGPLLHWTGATIHALRGQWRQAERQLRRIDAVPQEYELMRLC 655 Query: 648 TILARAQVAEAEADYPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALD 707 LARAQ+AEA AD T L + G WPW D+ A+ALV Sbjct: 656 ACLARAQIAEARAD---AAGVLRALRPLAQGWITTHLDDTGSWPWADLYAHALVQQNRYT 712 Query: 708 EADEFLRPHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRY 767 EADEFL E R RS F+ +L LL LPLRY Sbjct: 713 EADEFLTRRENRVGLRHSRSERARLAAARGRLLGAQGDLDRAINAFDRALTLLADLPLRY 772 Query: 768 DRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGS 827 D+ARVNFAYGQTLRRAGKRRDAD ++TAR+L+ LGA TYV+RCDRELKAGG G+ Sbjct: 773 DQARVNFAYGQTLRRAGKRRDADVALSTARELFAGLGAATYVSRCDRELKAGG---QPGA 829 Query: 828 RDSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAAL 886 R ELTPQE AV+ LVA+GLSNREVAAELYVS KTVQYHLTR+YAKLG+RSRAELAAL Sbjct: 830 RADTELTPQEQAVSQLVARGLSNREVAAELYVSTKTVQYHLTRIYAKLGIRSRAELAAL 888 >tr|D0L562|D0L562_GORB4 Tax_Id=526226 SubName: Full=Regulatory protein LuxR;[Gordonia bronchialis] Length = 893 Score = 544 bits (1401), Expect = e-152 Identities = 289/525 (55%), Positives = 346/525 (65%), Gaps = 2/525 (0%) Query: 364 TLFHDASRLTSDPLLRDERLTRSXXXXXXXXXXXXXXQLIPVVESLRETPLRNAVLAYLA 423 +L A RLT + L+RDER TRS LIP +E+LRET LRNA LAYLA Sbjct: 371 SLLRQAGRLTDEGLVRDERQTRSVDALLSAGDCTAAAALIPAIETLRETALRNATLAYLA 430 Query: 424 ILRGRATEAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRGRGTELVRWADTALRLA 483 ILRGR+ EAEVRL RAW IVN ERDP+ A+LIA R VLH+L+RG+G +L+ WAD A+ L Sbjct: 431 ILRGRSAEAEVRLDRAWSIVNTERDPDVASLIAARRVLHALIRGQGADLIEWADRAVELT 490 Query: 484 DRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTLGRGWLQLIRDD 543 SPT VE+ Y ++E I HGAQAQR T+GRGWLQL D+ Sbjct: 491 GPTSPTGVEATVIRGLGEAWSGHPQRGIDTYHTVSEAIRHGAQAQRATMGRGWLQLGVDE 550 Query: 544 VDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAASSGI 603 +D AR++LE+A++ A LGGS RITLW++AWLAR F G+WDAA+ G LAA+SGI Sbjct: 551 LDAARTSLETAVSMARLGGSDRITLWSLAWLARVRFAIGEWDAAVHAAREGLALAATSGI 610 Query: 604 TITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQVAEAEADYP 663 TI T LLEW AQI ++RGDW+ AH AV+ A+ DY M IP LARA VAEA ADY Sbjct: 611 TIATGLLEWTLAQILSMRGDWDGAHEAVRHAESAGADYPTMEIPARLARAHVAEAAADYA 670 Query: 664 KXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEFLRPHEEVARER 723 L EPG+WPW DVLANAL+++G LD+A+ L HE+ A +R Sbjct: 671 TVIHALSPLVGLSRSVPA--LVEPGFWPWVDVLANALIVEGRLDDAETLLAGHEQRAADR 728 Query: 724 GHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARVNFAYGQTLRRA 783 H SA FE S+ L+ P RYD ARVNFAYGQTLRRA Sbjct: 729 AHPSAQARLGYARGRLLGARGDINGARGVFERSVGLVQSSPNRYDSARVNFAYGQTLRRA 788 Query: 784 GKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVELTPQEDAVTAL 843 GKRRDAD V+ ARD++L+LGA TYV RCDRELKAGGL+ G RD V LTPQE++VTAL Sbjct: 789 GKRRDADRVMTAARDIFLALGAQTYVDRCDRELKAGGLNTSPGRRDDVHLTPQEESVTAL 848 Query: 844 VAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAALRR 888 VAQGLSN+EVAAEL++S KTVQYHLTR+YAKLG+RSRAEL A RR Sbjct: 849 VAQGLSNKEVAAELFISTKTVQYHLTRIYAKLGLRSRAELVAARR 893 Score = 137 bits (346), Expect = 6e-30 Identities = 93/232 (40%), Positives = 124/232 (53%), Gaps = 16/232 (6%) Query: 4 GRDRELSELGEHVAAAEHTA-RLVVLTGEPGIGKTALLRD----LTQRHGA-------WW 51 GR EL L E V AE R V + G+PG+GK+ALLR L+ H + Sbjct: 12 GRQPELDVLAEEVRHAERGGVRRVAVIGQPGVGKSALLRAAGDYLSADHPTADRSAEVLF 71 Query: 52 ALGASWETDLPGGVLAQLMQDDVPDDPLDGAAHLVDHVRAAGVRLLLVDDAHHADVESLQ 111 A + + PG +LAQL+Q + P + L+ + AG ++LVDDAHHAD ES Sbjct: 72 ATVPADRSAAPGAMLAQLLQTE-PGPIAEMTDALLSRLSGAGPVVVLVDDAHHADDESRS 130 Query: 112 ALSTLVRHQRDLPVLVVLATQSVDALPIPLAADDVVELTGLPVAAVVELARLRGITIHPT 171 AL+ L+ R PV+VV A + + P+ AD + L GL +V ELAR RGI +HP+ Sbjct: 131 ALAGLLARHRSSPVVVVEAVSAETSSPL---ADTELRLGGLDPESVGELARDRGIILHPS 187 Query: 172 LADRLTRHAGGNPRDVLALFDEVPASAWARLDSSLPAPRHVVERVATQLDSC 223 + D L RH G PRDVL L DE P + W++ LPAP + A L SC Sbjct: 188 MRDHLWRHTAGVPRDVLGLLDEAPRTLWSQPGGDLPAPARTRDETARHLASC 239 >tr|A4FHX0|A4FHX0_SACEN Tax_Id=405948 SubName: Full=Transcriptional regulator, LuxR family;[Saccharopolyspora erythraea] Length = 900 Score = 536 bits (1382), Expect = e-150 Identities = 289/524 (55%), Positives = 343/524 (65%), Gaps = 3/524 (0%) Query: 364 TLFHDASRLTSDPLLRDERLTRSXXXXXXXXXXXXXXQLIPVVESLRETPLRNAVLAYLA 423 +L DASRLT D L R+ R++R+ L+P VESLRETPLRNAVL YLA Sbjct: 371 SLLIDASRLTEDRLERESRISRAVDALIGAGDVSAAAALVPEVESLRETPLRNAVLGYLA 430 Query: 424 ILRGRATEAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRGRGTELVRWADTALRLA 483 ++RGR EAE RL RAW +VNAERDP+ AALI QRYVLH+LVR R ELV WAD A+ LA Sbjct: 431 VVRGRVAEAESRLGRAWSLVNAERDPDVAALICQRYVLHALVRCRAGELVTWADRAISLA 490 Query: 484 DRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTLGRGWLQLIRDD 543 ++P AVE+ Y L ER+ HGAQAQRV + RGWL L+ D Sbjct: 491 GPDAPAAVEAAAIRGLGLAATGRAGQARRDYARLGERVRHGAQAQRVMMARGWLDLLTDA 550 Query: 544 VDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAASSGI 603 VD AR+ LESA+ T LGGS+RI+LWA AWLARA ++G WD A+ TV L SGI Sbjct: 551 VDDARAELESAVPTTFLGGSTRISLWARAWLARAQLLAGAWDDAVRTVRDAAPLLERSGI 610 Query: 604 TITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQVAEAEADYP 663 +T PLL W + ALRG+WE A A+ D QDYE+MR+PT LARAQVAEA AD Sbjct: 611 VLTGPLLHWTEVTVHALRGEWEQAEQALLRCDAGPQDYEIMRVPTYLARAQVAEARAD-- 668 Query: 664 KXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEFLRPHEEVARER 723 G + EPG+WPW D+ A+ALV++G +EADEFL PHE +A R Sbjct: 669 -SAGVLRALHPLTQSWAGGGIDEPGHWPWHDMYAHALVLEGRHEEADEFLLPHERLAATR 727 Query: 724 GHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARVNFAYGQTLRRA 783 H SA FE++L LL+GLPLRYD ARV FAYGQTLRRA Sbjct: 728 EHASARARLAAARGRLLGAQGDPAAATTAFEQALELLEGLPLRYDHARVAFAYGQTLRRA 787 Query: 784 GKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVELTPQEDAVTAL 843 GKRR+ADAV+ TARD + ++GA TYV RCDRELKAGG+H LR R ELTPQE+AV L Sbjct: 788 GKRREADAVLTTARDGFAAMGAATYVERCDRELKAGGVHTLRAERAFNELTPQEEAVARL 847 Query: 844 VAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAALR 887 VA+GLSNRE AAEL++S KTVQYHLTR+Y KLG+RSRAELAALR Sbjct: 848 VARGLSNREAAAELFLSTKTVQYHLTRIYTKLGIRSRAELAALR 891 Score = 151 bits (381), Expect = 5e-34 Identities = 97/236 (41%), Positives = 127/236 (53%), Gaps = 12/236 (5%) Query: 2 LCGRDRELSELGEHVA-AAEHTARLVVLTGEPGIGKTALLRDLTQRHG--AWWALGASWE 58 L G+ L+EL V A EH VV++G G GK+ L R L RH AWWA A WE Sbjct: 8 LIGQGDALAELEGLVREAGEHRCGFVVVSGAAGTGKSTLGRRLLARHEGPAWWATAAPWE 67 Query: 59 TDLPGGVLAQLMQD-DVPDDPLDGAAHLVDHVRAA-GVRLLLVDDAHHADVESLQALSTL 116 + P GV+AQ++ D DV P+ A + D + A+ G + +VDD H AD ESLQAL+++ Sbjct: 68 SRQPYGVVAQMLPDLDVGAGPVAVAERVADRLAASDGTTVAVVDDGHWADEESLQALASV 127 Query: 117 VRHQRDLPVLVVLATQSVDALP-------IPLAADDVVELTGLPVAAVVELARLRGITIH 169 VRH +LVV + D +P A + L+ L A V ELA RG+ +H Sbjct: 128 VRHHPRARLLVVAFAVTGDPHASAATLELLPRIATAEIRLSPLTAAQVNELAAARGVVLH 187 Query: 170 PTLADRLTRHAGGNPRDVLALFDEVPASAWARLDSSLPAPRHVVERVATQLDSCGP 225 P++A+RL H G R + L DEVPA+ W R D LPAP V RV L C P Sbjct: 188 PSIAERLCHHTQGAARHIAQLLDEVPAATWTRFDPGLPAPAAVAARVRELLAGCSP 243 >tr|A4T5V1|A4T5V1_MYCGI Tax_Id=350054 SubName: Full=Tetratricopeptide TPR_4;[Mycobacterium gilvum] Length = 683 Score = 517 bits (1332), Expect = e-144 Identities = 311/661 (47%), Positives = 373/661 (56%), Gaps = 25/661 (3%) Query: 4 GRDRELSELGEHVAAAEHTARLVV-LTGEPGIGKTALLRDLTQR-HGAWWALGASWETDL 61 GR +L EL AA VV + G PGIGKTALLR + + WA WE+ + Sbjct: 8 GRSGDLDELIRRTAATVSDGSAVVTVRGAPGIGKTALLRQVAATVPNSRWATAVPWESTV 67 Query: 62 PGGVLAQLMQDDVPDDPLDGAAHLVDHVRAAGVRLLLVDDAHHADVESLQALSTLVRHQR 121 G VL+QL P GA L + LL+VDDA HAD SLQALSTL+RH R Sbjct: 68 DGAVLSQL-------SPEPGAEQLARALAGDDPTLLVVDDAQHADSASLQALSTLIRHHR 120 Query: 122 DLPVLVVLATQSVDALPIPLAADDVVELTGLPVAAVVELARLRGITIHPTLADRLTRHAG 181 LPVL+VL T LP+P D + +TGL V V LA RG + + DRLTRH Sbjct: 121 SLPVLLVLVTDG-HPLPVPGLDGDELVMTGLDVREVAALASARGHVLPALMVDRLTRHTA 179 Query: 182 GNPRDVLALFDEVPASAWARLDSSLPAPRHVVERVATQLDSCGPXXXXXXXXXXXXXXXX 241 G+P V AL DE+PA W+RLD+ LPAPR VV +V +L + G Sbjct: 180 GHPGHVRALLDELPAQTWSRLDAPLPAPREVVAQVERELAAAGDGGRALAFALAVLGEEA 239 Query: 242 XXXXXXXXXXXXXXXXXXXXGLSGPSEPLAALDEAVDAGLVTHVVHFEPRLTDGLTGPAV 301 L+G +PLAA+ A AGLV EPRL D L AV Sbjct: 240 TLSEAVL--------------LAGIDDPLAAVAAATGAGLVRTGDPLEPRLRDPLAAAAV 285 Query: 302 LTLLGXXXXXXXXXXXXXVITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 361 L + G V+T Sbjct: 286 LDVCGVQATADAHRRAADVVTDPVARLRHRVAATPVPDEALADEVDALARSSGADGEWSR 345 Query: 362 XXTLFHDASRLTSDPLLRDERLTRSXXXXXXXXXXXXXXQLIPVVESLRETPLRNAVLAY 421 LF DA+RLT+ PLLRDERLTRS ++P VE+LRETPLRNA LAY Sbjct: 346 AAVLFRDAARLTAAPLLRDERLTRSVDALVAAGDCVGAAAMVPTVENLRETPLRNATLAY 405 Query: 422 LAILRGRATEAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRGRGTELVRWADTALR 481 LAILRGRATEAEVRLRRAWDIV+ +RD +TAA IAQR+VLH+LV +G ELV WAD AL Sbjct: 406 LAILRGRATEAEVRLRRAWDIVHIDRDTDTAAFIAQRHVLHALVHCQGEELVAWADRALA 465 Query: 482 LADRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTLGRGWLQLIR 541 LA+R+SP +E+ YD+L ER+ HGAQAQRV +GRGW+QL+R Sbjct: 466 LAERDSPAGIEAAAIRGLGLLASGQPRRAAAEYDDLHERVRHGAQAQRVVMGRGWVQLMR 525 Query: 542 DDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAASS 601 DDV+GARS+LESA+A A LGGS+RITLW+ AWLAR F G+WDAALA+V GR LA +S Sbjct: 526 DDVEGARSSLESAVAAAGLGGSTRITLWSHAWLARTQFSLGEWDAALASVAHGRRLAETS 585 Query: 602 GITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQVAEAEAD 661 GI + TPLLEW A QI+ALRGDWETAHAA AA +Y MMRIP +L RAQ+AEA+AD Sbjct: 586 GIVLVTPLLEWTAGQIAALRGDWETAHAAAHAA-AGGGEYAMMRIPALLVRAQIAEAQAD 644 Query: 662 Y 662 Y Sbjct: 645 Y 645 >tr|C1B102|C1B102_RHOOB Tax_Id=632772 SubName: Full=Putative LuxR family transcriptional regulator;[Rhodococcus opacus] Length = 903 Score = 511 bits (1316), Expect = e-142 Identities = 352/905 (38%), Positives = 443/905 (48%), Gaps = 44/905 (4%) Query: 4 GRDRELSELGEHVAAAEHTARLVVLT-GEPGIGKTALLRDLTQRHG---AWWALGASWET 59 GR REL++L + +VV+ G PGIGKT L+ H A+ A+ A W + Sbjct: 14 GRSRELADLESALHEMYGNVPVVVVVEGVPGIGKTTLVEHFLAAHPDLPAFSAVCAPWAS 73 Query: 60 DLPGGVLAQLMQDDVPD-DPLDGAAHLVDHVRAAGVR------LLLVDDAHHADVESLQA 112 GV QL+ V DPLD A + V A G R +++VDDAH AD+ SLQ+ Sbjct: 74 SRLFGVAEQLLGAAVTSPDPLDVAR---EFVTAVGPRAGDSPFVVVVDDAHWADLASLQS 130 Query: 113 LSTLVRHQRDLPVLVVLATQSVDALPIPLAADDVVE--------LTGLPVAAVVELAR-L 163 L++ V+ P ++VL T + D++E + L V+ LA L Sbjct: 131 LTSAVQ-LLGRPAVIVLVTNPEPPDGVRADVLDLLERHSRHRIRVRPLDVSDARALASSL 189 Query: 164 RGITIHPTLADRLTRHAGGNPRDVLALFDEVPASAWARLDSSLPAPRHVVERVATQLDSC 223 + + +A +L +H GNPR + L EV AW + LP P +V + L Sbjct: 190 AHVDLPTPVAHQLVQHTAGNPRHLTQLLQEVDPVAWGHWQAVLPVPHTFAAKVRSLLCES 249 Query: 224 GPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLSGPSEPLAALDEAVDAGLVT 283 P L+G P+ ALDE AGL+T Sbjct: 250 SPQSRALVEAAAILAGDPRFADAA--------------ALAGIEHPVEALDELHRAGLLT 295 Query: 284 HVVHFEPRLT---DGLTGPAVLTLLGXXXXXXXXXXXXXVITXXXXXXXXXXXXXXXXXX 340 H + LT AV LG ++ Sbjct: 296 AGEHRGVTVLTFPSPLTRAAVYRSLGPIRLRDLHDHAARIVEDEGRRLDHRAAAAPFADP 355 Query: 341 XXXXXXXXXXXXXXXXXXXXXXXTLFHDASRLTSDPLLRDERLTRSXXXXXXXXXXXXXX 400 +SRLT+D R+ RL R+ Sbjct: 356 ALADELDSYSASRATVGAWSAVADALIKSSRLTADRGEREHRLIRAVDALLGTGNLSQAL 415 Query: 401 QLIPVVESLRETPLRNAVLAYLAILRGRATEAEVRLRRAWDIVNAERDPETAALIAQRYV 460 P +ES E+PLR+AVL YLAI RGR EA+ L ++W + E DP TAALI QR V Sbjct: 416 AFAPEIESFPESPLRDAVLGYLAIQRGRPAEADALLTQSWTACDPETDPATAALICQRRV 475 Query: 461 LHSLVRGRGTELVRWADTALRLADRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAER 520 L SL R G +LV W A+ L D P+AVES YD L+ + Sbjct: 476 LDSLARWHGPDLVEWGRRAVALVDSADPSAVESAAIMGLGLAATGRIAEARAAYDTLSAK 535 Query: 521 ITHGAQAQRVTLGRGWLQLIRDDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFV 580 I GAQ+QR + RGWL L DD + AR LESA+ TA GS+RI+LWA AWLAR F Sbjct: 536 IALGAQSQRFDMARGWLDLALDDPESARQELESAVPTAFRMGSTRISLWAQAWLARTQFA 595 Query: 581 SGDWDAALATVVSGRDLAASSGITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQD 640 GDW+ A+ATV + + + PL+ W AQ ALRG+W AH ++ A + D Sbjct: 596 LGDWNGAIATVDRAAHQLEDATLDLLRPLVHWTGAQTHALRGNWPAAHEHLRLAAASSHD 655 Query: 641 YEMMRIPTILARAQVAEAEADYPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANAL 700 Y MM IP+ LARAQ AE EADY + EPG+W WPDV ANAL Sbjct: 656 YPMMFIPSSLARAQCAEVEADYAAVIRALEPLTRLEPREG---VDEPGFWQWPDVYANAL 712 Query: 701 VIDGALDEADEFLRPHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALL 760 V+ G +D+AD FL PHEE A ERGHRSAM FE +L L Sbjct: 713 VMAGHVDDADAFLTPHEERAAERGHRSAMARLGYARGRIAGARGDIDTARDVFENALTQL 772 Query: 761 DGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGG 820 D LPL YDRARVNFAYGQTLRRAGKRR+ADAV+ AR+ Y +LGA +YV RCDRELKAGG Sbjct: 773 DTLPLPYDRARVNFAYGQTLRRAGKRREADAVMQAAREGYSALGATSYVQRCDRELKAGG 832 Query: 821 LHQLRGSRDSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSR 880 L+ R ELTPQE AVT LVA G SN+E A EL++S KTVQYHLTRVYAKLG+RSR Sbjct: 833 LNVKRSRFTLEELTPQERAVTELVAGGASNKEAAGELFLSVKTVQYHLTRVYAKLGIRSR 892 Query: 881 AELAA 885 +ELAA Sbjct: 893 SELAA 897 >tr|D6A8F7|D6A8F7_9ACTO Tax_Id=566461 SubName: Full=Transcriptional regulator;[Streptomyces ghanaensis ATCC 14672] Length = 927 Score = 478 bits (1231), Expect = e-132 Identities = 339/935 (36%), Positives = 436/935 (46%), Gaps = 68/935 (7%) Query: 2 LCGRDRELSELGEHVAAAEHTA-RLVVLTGEPGIGKTALLRD-LTQRHG--------AWW 51 + GR E++ L +A+A A LV++ G GIGKTAL+ LT G Sbjct: 1 MIGRVGEVAALTRSMASARAGAPALVLVEGPAGIGKTALVEQALTAWRGRTEGSAPRVLR 60 Query: 52 ALGASWETDLPGGVLAQLMQ-------------DDVPDDPLDGAAHLV----DHVRAAGV 94 G +WE+DLP GV QL++ D D + G + ++ + Sbjct: 61 VTGVAWESDLPLGVADQLVRACGNGTGNGTFLPDPTAPDAVLGTSRILLRQWTTAQETEP 120 Query: 95 RLLLVDDAHHADVESLQALSTLVRHQRDLPVLVVLATQSV-----------DALPIPL-- 141 +++VDDAH AD ESL+A+ + VR + VLV+L + + LP+ Sbjct: 121 LVVIVDDAHWADAESLRAIRSTVRRMSNERVLVLLIARDEPYELYDMCRAHEDLPVSALR 180 Query: 142 -------AADDVVELTGLPVAAVVELAR-LRGITIHPTLADRLTRHAGGNPRDVLALFDE 193 D V L V LAR + G+T+ A L RH GNPR + L E Sbjct: 181 TLEFLDGCQDAAVRPGPLTAEDVRTLAREVHGLTLDLPAARHLCRHTRGNPRHLTQLLRE 240 Query: 194 VPASAWARLDSSLPAPRHVVERVATQLDSCGPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 253 +P W LPAP V +L CG Sbjct: 241 LPRETWHDWRPELPAPTRYAAAVRHRLAQCGESARRLVQACSVLGDDASLAEATE----- 295 Query: 254 XXXXXXXXGLSGPSEPLAALDEAVDAGLVTHVV---HFEPRLTDGLTGPAVLTLLGXXXX 310 L+G ++ L A+DEA AGL+T + + T L AVLT + Sbjct: 296 ---------LAGVADALPAVDEARAAGLLTATIDPGRAQLSFTHPLVRAAVLTGIPLTHR 346 Query: 311 XXXXXXXXXVITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLFHDAS 370 V A Sbjct: 347 AELHHRAVEVTADRGSRLAHRVAATSTADDALADELDAYAAERASAGEWSAVADTLVRAG 406 Query: 371 RLTSDPLLRDERLTRSXXXXXXXXXXXXXXQLIPVVESLRETPLRNAVLAYLAILRGRAT 430 RL++ +R++RL R+ +ES LR AVL YLAI+RGR Sbjct: 407 RLSTVRAVREDRLLRAVDAMIGAGDVPQATAFAAELESFPADILRGAVLGYLAIMRGRPA 466 Query: 431 EAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRGRGTELVRWADTALRLADRESPTA 490 EA+ L +AW+ + R + A I QR VLH+L R G LV WA A+ LAD + P+A Sbjct: 467 EADAFLAQAWERCESARHTDLMARICQRRVLHALGRFDGRALVAWARRAVELADPDDPSA 526 Query: 491 VESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTLGRGWLQLIRDDVDGARSN 550 +ES Y+ A ++ GAQ+QR LGRGW+ + D + AR Sbjct: 527 IESQAVLGLGLAATGRADEALAAYETAAAKLPGGAQSQRFQLGRGWVDIALDAPEDARRR 586 Query: 551 LESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAASSGITITTPLL 610 LE+A+ T GS+RI+LWA WLAR F G W AL TV A I + PL+ Sbjct: 587 LEAAVPTGYRMGSTRISLWAQGWLARTQFALGAWPEALETVQRAAVHLAEVRIELCRPLV 646 Query: 611 EWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQVAEAEADYPKXXXXXX 670 W AQI ALRGDWE A V A YE+M +P+ LARAQVAEA DY + Sbjct: 647 HWTGAQIRALRGDWEAAEHHVGEAHAAPHHYEVMLVPSCLARAQVAEARGDYERVVEALV 706 Query: 671 XXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEFLRPHEEVARERGHRSAMX 730 + EPG+W WPDV ANALV+ G LDEAD FL PHE++A R RSAM Sbjct: 707 PLVHLPQRLS---VGEPGFWSWPDVYANALVMTGRLDEADTFLAPHEDLAARRVRRSAMA 763 Query: 731 XXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARVNFAYGQTLRRAGKRRDAD 790 FE++LA L+ LPL YDRARVNFAYGQTLRRAGKRR+AD Sbjct: 764 RLGLARGRLTAARGDIDTARKEFEQALAHLEHLPLPYDRARVNFAYGQTLRRAGKRREAD 823 Query: 791 AVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVELTPQEDAVTALVAQGLSN 850 V+ ARD Y +LGA TYV RCDRELKAGGLH R + LTPQE AV LVA G +N Sbjct: 824 TVLKNARDAYAALGARTYVERCDRELKAGGLHTARLTPGLARLTPQEQAVARLVANGATN 883 Query: 851 REVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAA 885 ++ A EL++S KTVQYHLT VY+KLG+RSR+ELAA Sbjct: 884 QQAALELFISVKTVQYHLTHVYSKLGIRSRSELAA 918 >tr|Q0SE40|Q0SE40_RHOSR Tax_Id=101510 SubName: Full=Probable transcriptional regulator;[Rhodococcus sp.] Length = 900 Score = 460 bits (1183), Expect = e-127 Identities = 258/517 (49%), Positives = 311/517 (60%), Gaps = 3/517 (0%) Query: 369 ASRLTSDPLLRDERLTRSXXXXXXXXXXXXXXQLIPVVESLRETPLRNAVLAYLAILRGR 428 +SRLT+D R++RL R+ P +ES E+PLR+AVL YLAILRGR Sbjct: 381 SSRLTADRGEREQRLIRAVDALVGASNLPQALAFAPEIESFPESPLRDAVLGYLAILRGR 440 Query: 429 ATEAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRGRGTELVRWADTALRLADRESP 488 EA++ L ++W + + DP TAALI QR VL SLVR G +LV WA A+ L D P Sbjct: 441 PAEADLLLTQSWTACDPDTDPATAALICQRRVLDSLVRWHGPDLVEWASRAVALVDPGDP 500 Query: 489 TAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTLGRGWLQLIRDDVDGAR 548 +AVES YD L+ +I GAQ+QR + RGWL L DD + AR Sbjct: 501 SAVESAAIMGLGLAATGRIVEARAAYDTLSAKIALGAQSQRFDMARGWLDLALDDPESAR 560 Query: 549 SNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAASSGITITTP 608 LESA+ TA GS+RI+LWA AWLAR F GDW A+ATV + + + P Sbjct: 561 QELESAVPTAFRMGSTRISLWAQAWLARTQFALGDWSGAIATVDRAAHQLEDAALDLVRP 620 Query: 609 LLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQVAEAEADYPKXXXX 668 L+ W AQ ALRG+W A ++ A + DY MM IP+ LARAQ AE +ADY Sbjct: 621 LVHWTGAQTHALRGNWPAAQEHLRLAAASSHDYPMMFIPSSLARAQCAEVQADYAAVIRA 680 Query: 669 XXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEFLRPHEEVARERGHRSA 728 + EPG+W WPDV ANALV+ G +D+AD FL PHEE A ERGHRSA Sbjct: 681 LEPLTRLHPREG---IDEPGFWQWPDVYANALVMAGRVDDADAFLTPHEERASERGHRSA 737 Query: 729 MXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARVNFAYGQTLRRAGKRRD 788 M FE +L LD LPL YDRARVNFAYGQTLRRAGKRR+ Sbjct: 738 MARLGYARGRVAGARGDIDAARDVFETALTHLDTLPLPYDRARVNFAYGQTLRRAGKRRE 797 Query: 789 ADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVELTPQEDAVTALVAQGL 848 ADAV+ AR+ Y +LGA +YV RCDRELKAGGL+ R ELTPQE AVT LVA G Sbjct: 798 ADAVMQAAREGYFALGATSYVQRCDRELKAGGLNLKRSRFTLEELTPQERAVTELVAGGA 857 Query: 849 SNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAA 885 SN+E A EL++S KTVQYHLTRVYAKLG+RSR+ELAA Sbjct: 858 SNKEAAGELFLSVKTVQYHLTRVYAKLGIRSRSELAA 894 Score = 112 bits (281), Expect = 2e-22 Identities = 87/239 (36%), Positives = 121/239 (50%), Gaps = 18/239 (7%) Query: 2 LCGRDRELSELGEHVA-AAEHTARLVVLTGEPGIGKTALLRDLTQRHG---AWWALGASW 57 L GR REL+EL + A E+ +VV+ G PGIGKT L+ H A+ A+ A W Sbjct: 9 LVGRSRELAELESILREAGENAPVVVVVEGVPGIGKTTLVEHFLAAHPDLPAFSAVCAPW 68 Query: 58 ETDLPGGVLAQLMQDDVPD-DPLDGAAHLV---DHVRAAGVRLLLVDDAHHADVESLQAL 113 + P GV QL+ V DPLD A LV D + ++DDAH AD+ SLQAL Sbjct: 69 ASGHPFGVAEQLLGAAVTSKDPLDVARELVAAVDPPAGDAPFVFVLDDAHWADLASLQAL 128 Query: 114 STLVRHQRDLPVLVVLATQSVDALPIPLAADDVVE--------LTGLPVAAVVELAR-LR 164 ++ V H D P ++VL T S +P D+++ + L + LA L Sbjct: 129 TSAV-HLLDRPAMIVLVTNSEPPDGVPADVLDLLDRHRRHRLHVRPLDASDTRRLANTLA 187 Query: 165 GITIHPTLADRLTRHAGGNPRDVLALFDEVPASAWARLDSSLPAPRHVVERVATQLDSC 223 I + +A +L +H GGNPR + L EV SAW++ LP PR +V +QL +C Sbjct: 188 HIDLPAPVAHQLVQHTGGNPRHLTQLLQEVDPSAWSQWQPVLPVPRTFAAKVQSQLSAC 246 >tr|C3JDJ0|C3JDJ0_RHOER Tax_Id=596309 SubName: Full=Putative DNA-binding HTH domain containing protein;[Rhodococcus erythropolis SK121] Length = 900 Score = 447 bits (1150), Expect = e-123 Identities = 253/520 (48%), Positives = 309/520 (59%), Gaps = 3/520 (0%) Query: 369 ASRLTSDPLLRDERLTRSXXXXXXXXXXXXXXQLIPVVESLRETPLRNAVLAYLAILRGR 428 ASRLT+ ++RL R +P +ES+ PLR+AVL YLAI RGR Sbjct: 373 ASRLTTARTEHEDRLLRGVDALTGSGDIPRAMVFVPEIESISRGPLRDAVLGYLAIHRGR 432 Query: 429 ATEAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRGRGTELVRWADTALRLADRESP 488 TEA L RAWD + +R+P AA+IAQR VLHSL R GT LV W D A+ L P Sbjct: 433 PTEAADLLTRAWDSCSVDREPGIAAMIAQRMVLHSLARLDGTALVEWVDRAVELVGPYDP 492 Query: 489 TAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTLGRGWLQLIRDDVDGAR 548 AVES Y EL++R+ GAQAQR +GRGWL+L D + AR Sbjct: 493 AAVESEAIKGLGLGATGRTENALAAYAELSDRVRPGAQAQRFQMGRGWLELALDHPESAR 552 Query: 549 SNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAASSGITITTP 608 +LESA++T GS+RI+LWA AWLAR F G WD AL+TV I I P Sbjct: 553 RDLESAVSTEFSSGSARISLWAQAWLARTQFALGAWDEALSTVEGAGAEVDRFEIEIIRP 612 Query: 609 LLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQVAEAEADYPKXXXX 668 L+ W AQI ALRG+WE A V+ A YE+M +P +LARAQVAEA ADY + Sbjct: 613 LVHWSGAQIHALRGNWELARDHVRRAYAGIHAYEIMYVPALLARAQVAEAAADYAEVLVA 672 Query: 669 XXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEFLRPHEEVARERGHRSA 728 L EPG+WPW D+ ANALV+ G D+AD FL+PHE+ AR R HRSA Sbjct: 673 LAPLTSSKAQQW---LDEPGFWPWVDLYANALVMVGRADDADAFLQPHEQTARRREHRSA 729 Query: 729 MXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARVNFAYGQTLRRAGKRRD 788 F+ +L ++ LPL YDRAR+NFAYGQTLRRAGKR + Sbjct: 730 AARLGYVRGRIHGARGELDSARESFDAALLGIETLPLPYDRARINFAYGQTLRRAGKRAE 789 Query: 789 ADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVELTPQEDAVTALVAQGL 848 AD V+ AR+LY SLGA TYV RC+REL+AGGL+ R + +LTPQE AV LVA G Sbjct: 790 ADVVLRAARELYHSLGAATYVERCERELRAGGLNLSRTEKGITDLTPQERAVADLVAAGK 849 Query: 849 SNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAALRR 888 SN+E A EL++S KT+QYHLTR YAKLG+RSR+ELAAL R Sbjct: 850 SNKEAAGELFLSVKTIQYHLTRAYAKLGLRSRSELAALFR 889 Score = 123 bits (308), Expect = 1e-25 Identities = 81/240 (33%), Positives = 131/240 (54%), Gaps = 24/240 (10%) Query: 1 MLCGRDRELSELGEHVAAAEH-TARLVVLTGEPGIGKTALL---RDLTQRHGAWWALGAS 56 +L GR+REL+ LG +AAAE LV++ G+ G GK+ L+ +++ H A G Sbjct: 6 LLLGRERELAVLGRALAAAETGVPTLVLVEGDAGSGKSTLVDWFAEISSAHTLRRARGLE 65 Query: 57 WETDLPGGVLAQLMQDDVPD-DPLDGAAHLVDHVRAAGVRLLLVDDAHHADVESLQALST 115 WE++ GV+ QL++ V + DP+ A +VD A + L++VDDAHH+DV SLQA+++ Sbjct: 66 WESNTAFGVIEQLLERPVSNSDPVAVAHEIVD--AAEQLTLIVVDDAHHSDVSSLQAITS 123 Query: 116 LVRHQRDLPVLVVLATQSVDALPIPLAADDV-----------VELTGLPVAAVVELARLR 164 + R P+L VL + P +DV + ++ L A ++++AR+R Sbjct: 124 ALHRGRTAPLLFVLVAEET-----PFLREDVRQILDLHWSTRLHISPLDAAVIIDIARMR 178 Query: 165 -GITIHPTLADRLTRHAGGNPRDVLALFDEVPASAWARLDSSLPAPRHVVERVATQLDSC 223 GI + +A L GN D+++L DE+P + W + +LP PRH +A L +C Sbjct: 179 SGIDLSSGVALALQDFTAGNTLDIVSLLDELPPTYWTQWHRTLPVPRHRAVSIAAALATC 238 >tr|D2SB90|D2SB90_GEOOG Tax_Id=526225 SubName: Full=Transcriptional regulator, LuxR family;[Geodermatophilus obscurus] Length = 910 Score = 381 bits (978), Expect = e-103 Identities = 220/518 (42%), Positives = 280/518 (54%), Gaps = 5/518 (0%) Query: 368 DASRLTSDPLLRDERLTRSXXXXXXXXXXXXXXQLIPVVESLRETPLRNAVLAYLAILRG 427 DA R++ R+ERL + +P VE+L P R+AVLAY+A+ RG Sbjct: 389 DAGRISPSRAAREERLLEAVDALAGAGLLGQAVDALPEVEALPSGPRRDAVLAYVAVQRG 448 Query: 428 RATEAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRGRGTELVRWADTALRLADRES 487 R EA L AW ++R AA++ QR+VLH+L G ELVRWA A A+ + Sbjct: 449 RRAEAVSYLDTAWRHRGSDR--RAAAVVCQRHVLHALADWDGDELVRWAGRAGEYAEPGA 506 Query: 488 PTAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTLGRGWLQLIRDDVDGA 547 P AVES Y + G Q QR +G GWL L +D+ + A Sbjct: 507 PAAVESRAIVGLGLAACGAVDAAFTAYRQAVAESPSGPQHQRSRMGLGWLSLAQDEPEAA 566 Query: 548 RSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAASSGITITT 607 R LESA+ T GS RI+LWA+ WLAR FV GDW AL V L ++G+ + Sbjct: 567 RRELESAVPTVRQTGSKRISLWALVWLARTRFVLGDWPGALDAVNQAEVLLGTTGLDLLR 626 Query: 608 PLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQVAEAEADYPKXXX 667 PL+ W AQ+ ALRG+ E A + DY + +P +LARA VAEA +DY Sbjct: 627 PLVHWTGAQVRALRGEQEAAERHLLLGAAAEHDYTVRTVPALLARASVAEAASDYDAVVR 686 Query: 668 XXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEFLRPHEEVARERGHRS 727 L EPG+WPW DV ANALV+ G L EA+ FL PHE R RGHRS Sbjct: 687 HLTPLVLRTPRGG---LDEPGFWPWHDVYANALVVTGRLPEAEAFLAPHEATVRRRGHRS 743 Query: 728 AMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARVNFAYGQTLRRAGKRR 787 A F+++ A L GLP+ Y+RARV+FA+G TLRR G+RR Sbjct: 744 AGARLGYVRGRLLAARGDLLGAEEAFDQARAQLAGLPMPYERARVDFAHGVTLRRVGRRR 803 Query: 788 DADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVELTPQEDAVTALVAQG 847 DA A++ TAR + +LGA YV RCDRELK G + LT QE V LVA G Sbjct: 804 DAAALLTTARQSFAALGAQVYVERCDRELKTGRPAPRAAEPGTENLTEQERTVATLVATG 863 Query: 848 LSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAA 885 L+N+EVAA + +S KTVQ+HLTR+YAKLGVRSR+ELAA Sbjct: 864 LTNKEVAASMLLSVKTVQFHLTRIYAKLGVRSRSELAA 901 Score = 92.4 bits (228), Expect = 3e-16 Identities = 80/281 (28%), Positives = 119/281 (42%), Gaps = 37/281 (13%) Query: 25 LVVLTGEPGIGKTALLRDLTQRHG---AWWALGASWETDLPGGVLAQLMQDD-----VPD 76 + ++ G GIG+T +LR RH A G WE+ G + +L+ DD P Sbjct: 34 VALVEGPAGIGRTTVLRRFLHRHADLQVTAAAGLPWESSRNGALARRLLDDDPRHLPAPP 93 Query: 77 DPLDGA------AHLVDHVRAAGVRLLLVDDAHHADVESLQALSTLVRHQRDLPVLVVLA 130 D D A + G +++VDDAH AD SLQA+++ + RD+ VLV+LA Sbjct: 94 DAADAVDLGTALAGRWESRAGEGPLVVVVDDAHCADPVSLQAITSGLARLRDVAVLVLLA 153 Query: 131 TQSV-DALPIPLAADDVVELTGLPVAAV--------VELARLRGITIHPTLADRLTRHAG 181 + A P A + + L +PV + AR+ + + ++A RL H Sbjct: 154 RATGWPAAGEPRAVEVLDRLPAVPVPVPPLGPAETRLLAARIAAVDLPLSVARRLCTHTA 213 Query: 182 GNPRDVLALFDEVPASAWARLDSSLPAPRHVVERVATQLDSCGPXXXXXXXXXXXXXXXX 241 G PR +L L +E P + W+ + LP P V +RV LD C Sbjct: 214 GIPRHLLELLNETPPARWSDWQTRLPVPSRVQQRVRRTLDGC--------------PRPA 259 Query: 242 XXXXXXXXXXXXXXXXXXXXGLSGPSEPLAALDEAVDAGLV 282 L+ S+P+ ALDEA AGL+ Sbjct: 260 RALVEAAAVLGPTPVLADAAALAEVSDPIGALDEACAAGLL 300 >tr|A4T5W1|A4T5W1_MYCGI Tax_Id=350054 SubName: Full=Response regulator receiver protein;[Mycobacterium gilvum] Length = 189 Score = 251 bits (642), Expect = 3e-64 Identities = 129/189 (68%), Positives = 150/189 (79%) Query: 700 LVIDGALDEADEFLRPHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLAL 759 +V+ G L A++FLRPH + A+ RGHRSA FE+SLAL Sbjct: 1 MVLTGDLAAAEDFLRPHAQRAKSRGHRSAQARLGWVRGRLLGARGDIASAREAFEQSLAL 60 Query: 760 LDGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAG 819 LDGLPLRY+ ARVNFAYGQTLRRAGKRR+AD VI+ AR+LY++LGA TYVARCDRELKAG Sbjct: 61 LDGLPLRYETARVNFAYGQTLRRAGKRREADTVISAARELYVALGADTYVARCDRELKAG 120 Query: 820 GLHQLRGSRDSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRS 879 GLHQ R SR +VELTPQE+AV+ LV++GLSNREVAAELYVSPKTVQYHLTR+YAKLG+RS Sbjct: 121 GLHQSRESRHTVELTPQEEAVSTLVSRGLSNREVAAELYVSPKTVQYHLTRIYAKLGIRS 180 Query: 880 RAELAALRR 888 R+ELAALRR Sbjct: 181 RSELAALRR 189 >tr|Q8NN05|Q8NN05_CORGL Tax_Id=1718 SubName: Full=Bacterial regulatory protein, LuxR family; SubName: Full=DNA-binding HTH domains;[Corynebacterium glutamicum] Length = 895 Score = 229 bits (584), Expect = 1e-57 Identities = 162/472 (34%), Positives = 222/472 (47%), Gaps = 15/472 (3%) Query: 415 RNAVLAYLAILRGRATEAEVRLRRAWDIVNAER--DPETAALIAQRYVLHSLVRGRGTEL 472 ++++L YLAI GR EA L RA + + A+ DP +AQR VL +LV EL Sbjct: 427 QDSMLGYLAIHEGRRLEARNLLHRASEELLAQHPIDPIHGPRMAQRKVLLNLVDWNPEEL 486 Query: 473 VRWADTALRLADRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTL 532 + WAD A+ + ++ VE+ E H AQR + Sbjct: 487 LVWADRAVAWTEEDAGEKVEAQAISLIGQSILDGCLPEDKPIP--GETTLH---AQRRHM 541 Query: 533 GRGWLQLIRDDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVV 592 GWL ++ DD AR LE ++ GS RI+LW WLAR+ + G+W++A TV Sbjct: 542 AMGWLSMVHDDPVTARQKLE---RRTSINGSERISLWQDGWLARSLLLLGEWESAARTVE 598 Query: 593 SGRDLAASSGITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILAR 652 G A GI PLL W A I+ RG+ + A + + + +P+ + R Sbjct: 599 IGLARAEQFGIRFLEPLLLWSGATIATARGNSDLARNYMSRLSTDQDSFIVQSMPSAMCR 658 Query: 653 AQVAEAEADYPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEF 712 V + P + PG+WPW DV A L+ G + A E Sbjct: 659 MWVHRHRNEIPGAIVAGEQLEKIAAHKH---VNAPGFWPWQDVHATHLIRIGETERAQEL 715 Query: 713 LRPHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARV 772 + E R SA F+++L +LD L L Y RAR+ Sbjct: 716 VNSTLEELRGSDIMSAHAKIAVPDAMLMIHHGDVKKGFKRFDDALDMLDPLTLPYYRARI 775 Query: 773 NFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVE 832 F YGQ LRR G+RR AD A A L+ +GA V +RE + GGL Q S + Sbjct: 776 CFEYGQALRRQGQRRRADEQFARAASLFQDMGADAMVTLANRERRVGGLGQ--RSEQAGG 833 Query: 833 LTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELA 884 LTPQE + LV+ G +NREVA EL++SPKTV+YHLTRVY KLG+R+R ELA Sbjct: 834 LTPQEYEIARLVSSGHANREVAQELFLSPKTVEYHLTRVYKKLGIRNRMELA 885 Score = 46.2 bits (108), Expect = 0.022 Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 16/199 (8%) Query: 24 RLVVLTGEPGIGKTALLRDLTQRHGAWWALGA---SWETDLPGGVLAQLMQDDVPDDPLD 80 +L ++G+PG GKT L W + A SW + P +L + + + Sbjct: 39 KLFHISGQPGAGKTEFGMQLIDELQGWTVVRATSLSWLKNSPRNLLGHIAHK-LGAHSAN 97 Query: 81 GAAHLVDHVRAAGVRLLLVDDAHHADVESLQAL---STLVRHQRDLPVLVVLATQSV--- 134 ++D + A+ V ++VDD H ADVES+Q L S + R +++ L +++ Sbjct: 98 SIRGVIDRLDASTV--VIVDDVHWADVESMQKLIEYSMRMVSGRFALIMIGLDEENLVFH 155 Query: 135 -DALPIPLAADDVVELTGLPVAAVVELA--RLRGITIHPTLADRLTRHAGGNPRDVLALF 191 + + +P AD L + + + +LA +RG I T A + R GG V + Sbjct: 156 DEVVSLPSIADSTYVLPPMSIEEIRQLALTDVRG-RISTTTATDIQRITGGIYGRVKEVL 214 Query: 192 DEVPASAWARLDSSLPAPR 210 W + ++P P+ Sbjct: 215 HSESPDHWRMPNPNIPIPQ 233 >tr|A4QGC8|A4QGC8_CORGB Tax_Id=340322 SubName: Full=Putative uncharacterized protein;[Corynebacterium glutamicum] Length = 895 Score = 229 bits (584), Expect = 1e-57 Identities = 161/472 (34%), Positives = 222/472 (47%), Gaps = 15/472 (3%) Query: 415 RNAVLAYLAILRGRATEAEVRLRRAWDIVNAER--DPETAALIAQRYVLHSLVRGRGTEL 472 ++++L YLAI GR EA L RA + + A+ DP +AQR VL +L+ EL Sbjct: 427 QDSMLGYLAIHEGRRLEARNLLHRASEELLAQHPIDPIHGPRMAQRKVLLNLLDWNPEEL 486 Query: 473 VRWADTALRLADRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTL 532 + WAD A+ D ++ VE+ E H AQR + Sbjct: 487 LVWADRAVAWTDEDAGEKVEAQAISLIGQSILDGCLPEDKPIP--GETTLH---AQRRHM 541 Query: 533 GRGWLQLIRDDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVV 592 GWL ++ DD AR LE ++ GS RI+LW WLAR+ + G+W++A TV Sbjct: 542 AMGWLSMVHDDPVTARQKLE---RRTSINGSERISLWQDGWLARSLLLIGEWESAARTVE 598 Query: 593 SGRDLAASSGITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILAR 652 G A GI PLL W A I+ RG+ + A + + + +P+ + R Sbjct: 599 IGLARAEQFGIRFLEPLLLWSGATIATARGNSDLARNYMSRLSTDQDSFIVQSMPSAMCR 658 Query: 653 AQVAEAEADYPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEF 712 V + P + PG+WPW D+ A L+ G + A E Sbjct: 659 MWVHRHRNEIPGAIVAGEQLEKIAAHKH---VNAPGFWPWQDIHATHLIRIGETERAQEL 715 Query: 713 LRPHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARV 772 + E R SA F+++L +LD L L Y RAR+ Sbjct: 716 VNSTLEELRGSDIMSAHAKIAVPDAMLMIHHGDVKKGFKRFDDALDMLDPLTLPYYRARI 775 Query: 773 NFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVE 832 F YGQ LRR G+RR AD A A L+ +GA V +RE + GGL Q S + Sbjct: 776 CFEYGQALRRQGQRRRADEQFARAASLFQDMGADAMVTLANRERRVGGLGQ--RSEQAGG 833 Query: 833 LTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELA 884 LTPQE + LV+ G +NREVA EL++SPKTV+YHLTRVY KLG+R+R ELA Sbjct: 834 LTPQEYEIARLVSSGHANREVAQELFLSPKTVEYHLTRVYKKLGIRNRMELA 885 Score = 46.2 bits (108), Expect = 0.022 Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 16/199 (8%) Query: 24 RLVVLTGEPGIGKTALLRDLTQRHGAWWALGA---SWETDLPGGVLAQLMQDDVPDDPLD 80 +L ++G+PG GKT L W + A SW + P +L + + + Sbjct: 39 KLFHISGQPGAGKTEFGMQLIDELQGWTVVRATSLSWLKNSPRNLLGHIAHK-LGAHSAN 97 Query: 81 GAAHLVDHVRAAGVRLLLVDDAHHADVESLQAL---STLVRHQRDLPVLVVLATQSV--- 134 ++D + A+ V ++VDD H ADVES+Q L S + R +++ L +++ Sbjct: 98 SIRGVIDRLDASTV--VIVDDVHWADVESMQKLIEYSMRMVSGRFALIMIGLDEENLVFH 155 Query: 135 -DALPIPLAADDVVELTGLPVAAVVELA--RLRGITIHPTLADRLTRHAGGNPRDVLALF 191 + + +P AD L + + + +LA +RG I T A + R GG V + Sbjct: 156 DEVVSLPSIADSTYVLPPMSIEEIRQLALTDVRG-RISTTTATDIQRITGGIYGRVKEVL 214 Query: 192 DEVPASAWARLDSSLPAPR 210 W + ++P P+ Sbjct: 215 HSESPDHWRMPNPNIPIPQ 233 >tr|Q8FN39|Q8FN39_COREF Tax_Id=152794 SubName: Full=Putative transcription regulator;[Corynebacterium efficiens] Length = 895 Score = 227 bits (578), Expect = 7e-57 Identities = 157/471 (33%), Positives = 223/471 (47%), Gaps = 15/471 (3%) Query: 415 RNAVLAYLAILRGRATEAEVRLRRAWDIVNAER--DPETAALIAQRYVLHSLVRGRGTEL 472 ++++L YLAI GR +EA L R + A+ DP +A R VL +L+ EL Sbjct: 427 QDSMLGYLAIHEGRQSEARSLLDRTAKAILAQDPIDPIHGPRLAARKVLLNLLDWDPEEL 486 Query: 473 VRWADTALRLADRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTL 532 + WA+ A+ +D ++ VE+ E H AQR + Sbjct: 487 LLWANRAIDWSDEDAGEKVEAQAISLIGQSIIDGKLPEDAPIP--GETTLH---AQRRHM 541 Query: 533 GRGWLQLIRDDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVV 592 GWL LI D+ AR LE + GS RI+LW AWLARA + G+W++AL TV Sbjct: 542 AMGWLNLIHDNPITARQKLE---RRTFISGSERISLWQDAWLARAQLILGEWESALRTVE 598 Query: 593 SGRDLAASSGITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILAR 652 G A GI PLL W A ++ +G+ + A + + + IP+ + R Sbjct: 599 VGLARAEQFGIRFLEPLLLWTGATVATAKGNNDLARHYLSRLSSDQDSFVIQSIPSAMCR 658 Query: 653 AQVAEAEADYPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEF 712 V + +++PG+WPW D+ A L+ G ++ A E Sbjct: 659 MWVYSRRNEMAAARIAGGTMEKIAANHN---ISQPGFWPWEDIHATNLIRMGNIERATEV 715 Query: 713 LRPHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARV 772 + + R S FEE+L +LDGL L + R+R+ Sbjct: 716 VESTIDSYRTTDIMSVKAKIAVPEAMLMIHHGDVSRGLARFEEALDMLDGLTLPFYRSRI 775 Query: 773 NFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVE 832 F YGQ LRR G+RR AD + A A ++ +GA+ V+ +RE + GGL G Sbjct: 776 LFEYGQALRRQGQRRRADEIFARASSMFQEMGANALVSMANRERRVGGLGPRSGKTGG-- 833 Query: 833 LTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAEL 883 LTPQE + LVA G SNREVA EL++SPKTV+YHLTRVY KL +R+R EL Sbjct: 834 LTPQEYEIALLVADGNSNREVAHELFLSPKTVEYHLTRVYRKLQIRTRMEL 884 Score = 41.2 bits (95), Expect = 0.70 Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 14/197 (7%) Query: 24 RLVVLTGEPGIGKTALLRDLTQRHGAWWAL---GASWETDLPGGVLAQLMQDDVPDDPLD 80 RL + G G GK+ LT+ W + SW D +L + + + Sbjct: 39 RLFYIGGRHGAGKSEFASSLTELLPGWSVVKVSALSWLQDSQRALLTHIGHK-LGASSSN 97 Query: 81 GAAHLVDHVRAAGVRLLLVDDAHHADVESLQALSTLVRHQ---RDLPVLVVLATQSVDAL 137 ++D A+ V ++VDD H AD ESL L R R + +L+ L Q+ + Sbjct: 98 AIRGVIDRRGASTV--VIVDDVHWADQESLHKLIEFSRRMVSGRFVLILIGLEGQTPNLD 155 Query: 138 PIPLAADDVVELT-GLPVAAVVELARLRGITIH----PTLADRLTRHAGGNPRDVLALFD 192 L D+ ++T LP ++ E+ ++ T+ + A + R GG VL + Sbjct: 156 GSSLNFQDLADVTYVLPPMSIEEIRQVALTTVRGRITASTATDIQRITGGVFGHVLEVLH 215 Query: 193 EVPASAWARLDSSLPAP 209 V W + + ++P P Sbjct: 216 AVSPDHWKQTNPNVPIP 232 >tr|C8NQS2|C8NQS2_COREF Tax_Id=196164 SubName: Full=LuxR family bacterial regulatory protein;[Corynebacterium efficiens YS-314] Length = 895 Score = 227 bits (578), Expect = 7e-57 Identities = 157/471 (33%), Positives = 223/471 (47%), Gaps = 15/471 (3%) Query: 415 RNAVLAYLAILRGRATEAEVRLRRAWDIVNAER--DPETAALIAQRYVLHSLVRGRGTEL 472 ++++L YLAI GR +EA L R + A+ DP +A R VL +L+ EL Sbjct: 427 QDSMLGYLAIHEGRQSEARSLLDRTAKAILAQDPIDPIHGPRLAARKVLLNLLDWDPEEL 486 Query: 473 VRWADTALRLADRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTL 532 + WA+ A+ +D ++ VE+ E H AQR + Sbjct: 487 LLWANRAIDWSDEDAGEKVEAQAISLIGQSIIDGKLPEDAPIP--GETTLH---AQRRHM 541 Query: 533 GRGWLQLIRDDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVV 592 GWL LI D+ AR LE + GS RI+LW AWLARA + G+W++AL TV Sbjct: 542 AMGWLNLIHDNPITARQKLE---RRTFISGSERISLWQDAWLARAQLILGEWESALRTVE 598 Query: 593 SGRDLAASSGITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILAR 652 G A GI PLL W A ++ +G+ + A + + + IP+ + R Sbjct: 599 VGLARAEQFGIRFLEPLLLWTGATVATAKGNNDLARHYLSRLSSDQDSFVIQSIPSAMCR 658 Query: 653 AQVAEAEADYPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEF 712 V + +++PG+WPW D+ A L+ G ++ A E Sbjct: 659 MWVYSRRNEMAAARIAGGTMEKIAANHN---ISQPGFWPWEDIHATNLIRMGNIERATEV 715 Query: 713 LRPHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARV 772 + + R S FEE+L +LDGL L + R+R+ Sbjct: 716 VESTIDSYRTTDIMSVKAKIAVPEAMLMIHHGDVSRGLARFEEALDMLDGLTLPFYRSRI 775 Query: 773 NFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVE 832 F YGQ LRR G+RR AD + A A ++ +GA+ V+ +RE + GGL G Sbjct: 776 LFEYGQALRRQGQRRRADEIFARASSMFQEMGANALVSMANRERRVGGLGPRSGKTGG-- 833 Query: 833 LTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAEL 883 LTPQE + LVA G SNREVA EL++SPKTV+YHLTRVY KL +R+R EL Sbjct: 834 LTPQEYEIALLVADGNSNREVAHELFLSPKTVEYHLTRVYRKLQIRTRMEL 884 Score = 41.2 bits (95), Expect = 0.70 Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 14/197 (7%) Query: 24 RLVVLTGEPGIGKTALLRDLTQRHGAWWAL---GASWETDLPGGVLAQLMQDDVPDDPLD 80 RL + G G GK+ LT+ W + SW D +L + + + Sbjct: 39 RLFYIGGRHGAGKSEFASSLTELLPGWSVVKVSALSWLQDSQRALLTHIGHK-LGASSSN 97 Query: 81 GAAHLVDHVRAAGVRLLLVDDAHHADVESLQALSTLVRHQ---RDLPVLVVLATQSVDAL 137 ++D A+ V ++VDD H AD ESL L R R + +L+ L Q+ + Sbjct: 98 AIRGVIDRRGASTV--VIVDDVHWADQESLHKLIEFSRRMVSGRFVLILIGLEGQTPNLD 155 Query: 138 PIPLAADDVVELT-GLPVAAVVELARLRGITIH----PTLADRLTRHAGGNPRDVLALFD 192 L D+ ++T LP ++ E+ ++ T+ + A + R GG VL + Sbjct: 156 GSSLNFQDLADVTYVLPPMSIEEIRQVALTTVRGRITASTATDIQRITGGVFGHVLEVLH 215 Query: 193 EVPASAWARLDSSLPAP 209 V W + + ++P P Sbjct: 216 AVSPDHWKQTNPNVPIP 232 >tr|D5NWS5|D5NWS5_CORAM Tax_Id=649754 SubName: Full=ATP-dependent transcriptional regulator, LuxR family;[Corynebacterium ammoniagenes DSM 20306] Length = 915 Score = 223 bits (568), Expect = 1e-55 Identities = 155/472 (32%), Positives = 226/472 (47%), Gaps = 17/472 (3%) Query: 415 RNAVLAYLAILRGRATEAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRGRGTELVR 474 R+++L YLAI +GR EA RL A +++ +T A +A L + ++ Sbjct: 452 RDSLLGYLAIHQGRRNEALSRLDNA--LLDHSAPNQTRAQLASYKALAEIANWNLPGVIE 509 Query: 475 WADTALRLADRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHG-AQAQRVTLG 533 A+ A + S A+ + Y E+ + AQR + Sbjct: 510 AAEDAAKWGGPTSEPALSAGYIATVADSAINGT------YTEIHLQPGESPVLAQRRHMV 563 Query: 534 RGWLQLIRDDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVS 593 GW++L DD AR L+ GS+RI LW +AWLARA F+ G+WD A+ATV Sbjct: 564 SGWIKLANDDPISARQELQQLPRDE---GSTRIDLWQLAWLARAEFLLGEWDDAIATVEK 620 Query: 594 GRDLAASSGITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARA 653 G A GI + PLL W A IS LRG + A + + R+P + R Sbjct: 621 GLFQADYYGIDLLNPLLLWTGAIISQLRGSYSMAANYRNRLLIGNDAFVIQRVPAAITRI 680 Query: 654 QVAEAEADYPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEFL 713 E + T +++PGYWPW D+ N L+ LDEADE L Sbjct: 681 VTGLRE---NQMLEATRAADQLIAIDKETNISQPGYWPWRDLAVNVLLSTKRLDEADELL 737 Query: 714 RPHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARVN 773 E+ A+ + S +EE++ ++ +R + R Sbjct: 738 SEAEDDAKRVNNFSLYARLVPERAHQALVLGETERGVKLYEEAIEMMSSTHMRPYQGRTL 797 Query: 774 FAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVEL 833 FA+GQ LRR G+R+ AD +A A ++Y S+GAH YV + +RE +AGGL + S S L Sbjct: 798 FAFGQALRRLGRRKHADGYLARAAEVYQSMGAHAYVEKINRERRAGGLGPRQASASS--L 855 Query: 834 TPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAA 885 T QE V A GL+N+E+AA+L++SPKTV++HLTR+Y KL +R+R EL A Sbjct: 856 TTQELEVAQNAASGLTNKEIAAQLFLSPKTVEFHLTRIYRKLQIRTRTELPA 907 Score = 47.0 bits (110), Expect = 0.013 Identities = 53/238 (22%), Positives = 97/238 (40%), Gaps = 31/238 (13%) Query: 12 LGEHVAAAEHTARLVVLTGEPGIGKTALLRDLTQRHGAWWALGASWETDLPGGVLAQLMQ 71 + E + A +++ + G+ IGK++L R + + W A S + + L + Sbjct: 36 MAEINSLAPGKGQILAIHGDRSIGKSSLARSILRNLSGWSAYSMSATSGMDTADLINRIN 95 Query: 72 ---------------DDVPDDP---------LDGAAHLVDHVRAAGVRLLLVDDAHHADV 107 + P P LD H+VD ++ L+ +DDAH + Sbjct: 96 LVLTESESENAHGEVNSAPQAPQAAEDINSALDSMVHIVDVPFSS--TLIHIDDAHLLEE 153 Query: 108 ESLQALSTLVRHQRDLPVLVVLATQSVDALPIPLAADDVVELTGLPVAAVVELARLR-GI 166 ++QAL + +D + L T + +A P A+ ++T + + A G Sbjct: 154 PTVQALGAALSTLKD-GRFIALMTGASNA-PYLAYAESTAQITPMTAEEIQTFALSDIGA 211 Query: 167 TIHPTLADRLTRHAGGNPRDVLALFDEVPASAWARLDSSLPAPRHVVERVATQLDSCG 224 + LA+RL GG V L +PA AW + + ++ P+ ++R + SCG Sbjct: 212 RVSVDLAERLQSMTGGYLGKVHELLTALPADAWHKRNVTVKVPQRWIQR--WEEKSCG 267 >tr|C8XGA7|C8XGA7_NAKMY Tax_Id=479431 SubName: Full=Transcriptional regulator, LuxR family;[Nakamurella multipartita] Length = 927 Score = 207 bits (528), Expect = 4e-51 Identities = 158/519 (30%), Positives = 226/519 (43%), Gaps = 7/519 (1%) Query: 369 ASRLTSDPLLRDERLTRSXXXXXXXXXXXXXXQLIPVVESLRETPLRNAVLAYLAILRGR 428 +SRL+ P R RL R+ L V S PLR++ L YLA Sbjct: 391 SSRLSPQPADRQRRLLRAVNFLVIAGAASQAAHLAEEVASFPPGPLRDSTLGYLATATRG 450 Query: 429 ATEAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRGRGTELVRWADTALRLADRESP 488 EA L AW V+ D E AA IA + +H R G W+ A+ L + + P Sbjct: 451 PAEAGRLLSSAWQQVDPAADRELAATIALQSAIHFHGRLDGPATATWSAKAIDLTEPDDP 510 Query: 489 TAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTLG--RGWLQLIRDDVDG 546 + +++ I A+RV G GWL+LI DD+ Sbjct: 511 MRFVAETHRAFGLGYSGRFGEALPVVEDVTGTIDGSPDARRVQHGAAHGWLRLINDDLVT 570 Query: 547 ARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAASSGITIT 606 ARS L + A + ++ A LARA +++G W AL + + L S Sbjct: 571 ARSMLHAVAVDAARLVTLNTAAFSYAHLARAEYLAGAWHEALVHIENAIALTTESESDYL 630 Query: 607 TPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQVAEAEADYPKXX 666 L+ +A I A RG+W A A YE LA AQ+A A D P+ Sbjct: 631 RSLVFGMAVVIPAARGEWAAARTYADLATAEASSYERAVAAAALAGAQLAAAR-DEPERV 689 Query: 667 XXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEFLRPHEEVARERGHR 726 G + EPG WPWP++ A+AL G EAD FL PHE +A R Sbjct: 690 LDLLDPIRAMHPRQG--IDEPGIWPWPELYADALTALGRTAEADAFLIPHELLAHRRRRA 747 Query: 727 SAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARVNFAYGQTLRRAGKR 786 SA+ F+ + + L + Y++A + A+G+ L R +R Sbjct: 748 SAIARLARARGSLESRAGRDSVADQAFQLAAGQIQRLAMPYEQALIELAHGRHLVRTNRR 807 Query: 787 RDADAVIATARDLYLSLGAHTYVARCDRELKAGGL--HQLRGSRDSVELTPQEDAVTALV 844 + A ++ A D + +LGA ++A+ EL+A G+ R + LT QE V L+ Sbjct: 808 KAAAKLLTAAGDRFTALGAAPFLAQTVAELRACGITVEGTTRQRLRIGLTSQELVVARLI 867 Query: 845 AQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAEL 883 A G +NRE AA+L VS KT++YHL+ VYAKLG +R +L Sbjct: 868 ADGKTNREAAADLVVSVKTIEYHLSNVYAKLGGITRRQL 906 Score = 65.1 bits (157), Expect = 5e-08 Identities = 75/251 (29%), Positives = 106/251 (42%), Gaps = 32/251 (12%) Query: 4 GRDRELSELGEHVAAAEHTA-RLVVLTGEPGIGKTALLRDLTQRHGAWWAL---GASWET 59 GRD EL L E + A A +V+L GEPGIGKT L+ +RH +L G E Sbjct: 7 GRDTELDTLDELLVQARAGAPHVVLLVGEPGIGKTTLIDGFLRRHRDVTSLRAGGDDSEM 66 Query: 60 DLPGGVLAQLMQD----------------DVPDDPLDGA--AHLVDHVRAAGVRLLLVDD 101 G++ QL VPD G+ L+ + AG +L++DD Sbjct: 67 LYSYGIVRQLAASAGPAGLELAGQLAQVAPVPDPIAIGSQLLALLGERQQAGPAVLVIDD 126 Query: 102 AHHADVESLQALSTLVRHQRDLPVLVVLAT--QSVDALPIPL------AADDVVELTGLP 153 AD S+++++ +R + +LV+LA +S++ LP L + L GL Sbjct: 127 IQWADDPSVKSITFGLRRLQADQLLVILAVREESINELPDGLLRIVRGELATEIRLGGLA 186 Query: 154 VAAVVELARLRGITIHPT-LADRLTRHAGGNPRDVLALFDEVPASAWARLDSSLPAPRHV 212 + ELA GI P A RL G+P L E P +W D LP PR Sbjct: 187 EHELAELAGKLGIGSFPARAARRLRSGTDGHPLFARELLREFPPESWGAQD-VLPPPRSF 245 Query: 213 VERVATQLDSC 223 V + C Sbjct: 246 RHLVRQRYRRC 256 >tr|C8XHS3|C8XHS3_NAKMY Tax_Id=479431 SubName: Full=Transcriptional regulator, LuxR family;[Nakamurella multipartita] Length = 959 Score = 202 bits (513), Expect = 2e-49 Identities = 167/551 (30%), Positives = 229/551 (41%), Gaps = 46/551 (8%) Query: 369 ASRLTSDPLLRDERLTRSXXXXXXXXXXXXXXQLIPVVESLRETPLRNAVLAYLAILRGR 428 ASRL+ DP R+ + L+ V + PLR+ VL LA+ Sbjct: 409 ASRLSRDPDRARRRVLWALIWTLMRGDAAAASDLVDEVTAYPPEPLRDLVLGSLAMAAEE 468 Query: 429 ATEAEVRLRRAW---------DIVNAERDPETAALIAQRYVLHSLVRGRGTELVRWADTA 479 A L RAW D E D A + Q + + GT V W + A Sbjct: 469 PERAGQLLDRAWAACERACAADGSALEGDDVAAVALMQAIAHYGRLDAAGT--VAWCERA 526 Query: 480 LR-LADRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGA-------QAQRVT 531 L + DRES Y + HG QAQ V Sbjct: 527 LAAVGDRESGPDHPDRPDESDRMGPQTSIHVAAVTY------LAHGLGYLGRLDQAQAVV 580 Query: 532 LGR-----------------GWLQLIRDDVDGARSNLESAIATANLGGSSRITLWAMAWL 574 + G L L+ D+ D A + L S A+A+ G ++ A+L Sbjct: 581 AAQRQPDESPYRWLNPRSALGVLHLVEDEFDSAAAVLGSVAASASRIGVLNTAAFSYAYL 640 Query: 575 ARAHFVSGDWDAALATVVSGRDLAASSGITITTPLLEWIAAQISALRGDWETAHAAVQAA 634 ARA +++GDWD A + S + + IA + A RGDW A ++ Sbjct: 641 ARAQWMAGDWDDAQVNADRAVSINLESDLGFLRSAVVGIAVLVPAARGDWAAAEQHLRLL 700 Query: 635 DRVTQDYEMMRIPTILARAQVAEAEADYPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPD 694 R YE + LARA+V EA + + EPG+WPWPD Sbjct: 701 PRSQVHYERSIVALGLARARVGEARG---RPRDVLAALDRVHQFPIRDAVDEPGFWPWPD 757 Query: 695 VLANALVIDGALDEADEFLRPHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFE 754 + A+ALV G EAD+FL HE+ A++RG +A+ F+ Sbjct: 758 LYADALVAVGRAAEADQFLLSHEQRAQQRGRPTAIARLARSRGRVEAALDRPEAAQAAFD 817 Query: 755 ESLALLDGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDR 814 +L ++ + ++RAR+ A G+ R AG RR A ++ AR +L LGA Y RCD Sbjct: 818 RALTVVGTVRAPFERARIELAAGEVARAAGNRRRAVELLLAARAGFLGLGATPYAQRCDA 877 Query: 815 ELKAGGLHQL-RGSRDSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYA 873 EL A GL R LT QE V L A GLSNR++A EL VS KTV+YHL +A Sbjct: 878 ELAAAGLATADRPGGPRFGLTAQELVVARLAADGLSNRQIAGELVVSIKTVEYHLRNAFA 937 Query: 874 KLGVRSRAELA 884 KLG+ SR +LA Sbjct: 938 KLGITSRRQLA 948 Score = 73.2 bits (178), Expect = 2e-10 Identities = 89/273 (32%), Positives = 117/273 (42%), Gaps = 53/273 (19%) Query: 4 GRDRELSELGEHVAAAEHTA---RLVVLTGEPGIGKTALLRDLTQRHGA------WWALG 54 GR EL L H A+ A R+V++ G PGIGKTALL L + A A G Sbjct: 6 GRQTELGVL--HACLADARAGRPRVVLIEGAPGIGKTALLDRLAEDAAAADDVVVLRASG 63 Query: 55 ASWETDLPGGVLAQLMQD---------DVPD-------DPLDGA--AHLVDHV------- 89 E L GVL QL + D+PD DP D A A L D + Sbjct: 64 DLHEDLLAYGVLGQLARSAGPATPGLPDLPDRSGPAVADPADPADSAPLADPITVGAQWL 123 Query: 90 -----RAAGVRLLLVDDAHHADVESLQALSTLVRHQRDLPVLVVLATQSVDALPIPLA-- 142 A V ++++DDA AD SL AL +R VL V AT+ A +P + Sbjct: 124 HRLDAMAGSVVVIIIDDAMWADRPSLLALVFALRRLVADRVLAVFATRERAAGDLPESLT 183 Query: 143 ------ADDVVELTGLPVAAVVELARLRGIT-IHPTLADRLTRHAGGNPRDVLALFDEVP 195 V+ L+GL + +LA G++ + T+A RL GNP AL +E P Sbjct: 184 RLITGHLGAVLRLSGLDERELRDLATALGVSGVGSTVARRLREGTDGNPLHARALLEEFP 243 Query: 196 ASAWA--RLDSS-LPAPRHVVERVATQLDSCGP 225 + W R D S LPAPR V ++ P Sbjct: 244 VTVWPVNRQDESLLPAPRPFRHLVRSRYQHSAP 276 >tr|A8LB78|A8LB78_FRASN Tax_Id=298653 SubName: Full=Transcriptional regulator, LuxR family;[Frankia sp.] Length = 1000 Score = 169 bits (429), Expect = 1e-39 Identities = 156/495 (31%), Positives = 205/495 (41%), Gaps = 29/495 (5%) Query: 406 VESLRETPLRNAVLAYLAILRGRATEAEVRLRRAWDIVN----AERDPETAALIAQRYVL 461 V R T R+ +L A RG A EAE RLR AW + A+ DP A +A Sbjct: 495 VRGFRPTAWRDYLLGRFAFQRGDADEAETRLRSAWKRCDPDGGADADPLLGARVAGWLAA 554 Query: 462 HSLVRGRGTELVRWADTALRLADRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAERI 521 + G E WA AL L SP D +A+ + Sbjct: 555 LYQTKLLGAESAEWAGRALAL----SPGHAAFDLIGQIRMGGLAMSGHLDAVLDSVAD-L 609 Query: 522 THGAQAQRVTL----GRGWLQLIRDDVDGARSNLESAIATANLGGSSRITLWAMAW---L 574 A A L GRG L + DD GAR +L +A G R L+ ++ L Sbjct: 610 PDPAVASMTDLDMLAGRGSLHALVDDFAGARRDLGGVLAA----GRDRSLLFRVSVTTAL 665 Query: 575 ARAHFVSGDWDAALATVVSGRDLAASSGITITTPLLEWIAAQISALRGDWETAHAAVQAA 634 A+A + +G WD A L A S P + + A RG W A V Sbjct: 666 AQAEYRAGLWDDAAIHCDHALSLMADSDDGALVPYCHQVGVLVPAARGHWVEAEEHV--- 722 Query: 635 DRVTQDYEMMRIPTILARAQVAEAEADYPKXXXXXXXXXXXXXXXXGTVL--TEPGYWPW 692 R TQ + P ++A A +A A + G + EPG W Sbjct: 723 -RTTQAFAESGFPYLVASAAIATAHLARARGLPAEIVAALEPPVRSGLLDLDAEPGVSGW 781 Query: 693 PDVLANALVIDGALDEADEFLRPHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXX 752 D L +ALV G L A+E L E AR RG R+AM Sbjct: 782 QDTLVDALVEVGDLGRAEEVLIRFEAAARLRGRRAAMAAAARSRGNLEARRDNVSAADRA 841 Query: 753 FEESLALLDGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARC 812 F LA + + L ++RA ++ YG LRRAG+ DA + A D L A Y+ RC Sbjct: 842 FRAGLAEWEHVDLPFERALLHHLYGAFLRRAGRPADAIRQLRAAHDTLSLLDARPYLDRC 901 Query: 813 DRELKAGGLHQLRGSR---DSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLT 869 + EL AGG G R D+ LT E AV LVA GL+NR+VA EL +S KTV++HL Sbjct: 902 ESELVAGGWAPRDGCRREPDASRLTTPELAVAKLVAAGLTNRQVARELVLSEKTVEHHLR 961 Query: 870 RVYAKLGVRSRAELA 884 V+ KL V +R +L+ Sbjct: 962 AVFGKLDVTARTQLS 976 Score = 84.7 bits (208), Expect = 6e-14 Identities = 99/321 (30%), Positives = 130/321 (40%), Gaps = 56/321 (17%) Query: 4 GRDRELSELGEHVA-AAEHTARLVVLTGEPGIGKTALLRDLTQRHGAW---WALGASWET 59 GR L +L VA R+ +L G GIGKTAL R L A WA G ET Sbjct: 64 GRPEALLQLRRAVADVLGGRPRVALLEGPAGIGKTALARHLLGEADAGCVLWASGEEDET 123 Query: 60 DLPGGVLAQLMQD-------DVPD-------------------DPLDGAAHLVD---HVR 90 L GVL QL + D P DPL A LV+ ++ Sbjct: 124 GLSFGVLDQLTAEAARVLGADQPSPSGPGELTGTAGSVRGPSPDPLVAGAALVELLGELQ 183 Query: 91 AAGVRLLLVDDAHHADVESLQALSTLVRHQR-DLPVLVVLATQSVDA-LPIPLAADDVVE 148 +G +L+VDDAH AD SLQAL+ +R R D + +V+ VDA LP L + E Sbjct: 184 RSGPVVLVVDDAHWADRPSLQALTFALRRLRADRVLALVMVRDLVDAQLPDGLRRLLMDE 243 Query: 149 LTGLPVAAVVELARLRGIT-IHPT------LADRLTRHAGGNPRDVLALFDEVPASAWAR 201 T + ++ LR ++ H T RL H GGNP AL +EVP A+ Sbjct: 244 RTVRLLLEGLDDTELRALSSAHATGPLSWRACARLRAHTGGNPLHARALLEEVPTEAFDN 303 Query: 202 LDSSLPAPRHVVERVATQLDSCGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 261 LD LP PR V +L + Sbjct: 304 LDVPLPVPRSFAMLVVARLAAA--------------PVQGRELATAASVLGAHPTLVQAA 349 Query: 262 GLSGPSEPLAALDEAVDAGLV 282 + G EPL+AL++A+ AGL+ Sbjct: 350 AVGGVDEPLSALEQAIAAGLL 370 >tr|D3D494|D3D494_9ACTO Tax_Id=102897 SubName: Full=Transcriptional regulator, LuxR family;[Frankia sp. EUN1f] Length = 1108 Score = 169 bits (429), Expect = 1e-39 Identities = 150/491 (30%), Positives = 204/491 (41%), Gaps = 21/491 (4%) Query: 406 VESLRETPLRNAVLAYLAILRGRATEAEVRLRRAWDIVN----AERDPETAALIAQRYVL 461 V R T R+ +L A RG A EAE RLR AW + A+ DP A +A Sbjct: 603 VRGFRPTAWRDYLLGRFAFQRGDADEAETRLRSAWKRCDPDGGADADPLLGARVAGWLAA 662 Query: 462 HSLVRGRGTELVRWADTALRLADRESPTAVESXXXXXXXXXXXXXXXXXXXXYDELAERI 521 + G E WA AL L+ + + D + Sbjct: 663 LYQTKLLGAESAEWAGRALALSPGHAAFDLIGQIRMGGLAMSGHLDAVLESVADLPDPAV 722 Query: 522 THGAQAQRVTLGRGWLQLIRDDVDGARSNLESAIATANLGGSSRITLWAMAW---LARAH 578 A + GRG L + DD GAR +L +A G R L+ ++ LA+A Sbjct: 723 ASMADLDMLA-GRGSLHALVDDFAGARRDLGGVLAA----GRDRSLLFRVSVTTALAQAE 777 Query: 579 FVSGDWDAALATVVSGRDLAASSGITITTPLLEWIAAQISALRGDWETAHAAVQAADRVT 638 + +G WD A L A S P + + A RG W A V R T Sbjct: 778 YRAGLWDDAAIHCDHALSLMADSDDGALVPYCHQVGVLVPAARGHWVEAEEHV----RTT 833 Query: 639 QDYEMMRIPTILARAQVAEAEADYPKXXXXXXXXXXXXXXXXGTVL--TEPGYWPWPDVL 696 Q + P ++A A +A A + G + EPG W D L Sbjct: 834 QAFAESGFPYLVASAAIATAHLARARGLPAEIVAALEPPVRSGLLDLDAEPGVSGWQDTL 893 Query: 697 ANALVIDGALDEADEFLRPHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEES 756 +ALV G L A+E L E AR+RG R+AM F Sbjct: 894 VDALVEVGDLGRAEEVLIRFEVAARQRGRRAAMAAAARSRGNLEARRDNVSAADRAFRAG 953 Query: 757 LALLDGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDREL 816 LA + + L ++ A ++ YG LRRAG+ DA + A + + L A Y+ RC+ EL Sbjct: 954 LAEGEHVDLPFEEALLHHLYGAFLRRAGRPADAIRQLRAAHETFSLLDARPYLDRCESEL 1013 Query: 817 KAGGLHQLRGSR---DSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYA 873 AGG G R D+ LT E AV LVA GL+NR+VA EL +S KTV++HL V+ Sbjct: 1014 VAGGWAPRDGCRREPDASRLTTPELAVAKLVAAGLTNRQVARELVLSEKTVEHHLRAVFG 1073 Query: 874 KLGVRSRAELA 884 KLGV +R +L+ Sbjct: 1074 KLGVTARTQLS 1084 Score = 83.6 bits (205), Expect = 1e-13 Identities = 98/321 (30%), Positives = 129/321 (40%), Gaps = 56/321 (17%) Query: 4 GRDRELSELGEHVA-AAEHTARLVVLTGEPGIGKTALLRDLTQRHGAW---WALGASWET 59 GR L +L VA R+ +L G GIGKTAL R L A WA G ET Sbjct: 172 GRPEALRQLRRAVADVLGGRPRVALLEGPAGIGKTALARHLLGEADAGCVLWASGEEDET 231 Query: 60 DLPGGVLAQLMQD-------DVPD-------------------DPLDGAAHLVD---HVR 90 L GVL QL + D P DPL A LV+ ++ Sbjct: 232 GLSFGVLDQLTAEAARVLGADQPSPSGPGELTGTAGSVRGPSPDPLVAGAALVELLGELQ 291 Query: 91 AAGVRLLLVDDAHHADVESLQALSTLVRHQR-DLPVLVVLATQSVDA-LPIPLAADDVVE 148 +G +L+VDDAH AD SLQAL+ +R R D + +V+ VDA LP L + E Sbjct: 292 RSGPVVLVVDDAHWADRPSLQALTFALRRLRADRVLALVMVRDLVDAQLPDGLRRLLMDE 351 Query: 149 LTGLPVAAVVELARLRGIT-IHPT------LADRLTRHAGGNPRDVLALFDEVPASAWAR 201 T + ++ LR ++ H T RL H GGNP AL +EVP + Sbjct: 352 RTVRLLLEGLDDTELRALSSAHATGPLSWRACARLRAHTGGNPLHARALLEEVPTEVFDN 411 Query: 202 LDSSLPAPRHVVERVATQLDSCGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 261 LD LP PR V +L + Sbjct: 412 LDVPLPVPRSFAMLVVARLAAA--------------PVQGRELATAASVLGAHPTLVQAA 457 Query: 262 GLSGPSEPLAALDEAVDAGLV 282 + G EPL+AL++A+ AGL+ Sbjct: 458 AVGGVDEPLSALEQAIAAGLL 478 >tr|Q8FN51|Q8FN51_COREF Tax_Id=152794 SubName: Full=Putative transcription regulator;[Corynebacterium efficiens] Length = 731 Score = 162 bits (411), Expect = 2e-37 Identities = 112/350 (32%), Positives = 161/350 (46%), Gaps = 11/350 (3%) Query: 535 GWLQLIRDDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSG 594 GWL L+ DD AR L + G S I LW A+LARAH+V G++ A A V G Sbjct: 385 GWLSLVYDDPTQARQLL----SRRRHGDSELIGLWQSAFLARAHYVLGEFPQAAAVVERG 440 Query: 595 RDLAASSGITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQ 654 +G + P+L W AQ++AL G + + + + ++P + R Sbjct: 441 LATGDRTGTPLLEPVLLWTGAQVAALSGQENLSRHYLSRIAVPGDAFMIQKLPAAMGRMI 500 Query: 655 VAEAEADYPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEFLR 714 VA D T +PG+W W D+ A +L+ G +D A + Sbjct: 501 VAAMVYD---TRTAATAGDNLASIVYDTDTQQPGFWAWEDMYALSLIRSGRVDTAALVME 557 Query: 715 PHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARVNF 774 + ++ G S E++ + + + AR+ F Sbjct: 558 ESAQRQQDSGILSLRARNLVPSAIIEIQRGAAARGVKMLSEAVDAITSVTMPAYEARILF 617 Query: 775 AYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVE-L 833 +G LRR G+R A + A +++ ++GA T ARC E + GL GSR S + L Sbjct: 618 EFGLVLRRMGRRSQAAEMFTRAEEVFTAMGAVTMAARCAGERRVSGLG---GSRRSPQGL 674 Query: 834 TPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAEL 883 TPQE+ +TALV +G SN EVA EL +S KTV+YHLTRVY K GV RA L Sbjct: 675 TPQEEQITALVVEGASNAEVARELSLSTKTVEYHLTRVYKKFGVNGRAAL 724 >tr|C8NQR0|C8NQR0_COREF Tax_Id=196164 SubName: Full=Transcription regulator;[Corynebacterium efficiens YS-314] Length = 727 Score = 162 bits (411), Expect = 2e-37 Identities = 112/350 (32%), Positives = 161/350 (46%), Gaps = 11/350 (3%) Query: 535 GWLQLIRDDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSG 594 GWL L+ DD AR L + G S I LW A+LARAH+V G++ A A V G Sbjct: 381 GWLSLVYDDPTQARQLL----SRRRHGDSELIGLWQSAFLARAHYVLGEFPQAAAVVERG 436 Query: 595 RDLAASSGITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQ 654 +G + P+L W AQ++AL G + + + + ++P + R Sbjct: 437 LATGDRTGTPLLEPVLLWTGAQVAALSGQENLSRHYLSRIAVPGDAFMIQKLPAAMGRMI 496 Query: 655 VAEAEADYPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEFLR 714 VA D T +PG+W W D+ A +L+ G +D A + Sbjct: 497 VAAMVYD---TRTAATAGDNLASIVYDTDTQQPGFWAWEDMYALSLIRSGRVDTAALVME 553 Query: 715 PHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARVNF 774 + ++ G S E++ + + + AR+ F Sbjct: 554 ESAQRQQDSGILSLRARNLVPSAIIEIQRGAAARGVKMLSEAVDAITSVTMPAYEARILF 613 Query: 775 AYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVE-L 833 +G LRR G+R A + A +++ ++GA T ARC E + GL GSR S + L Sbjct: 614 EFGLVLRRMGRRSQAAEMFTRAEEVFTAMGAVTMAARCAGERRVSGLG---GSRRSPQGL 670 Query: 834 TPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAEL 883 TPQE+ +TALV +G SN EVA EL +S KTV+YHLTRVY K GV RA L Sbjct: 671 TPQEEQITALVVEGASNAEVARELSLSTKTVEYHLTRVYKKFGVNGRAAL 720 >tr|Q8NN19|Q8NN19_CORGL Tax_Id=1718 SubName: Full=ATP-dependent transcriptional regulator, LuxR family; SubName: Full=DNA-binding HTH domains;[Corynebacterium glutamicum] Length = 687 Score = 157 bits (396), Expect = 9e-36 Identities = 110/354 (31%), Positives = 163/354 (46%), Gaps = 20/354 (5%) Query: 535 GWLQLIRDDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSG 594 GWL L+ DD AR L + G S + LW A+LARAH+V G++ A A V G Sbjct: 349 GWLALVYDDPLTARRLL------SRRGPSDLVGLWQSAFLARAHYVLGEFQEASAVVERG 402 Query: 595 RDLAASSGITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQ 654 +G ++ P+ W AQ++A+ G E A+ +Q + + ++ + + Sbjct: 403 LATGDRTGASLLEPVHLWTGAQVAAMTGRTELANHYLQRLTVPDDAFLIQKLSASMGKLI 462 Query: 655 VAEAEADYPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEFLR 714 A +D T +PG+W W D+ A +L+ G +D A + Sbjct: 463 TASMTSD---TRAATLAGDRMASVVYTTNTQQPGFWAWEDMYAISLIRTGRIDAAAAVMD 519 Query: 715 --PHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARV 772 P + R E++ L+ + + AR+ Sbjct: 520 GIPDSTIPSLRARNLV------PQANIEIQRGSTARGVKMLSEAVDLISSVNMPAYEARI 573 Query: 773 NFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVE 832 F YG LRR G+R A + A +++ ++GA T ARC E + G+ R ++ Sbjct: 574 LFEYGLVLRRMGRRSQAAEMFTHAEEVFTAMGAVTLAARCHGERRVAGVGPRRSAQG--- 630 Query: 833 LTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAAL 886 LTPQE+ +TALV G SN+EVA EL +S KTV+YHLTRVY KLGV SR EL L Sbjct: 631 LTPQEEQITALVVDGCSNQEVARELSLSAKTVEYHLTRVYKKLGVSSRGELREL 684 Score = 49.7 bits (117), Expect = 0.002 Identities = 44/121 (36%), Positives = 55/121 (45%), Gaps = 14/121 (11%) Query: 96 LLLVDDAHHADVESLQALSTLVRHQRDLPVLVVLATQSVDALPIPLAADDVVELTGLPVA 155 +++VDD H AD + +Q LV H + L VL + IP A D L LP Sbjct: 68 IVVVDDVHLADKDDIQKTLNLV-HTKGLTVLATAPHR------IPGATD----LLALPPL 116 Query: 156 AVVELARL-RGITIH--PTLADRLTRHAGGNPRDVLALFDEVPASAWARLDSSLPAPRHV 212 V E A L R I H PT A RL AGG P+ + L D P W+ +L P H Sbjct: 117 TVPETALLARQIVGHCTPTTAHRLNDAAGGLPQLIRELLDATPIDHWSNDRPTLTLPEHW 176 Query: 213 V 213 V Sbjct: 177 V 177 >tr|A4QGB4|A4QGB4_CORGB Tax_Id=340322 SubName: Full=Putative uncharacterized protein;[Corynebacterium glutamicum] Length = 687 Score = 156 bits (395), Expect = 1e-35 Identities = 110/354 (31%), Positives = 163/354 (46%), Gaps = 20/354 (5%) Query: 535 GWLQLIRDDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSG 594 GWL L+ DD AR L + G S + LW A+LARAH+V G++ A A V G Sbjct: 349 GWLALVYDDPLTARRLL------SRRGPSDLVGLWQSAFLARAHYVLGEFQEASAIVERG 402 Query: 595 RDLAASSGITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQ 654 +G ++ P+ W AQ++A+ G E A+ +Q + + ++ + + Sbjct: 403 LATGDRTGASLLEPVHLWTGAQVAAMTGRTELANHYLQRLTVPDDAFLIQKLSASMGKLI 462 Query: 655 VAEAEADYPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDVLANALVIDGALDEADEFLR 714 A +D T +PG+W W D+ A +L+ G +D A + Sbjct: 463 TASMTSD---TRAATLAGDRMASVVYTTNTQQPGFWAWEDMYAISLIRTGRIDAAAAVMD 519 Query: 715 --PHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARV 772 P + R E++ L+ + + AR+ Sbjct: 520 GIPDSTIPSLRARNLV------PQANIEIQRGSTARGVKMLSEAVDLISSVNMPAYEARI 573 Query: 773 NFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVE 832 F YG LRR G+R A + A +++ ++GA T ARC E + G+ R ++ Sbjct: 574 LFEYGLVLRRMGRRSQAAEMFTHAEEVFTAMGAVTLAARCHGERRVAGVGPRRSAQG--- 630 Query: 833 LTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAAL 886 LTPQE+ +TALV G SN+EVA EL +S KTV+YHLTRVY KLGV SR EL L Sbjct: 631 LTPQEEQITALVVDGCSNQEVARELSLSAKTVEYHLTRVYKKLGVSSRGELREL 684 Score = 49.7 bits (117), Expect = 0.002 Identities = 44/121 (36%), Positives = 55/121 (45%), Gaps = 14/121 (11%) Query: 96 LLLVDDAHHADVESLQALSTLVRHQRDLPVLVVLATQSVDALPIPLAADDVVELTGLPVA 155 +++VDD H AD + +Q LV H + L VL + IP A D L LP Sbjct: 68 IVVVDDVHLADKDDIQKTLNLV-HTKGLTVLATAPHR------IPGATD----LLALPPL 116 Query: 156 AVVELARL-RGITIH--PTLADRLTRHAGGNPRDVLALFDEVPASAWARLDSSLPAPRHV 212 V E A L R I H PT A RL AGG P+ + L D P W+ +L P H Sbjct: 117 TVPETALLARQIVGHCTPTTAHRLNDAAGGLPQLIRELLDATPIDHWSNDRPTLTLPEHW 176 Query: 213 V 213 V Sbjct: 177 V 177 >tr|C7QAL5|C7QAL5_CATAD Tax_Id=479433 SubName: Full=Transcriptional regulator, LuxR family;[Catenulispora acidiphila] Length = 953 Score = 147 bits (370), Expect = 9e-33 Identities = 150/544 (27%), Positives = 227/544 (41%), Gaps = 35/544 (6%) Query: 369 ASRLTSDPLLRDERLTRSXXXXXXXXXXXXXXQLIPVVESLRETPLRNAVLAYLAILRGR 428 AS L+ R+ RL + +L VE LR+ VL L +L R Sbjct: 407 ASALSESREDRERRLLTACAQSLVTMQPVAAAKLRAEVEDCAPGALRSCVLGGLDMLDNR 466 Query: 429 ATEAEVRLRRAWDIVNAERDPETAALIAQRYVLHSLVRG-RGTELVRWADTALRLADRES 487 EAE RL AW+ + A++A ++ ++R RG E A L + D + Sbjct: 467 LVEAEARLAEAWEQARTDPGSGWLAVLAGTFLTVLMMRNVRGAETAAVAAQTLAVGDLDP 526 Query: 488 PTAVESXXXXXXXXXXXXXXXXXXXXYDELAERITHGAQAQRVTLG-RGWLQLIRDDVDG 546 T + L + Q TL RG ++L D++ Sbjct: 527 ATTDFTRAVMATGRMWDQGPRVALADLGHLPAEASAATNHQLDTLATRGVMRLFLGDLEA 586 Query: 547 ARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAASSGITIT 606 AR +L G SR++ ++++ LA A ++SGDW A+ + + A G + Sbjct: 587 ARRDLALVARRDQQGAGSRLSQFSLSLLAVADYLSGDWTASQSAAEQALAIVAVQGNVLG 646 Query: 607 TPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPT-----ILARAQVAEAEAD 661 E+ A + A G W+ A V +TQ M+ P +LA A VA+A AD Sbjct: 647 DAAAEFAAVCVHAGSGRWDDARRHVDTLSHLTQ---MIGTPVELVYGVLAEATVAQARAD 703 Query: 662 YPKXXXXXXXXXXXXXXXXG----TVLTEPGYWPWPDVLANALVIDGAL--DEADEFLRP 715 Y V EP +W W +L+++G + ++ D R Sbjct: 704 YGAMLRALRPALDDRDRADAGGEVRVRYEP-FWLWQQ----SLLVEGLVGTEQLDHAARA 758 Query: 716 HEEV-ARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLD-------GLPLRY 767 +E+ AR G +E+ L+ PL Sbjct: 759 LDELRARHDGTGYLEVVVARLAGRLAEAQGRPRDALKIYEKVLSQTPDPTNPSASAPLH- 817 Query: 768 DRARVNFAYGQTLRRAGK--RRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLR 825 +A + A+G+ L G RR+A + TA D + +L A ++ RC+ +L A GL Sbjct: 818 -QAMLEQAHGRLLAATGAAPRREAARWLRTAHDRFSTLRATPFLERCEADLSAIGLAAPA 876 Query: 826 GSRDSV-ELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAELA 884 G+ V LT +E +V L+A G +NRE AAELYVSPK V+YHL+ +YAKLG+ SR +LA Sbjct: 877 GTATRVLALTEREMSVAYLIADGRTNREAAAELYVSPKAVEYHLSNIYAKLGISSRRQLA 936 Query: 885 -ALR 887 ALR Sbjct: 937 EALR 940 Score = 66.6 bits (161), Expect = 2e-08 Identities = 79/260 (30%), Positives = 110/260 (42%), Gaps = 37/260 (14%) Query: 1 MLCGRDRELSELGEHVAAAEH-TARLVVLTGEPGIGKTALLRDLTQRHGAWW---ALGAS 56 + GR E L E + A L V+ GE GIGK+ L+R L + A+G Sbjct: 18 LFVGRADERRRLAECAGRVRNGDAWLAVVEGEAGIGKSTLVRHLASTLSDFTILSAIGDQ 77 Query: 57 WETDLPGGVLAQLMQ----DDVPDDPL---DGAAHLVDHVRAAGVRLLL----------- 98 ET+ PGGV QL Q + + PL +A L H + LLL Sbjct: 78 SETEFPGGVCGQLTQRVDREVLSSFPLLADAASAGLPPHAIGGQLLLLLGALQEARGPVA 137 Query: 99 --VDDAHHADVESLQALSTLVRHQRDLPVLVVLATQS-------VDALPIPLAADDVVEL 149 VDD AD S+Q L ++R VLVV+ T+S +D L L +++ Sbjct: 138 VIVDDVQWADALSMQTLGFVLRRLWADRVLVVMVTRSDQDNVSEMDRLIRSLERTVHLKV 197 Query: 150 TGLPVAAVVELAR-LRGITIHPTLADRLTRHAGGNPRDVLALFDEVPASAWARLDSSL-- 206 GL + V EL + L P L RL +A G+P V + EVP D +L Sbjct: 198 GGLDDSEVAELVKGLTDAPPTPPLIRRLRAYAHGHPLYVRTVLSEVPVETLR--DDALDR 255 Query: 207 -PAPRHVVERVATQLDSCGP 225 P PR ++ + Q+D P Sbjct: 256 WPVPRSLLVGIKDQMDRLPP 275 >tr|Q9XAT8|Q9XAT8_RHOER Tax_Id=1833 (thcG)SubName: Full=ThcG;[Rhodococcus erythropolis] Length = 927 Score = 114 bits (285), Expect = 7e-23 Identities = 98/348 (28%), Positives = 145/348 (41%), Gaps = 21/348 (6%) Query: 542 DDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAASS 601 D + G R + I GSS + A+ ++A SG W + L+ + Sbjct: 579 DRLPGCREAVSRVIRDGGALGSS---MPALMFVALDDLYSGRWRTSADAADELIALSEET 635 Query: 602 GITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTIL--ARAQVAEAE 659 G + + +IAA +A RG+ + +A + + R+ A A+ A Sbjct: 636 GYHLFAQVGHYIAAMTAAQRGNLDACRRHCEAVWEWARPRGLQRLENCAHQAAARAALGA 695 Query: 660 ADYPKXXXXXXXXXXXXXXXXGTVLTEPGYWPW--PDVL--ANALVIDGALDEADEFLRP 715 AD+ T + PG P P+ L A+ LV R Sbjct: 696 ADFETAFRH------------ATAICAPGVLPPFNPEALWSASDLVEAAVRTGRHAAARR 743 Query: 716 HEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARVNFA 775 H + R+ G FEE+L L D ++ A Sbjct: 744 HADALRDAGVGHLSSRLALSSAMVTAMTSTAEDMVRYFEEALGLPDIEQWPFEVGHARLA 803 Query: 776 YGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVELTP 835 YG+ +RR G RDA +A ARD + LGAH++ AR EL+A G+ + + LTP Sbjct: 804 YGEAVRRQGLNRDARVQLAAARDCFEELGAHSWAARAAAELRATGMTRTGRGKSGEALTP 863 Query: 836 QEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAEL 883 QE V L A GLSN ++A+ L++SP+TV HL V+ KLG+ SRAEL Sbjct: 864 QELEVARLAATGLSNPQIASRLFLSPRTVSSHLYHVFPKLGITSRAEL 911 Score = 45.8 bits (107), Expect = 0.029 Identities = 45/150 (30%), Positives = 62/150 (41%), Gaps = 34/150 (22%) Query: 2 LCGRDRELSELGEHVAAAEHTARLVVLTGEPGIGKTALL---RDLTQRHGAWWALGA--S 56 L GR+ EL+EL + A ++LTGEPG+GKTALL +L G G+ Sbjct: 16 LVGREGELAELAAFLDMAGTNGAALLLTGEPGVGKTALLDATAELAVAKGVRVVRGSGVE 75 Query: 57 WETDLPGGVLAQLMQDDVPDD----------------------------PLDGAAHLVDH 88 +ETD+ L QL+ +PD+ L+ A L D Sbjct: 76 YETDISFAGLHQLV-GSLPDELGRLPRSTREALEVALGLGAGPASSRIAVLNAALALFDE 134 Query: 89 VRAAGVRLLLVDDAHHADVESLQALSTLVR 118 LL+VDD H D S A+ + R Sbjct: 135 AAKEQPFLLVVDDLHAVDQASQAAVGFVAR 164 >tr|D3FBN2|D3FBN2_CONWI Tax_Id=469383 SubName: Full=Transcriptional regulator, LuxR family;[Conexibacter woesei] Length = 938 Score = 113 bits (283), Expect = 1e-22 Identities = 98/335 (29%), Positives = 140/335 (41%), Gaps = 8/335 (2%) Query: 554 AIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAASSGITITTPLLEWI 613 ++A A G++ WA+A + + GD+ A A LA +G T L Sbjct: 603 SVAQARTRGAAGTLAWALAGVVVDDLMRGDFATAEANAQEALRLARETGQPNTACLHAAT 662 Query: 614 AAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTILARAQVAEAEADYPKXXXXXXXXX 673 ++ LRG E A + A V ++ R+ L + A A+A + Sbjct: 663 LGNLALLRGREEEGVAQLAA---VLEEAMRRRLAHPLTSVRAALADAALARGRADEAVAQ 719 Query: 674 XXXXXXXGTVLTEPGYWPWP-DVLANALVIDGALDEADEFLRPHEEVARERGHRSAMXXX 732 G V PG + A V G + + +EE G AM Sbjct: 720 FEQMWRGGPVPHHPGIAHYSLAAFVEASVRAGRPEACRDLFAGYEEWVLRTG---AMPML 776 Query: 733 XXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYDRARVNFAYGQTLRRAGKRRDADAV 792 FE SL L G R+D AR +G+ LRR +R DA Sbjct: 777 AQLDRCRALYAEDPAEAERLFERSLELHAGNDQRFDEARTELLFGEFLRRERRRVDARVH 836 Query: 793 IATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSRDSVE-LTPQEDAVTALVAQGLSNR 851 + A D + +GA + R EL+A G R +++ LTPQE + VA G NR Sbjct: 837 LRAALDTFERIGAPVWAERARAELRASGETARRRDPSTIDQLTPQELQIVRSVAGGAMNR 896 Query: 852 EVAAELYVSPKTVQYHLTRVYAKLGVRSRAELAAL 886 EVAA+L++SP+TV YHL +V+ KLG+ SRAEL L Sbjct: 897 EVAAQLFISPRTVDYHLRKVFRKLGISSRAELIRL 931 Score = 55.8 bits (133), Expect = 3e-05 Identities = 72/247 (29%), Positives = 96/247 (38%), Gaps = 57/247 (23%) Query: 1 MLCGRDRELSELGEHVAAAEH-TARLVVLTGEPGIGKTALLRDL--TQRHGA-------- 49 ML GR+ EL +G +A A ++ L GEPGIGK+ALL T R A Sbjct: 1 MLHGRESELVAIGRVLAGARAGDGGVLALRGEPGIGKSALLDAAIATARAAAPGAAPGTA 60 Query: 50 ----WWALGASWETDLPGGVLAQLM---------------------------QDDVPDDP 78 A+G E+ L L QL+ + P +P Sbjct: 61 PMRVLRAVGVEAESALAYATLHQLLLPLLDHADVLPPPQRRALDCAFGLAESEPAAPGEP 120 Query: 79 ------------LDGAAHLVDHVRAAGVRLLL--VDDAHHADVESLQALSTLVRHQRDLP 124 L G A L AAG R LL VDD AD S AL+ R R P Sbjct: 121 AAPGETAGATPFLVGVAALTLLSEAAGERPLLCVVDDLQWADAASRDALAFAARRLRAEP 180 Query: 125 VLVVLATQSVDALPIPLAADDVVELTGLPVAAVVELARLR-GITIHPTLADRLTRHAGGN 183 + ++L + +A+P+ A + LTGL L R G + P + L R GGN Sbjct: 181 IALLLGIRDDEAVPVDTAGIAELRLTGLGDGDASALLDERWGNRVAPATREALMRVTGGN 240 Query: 184 PRDVLAL 190 P ++ L Sbjct: 241 PLALIEL 247 >tr|D2SDB3|D2SDB3_GEOOG Tax_Id=526225 SubName: Full=Transcriptional regulator, LuxR family;[Geodermatophilus obscurus] Length = 904 Score = 108 bits (269), Expect = 5e-21 Identities = 67/134 (50%), Positives = 83/134 (61%), Gaps = 4/134 (2%) Query: 757 LALLDG---LPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCD 813 LA LD P DRAR + AYG+ LRRA +R DA + A L+ LGA + R Sbjct: 768 LAALDAHAASPRLPDRARTHLAYGEHLRRARRRVDAREHLRAALTLFEELGAAPHAERAA 827 Query: 814 RELKAGG-LHQLRGSRDSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVY 872 +EL+A G + R + ELT QE V LV QGLSNR+VAA L+VSP+TV +HL V+ Sbjct: 828 QELRASGETARRRDVTTTTELTAQERQVAGLVRQGLSNRDVAARLFVSPRTVDFHLRNVF 887 Query: 873 AKLGVRSRAELAAL 886 +KLGV SRAEL AL Sbjct: 888 SKLGVASRAELTAL 901 >tr|A8L5P7|A8L5P7_FRASN Tax_Id=298653 SubName: Full=Transcriptional regulator, LuxR family;[Frankia sp.] Length = 236 Score = 105 bits (261), Expect = 4e-20 Identities = 73/193 (37%), Positives = 94/193 (48%), Gaps = 3/193 (1%) Query: 699 ALVIDGALDEADEFLRPHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLA 758 ALV G L A++ L E AR RG RSAM F LA Sbjct: 28 ALVEVGDLKRAEQVLIRFETAARRRGRRSAMAAAARNRGNLEALRDNPGAADAAFRAGLA 87 Query: 759 LLDGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKA 818 + + L ++RA + +YG LR AG+ D+ + A D + L A Y+ RC+ EL A Sbjct: 88 EAEQIELPFERALLRHSYGSFLRGAGRPADSVRQLQAAHDTFTLLDARPYLDRCESELVA 147 Query: 819 GGLHQLRG---SRDSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKL 875 G G RD+ LT E AV LVA GL+NR+VA EL +S KTV++HL V+ KL Sbjct: 148 CGWTPREGRRRERDASRLTTLELAVAKLVAAGLTNRQVARELVLSEKTVEHHLRAVFGKL 207 Query: 876 GVRSRAELAALRR 888 V SR RR Sbjct: 208 HVTSRPRDGTRRR 220 >tr|D3F6D4|D3F6D4_CONWI Tax_Id=469383 SubName: Full=Transcriptional regulator, LuxR family;[Conexibacter woesei] Length = 928 Score = 103 bits (256), Expect = 2e-19 Identities = 110/383 (28%), Positives = 161/383 (42%), Gaps = 34/383 (8%) Query: 519 ERITHGAQAQRVTLGR----GWLQLIRDDVDGARSNLESAI----ATANLGGSSRITLWA 570 ER+T A+A+R+ G L+ D L +AI LG R+ + Sbjct: 545 ERLTSAARAERLDTDAARFFGPAALVVGAFDLGNDFLAAAIDGLRTEGRLGHLPRLLVLH 604 Query: 571 MAWLARAHFVSGDWDAALATVVSGRDLAASSGITITTPLLEWIAAQISALRGDWETAHAA 630 AR DWD A+ R LA + + + A ++A+RGD Sbjct: 605 ANMAARLC----DWDVAIPAAEEARRLAEELAEPQWSAAADTVIALVAAMRGD------- 653 Query: 631 VQAADRVTQDYEMMRIPTILARAQVAEAEADYPKXXXXXXXXXXXXXXXXGTVLTEPGYW 690 Q ADR+ + E++ P A + A A + + + +P Sbjct: 654 DQEADRLATEAELVAEPV---GANITMAFAQFGRTLAALAAGRHADAYASAARVFDPADS 710 Query: 691 PWPDVLANALVID--GALDEADEFLRPHEEVARER---GHRSAMXXXXXXXXXXXXXXXX 745 V+++ L+ D A + DE VA+ G R Sbjct: 711 AHHPVISSWLIADLADAARQIDEQTAARARVAQVEAMAGERPGTWIALSLRHARALVADP 770 Query: 746 XXXXXXXFEESLALLDGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGA 805 FEE+LA D + RAR+ AYGQ LRR + ++ AV+ ARD + LG Sbjct: 771 AEAGER-FEEALAT-DLARWPFQRARIQLAYGQWLRRDRRVAESRAVLRAARDTFDGLGC 828 Query: 806 HTYVARCDRELKAGG---LHQLRGSRDSVELTPQEDAVTALVAQGLSNREVAAELYVSPK 862 + + REL+A G +L +RD +LT QE + L AQGLSNRE+ LY+S + Sbjct: 829 APWGEQARRELRASGERSRRRLPEARD--QLTAQELQIAQLAAQGLSNREIGRRLYLSHR 886 Query: 863 TVQYHLTRVYAKLGVRSRAELAA 885 T+ HL RV+ KLG+ SR ELAA Sbjct: 887 TISTHLYRVFPKLGITSRGELAA 909 Score = 52.8 bits (125), Expect = 2e-04 Identities = 68/231 (29%), Positives = 94/231 (40%), Gaps = 40/231 (17%) Query: 2 LCGRDRELSELGEHVAAAEHTARLVVLTGEPGIGKTALLRDLTQ--RHGAWWAL---GAS 56 L GR +E L + +++VL GEPGIGK+ LL Q R A L G Sbjct: 12 LVGRVQEQRLLTSLLDEVGDRGQVLVLRGEPGIGKSRLLSVAAQTARDRAMTVLTATGVQ 71 Query: 57 WETDLPGGVLAQLMQD------DVPD------DPLDGAAH---------------LVDHV 89 E LP L Q+ + ++P D G H LV V Sbjct: 72 SEAHLPFAGLHQMFRPVRRRAVELPAIQRSALDAAFGLTHDVAPEHYRIAMASLDLVSEV 131 Query: 90 RAAGVRLLLVDDAHHADVESLQALSTLVRHQRDLPVLVVLATQSVDALPIPLAADDVVE- 148 LL+V+DAH D + L+ + R PVL+++A + D P LA + E Sbjct: 132 AGDAPLLLIVEDAHWLDPPTADVLAFVARRIESDPVLLLVAAR--DGYPSALADAGLPEH 189 Query: 149 -LTGLPVAAVVELARLRGITIHPTLADRLTRHAGGNPRDVLALFDEVPASA 198 L+GL A L + T +R+ R A GNP +L E+PA A Sbjct: 190 RLSGLDDATAATLLDAVAPDLPRTARNRVLREAAGNPLALL----ELPAVA 236 >tr|D3C4I5|D3C4I5_9ACTO Tax_Id=648999 SubName: Full=Transcriptional regulator, LuxR family;[Micromonospora sp. L5] Length = 924 Score = 102 bits (254), Expect = 3e-19 Identities = 60/132 (45%), Positives = 79/132 (59%), Gaps = 1/132 (0%) Query: 753 FEESLALLDGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARC 812 F +LA D + +RAR +YGQ LRRA +RRDA + A L+ +LGA + RC Sbjct: 782 FAAALARCDPAVVPLERARTLLSYGQRLRRARRRRDARVQLHAALRLFEALGAQGWARRC 841 Query: 813 DRELKAGGLHQLR-GSRDSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRV 871 E+ A G G R LT QE + VA+GL+NRE+AA +++SPKTV+YHL V Sbjct: 842 RTEIDATGRRPPEPGDRTVDRLTGQERLIALHVAEGLTNREIAARVFLSPKTVEYHLGNV 901 Query: 872 YAKLGVRSRAEL 883 Y KL +RSR EL Sbjct: 902 YRKLRLRSRPEL 913 Score = 57.4 bits (137), Expect = 9e-06 Identities = 76/250 (30%), Positives = 101/250 (40%), Gaps = 43/250 (17%) Query: 2 LCGRDRELSELGEHVA-AAEHTARLVVLTGEPGIGKTALLRDLTQRHGAWWAL---GASW 57 L GR E LG +A A + +V+ G G+GKTALL R L GA + Sbjct: 22 LLGRADECRRLGALLADAVDGHGGALVVRGAAGVGKTALLEHCAARSTGMRVLRATGAPF 81 Query: 58 ETDLPGGVLAQLMQD------DVPDDPLD---------GAAHLVDHVRA--AGVRLL--- 97 E +LP L QL + D+P D G + V+ + A A + LL Sbjct: 82 EAELPFSALHQLARPLLHRLGDLPAQQADALRTVFAIGGGSRPVNRLAAYVATLSLLTTA 141 Query: 98 --------LVDDAHHADVESLQALSTLVRHQRDLPVLVVLATQSVDALPIPLAADDVVEL 149 LVDDAH D S +AL R V VV A + DA P + + L Sbjct: 142 AEDTPVLCLVDDAHWIDPASAEALLFTARRLLADRVAVVFAAR--DAPAFPASGLPELPL 199 Query: 150 TGLPVAAVVELARLRGITIHPTLADRLTRHAGGNP---RDVLALFDEVPASAWARLDSSL 206 TGLP + LA G + P +A L GNP ++ A E + W L Sbjct: 200 TGLPRDDAIRLAMRAG--LDPRVAADLAAATAGNPLALTELPATLSEEHRNGWL----PL 253 Query: 207 PAPRHVVERV 216 P +VER+ Sbjct: 254 REPLVLVERI 263 >tr|D1S4P0|D1S4P0_9ACTO Tax_Id=644283 SubName: Full=Transcriptional regulator, LuxR family;[Micromonospora aurantiaca ATCC 27029] Length = 464 Score = 102 bits (254), Expect = 3e-19 Identities = 60/132 (45%), Positives = 79/132 (59%), Gaps = 1/132 (0%) Query: 753 FEESLALLDGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARC 812 F +LA D + +RAR +YGQ LRRA +RRDA + A L+ +LGA + RC Sbjct: 322 FAAALARCDPAVVPLERARTLLSYGQRLRRARRRRDARVQLHAALRLFEALGAQGWARRC 381 Query: 813 DRELKAGGLHQLR-GSRDSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRV 871 E+ A G G R LT QE + VA+GL+NRE+AA +++SPKTV+YHL V Sbjct: 382 RTEIDATGRRPPEPGDRTVDRLTGQERLIALHVAEGLTNREIAARVFLSPKTVEYHLGNV 441 Query: 872 YAKLGVRSRAEL 883 Y KL +RSR EL Sbjct: 442 YRKLRLRSRPEL 453 >tr|D2ASM3|D2ASM3_STRRD Tax_Id=479432 SubName: Full=ATPase-like protein;[Streptosporangium roseum] Length = 919 Score = 101 bits (251), Expect = 6e-19 Identities = 57/136 (41%), Positives = 84/136 (61%), Gaps = 2/136 (1%) Query: 753 FEESLAL-LDGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVAR 811 +EE+L L +G P +++AR YG+ LRR + +A + +A + + LGA + R Sbjct: 768 YEEALRLHAEGGPAPFEQARTALLYGERLRRTHRTGEARQPLRSALEAFQRLGAEPWAER 827 Query: 812 CDRELKAGGLHQLRGSRDSVE-LTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTR 870 EL+A G R ++ LTPQE + LVA+G SNR+VAA L++SP+TV+YHL + Sbjct: 828 AHSELRAAGESAARPGPAALNVLTPQELRIARLVAEGASNRDVAARLFLSPRTVEYHLYK 887 Query: 871 VYAKLGVRSRAELAAL 886 VY KLG+ +R ELA L Sbjct: 888 VYPKLGITTRTELARL 903 Score = 55.1 bits (131), Expect = 5e-05 Identities = 75/243 (30%), Positives = 99/243 (40%), Gaps = 39/243 (16%) Query: 1 MLCGRDRELSELGEHVAAAEHTA-RLVVLTGEPGIGKTALLRDLTQRHGA----WWALGA 55 ML GR E + +GE VAAA A + +VL GEPG+GK+ALL DL A A G Sbjct: 1 MLHGRVTERAAIGELVAAARAGAGQALVLRGEPGVGKSALL-DLAAAGSAPMRVLRATGT 59 Query: 56 SWETDLPGGVLAQLMQDDV---------PDDPLDGAAHLVD------HVRAAGV------ 94 ET L G L QL++ + D + GA L + +AGV Sbjct: 60 EPETGLAFGALHQLLRSEAGLLDLLPGPQRDAVRGALGLASSGTDDRFLVSAGVLSLLAE 119 Query: 95 ------RLLLVDDAHHADVESLQALSTLVRHQRDLPVLVVLATQSVDALPIPLAADDVVE 148 L L+DD D S AL R R V +++A + + D + Sbjct: 120 AAVPDGLLCLIDDFQWIDQASADALLFAARRLRTEGVGMLIAVRGDAGAHLRGVPD--LR 177 Query: 149 LTGLPVAAVVELARLR-GITIHPTLADRLTRHAGGNP---RDVLALFDEVPASAWARLDS 204 LTGL + EL R + + DRL GGNP R+V L + L Sbjct: 178 LTGLDSRSAAELLASRSAVPPAQEVGDRLVALTGGNPLALREVAGLLTPDQLAGRTPLPD 237 Query: 205 SLP 207 LP Sbjct: 238 PLP 240 >tr|A0PRC8|A0PRC8_MYCUA Tax_Id=362242 SubName: Full=Conserved hypothetical membrane protein;[Mycobacterium ulcerans] Length = 635 Score = 100 bits (249), Expect = 1e-18 Identities = 105/356 (29%), Positives = 144/356 (40%), Gaps = 33/356 (9%) Query: 542 DDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAASS 601 D +D RS L GG++ I L +A +A SG W A+ T G L + Sbjct: 285 DLIDDFRSVLVPLADREIEGGAATIALATLALVAAYQLASGQWAEAVDTSQRGVALCSQH 344 Query: 602 GITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTIL-ARAQVAE--- 657 + L ISA RGD A + A +V E R+ + A AQ+A Sbjct: 345 HYELFGYQLRGYLGVISACRGDVVRAR---ELAAQVRVWAEPRRVGFLTGAVAQIAILCS 401 Query: 658 -AEADYPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDV--------LANALVIDGALDE 708 AE DY T +T PG +P + L A V L+E Sbjct: 402 FAEGDYESAYLQ------------ATAITAPGEFPPLALHATRTLFDLVEAAVHTDRLNE 449 Query: 709 ADEFLRPHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYD 768 A R H A+ A FE+ L ++ Sbjct: 450 A----RRHVRAAKRLQFADAPPRLAIATGAAEALCASDERAPALFEKVLGHPAVASFPFE 505 Query: 769 RARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSR 828 AR+ AYG LRR + R+A V+ A +++ LGA + R EL+A G + Sbjct: 506 HARIRLAYGMRLRRLRRYRNARVVLRAAAEIFAGLGAEPWTQRARNELRAAGTAVRHSAA 565 Query: 829 -DSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAEL 883 LT QE V L A+GLSN+E+AA L +SP+TV HL R++ KLGV +RA L Sbjct: 566 VGPAPLTAQERLVAELAAKGLSNKEIAARLCLSPRTVGAHLYRLFPKLGVTNRAGL 621 >tr|B2HES6|B2HES6_MYCMM Tax_Id=216594 SubName: Full=Conserved hypothetical membrane protein;[Mycobacterium marinum] Length = 909 Score = 98.6 bits (244), Expect = 4e-18 Identities = 104/356 (29%), Positives = 143/356 (40%), Gaps = 33/356 (9%) Query: 542 DDVDGARSNLESAIATANLGGSSRITLWAMAWLARAHFVSGDWDAALATVVSGRDLAASS 601 D +D RS L GG++ I L +A + SG W A+ T G L + Sbjct: 559 DLIDDFRSVLVPLADREIEGGAATIALATLALVTAYQLASGQWAEAVDTSQRGVALCSQH 618 Query: 602 GITITTPLLEWIAAQISALRGDWETAHAAVQAADRVTQDYEMMRIPTIL-ARAQVAE--- 657 + L ISA RGD A + A +V E R+ + A AQ+A Sbjct: 619 HYELFGYQLRGYLGVISACRGDVVRAR---ELAAQVRVWAEPRRVGFLTGAVAQIAILCS 675 Query: 658 -AEADYPKXXXXXXXXXXXXXXXXGTVLTEPGYWPWPDV--------LANALVIDGALDE 708 AE DY T +T PG +P + L A V L+E Sbjct: 676 FAEGDYESAYLQ------------ATAITAPGEFPPFALHATRTLFDLVEAAVHTDRLNE 723 Query: 709 ADEFLRPHEEVARERGHRSAMXXXXXXXXXXXXXXXXXXXXXXXFEESLALLDGLPLRYD 768 A R H A+ A FE+ L ++ Sbjct: 724 A----RRHVRAAKRLQFADAPPRLAIATGAAEALCASDERAPALFEKVLGHPAVASFPFE 779 Query: 769 RARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKAGGLHQLRGSR 828 AR+ AYG LRR + R+A V+ A +++ LGA + R EL+A G + Sbjct: 780 HARIRLAYGMRLRRLRRYRNARVVLRAAAEIFAGLGAEPWTQRARNELRAAGTAVRHSAA 839 Query: 829 -DSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVRSRAEL 883 LT QE V L A+GLSN+E+AA L +SP+TV HL R++ KLGV +RA L Sbjct: 840 VGPAPLTAQERLVAELAAKGLSNKEIAARLCLSPRTVGAHLYRLFPKLGVTNRAGL 895 >tr|Q5YYT5|Q5YYT5_NOCFA Tax_Id=37329 SubName: Full=Putative transcriptional regulator;[Nocardia farcinica] Length = 894 Score = 98.2 bits (243), Expect = 5e-18 Identities = 56/131 (42%), Positives = 77/131 (58%), Gaps = 2/131 (1%) Query: 758 ALLDGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELK 817 A L P ++ AR YG+ LRR ++ DA A + A +++ LGA + R + EL+ Sbjct: 761 AALAARPRPFEEARTRLVYGEWLRRGRRKSDARAQLRVAHEIFERLGARPWADRAEVELR 820 Query: 818 AGGLHQLRGSRDS--VELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKL 875 A G LTPQE + L AQGLSNR++AA+L++SP+TV +HL + Y KL Sbjct: 821 ALGAATTPRPAGGPLATLTPQELQIVRLAAQGLSNRDIAAQLFLSPRTVGHHLYKAYPKL 880 Query: 876 GVRSRAELAAL 886 GV SRAELA L Sbjct: 881 GVVSRAELAEL 891 Score = 47.8 bits (112), Expect = 0.008 Identities = 74/247 (29%), Positives = 101/247 (40%), Gaps = 38/247 (15%) Query: 1 MLCGRDRELSELGEHVAAAEH-TARLVVLTGEPGIGKTALLRDLTQRHG--AWWALGASW 57 ML GR E + + +A A + +VL GEPGIGKTALL D G + G Sbjct: 1 MLYGRQAEQARIDRLLADARAGRSGALVLRGEPGIGKTALL-DYAAAQGLPTVRSAGVES 59 Query: 58 ETDLPGGVLAQLMQ------DDVPD---DPLDGAAHLVDHV------------------R 90 E +LP L L++ D +P+ L GA L D V Sbjct: 60 EAELPFAGLHLLVRPGMALVDGLPERQRAALRGAFGLGDAVPGDRMLIGLAVLSLLAEEA 119 Query: 91 AAGVRLLLVDDAHHADVESLQALSTLVRHQRDLPVLVVLATQS-VDALPIPLAADDVVEL 149 A L L+DDAH D + + L R V +V AT+S D P P + VV Sbjct: 120 AEQPLLCLIDDAHWLDRATAETLLFAARRLDAEGVAIVFATRSGPDDFPAPGLPELVVPP 179 Query: 150 TGLPVAAVVELARLRGITIHPTLADRLTRHAGGNPRDVLALFDEVPASAWARLDSSLPAP 209 AA + ++ G+ P RL + GNP LAL E+PA P+P Sbjct: 180 LRPEAAAALVDDQVTGLA--PDARMRLLAESAGNP---LAL-RELPAVLATEAVHDGPSP 233 Query: 210 RHVVERV 216 + +R+ Sbjct: 234 LPLTQRL 240 >tr|D3F157|D3F157_CONWI Tax_Id=469383 SubName: Full=Transcriptional regulator, LuxR family;[Conexibacter woesei] Length = 913 Score = 97.8 bits (242), Expect = 6e-18 Identities = 60/128 (46%), Positives = 79/128 (61%), Gaps = 4/128 (3%) Query: 761 DGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDRELKA-G 819 DG P ++RAR A+G+ LRR +R DA A + A + +LGA + R EL A G Sbjct: 783 DGQP--FERARTELAWGERLRRRRRRMDARAPLERALASFRALGAEPWARRAADELAAAG 840 Query: 820 GLHQLRGS-RDSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYAKLGVR 878 G G R EL+P E V +VA G++NREVAA L++SPKT++ HL+R+Y KL VR Sbjct: 841 GTRPDDGPPRGRDELSPHELKVALMVAHGMTNREVAAALFLSPKTIERHLSRIYRKLDVR 900 Query: 879 SRAELAAL 886 SR ELA L Sbjct: 901 SRTELARL 908 Score = 51.2 bits (121), Expect = 7e-04 Identities = 71/272 (26%), Positives = 106/272 (38%), Gaps = 52/272 (19%) Query: 1 MLCGRDRELSELGEHVAAAEHTARLVVLT-GEPGIGKTALL-RDLTQ-RHGA--WWALGA 55 ML GR E+++L E + + A +L GE G+GK+ L+ R L HG A G Sbjct: 1 MLEGRTEEVAQLDERIHSLRDGAAFALLVRGEAGVGKSTLIERALADGAHGMRILRARGH 60 Query: 56 SWETDLPGGVLAQL------------------------MQDDVPDDPLDGAAHLVDHVRA 91 +T++P L +L ++ P D L A L+ + Sbjct: 61 ESDTEIPYAGLLELAAPLLPLRGALPQAQRAAIESAFALEPPTPHDRLAVPAGLLGLLAR 120 Query: 92 AGVR---LLLVDDAHHADVESLQALSTLVRHQRDLPVLVVLATQSVDALPIPLAADDVVE 148 A R L +VDD H D S A+ R V ++LA + A + L D + Sbjct: 121 AAERQPLLAVVDDVHWLDDASRDAILFAARRLFAGGVGMLLAARDGAAPALDLTGLDELS 180 Query: 149 LTGLPVAAVVELARLRGITIHPTLADRLTRHAGGNPRDVL---------------ALFDE 193 LTGL + + L + ++A+ L GNP ++ L D Sbjct: 181 LTGLDTTSALALLHRDASQLPRSVAEALVNATAGNPLALIELPSALTPAQLCGDAPLTDP 240 Query: 194 VPAS-----AWARLDSSLPAPRHVVERVATQL 220 +PAS A+AR + LP P VA L Sbjct: 241 LPASAAVERAYARQVAELPPPTRTALLVAAAL 272 >tr|D6AVB8|D6AVB8_STRFL Tax_Id=457431 SubName: Full=Regulatory protein;[Streptomyces roseosporus NRRL 15998] Length = 917 Score = 97.4 bits (241), Expect = 8e-18 Identities = 53/136 (38%), Positives = 81/136 (59%), Gaps = 1/136 (0%) Query: 753 FEESLALLDGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARC 812 + E++ L + AR + YG+ LRR G+R+ A + TA L +GA + AR Sbjct: 780 YREAIEQLRNCRVATQLARTHLVYGEWLRREGRRQGARQQLRTAHQLLSDMGAEAFAARA 839 Query: 813 DRELKAGGLH-QLRGSRDSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRV 871 REL+A G H + R ++ S LT QE + LVA G ++REV A+L++SP+T++ HL + Sbjct: 840 ARELRATGEHPRSRSAQPSDALTAQELTIARLVATGATSREVGAQLFLSPRTIEAHLRSI 899 Query: 872 YAKLGVRSRAELAALR 887 + KLG+ SR +L LR Sbjct: 900 FRKLGITSRRQLRDLR 915 >tr|A0QT29|A0QT29_MYCS2 Tax_Id=246196 SubName: Full=Transcriptional regulatory protein;[Mycobacterium smegmatis] Length = 897 Score = 97.1 bits (240), Expect = 1e-17 Identities = 52/130 (40%), Positives = 77/130 (59%), Gaps = 1/130 (0%) Query: 755 ESLALLDGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCDR 814 ES+ + L AR YG+ LRRA +R DA + A ++++ +GA + R R Sbjct: 747 ESIEHYERTRLTVQAARARLRYGEWLRRANRRPDAVRELTAAHEVFVRIGAQAFAERARR 806 Query: 815 ELKAGGLHQLR-GSRDSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYA 873 EL A G R R +LT QE V L A+GL+N+E+AA+L++SP TV++HL +V+ Sbjct: 807 ELVAAGPTARRVPGRSGEQLTAQETQVAGLAARGLTNQEIAAQLFISPHTVEWHLRKVFV 866 Query: 874 KLGVRSRAEL 883 KLG+ SR +L Sbjct: 867 KLGITSRRQL 876 Score = 49.7 bits (117), Expect = 0.002 Identities = 70/233 (30%), Positives = 89/233 (38%), Gaps = 57/233 (24%) Query: 2 LCGRDRELSELGEHVAAAEH-TARLVVLTGEPGIGKTALLRDLTQRHGAWWAL------G 54 L GR E L + A + R +VL GEPG+GKTALL L + G Sbjct: 13 LIGRATERGALRQVCADLRSGSGRALVLRGEPGVGKTALLDWLFDEQTGSAGVQVVRVRG 72 Query: 55 ASWETDLPGGVLAQL-------------MQDDV------------PDDPLDGAA--HLVD 87 + + DL L Q+ +Q PD L G A L+ Sbjct: 73 VASDMDLTYAALQQVCAPLLDHLKRLPDLQQQALTVAFGRGPGPQPDRFLVGLAVVELMA 132 Query: 88 HVRAAGVRLLLVDDAHHADVESLQALSTLVRHQRDLPVLVVLATQSVDALPIPLAADDVV 147 AA L +VDDA D SLQAL + R D P+ ++ + ALP Sbjct: 133 AAAAAKPVLCIVDDAQWVDDASLQALVFVARRLPDAPLALLFGVRCGTALP--------- 183 Query: 148 ELTGLPVAAVVEL----------ARLRGITIHPTLADRLTRHAGGNPRDVLAL 190 GLP AV L A L G I P + DR+ GNPR + AL Sbjct: 184 ---GLPELAVGRLNDCEAGELFDALLPG-PIDPRVRDRIVGETRGNPRALHAL 232 >tr|D3FED4|D3FED4_CONWI Tax_Id=469383 SubName: Full=Transcriptional regulator, LuxR family;[Conexibacter woesei] Length = 960 Score = 95.5 bits (236), Expect = 3e-17 Identities = 59/131 (45%), Positives = 74/131 (56%), Gaps = 2/131 (1%) Query: 754 EESLALLDGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARCD 813 EE++A L G LR + AR G L R G+RRD + A ++ L+ GA Sbjct: 829 EEAVATLAGSSLRTEEARARLDLGVALLRGGRRRDGRDALEQALEVALACGARGTARSAS 888 Query: 814 RELKAGGLHQLRGSRDSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRVYA 873 EL+ G R + D ELT E V A G +NRE+A EL+V+PKTV+ HLTRVYA Sbjct: 889 AELQVAGAPPRRLAFD--ELTASERRVAEHAAAGRTNREIAEELFVTPKTVENHLTRVYA 946 Query: 874 KLGVRSRAELA 884 KLGV SR ELA Sbjct: 947 KLGVGSRRELA 957 Score = 52.0 bits (123), Expect = 4e-04 Identities = 74/270 (27%), Positives = 108/270 (40%), Gaps = 58/270 (21%) Query: 1 MLCGRDRELSELGEHVAAAEH-TARLVVLTGEPGIGKTALLRDLTQRH-----GAWWALG 54 +L R EL + +A A +++ G+ GIGKT LLR +R A G Sbjct: 7 VLLERQDELRAIERQLAQARAGEGSALIVEGQAGIGKTTLLRAAIERAQTAGTSVLRARG 66 Query: 55 ASWETDLPGGVLAQLMQ----------------------------DDVP------DDPLD 80 E L GV+ QL++ ++P DP Sbjct: 67 GVLERHLEYGVVRQLLERPLVKAGAARRAELFAGPAAPAAAVLGLGELPVDAGPGHDPSA 126 Query: 81 GAAH----LVDHVRAAGVRLLLVDDAHHADVESLQALSTLVRHQRDLPVLVVLATQSVD- 135 G H L+ ++ AG L+++DDAH AD SL+ L R LPV ++L T+ + Sbjct: 127 GILHGLHWLIANLADAGSLLIVIDDAHWADAASLRTAGYLARRLDGLPVALLLGTRDDEP 186 Query: 136 -----ALPIPLAADDVVELTGLPV--AAVVELAR--LRGITIHPTLADRLTRHAGGNPRD 186 L L A + L P+ AAV ++ R G L T +GGNP Sbjct: 187 GSQAALLTELLHASEPAYLRPAPLAEAAVAQVLRDAFAGQQPSAPLVAACTHASGGNPFF 246 Query: 187 VLALFDEVPASAWARLDSSLPAPRHVVERV 216 + L E+ A+A A D P +VER+ Sbjct: 247 LTELATEL-AAAHATPDQLAP---DLVERI 272 >tr|C6WIN9|C6WIN9_ACTMD Tax_Id=446462 SubName: Full=Transcriptional regulator, LuxR family;[Actinosynnema mirum] Length = 894 Score = 95.1 bits (235), Expect = 4e-17 Identities = 54/132 (40%), Positives = 79/132 (59%), Gaps = 1/132 (0%) Query: 753 FEESLALLDGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARC 812 + +++ LL PL RAR + YG+ LRR G+RRDA A + +A +L + GA + R Sbjct: 750 YRDAVDLLARSPLVPYRARAHLLYGEWLRRKGRRRDAVAHLGSAHELLSASGAEGFARRA 809 Query: 813 DRELKAGGLH-QLRGSRDSVELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTRV 871 + EL+A G R D +LT QE AV LV G +++EVA +L+VS +TV HL + Sbjct: 810 ENELRAAGERVDRRAGADREKLTAQEVAVAGLVVGGATSQEVAVQLFVSKRTVDAHLRNI 869 Query: 872 YAKLGVRSRAEL 883 + KLG+ SR +L Sbjct: 870 FRKLGITSRRQL 881 Score = 72.8 bits (177), Expect = 2e-10 Identities = 85/263 (32%), Positives = 110/263 (41%), Gaps = 54/263 (20%) Query: 2 LCGRDRELSELGEHVAAA-EHTARLVVLTGEPGIGKTALL-RDLTQRHG--AWWALGASW 57 L GR REL+ + + AA E +VLTGEPG GK+ALL R L G A GA + Sbjct: 12 LVGRTRELAAISAVLGAAREGRGGALVLTGEPGAGKSALLDRALADATGFAVARATGAEF 71 Query: 58 ETDLPGGVLAQL------------------------MQDDVPDDPLDGAA--HLVDHVRA 91 E D P LAQL + + PD G A L+ Sbjct: 72 ERDFPYAGLAQLCVPLLPHLDRVSPHHREALGVAFGLAEGAPDPFRVGLATLELLTSTAR 131 Query: 92 AGVRLLLVDDAHHADVESLQALSTLVRHQRDLPVLVVLATQSVDALPIPLAADDVVELTG 151 A L LVDDAH D +S L+ L R PV V+ AT+ A D+ L G Sbjct: 132 ARPLLCLVDDAHWLDPDSTTVLTFLARRIAADPVAVLFATRP--------PATDLDRLPG 183 Query: 152 LPVAAV---VELARLRGITIHPTLADRLTRHAGGNPRDVLAL------FDEVPASAWARL 202 LPVA + A L + + +RL A GNP +L L PASA R+ Sbjct: 184 LPVAGLGDDAARALLGAFPLDERVRERLVAEARGNPLALLELPRAGGFAPPGPASASTRV 243 Query: 203 D-------SSLPAPRHVVERVAT 218 + +LPAP ++ A+ Sbjct: 244 ELGFRRRLDALPAPARLLLTTAS 266 >tr|A1T4E9|A1T4E9_MYCVP Tax_Id=350058 SubName: Full=Regulatory protein, LuxR;[Mycobacterium vanbaalenii] Length = 930 Score = 94.7 bits (234), Expect = 5e-17 Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 3/136 (2%) Query: 753 FEESLALLDGLPLRYDRARVNFAYGQTLRRAGKRRDADAVIATARDLYLSLGAHTYVARC 812 F E++A LD + AR YG+ LRR +R DA + A +++ GA Y R Sbjct: 792 FTEAIARLDQTRVAVHAARTRLCYGEWLRRRNRRPDARTQLGDAHEMFTRFGAQAYAERA 851 Query: 813 DRELKAGGLHQLRGSRDSV--ELTPQEDAVTALVAQGLSNREVAAELYVSPKTVQYHLTR 870 REL A G ++R D ELT QE + L A+G +N+E+ A+L++S T ++HL + Sbjct: 852 RRELTAAG-EKVRTQPDGTGGELTAQETQIARLAAEGFTNQEIGAQLFISAHTAEWHLRK 910 Query: 871 VYAKLGVRSRAELAAL 886 V+ KLG+ SR +L ++ Sbjct: 911 VFVKLGITSRRQLRSI 926 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.319 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 5,613,395,443 Number of extensions: 200027986 Number of successful extensions: 720911 Number of sequences better than 10.0: 10854 Number of HSP's gapped: 724139 Number of HSP's successfully gapped: 11124 Length of query: 888 Length of database: 4,236,830,644 Length adjustment: 147 Effective length of query: 741 Effective length of database: 2,398,174,636 Effective search space: 1777047405276 Effective search space used: 1777047405276 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 86 (37.7 bits)