BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSMEG_1914
         (219 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           12,507,864 sequences; 4,236,830,644 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|A0QTP2|A0QTP2_MYCS2 Tax_Id=246196 RecName: Full=RNA polymeras...   396   e-108
tr|Q9XCD8|Q9XCD8_MYCSM Tax_Id=1772 (sigH)RecName: Full=RNA polym...   390   e-107
tr|A4TFB2|A4TFB2_MYCGI Tax_Id=350054 RecName: Full=RNA polymeras...   367   e-100
tr|A1T600|A1T600_MYCVP Tax_Id=350058 RecName: Full=RNA polymeras...   366   1e-99
tr|Q1BC93|Q1BC93_MYCSS Tax_Id=164756 RecName: Full=RNA polymeras...   362   2e-98
tr|A3PWD8|A3PWD8_MYCSJ Tax_Id=164757 RecName: Full=RNA polymeras...   362   2e-98
tr|A1UCQ1|A1UCQ1_MYCSK Tax_Id=189918 RecName: Full=RNA polymeras...   362   2e-98
tr|B2HET6|B2HET6_MYCMM Tax_Id=216594 (sigH)RecName: Full=RNA pol...   354   5e-96
sp|P66807|RPOE_MYCTU Tax_Id=1773 (rpoE)RecName: Full=RNA polymer...   352   1e-95
sp|P66808|RPOE_MYCBO Tax_Id=1765 (rpoE)RecName: Full=RNA polymer...   352   1e-95
tr|C6DXG7|C6DXG7_MYCTK Tax_Id=478434 RecName: Full=RNA polymeras...   352   1e-95
tr|C1AGZ5|C1AGZ5_MYCBT Tax_Id=561275 (sigH_1)RecName: Full=RNA p...   352   1e-95
tr|A5WSD6|A5WSD6_MYCTF Tax_Id=336982 RecName: Full=RNA polymeras...   352   1e-95
tr|A5U7P6|A5U7P6_MYCTA Tax_Id=419947 (sigH)RecName: Full=RNA pol...   352   1e-95
tr|A1KNM4|A1KNM4_MYCBP Tax_Id=410289 (sigH_1)RecName: Full=RNA p...   352   1e-95
tr|D6G2M6|D6G2M6_MYCTU Tax_Id=478435 SubName: Full=Alternative R...   352   1e-95
tr|D6FLC8|D6FLC8_MYCTU Tax_Id=611303 SubName: Full=Alternative R...   352   1e-95
tr|D6F9L6|D6F9L6_MYCTU Tax_Id=611302 SubName: Full=RNA polymeras...   352   1e-95
tr|D5ZL99|D5ZL99_MYCTU Tax_Id=537210 SubName: Full=Alternative R...   352   1e-95
tr|D5Z867|D5Z867_MYCTU Tax_Id=537209 SubName: Full=Alternative R...   352   1e-95
tr|D5YWH4|D5YWH4_MYCTU Tax_Id=515616 SubName: Full=RNA polymeras...   352   1e-95
tr|D5YJI9|D5YJI9_MYCTU Tax_Id=520140 SubName: Full=RNA polymeras...   352   1e-95
tr|D5Y8F2|D5Y8F2_MYCTU Tax_Id=520141 SubName: Full=RNA polymeras...   352   1e-95
tr|D5XYP0|D5XYP0_MYCTU Tax_Id=515617 SubName: Full=Alternative R...   352   1e-95
tr|A4KLC3|A4KLC3_MYCTU Tax_Id=395095 RecName: Full=RNA polymeras...   352   1e-95
tr|A2VP22|A2VP22_MYCTU Tax_Id=348776 RecName: Full=RNA polymeras...   352   1e-95
tr|D6FQY9|D6FQY9_MYCTU Tax_Id=611304 SubName: Full=Alternative R...   351   3e-95
tr|A0PRB9|A0PRB9_MYCUA Tax_Id=362242 (sigH)RecName: Full=RNA pol...   351   4e-95
tr|Q73UP2|Q73UP2_MYCPA Tax_Id=1770 (sigH)RecName: Full=RNA polym...   348   2e-94
tr|A0QK79|A0QK79_MYCA1 Tax_Id=243243 RecName: Full=RNA polymeras...   348   2e-94
tr|D5PD62|D5PD62_9MYCO Tax_Id=525368 (sigH)SubName: Full=RNA pol...   344   4e-93
tr|B1MF13|B1MF13_MYCA9 Tax_Id=561007 RecName: Full=RNA polymeras...   330   9e-89
tr|Q0S2W8|Q0S2W8_RHOSR Tax_Id=101510 RecName: Full=RNA polymeras...   328   4e-88
tr|C1B1F4|C1B1F4_RHOOB Tax_Id=632772 (sigH)RecName: Full=RNA pol...   328   4e-88
tr|D5PQH2|D5PQH2_COREQ Tax_Id=525370 (sigH)SubName: Full=Protein...   324   5e-87
tr|C0ZX09|C0ZX09_RHOE4 Tax_Id=234621 (sigH)RecName: Full=RNA pol...   323   9e-87
tr|C3JG40|C3JG40_RHOER Tax_Id=596309 RecName: Full=RNA polymeras...   323   9e-87
tr|Q5YQV6|Q5YQV6_NOCFA Tax_Id=37329 RecName: Full=RNA polymerase...   320   7e-86
tr|D0LF23|D0LF23_GORB4 Tax_Id=526226 RecName: Full=RNA polymeras...   318   2e-85
tr|D5UVE9|D5UVE9_TSUPA Tax_Id=521096 SubName: Full=RNA polymeras...   317   8e-85
tr|A3RDV8|A3RDV8_RHOOP Tax_Id=37919 RecName: Full=RNA polymerase...   295   3e-78
tr|C6WJ20|C6WJ20_ACTMD Tax_Id=446462 RecName: Full=RNA polymeras...   293   7e-78
tr|C7MXX0|C7MXX0_SACVD Tax_Id=471857 SubName: Full=RNA polymeras...   291   3e-77
tr|D2SF99|D2SF99_GEOOG Tax_Id=526225 RecName: Full=RNA polymeras...   289   2e-76
tr|A4FNH5|A4FNH5_SACEN Tax_Id=405948 (sigR)RecName: Full=RNA pol...   289   2e-76

>tr|A0QTP2|A0QTP2_MYCS2 Tax_Id=246196 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium smegmatis]
          Length = 219

 Score =  396 bits (1017), Expect = e-108
 Identities = 202/219 (92%), Positives = 202/219 (92%)

Query: 1   MFPTMTXXXXXXXXXXXXXXXXXAELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQ 60
           MFPTMT                 AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQ
Sbjct: 1   MFPTMTDVDRVEPETPPEREETDAELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQ 60

Query: 61  ETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAE 120
           ETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAE
Sbjct: 61  ETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAE 120

Query: 121 HSSTGLRSAEVEALEALPDTEIKAALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGT 180
           HSSTGLRSAEVEALEALPDTEIKAALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGT
Sbjct: 121 HSSTGLRSAEVEALEALPDTEIKAALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGT 180

Query: 181 VMSRLHRGRRQLRDLLAGVARDRGFIRGPQLGEPEEVTS 219
           VMSRLHRGRRQLRDLLAGVARDRGFIRGPQLGEPEEVTS
Sbjct: 181 VMSRLHRGRRQLRDLLAGVARDRGFIRGPQLGEPEEVTS 219


>tr|Q9XCD8|Q9XCD8_MYCSM Tax_Id=1772 (sigH)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium smegmatis]
          Length = 215

 Score =  390 bits (1001), Expect = e-107
 Identities = 196/196 (100%), Positives = 196/196 (100%)

Query: 24  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL 83
           AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL
Sbjct: 20  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL 79

Query: 84  YRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 143
           YRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK
Sbjct: 80  YRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 139

Query: 144 AALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDR 203
           AALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDR
Sbjct: 140 AALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDR 199

Query: 204 GFIRGPQLGEPEEVTS 219
           GFIRGPQLGEPEEVTS
Sbjct: 200 GFIRGPQLGEPEEVTS 215


>tr|A4TFB2|A4TFB2_MYCGI Tax_Id=350054 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium gilvum]
          Length = 252

 Score =  367 bits (942), Expect = e-100
 Identities = 183/196 (93%), Positives = 191/196 (97%)

Query: 24  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL 83
           AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAY+GFRSFREGTNLKAWL
Sbjct: 57  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYSGFRSFREGTNLKAWL 116

Query: 84  YRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 143
           YRILTNTYINSYRKKQRQP+EYPT+EITDWQLA+NAEH+STGLRSAEVEALE LPD+EIK
Sbjct: 117 YRILTNTYINSYRKKQRQPAEYPTEEITDWQLAANAEHTSTGLRSAEVEALELLPDSEIK 176

Query: 144 AALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDR 203
            ALQALPE+FRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLR+LLAGVARDR
Sbjct: 177 EALQALPEDFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRELLAGVARDR 236

Query: 204 GFIRGPQLGEPEEVTS 219
           GFIRG QL  PEEVTS
Sbjct: 237 GFIRGEQLEAPEEVTS 252


>tr|A1T600|A1T600_MYCVP Tax_Id=350058 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium vanbaalenii]
          Length = 248

 Score =  366 bits (939), Expect = 1e-99
 Identities = 182/196 (92%), Positives = 190/196 (96%)

Query: 24  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL 83
           AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAY+GFRSFREGTNLKAWL
Sbjct: 53  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYSGFRSFREGTNLKAWL 112

Query: 84  YRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 143
           YRILTNTYINSYRKKQRQP+EYPT+EITDWQLA+NAEHSSTGLRSAEVEALE LPD EIK
Sbjct: 113 YRILTNTYINSYRKKQRQPAEYPTEEITDWQLAANAEHSSTGLRSAEVEALELLPDNEIK 172

Query: 144 AALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDR 203
            ALQALP+EFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR+LLAGVARDR
Sbjct: 173 EALQALPDEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRELLAGVARDR 232

Query: 204 GFIRGPQLGEPEEVTS 219
           GFIRG Q+  PEEVTS
Sbjct: 233 GFIRGEQVDAPEEVTS 248


>tr|Q1BC93|Q1BC93_MYCSS Tax_Id=164756 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium sp.]
          Length = 237

 Score =  362 bits (928), Expect = 2e-98
 Identities = 182/196 (92%), Positives = 191/196 (97%), Gaps = 2/196 (1%)

Query: 24  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL 83
           AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL
Sbjct: 44  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL 103

Query: 84  YRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 143
           YRILTNTYINSYRKKQRQPSEYPT+EITDWQLA+NAEHSSTGLRSAEVEALE+LPDTEIK
Sbjct: 104 YRILTNTYINSYRKKQRQPSEYPTEEITDWQLAANAEHSSTGLRSAEVEALESLPDTEIK 163

Query: 144 AALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDR 203
           AALQALPE+FRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGR+QLR+LLA VARDR
Sbjct: 164 AALQALPEDFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRKQLRELLADVARDR 223

Query: 204 GFIRGPQLGEPEEVTS 219
           GF+RG Q   PEEV+S
Sbjct: 224 GFLRGAQ--APEEVSS 237


>tr|A3PWD8|A3PWD8_MYCSJ Tax_Id=164757 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium sp.]
          Length = 237

 Score =  362 bits (928), Expect = 2e-98
 Identities = 182/196 (92%), Positives = 191/196 (97%), Gaps = 2/196 (1%)

Query: 24  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL 83
           AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL
Sbjct: 44  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL 103

Query: 84  YRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 143
           YRILTNTYINSYRKKQRQPSEYPT+EITDWQLA+NAEHSSTGLRSAEVEALE+LPDTEIK
Sbjct: 104 YRILTNTYINSYRKKQRQPSEYPTEEITDWQLAANAEHSSTGLRSAEVEALESLPDTEIK 163

Query: 144 AALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDR 203
           AALQALPE+FRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGR+QLR+LLA VARDR
Sbjct: 164 AALQALPEDFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRKQLRELLADVARDR 223

Query: 204 GFIRGPQLGEPEEVTS 219
           GF+RG Q   PEEV+S
Sbjct: 224 GFLRGAQ--APEEVSS 237


>tr|A1UCQ1|A1UCQ1_MYCSK Tax_Id=189918 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium sp.]
          Length = 237

 Score =  362 bits (928), Expect = 2e-98
 Identities = 182/196 (92%), Positives = 191/196 (97%), Gaps = 2/196 (1%)

Query: 24  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL 83
           AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL
Sbjct: 44  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL 103

Query: 84  YRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 143
           YRILTNTYINSYRKKQRQPSEYPT+EITDWQLA+NAEHSSTGLRSAEVEALE+LPDTEIK
Sbjct: 104 YRILTNTYINSYRKKQRQPSEYPTEEITDWQLAANAEHSSTGLRSAEVEALESLPDTEIK 163

Query: 144 AALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDR 203
           AALQALPE+FRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGR+QLR+LLA VARDR
Sbjct: 164 AALQALPEDFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRKQLRELLADVARDR 223

Query: 204 GFIRGPQLGEPEEVTS 219
           GF+RG Q   PEEV+S
Sbjct: 224 GFLRGAQ--APEEVSS 237


>tr|B2HET6|B2HET6_MYCMM Tax_Id=216594 (sigH)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium marinum]
          Length = 255

 Score =  354 bits (908), Expect = 5e-96
 Identities = 176/186 (94%), Positives = 182/186 (97%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           +LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY
Sbjct: 63  QLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 122

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 123 RILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VA++RG
Sbjct: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERG 242

Query: 205 FIRGPQ 210
           F+RG Q
Sbjct: 243 FVRGEQ 248


>sp|P66807|RPOE_MYCTU Tax_Id=1773 (rpoE)RecName: Full=RNA polymerase
           sigma-E factor; AltName: Full=Sigma-24;[Mycobacterium
           tuberculosis]
          Length = 216

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 24  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 83

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 84  RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 143

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 144 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 203

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 204 FARGEQAHE 212


>sp|P66808|RPOE_MYCBO Tax_Id=1765 (rpoE)RecName: Full=RNA polymerase
           sigma-E factor; AltName: Full=Sigma-24;[Mycobacterium
           bovis]
          Length = 216

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 24  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 83

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 84  RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 143

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 144 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 203

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 204 FARGEQAHE 212


>tr|C6DXG7|C6DXG7_MYCTK Tax_Id=478434 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis]
          Length = 255

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 63  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 122

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 123 RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 242

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 243 FARGEQAHE 251


>tr|C1AGZ5|C1AGZ5_MYCBT Tax_Id=561275 (sigH_1)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium bovis]
          Length = 216

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 24  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 83

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 84  RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 143

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 144 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 203

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 204 FARGEQAHE 212


>tr|A5WSD6|A5WSD6_MYCTF Tax_Id=336982 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis]
          Length = 255

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 63  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 122

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 123 RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 242

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 243 FARGEQAHE 251


>tr|A5U7P6|A5U7P6_MYCTA Tax_Id=419947 (sigH)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium tuberculosis]
          Length = 216

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 24  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 83

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 84  RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 143

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 144 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 203

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 204 FARGEQAHE 212


>tr|A1KNM4|A1KNM4_MYCBP Tax_Id=410289 (sigH_1)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium bovis]
          Length = 216

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 24  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 83

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 84  RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 143

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 144 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 203

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 204 FARGEQAHE 212


>tr|D6G2M6|D6G2M6_MYCTU Tax_Id=478435 SubName: Full=Alternative RNA
           polymerase sigma factor sigH;[Mycobacterium tuberculosis
           KZN 605]
          Length = 255

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 63  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 122

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 123 RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 242

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 243 FARGEQAHE 251


>tr|D6FLC8|D6FLC8_MYCTU Tax_Id=611303 SubName: Full=Alternative RNA
           polymerase sigma factor sigH;[Mycobacterium tuberculosis
           CPHL_A]
          Length = 216

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 24  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 83

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 84  RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 143

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 144 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 203

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 204 FARGEQAHE 212


>tr|D6F9L6|D6F9L6_MYCTU Tax_Id=611302 SubName: Full=RNA polymerase
           sigma-70 factor;[Mycobacterium tuberculosis T46]
          Length = 216

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 24  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 83

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 84  RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 143

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 144 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 203

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 204 FARGEQAHE 212


>tr|D5ZL99|D5ZL99_MYCTU Tax_Id=537210 SubName: Full=Alternative RNA
           polymerase sigma factor sigH;[Mycobacterium tuberculosis
           T17]
          Length = 216

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 24  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 83

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 84  RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 143

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 144 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 203

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 204 FARGEQAHE 212


>tr|D5Z867|D5Z867_MYCTU Tax_Id=537209 SubName: Full=Alternative RNA
           polymerase sigma-e factor (Sigma-24) sigH
           (RpoE);[Mycobacterium tuberculosis GM 1503]
          Length = 216

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 24  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 83

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 84  RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 143

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 144 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 203

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 204 FARGEQAHE 212


>tr|D5YWH4|D5YWH4_MYCTU Tax_Id=515616 SubName: Full=RNA polymerase
           sigma-70 factor;[Mycobacterium tuberculosis 02_1987]
          Length = 255

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 63  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 122

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 123 RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 242

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 243 FARGEQAHE 251


>tr|D5YJI9|D5YJI9_MYCTU Tax_Id=520140 SubName: Full=RNA polymerase
           sigma-70 factor;[Mycobacterium tuberculosis EAS054]
          Length = 216

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 24  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 83

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 84  RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 143

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 144 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 203

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 204 FARGEQAHE 212


>tr|D5Y8F2|D5Y8F2_MYCTU Tax_Id=520141 SubName: Full=RNA polymerase
           sigma-70 factor;[Mycobacterium tuberculosis T85]
          Length = 216

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 24  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 83

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 84  RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 143

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 144 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 203

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 204 FARGEQAHE 212


>tr|D5XYP0|D5XYP0_MYCTU Tax_Id=515617 SubName: Full=Alternative RNA
           polymerase sigma factor sigH;[Mycobacterium tuberculosis
           T92]
          Length = 255

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 63  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 122

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 123 RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 242

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 243 FARGEQAHE 251


>tr|A4KLC3|A4KLC3_MYCTU Tax_Id=395095 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis str. Haarlem]
          Length = 255

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 63  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 122

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 123 RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 242

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 243 FARGEQAHE 251


>tr|A2VP22|A2VP22_MYCTU Tax_Id=348776 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis C]
          Length = 255

 Score =  352 bits (904), Expect = 1e-95
 Identities = 177/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 63  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 122

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 123 RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 242

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 243 FARGEQAHE 251


>tr|D6FQY9|D6FQY9_MYCTU Tax_Id=611304 SubName: Full=Alternative RNA
           polymerase sigma factor sigH;[Mycobacterium tuberculosis
           K85]
          Length = 216

 Score =  351 bits (901), Expect = 3e-95
 Identities = 176/189 (93%), Positives = 181/189 (95%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWLY
Sbjct: 24  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLY 83

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 84  RILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 143

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPE+FRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARDRG
Sbjct: 144 ALQALPEDFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRG 203

Query: 205 FIRGPQLGE 213
           F RG Q  E
Sbjct: 204 FARGEQAHE 212


>tr|A0PRB9|A0PRB9_MYCUA Tax_Id=362242 (sigH)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium ulcerans]
          Length = 216

 Score =  351 bits (900), Expect = 4e-95
 Identities = 175/186 (94%), Positives = 181/186 (97%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           +LTA FERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY
Sbjct: 24  QLTACFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 83

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP+EYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 84  RILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 143

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VA++RG
Sbjct: 144 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERG 203

Query: 205 FIRGPQ 210
           F+RG Q
Sbjct: 204 FVRGEQ 209


>tr|Q73UP2|Q73UP2_MYCPA Tax_Id=1770 (sigH)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium paratuberculosis]
          Length = 268

 Score =  348 bits (894), Expect = 2e-94
 Identities = 178/196 (90%), Positives = 186/196 (94%), Gaps = 2/196 (1%)

Query: 24  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL 83
           AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWL
Sbjct: 75  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRAGTNLKAWL 134

Query: 84  YRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 143
           YRILTNTYINSYRKKQRQP+EYPT+EITDWQLASNAEHSSTGLRSAEVEALE+LPD+EIK
Sbjct: 135 YRILTNTYINSYRKKQRQPAEYPTEEITDWQLASNAEHSSTGLRSAEVEALESLPDSEIK 194

Query: 144 AALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDR 203
            ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VA++R
Sbjct: 195 DALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVAKER 254

Query: 204 GFIRGPQLGEPEEVTS 219
           GF RG Q    EEV+S
Sbjct: 255 GFNRGQQ--THEEVSS 268


>tr|A0QK79|A0QK79_MYCA1 Tax_Id=243243 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium avium]
          Length = 268

 Score =  348 bits (894), Expect = 2e-94
 Identities = 178/196 (90%), Positives = 186/196 (94%), Gaps = 2/196 (1%)

Query: 24  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL 83
           AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAWL
Sbjct: 75  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRAGTNLKAWL 134

Query: 84  YRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 143
           YRILTNTYINSYRKKQRQP+EYPT+EITDWQLASNAEHSSTGLRSAEVEALE+LPD+EIK
Sbjct: 135 YRILTNTYINSYRKKQRQPAEYPTEEITDWQLASNAEHSSTGLRSAEVEALESLPDSEIK 194

Query: 144 AALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDR 203
            ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VA++R
Sbjct: 195 DALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVAKER 254

Query: 204 GFIRGPQLGEPEEVTS 219
           GF RG Q    EEV+S
Sbjct: 255 GFNRGQQ--THEEVSS 268


>tr|D5PD62|D5PD62_9MYCO Tax_Id=525368 (sigH)SubName: Full=RNA
           polymerase sigma-70 factor;[Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 258

 Score =  344 bits (883), Expect = 4e-93
 Identities = 176/196 (89%), Positives = 184/196 (93%), Gaps = 2/196 (1%)

Query: 24  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL 83
           AEL ARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKA+AGFRSFR GTNLKAWL
Sbjct: 65  AELMARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAFAGFRSFRAGTNLKAWL 124

Query: 84  YRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 143
           YRILTNTYINSYRK+QRQP+EYPT+EITDWQLASNAEHSSTGLRSAEVEALEALPD EIK
Sbjct: 125 YRILTNTYINSYRKRQRQPAEYPTEEITDWQLASNAEHSSTGLRSAEVEALEALPDNEIK 184

Query: 144 AALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDR 203
            ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VA++R
Sbjct: 185 EALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVAKER 244

Query: 204 GFIRGPQLGEPEEVTS 219
           GF RG Q    EEV+S
Sbjct: 245 GFNRGHQ--AHEEVSS 258


>tr|B1MF13|B1MF13_MYCA9 Tax_Id=561007 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium abscessus]
          Length = 235

 Score =  330 bits (845), Expect = 9e-89
 Identities = 161/190 (84%), Positives = 176/190 (92%)

Query: 24  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL 83
           AE  ARFERDA+PLLDQLYG ALRMTRNPADAEDL+QETMVKAYAGF +F+EGTNLKAWL
Sbjct: 43  AERVARFERDALPLLDQLYGAALRMTRNPADAEDLVQETMVKAYAGFGTFKEGTNLKAWL 102

Query: 84  YRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 143
           YRILTNTYIN YRKKQRQP+EYPT+EITDWQLA+NAEH+STGLRSAE+EAL+ LPD EIK
Sbjct: 103 YRILTNTYINIYRKKQRQPAEYPTEEITDWQLAANAEHTSTGLRSAEIEALDGLPDDEIK 162

Query: 144 AALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDR 203
            AL  LPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLRDLL+ VA+DR
Sbjct: 163 EALNKLPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRDLLSEVAKDR 222

Query: 204 GFIRGPQLGE 213
           GF+R  +L E
Sbjct: 223 GFLRNNELAE 232


>tr|Q0S2W8|Q0S2W8_RHOSR Tax_Id=101510 RecName: Full=RNA polymerase
           sigma factor;[Rhodococcus sp.]
          Length = 219

 Score =  328 bits (840), Expect = 4e-88
 Identities = 163/184 (88%), Positives = 172/184 (93%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           EL ARFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKAY  FRSFREGTNLKAWLY
Sbjct: 17  ELIARFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKAYTAFRSFREGTNLKAWLY 76

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP++YPTDEITDWQLA+ AEHSSTGLRSAEVEAL+ALPD +IK 
Sbjct: 77  RILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHSSTGLRSAEVEALDALPDDDIKE 136

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLR LLA VAR+RG
Sbjct: 137 ALQALPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLLADVARERG 196

Query: 205 FIRG 208
           F RG
Sbjct: 197 FNRG 200


>tr|C1B1F4|C1B1F4_RHOOB Tax_Id=632772 (sigH)RecName: Full=RNA
           polymerase sigma factor;[Rhodococcus opacus]
          Length = 245

 Score =  328 bits (840), Expect = 4e-88
 Identities = 163/184 (88%), Positives = 172/184 (93%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           EL ARFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKAY  FRSFREGTNLKAWLY
Sbjct: 43  ELIARFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKAYTAFRSFREGTNLKAWLY 102

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP++YPTDEITDWQLA+ AEHSSTGLRSAEVEAL+ALPD +IK 
Sbjct: 103 RILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHSSTGLRSAEVEALDALPDDDIKE 162

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLR LLA VAR+RG
Sbjct: 163 ALQALPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLLADVARERG 222

Query: 205 FIRG 208
           F RG
Sbjct: 223 FNRG 226


>tr|D5PQH2|D5PQH2_COREQ Tax_Id=525370 (sigH)SubName: Full=Protein
           family RNA polymerase sigma-70 factor;[Rhodococcus equi
           ATCC 33707]
          Length = 271

 Score =  324 bits (830), Expect = 5e-87
 Identities = 160/184 (86%), Positives = 172/184 (93%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           +L  RFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKAY+ FRSF+EGTNLKAWLY
Sbjct: 68  QLIERFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKAYSAFRSFKEGTNLKAWLY 127

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP++YPTDEITDWQLA+ AEHSSTGLRSAEVEAL+ALPD +IKA
Sbjct: 128 RILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHSSTGLRSAEVEALDALPDDDIKA 187

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQ LPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLR LLA VAR+RG
Sbjct: 188 ALQELPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLLADVARERG 247

Query: 205 FIRG 208
           F RG
Sbjct: 248 FNRG 251


>tr|C0ZX09|C0ZX09_RHOE4 Tax_Id=234621 (sigH)RecName: Full=RNA
           polymerase sigma factor;[Rhodococcus erythropolis]
          Length = 232

 Score =  323 bits (828), Expect = 9e-87
 Identities = 160/183 (87%), Positives = 171/183 (93%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           EL ARFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKAY  FRSFR GTNLKAWLY
Sbjct: 31  ELIARFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKAYTAFRSFRAGTNLKAWLY 90

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP++YPTDEITDWQLA+ AEH+STGLRSAEVEAL+ALPD +IKA
Sbjct: 91  RILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHTSTGLRSAEVEALDALPDDDIKA 150

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQ+LPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLR LLA VA+DRG
Sbjct: 151 ALQSLPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLLADVAKDRG 210

Query: 205 FIR 207
           F R
Sbjct: 211 FNR 213


>tr|C3JG40|C3JG40_RHOER Tax_Id=596309 RecName: Full=RNA polymerase
           sigma factor;[Rhodococcus erythropolis SK121]
          Length = 232

 Score =  323 bits (828), Expect = 9e-87
 Identities = 160/183 (87%), Positives = 171/183 (93%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           EL ARFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKAY  FRSFR GTNLKAWLY
Sbjct: 31  ELIARFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKAYTAFRSFRAGTNLKAWLY 90

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYINSYRKKQRQP++YPTDEITDWQLA+ AEH+STGLRSAEVEAL+ALPD +IKA
Sbjct: 91  RILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHTSTGLRSAEVEALDALPDDDIKA 150

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQ+LPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLR LLA VA+DRG
Sbjct: 151 ALQSLPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLLADVAKDRG 210

Query: 205 FIR 207
           F R
Sbjct: 211 FNR 213


>tr|Q5YQV6|Q5YQV6_NOCFA Tax_Id=37329 RecName: Full=RNA polymerase
           sigma factor;[Nocardia farcinica]
          Length = 217

 Score =  320 bits (820), Expect = 7e-86
 Identities = 157/184 (85%), Positives = 172/184 (93%)

Query: 24  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL 83
           AEL  RFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKA+ GF+SF+EGTNL+AWL
Sbjct: 26  AELAQRFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKAFQGFKSFKEGTNLRAWL 85

Query: 84  YRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 143
           YRILTNTYINSYRKKQRQP++YPTDEITDWQLA+ AEH+STGLRSAEVEAL+ALPD +IK
Sbjct: 86  YRILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHTSTGLRSAEVEALDALPDDDIK 145

Query: 144 AALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDR 203
           AALQ LPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGR+QL+ LLA VAR+R
Sbjct: 146 AALQELPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLKGLLADVARER 205

Query: 204 GFIR 207
           GF R
Sbjct: 206 GFNR 209


>tr|D0LF23|D0LF23_GORB4 Tax_Id=526226 RecName: Full=RNA polymerase
           sigma factor;[Gordonia bronchialis]
          Length = 295

 Score =  318 bits (816), Expect = 2e-85
 Identities = 155/183 (84%), Positives = 170/183 (92%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           +LT RFERDA+PLLDQ+YG ALRMTRNP+DAEDL+QET VKA+  F SFREGTNLKAWLY
Sbjct: 96  QLTERFERDALPLLDQMYGAALRMTRNPSDAEDLVQETYVKAFTAFASFREGTNLKAWLY 155

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYIN YRKKQRQP++YPTDEITDWQLA+ AEH+STGLRSAE+EAL+ALPD EIKA
Sbjct: 156 RILTNTYINGYRKKQRQPAQYPTDEITDWQLAATAEHTSTGLRSAEIEALDALPDDEIKA 215

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQ LPEEFRMAVYYADVEG PYKEIAEIM+TPIGTVMSRLHRGRRQLR+LLA VAR+RG
Sbjct: 216 ALQELPEEFRMAVYYADVEGLPYKEIAEIMDTPIGTVMSRLHRGRRQLRELLADVARERG 275

Query: 205 FIR 207
           F R
Sbjct: 276 FNR 278


>tr|D5UVE9|D5UVE9_TSUPA Tax_Id=521096 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Tsukamurella
           paurometabola DSM 20162]
          Length = 226

 Score =  317 bits (811), Expect = 8e-85
 Identities = 155/183 (84%), Positives = 169/183 (92%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           +LTARFE +A+PLLDQLYG ALRMTRNPADAEDL+QET VKAY+ FRSFR+GTNLKAWLY
Sbjct: 28  QLTARFEAEALPLLDQLYGAALRMTRNPADAEDLVQETYVKAYSAFRSFRKGTNLKAWLY 87

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYIN YRKKQRQP++YPTDEITDWQLA+ AEHSSTGLRSAE+EAL+ALPD EIK 
Sbjct: 88  RILTNTYINGYRKKQRQPAQYPTDEITDWQLAATAEHSSTGLRSAEIEALDALPDDEIKQ 147

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           AL  LPE+FRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGRRQLR  L GVAR+RG
Sbjct: 148 ALAKLPEDFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRRQLRTELEGVARERG 207

Query: 205 FIR 207
           F+R
Sbjct: 208 FLR 210


>tr|A3RDV8|A3RDV8_RHOOP Tax_Id=37919 RecName: Full=RNA polymerase
           sigma factor; Flags: Fragment;[Rhodococcus opacus]
          Length = 169

 Score =  295 bits (755), Expect = 3e-78
 Identities = 148/168 (88%), Positives = 156/168 (92%)

Query: 41  LYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQR 100
           LYG ALRMTRNPADAEDL+QET VKAY  FRSFREGTNLKAWLYRILTNTYINSYRKKQR
Sbjct: 1   LYGAALRMTRNPADAEDLVQETYVKAYTAFRSFREGTNLKAWLYRILTNTYINSYRKKQR 60

Query: 101 QPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKAALQALPEEFRMAVYYA 160
           QP++YPTDEITD QLA+ AEHSSTGLRSAEVEAL+ALPD +IK ALQALPEEFRMAVYYA
Sbjct: 61  QPAQYPTDEITDRQLAATAEHSSTGLRSAEVEALDALPDDDIKEALQALPEEFRMAVYYA 120

Query: 161 DVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRGFIRG 208
           DVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLR LLA VAR+RGF RG
Sbjct: 121 DVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLLADVARERGFNRG 168


>tr|C6WJ20|C6WJ20_ACTMD Tax_Id=446462 RecName: Full=RNA polymerase
           sigma factor;[Actinosynnema mirum]
          Length = 219

 Score =  293 bits (751), Expect = 7e-78
 Identities = 144/183 (78%), Positives = 160/183 (87%)

Query: 28  ARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRIL 87
           ARFERDA+P+LDQLY  ALRMTRNPADAEDL+QET +KAYA F SF EGTNLKAWLYRIL
Sbjct: 31  ARFERDAMPMLDQLYSAALRMTRNPADAEDLVQETYLKAYAAFASFSEGTNLKAWLYRIL 90

Query: 88  TNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKAALQ 147
           TNTYIN YRKKQRQP + PTDEITDWQLA    H+S+GLRSAEVEA++ LPDT++K ALQ
Sbjct: 91  TNTYINGYRKKQRQPLQQPTDEITDWQLAQAESHTSSGLRSAEVEAMDRLPDTDVKEALQ 150

Query: 148 ALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRGFIR 207
            LPEEFR+AVY ADVEGF YKEIA+IM TPIGTVMSRLHRGRRQLR+ LA  AR+RGF+R
Sbjct: 151 RLPEEFRIAVYLADVEGFAYKEIADIMGTPIGTVMSRLHRGRRQLREQLADTARERGFLR 210

Query: 208 GPQ 210
           G Q
Sbjct: 211 GGQ 213


>tr|C7MXX0|C7MXX0_SACVD Tax_Id=471857 SubName: Full=RNA polymerase
           sigma-70 factor, TIGR02947 family;[Saccharomonospora
           viridis]
          Length = 216

 Score =  291 bits (746), Expect = 3e-77
 Identities = 143/189 (75%), Positives = 162/189 (85%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           EL  RFER+A+PL+DQLY  A+RMTRNPADAEDL+QET ++AYA F SF+EGTNLKAW+Y
Sbjct: 24  ELAERFEREAMPLVDQLYSAAMRMTRNPADAEDLVQETYLRAYAAFSSFKEGTNLKAWMY 83

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYIN YRK+QRQP + PT+EITDWQLA    H+S GLRSAEVEAL+ LPDT++KA
Sbjct: 84  RILTNTYINGYRKRQRQPVQQPTEEITDWQLAKAESHTSAGLRSAEVEALDKLPDTDVKA 143

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQ LPE+FR+AVY ADVEGF YKEIAEIM TPIGTVMSRLHRGR QLR LLA VAR+RG
Sbjct: 144 ALQQLPEDFRLAVYLADVEGFAYKEIAEIMNTPIGTVMSRLHRGRGQLRSLLADVARERG 203

Query: 205 FIRGPQLGE 213
           FIR  Q  E
Sbjct: 204 FIRSGQQRE 212


>tr|D2SF99|D2SF99_GEOOG Tax_Id=526225 RecName: Full=RNA polymerase
           sigma factor;[Geodermatophilus obscurus]
          Length = 249

 Score =  289 bits (739), Expect = 2e-76
 Identities = 142/184 (77%), Positives = 159/184 (86%)

Query: 24  AELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWL 83
           AE  ARFERDA+P LDQLY  ALRMTRNPADAEDL+QET VKAY+ F  F EGTNLKAWL
Sbjct: 56  AERDARFERDALPYLDQLYPAALRMTRNPADAEDLVQETFVKAYSAFHQFAEGTNLKAWL 115

Query: 84  YRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 143
           YRILTNTYINSYRKKQRQP +YPTD++ DWQL +  EHSS+GLRSAE+EAL+ LPD++IK
Sbjct: 116 YRILTNTYINSYRKKQRQPQQYPTDQVQDWQLYAAEEHSSSGLRSAEIEALDHLPDSDIK 175

Query: 144 AALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDR 203
            ALQ LPE+FR+AVY ADVEGF YKEIAEIM TPIGTVMSRLHRGRR L+ LLA  AR+R
Sbjct: 176 EALQQLPEDFRLAVYLADVEGFAYKEIAEIMGTPIGTVMSRLHRGRRGLQKLLADYARER 235

Query: 204 GFIR 207
           GF+R
Sbjct: 236 GFVR 239


>tr|A4FNH5|A4FNH5_SACEN Tax_Id=405948 (sigR)RecName: Full=RNA
           polymerase sigma factor;[Saccharopolyspora erythraea]
          Length = 229

 Score =  289 bits (739), Expect = 2e-76
 Identities = 142/183 (77%), Positives = 157/183 (85%)

Query: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84
           E  ARFERDA+PLLDQLYG ALRMTRN  DAEDL+QET +KAY+ F+SF +GTNLKAWLY
Sbjct: 38  ERAARFERDAMPLLDQLYGAALRMTRNAPDAEDLVQETYLKAYSAFKSFAQGTNLKAWLY 97

Query: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144
           RILTNTYIN YRK+QRQP + PTDEI DWQLA    H+S+GLRSAEVEAL+ LPDT++K 
Sbjct: 98  RILTNTYINGYRKRQRQPQQQPTDEIADWQLAQAENHTSSGLRSAEVEALDRLPDTDVKN 157

Query: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204
           ALQ L EEFRM VY ADVEGF YKEIAEIM TPIGTVMSRLHRGRRQLRD+L  VARDRG
Sbjct: 158 ALQQLAEEFRMVVYLADVEGFAYKEIAEIMGTPIGTVMSRLHRGRRQLRDMLTDVARDRG 217

Query: 205 FIR 207
           F+R
Sbjct: 218 FLR 220


  Database: Amellifera_nr
    Posted date:  Jul 23, 2010  5:10 AM
  Number of letters in database: 4,236,830,644
  Number of sequences in database:  12,507,864
  
Lambda     K      H
   0.317    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 12507864
Number of Hits to DB: 1,594,052,264
Number of extensions: 59945159
Number of successful extensions: 171379
Number of sequences better than 10.0: 9741
Number of HSP's gapped: 165920
Number of HSP's successfully gapped: 9748
Length of query: 219
Length of database: 4,236,830,644
Length adjustment: 133
Effective length of query: 86
Effective length of database: 2,573,284,732
Effective search space: 221302486952
Effective search space used: 221302486952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)