BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_2060 (442 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|A0QU33|NUOD_MYCS2 Tax_Id=246196 (nuoD)RecName: Full=NADH-quin... 802 0.0 sp|A1T6A3|NUOD_MYCVP Tax_Id=350058 (nuoD)RecName: Full=NADH-quin... 706 0.0 sp|Q1BBP6|NUOD_MYCSS Tax_Id=164756 (nuoD)RecName: Full=NADH-quin... 704 0.0 sp|A1UDA1|NUOD_MYCSK Tax_Id=189918 (nuoD)RecName: Full=NADH-quin... 704 0.0 sp|A3PWR8|NUOD_MYCSJ Tax_Id=164757 (nuoD)RecName: Full=NADH-quin... 704 0.0 sp|A4TDA8|NUOD_MYCGI Tax_Id=350054 (nuoD)RecName: Full=NADH-quin... 688 0.0 tr|D0LDB2|D0LDB2_GORB4 Tax_Id=526226 SubName: Full=NADH dehydrog... 673 0.0 sp|B1MPG7|NUOD_MYCA9 Tax_Id=561007 (nuoD)RecName: Full=NADH-quin... 669 0.0 tr|C3JKF2|C3JKF2_RHOER Tax_Id=596309 (nuoD)SubName: Full=NADH de... 664 0.0 tr|C0ZYJ7|C0ZYJ7_RHOE4 Tax_Id=234621 (nuoD)SubName: Full=NADH-qu... 662 0.0 sp|Q5YWD0|NUOD_NOCFA Tax_Id=37329 (nuoD)RecName: Full=NADH-quino... 655 0.0 sp|P65569|NUOD_MYCTU Tax_Id=1773 (nuoD)RecName: Full=NADH-quinon... 655 0.0 sp|A5U7G4|NUOD_MYCTA Tax_Id=419947 (nuoD)RecName: Full=NADH-quin... 655 0.0 sp|A1KNE4|NUOD_MYCBP Tax_Id=410289 (nuoD)RecName: Full=NADH-quin... 655 0.0 sp|P65570|NUOD_MYCBO Tax_Id=1765 (nuoD)RecName: Full=NADH-quinon... 655 0.0 tr|C6DX86|C6DX86_MYCTK Tax_Id=478434 SubName: Full=NADH dehydrog... 655 0.0 tr|C1AGR5|C1AGR5_MYCBT Tax_Id=561275 (nuoD)SubName: Full=NADH de... 655 0.0 tr|A5WS55|A5WS55_MYCTF Tax_Id=336982 SubName: Full=NADH dehydrog... 655 0.0 tr|D6G2E7|D6G2E7_MYCTU Tax_Id=478435 SubName: Full=NADH dehydrog... 655 0.0 tr|D6FQQ7|D6FQQ7_MYCTU Tax_Id=611304 SubName: Full=NADH dehydrog... 655 0.0 tr|D6FL46|D6FL46_MYCTU Tax_Id=611303 SubName: Full=NADH dehydrog... 655 0.0 tr|D6F9D0|D6F9D0_MYCTU Tax_Id=611302 SubName: Full=NADH dehydrog... 655 0.0 tr|D5ZL11|D5ZL11_MYCTU Tax_Id=537210 SubName: Full=NADH dehydrog... 655 0.0 tr|D5YW91|D5YW91_MYCTU Tax_Id=515616 SubName: Full=NADH-quinone ... 655 0.0 tr|D5YJB2|D5YJB2_MYCTU Tax_Id=520140 SubName: Full=NADH dehydrog... 655 0.0 tr|D5Y870|D5Y870_MYCTU Tax_Id=520141 SubName: Full=NADH dehydrog... 655 0.0 tr|A4KL46|A4KL46_MYCTU Tax_Id=395095 SubName: Full=NADH dehydrog... 655 0.0 tr|A2VNV3|A2VNV3_MYCTU Tax_Id=348776 SubName: Full=NADH dehydrog... 655 0.0 sp|Q73V12|NUOD_MYCPA Tax_Id=1770 (nuoD)RecName: Full=NADH-quinon... 655 0.0 sp|A0QJV0|NUOD_MYCA1 Tax_Id=243243 (nuoD)RecName: Full=NADH-quin... 655 0.0 tr|C1AYM6|C1AYM6_RHOOB Tax_Id=632772 (nuoD)SubName: Full=NADH-qu... 655 0.0 sp|Q0S447|NUOD_RHOSR Tax_Id=101510 (nuoD)RecName: Full=NADH-quin... 654 0.0 sp|B2HGE5|NUOD_MYCMM Tax_Id=216594 (nuoD)RecName: Full=NADH-quin... 654 0.0 tr|D5Z7Y8|D5Z7Y8_MYCTU Tax_Id=537209 SubName: Full=NADH dehydrog... 653 0.0 sp|A0PR41|NUOD_MYCUA Tax_Id=362242 (nuoD)RecName: Full=NADH-quin... 651 0.0 tr|D5PMU3|D5PMU3_COREQ Tax_Id=525370 (nuoD)SubName: Full=NADH-qu... 651 0.0 tr|D5PDN9|D5PDN9_9MYCO Tax_Id=525368 (nuoD)SubName: Full=NADH-qu... 640 0.0 tr|D6EFL7|D6EFL7_STRLI Tax_Id=457428 SubName: Full=NADH dehydrog... 603 e-170 sp|Q9XAQ7|NUOD2_STRCO Tax_Id=1902 (nuoD2)RecName: Full=NADH-quin... 601 e-170 tr|B4V2X3|B4V2X3_9ACTO Tax_Id=465541 SubName: Full=NADH dehydrog... 600 e-169 tr|D5UVH6|D5UVH6_TSUPA Tax_Id=521096 SubName: Full=NADH dehydrog... 600 e-169 sp|Q82DX8|NUOD1_STRAW Tax_Id=33903 (nuoD1)RecName: Full=NADH-qui... 597 e-168 tr|C9YXV9|C9YXV9_STRSW Tax_Id=680198 (nuoD)SubName: Full=NuoD, N... 597 e-168 tr|D6A4X5|D6A4X5_9ACTO Tax_Id=566461 SubName: Full=NuoD;[Strepto... 595 e-168 tr|B5HDM5|B5HDM5_STRPR Tax_Id=457429 SubName: Full=NuoD;[Strepto... 595 e-168 >sp|A0QU33|NUOD_MYCS2 Tax_Id=246196 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Mycobacterium smegmatis] Length = 442 Score = 802 bits (2071), Expect = 0.0 Identities = 399/442 (90%), Positives = 399/442 (90%) Query: 1 MSTSTVPPDGGEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXX 60 MSTSTVPPDGGEKVVVVGGNDWH IVVNMGPQHPSTHGV Sbjct: 1 MSTSTVPPDGGEKVVVVGGNDWHEVVAAARAGAAAQAGERIVVNMGPQHPSTHGVLRLIL 60 Query: 61 XXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLL 120 ARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLL Sbjct: 61 EIEGEIITEARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLL 120 Query: 121 GITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESI 180 GITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESI Sbjct: 121 GITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESI 180 Query: 181 TGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGY 240 TGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGY Sbjct: 181 TGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGY 240 Query: 241 LDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEM 300 LDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEM Sbjct: 241 LDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEM 300 Query: 301 HESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHH 360 HESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHH Sbjct: 301 HESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHH 360 Query: 361 FKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEG 420 FKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEG Sbjct: 361 FKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEG 420 Query: 421 GMXXXXXXXXXXXXPVMGGVDR 442 GM PVMGGVDR Sbjct: 421 GMVADAIAAVASIDPVMGGVDR 442 >sp|A1T6A3|NUOD_MYCVP Tax_Id=350058 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Mycobacterium vanbaalenii] Length = 442 Score = 706 bits (1822), Expect = 0.0 Identities = 350/445 (78%), Positives = 377/445 (84%), Gaps = 6/445 (1%) Query: 1 MSTSTVPPDGGEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXX 60 M+TS PP E+VVVVGG DW IVVNMGPQHPSTHGV Sbjct: 1 MTTSQQPP---ERVVVVGGQDWDQVVAAARQNAAEHAGERIVVNMGPQHPSTHGVLRLIL 57 Query: 61 XXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLL 120 ARCGIGYLHTGIEKNLE+RNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLL Sbjct: 58 EIEGEIIVEARCGIGYLHTGIEKNLEFRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLL 117 Query: 121 GITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESI 180 GITD IPERASVIRVM+MELNRISSHLVALATGGMELGAM+AMF GFRERE IL VFE+I Sbjct: 118 GITDAIPERASVIRVMMMELNRISSHLVALATGGMELGAMTAMFLGFRERELILSVFETI 177 Query: 181 TGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGY 240 TGLRMN+AYIRPGG+AADLPD+A+ QVR L+ +LPKRL+D+EDLLNENYIWKART G+GY Sbjct: 178 TGLRMNNAYIRPGGVAADLPDEALPQVRDLLTLLPKRLRDMEDLLNENYIWKARTQGIGY 237 Query: 241 LDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEM 300 LDLTGCMALGITGP+LRSTGLPHDLRKAQPYCGYE Y+FDV+TDD+CDSYGRY+IRVKEM Sbjct: 238 LDLTGCMALGITGPVLRSTGLPHDLRKAQPYCGYETYDFDVVTDDQCDSYGRYLIRVKEM 297 Query: 301 HESVKIVEQCLARLK---PGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGL 357 H+S++IVEQC+ RL+ PVMI+DKKLAWPADLK+GPDGLGNSPEHIAKIMG SMEGL Sbjct: 298 HQSIRIVEQCVQRLERSVGAPVMITDKKLAWPADLKVGPDGLGNSPEHIAKIMGHSMEGL 357 Query: 358 IHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAT 417 IHHFKLVTEGIRVP GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAA Sbjct: 358 IHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAM 417 Query: 418 CEGGMXXXXXXXXXXXXPVMGGVDR 442 CEGGM PVMGGVDR Sbjct: 418 CEGGMVADAITAVASIDPVMGGVDR 442 >sp|Q1BBP6|NUOD_MYCSS Tax_Id=164756 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Mycobacterium sp.] Length = 446 Score = 704 bits (1818), Expect = 0.0 Identities = 349/449 (77%), Positives = 374/449 (83%), Gaps = 10/449 (2%) Query: 1 MSTSTVPPDGG-------EKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTH 53 M+T PP+ G + V+VVGG DW IVVNMGPQHPSTH Sbjct: 1 MTTPPGPPNAGGDARTGTDTVIVVGGEDWEQVVAAAEQAQAGER---IVVNMGPQHPSTH 57 Query: 54 GVXXXXXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYC 113 GV ARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYC Sbjct: 58 GVLRLILEIEGETITEARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYC 117 Query: 114 LGVEKLLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEI 173 LGVEKLLG+TD IPER +VIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEI Sbjct: 118 LGVEKLLGVTDAIPERVNVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEI 177 Query: 174 LRVFESITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKA 233 L VFE ITGLRMNHAYIRPGGLAADLPD A+ ++R L+ +LP RL+DLE+LLNENYIWKA Sbjct: 178 LSVFEMITGLRMNHAYIRPGGLAADLPDGAVPRIRELLALLPGRLRDLENLLNENYIWKA 237 Query: 234 RTVGVGYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRY 293 RT G+GYLDL GCMALGITGP+LRSTGLPHDLR+AQPYCGYE+YEFDVITDD CD+YGRY Sbjct: 238 RTQGIGYLDLAGCMALGITGPVLRSTGLPHDLRRAQPYCGYEDYEFDVITDDGCDAYGRY 297 Query: 294 IIRVKEMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRS 353 +IRVKEM ES+KIVEQC+ RLKPGPVMI+DKKLAWPADL+LGPDGLGNSP HIA+IMG+S Sbjct: 298 LIRVKEMRESLKIVEQCVDRLKPGPVMIADKKLAWPADLELGPDGLGNSPAHIARIMGQS 357 Query: 354 MEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQA 413 MEGLIHHFKLVTEGIRVP GQVY AVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQA Sbjct: 358 MEGLIHHFKLVTEGIRVPAGQVYTAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQA 417 Query: 414 VAATCEGGMXXXXXXXXXXXXPVMGGVDR 442 VAA CEGGM PVMGGVDR Sbjct: 418 VAAMCEGGMVADAISAVASIDPVMGGVDR 446 >sp|A1UDA1|NUOD_MYCSK Tax_Id=189918 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Mycobacterium sp.] Length = 446 Score = 704 bits (1818), Expect = 0.0 Identities = 349/449 (77%), Positives = 374/449 (83%), Gaps = 10/449 (2%) Query: 1 MSTSTVPPDGG-------EKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTH 53 M+T PP+ G + V+VVGG DW IVVNMGPQHPSTH Sbjct: 1 MTTPPGPPNAGGDARTGTDTVIVVGGEDWEQVVAAAEQAQAGER---IVVNMGPQHPSTH 57 Query: 54 GVXXXXXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYC 113 GV ARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYC Sbjct: 58 GVLRLILEIEGETITEARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYC 117 Query: 114 LGVEKLLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEI 173 LGVEKLLG+TD IPER +VIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEI Sbjct: 118 LGVEKLLGVTDAIPERVNVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEI 177 Query: 174 LRVFESITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKA 233 L VFE ITGLRMNHAYIRPGGLAADLPD A+ ++R L+ +LP RL+DLE+LLNENYIWKA Sbjct: 178 LSVFEMITGLRMNHAYIRPGGLAADLPDGAVPRIRELLALLPGRLRDLENLLNENYIWKA 237 Query: 234 RTVGVGYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRY 293 RT G+GYLDL GCMALGITGP+LRSTGLPHDLR+AQPYCGYE+YEFDVITDD CD+YGRY Sbjct: 238 RTQGIGYLDLAGCMALGITGPVLRSTGLPHDLRRAQPYCGYEDYEFDVITDDGCDAYGRY 297 Query: 294 IIRVKEMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRS 353 +IRVKEM ES+KIVEQC+ RLKPGPVMI+DKKLAWPADL+LGPDGLGNSP HIA+IMG+S Sbjct: 298 LIRVKEMRESLKIVEQCVDRLKPGPVMIADKKLAWPADLELGPDGLGNSPAHIARIMGQS 357 Query: 354 MEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQA 413 MEGLIHHFKLVTEGIRVP GQVY AVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQA Sbjct: 358 MEGLIHHFKLVTEGIRVPAGQVYTAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQA 417 Query: 414 VAATCEGGMXXXXXXXXXXXXPVMGGVDR 442 VAA CEGGM PVMGGVDR Sbjct: 418 VAAMCEGGMVADAISAVASIDPVMGGVDR 446 >sp|A3PWR8|NUOD_MYCSJ Tax_Id=164757 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Mycobacterium sp.] Length = 446 Score = 704 bits (1818), Expect = 0.0 Identities = 349/449 (77%), Positives = 374/449 (83%), Gaps = 10/449 (2%) Query: 1 MSTSTVPPDGG-------EKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTH 53 M+T PP+ G + V+VVGG DW IVVNMGPQHPSTH Sbjct: 1 MTTPPGPPNAGGDARTGTDTVIVVGGEDWEQVVAAAEQAQAGER---IVVNMGPQHPSTH 57 Query: 54 GVXXXXXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYC 113 GV ARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYC Sbjct: 58 GVLRLILEIEGETITEARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYC 117 Query: 114 LGVEKLLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEI 173 LGVEKLLG+TD IPER +VIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEI Sbjct: 118 LGVEKLLGVTDAIPERVNVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEI 177 Query: 174 LRVFESITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKA 233 L VFE ITGLRMNHAYIRPGGLAADLPD A+ ++R L+ +LP RL+DLE+LLNENYIWKA Sbjct: 178 LSVFEMITGLRMNHAYIRPGGLAADLPDGAVPRIRELLALLPGRLRDLENLLNENYIWKA 237 Query: 234 RTVGVGYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRY 293 RT G+GYLDL GCMALGITGP+LRSTGLPHDLR+AQPYCGYE+YEFDVITDD CD+YGRY Sbjct: 238 RTQGIGYLDLAGCMALGITGPVLRSTGLPHDLRRAQPYCGYEDYEFDVITDDGCDAYGRY 297 Query: 294 IIRVKEMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRS 353 +IRVKEM ES+KIVEQC+ RLKPGPVMI+DKKLAWPADL+LGPDGLGNSP HIA+IMG+S Sbjct: 298 LIRVKEMRESLKIVEQCVDRLKPGPVMIADKKLAWPADLELGPDGLGNSPAHIARIMGQS 357 Query: 354 MEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQA 413 MEGLIHHFKLVTEGIRVP GQVY AVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQA Sbjct: 358 MEGLIHHFKLVTEGIRVPAGQVYTAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQA 417 Query: 414 VAATCEGGMXXXXXXXXXXXXPVMGGVDR 442 VAA CEGGM PVMGGVDR Sbjct: 418 VAAMCEGGMVADAISAVASIDPVMGGVDR 446 >sp|A4TDA8|NUOD_MYCGI Tax_Id=350054 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Mycobacterium gilvum] Length = 451 Score = 688 bits (1775), Expect = 0.0 Identities = 343/454 (75%), Positives = 374/454 (82%), Gaps = 15/454 (3%) Query: 1 MSTSTVPPDGGEKVVVVGGNDWHXXXXXXXXXXXXXXXXX---------IVVNMGPQHPS 51 M+TS P E+V+VVGG DW IVVNMGPQHPS Sbjct: 1 MTTSAQRP---ERVIVVGGQDWDQVVTAARQMSNSSSRAGDAAEHAGERIVVNMGPQHPS 57 Query: 52 THGVXXXXXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETA 111 THGV ARCGIGYLHTGIEKNLE+R WTQGVTFVTRMDYLSPFFNETA Sbjct: 58 THGVLRLILEIEGETIVEARCGIGYLHTGIEKNLEFRTWTQGVTFVTRMDYLSPFFNETA 117 Query: 112 YCLGVEKLLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFRERE 171 YCLGVEKLLG+TDDIPERASVIRVM+MELNRISSHLVALATGGMELGAM+AMF GFRERE Sbjct: 118 YCLGVEKLLGVTDDIPERASVIRVMMMELNRISSHLVALATGGMELGAMTAMFLGFRERE 177 Query: 172 EILRVFESITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIW 231 IL VFE+ITGLRMN AYIRPGG+AADLP++ + Q+R L+ +LP RL+D+E+LLNENYIW Sbjct: 178 LILSVFETITGLRMNSAYIRPGGVAADLPEEGLPQIRELLTLLPTRLRDMENLLNENYIW 237 Query: 232 KARTVGVGYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYG 291 KART+GVGYLDLTGCMALGITGP+LRSTGLPHDLRK+QPYCGY+ Y+FDVITDDRCDSYG Sbjct: 238 KARTLGVGYLDLTGCMALGITGPVLRSTGLPHDLRKSQPYCGYQTYDFDVITDDRCDSYG 297 Query: 292 RYIIRVKEMHESVKIVEQCLARLKPG---PVMISDKKLAWPADLKLGPDGLGNSPEHIAK 348 RY+IRVKEM ES++IVEQC+ RL+ PVMI+D+KLAWPADLK+GPDGLGNSPEHIAK Sbjct: 298 RYLIRVKEMRESLRIVEQCVERLERSTGEPVMITDRKLAWPADLKVGPDGLGNSPEHIAK 357 Query: 349 IMGRSMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSF 408 IMG SMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSF Sbjct: 358 IMGHSMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSF 417 Query: 409 TNLQAVAATCEGGMXXXXXXXXXXXXPVMGGVDR 442 TNLQAVAA CEGGM PVMGGVDR Sbjct: 418 TNLQAVAAMCEGGMVADAITAVASIDPVMGGVDR 451 >tr|D0LDB2|D0LDB2_GORB4 Tax_Id=526226 SubName: Full=NADH dehydrogenase I, D subunit; EC=1.6.99.5;[Gordonia bronchialis] Length = 446 Score = 673 bits (1737), Expect = 0.0 Identities = 331/442 (74%), Positives = 359/442 (81%), Gaps = 1/442 (0%) Query: 2 STSTVPPDGGEKVVVVGGNDWHXXXXXXXXXXXXXXXXX-IVVNMGPQHPSTHGVXXXXX 60 +T P + V G DW IVVNMGPQHPSTHGV Sbjct: 5 TTGHAPGPKATRTYTVTGQDWEQIVSDVRTRAEQQPGDERIVVNMGPQHPSTHGVLRLIL 64 Query: 61 XXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLL 120 ARCGIGYLHTGIEKNLE+RNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLL Sbjct: 65 EIEGETVTEARCGIGYLHTGIEKNLEFRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLL 124 Query: 121 GITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESI 180 GITDDIPERA+VIRVM+MELNRI+SHLVALATGGMELGA++AMF GFRERE IL +FE I Sbjct: 125 GITDDIPERATVIRVMMMELNRITSHLVALATGGMELGAVTAMFLGFREREMILDLFELI 184 Query: 181 TGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGY 240 TGLRMNHAYIRPGG+A DLP D + +V ++EILP RL +L DLLN+NYIWKART GVGY Sbjct: 185 TGLRMNHAYIRPGGVAQDLPSDGVDKVAEVLEILPGRLDELGDLLNDNYIWKARTQGVGY 244 Query: 241 LDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEM 300 LDLTGCMALGITGP+LRSTGLPHDLRK+QPYCGYENY+FDVITD CDSYGRY+IRVKEM Sbjct: 245 LDLTGCMALGITGPVLRSTGLPHDLRKSQPYCGYENYDFDVITDTTCDSYGRYLIRVKEM 304 Query: 301 HESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHH 360 ES+KIV QCL RL+PGPVM++D+K+AWPADL LGPDGLGNSPEHIA+IMG SME LIHH Sbjct: 305 RESIKIVRQCLERLRPGPVMVADRKIAWPADLALGPDGLGNSPEHIARIMGTSMEALIHH 364 Query: 361 FKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEG 420 FKLVTEG+RVP GQ YVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAA CEG Sbjct: 365 FKLVTEGMRVPAGQCYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMCEG 424 Query: 421 GMXXXXXXXXXXXXPVMGGVDR 442 GM PVMGGVDR Sbjct: 425 GMVADVITAVASIDPVMGGVDR 446 >sp|B1MPG7|NUOD_MYCA9 Tax_Id=561007 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Mycobacterium abscessus] Length = 432 Score = 669 bits (1726), Expect = 0.0 Identities = 324/428 (75%), Positives = 357/428 (83%), Gaps = 4/428 (0%) Query: 15 VVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXARCGI 74 ++ GG DW IVVNMGPQHPSTHGV RCGI Sbjct: 9 LMAGGQDWDEIVTAAGQATDER----IVVNMGPQHPSTHGVLRLILEIEGETVTDVRCGI 64 Query: 75 GYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERASVIR 134 GYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVE+LLGI D+IPERA+VIR Sbjct: 65 GYLHTGIEKNLEYRTWTQGVTFVTRMDYLSPFFNETAYCLGVEQLLGIADEIPERANVIR 124 Query: 135 VMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYIRPGG 194 V++MELNRISSHLVALATGGMELGAM+AMF GFRERE IL+VFE+ITGLRMNHAY+RPGG Sbjct: 125 VLMMELNRISSHLVALATGGMELGAMTAMFLGFREREMILKVFEAITGLRMNHAYVRPGG 184 Query: 195 LAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALGITGP 254 LA DLPD A +VR L+EILP RL+D+E+LLNENYIWKART GVGYLDLTGCMALGITGP Sbjct: 185 LAQDLPDGAEQEVRDLLEILPGRLRDMENLLNENYIWKARTQGVGYLDLTGCMALGITGP 244 Query: 255 ILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQCLARL 314 +LR+TGL HDLR+AQPYCGYENY+FDV+T CDSYGRY+IRVKEMHES+KI +QC+ RL Sbjct: 245 VLRATGLAHDLRRAQPYCGYENYDFDVVTHQDCDSYGRYLIRVKEMHESIKIAQQCVDRL 304 Query: 315 KPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRVPPGQ 374 +PGPVM+ DKK+AWPADL GPDGLGNSP+HIAKIMG SMEGLIHHFKLVTEG+RVP GQ Sbjct: 305 RPGPVMVDDKKIAWPADLASGPDGLGNSPKHIAKIMGTSMEGLIHHFKLVTEGVRVPAGQ 364 Query: 375 VYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXXXXXX 434 VYVA+ESPRGELGVHMVSDGGTRPYRVH+RDPSFTNLQ+VAA CEG M Sbjct: 365 VYVAIESPRGELGVHMVSDGGTRPYRVHFRDPSFTNLQSVAAMCEGAMVADLIAAVASID 424 Query: 435 PVMGGVDR 442 PVMGGVDR Sbjct: 425 PVMGGVDR 432 >tr|C3JKF2|C3JKF2_RHOER Tax_Id=596309 (nuoD)SubName: Full=NADH dehydrogenase, d subunit; EC=1.6.99.5;[Rhodococcus erythropolis SK121] Length = 443 Score = 664 bits (1713), Expect = 0.0 Identities = 325/431 (75%), Positives = 358/431 (83%), Gaps = 1/431 (0%) Query: 12 EKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXAR 71 E VV G DW IVVNMGPQHPSTHGV AR Sbjct: 14 ETVVTASGQDWDDIVTAAARQRTGEAER-IVVNMGPQHPSTHGVLRLILEIEGETVVEAR 72 Query: 72 CGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERAS 131 CGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLL ITDDIPERA+ Sbjct: 73 CGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLDITDDIPERAT 132 Query: 132 VIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYIR 191 VIRVM+MELNRISSHLVALATGGMELGA++AM +GFRERE IL VFE+ITGLRMNHAYIR Sbjct: 133 VIRVMMMELNRISSHLVALATGGMELGAVTAMLFGFRERELILDVFETITGLRMNHAYIR 192 Query: 192 PGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALGI 251 PGGLA DLPD ++ +VR L+++LPKRL+D+E +L++N IWKART G+GYLDLTGCMALG+ Sbjct: 193 PGGLAQDLPDGSVAKVRELLKVLPKRLRDVELMLSDNSIWKARTQGIGYLDLTGCMALGV 252 Query: 252 TGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQCL 311 TGP+LR+TGLPHD R+AQPYCGYENYEFDV+T D D YGRY+IRV+EM ES+KIVEQCL Sbjct: 253 TGPVLRATGLPHDQRRAQPYCGYENYEFDVVTHDGSDCYGRYVIRVEEMKESLKIVEQCL 312 Query: 312 ARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRVP 371 +L+PGPVM+ DKK+AWPADL +GPDGLGNS +HIAKIM SMEGLIHHFKLVTEGIRVP Sbjct: 313 DKLQPGPVMVDDKKIAWPADLAVGPDGLGNSQKHIAKIMESSMEGLIHHFKLVTEGIRVP 372 Query: 372 PGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXXX 431 PGQVYVAVESPRGELGVHMVSDGGTRPYRVH+RDPSFTNLQAVAA CEGGM Sbjct: 373 PGQVYVAVESPRGELGVHMVSDGGTRPYRVHFRDPSFTNLQAVAAMCEGGMVSDVIASVA 432 Query: 432 XXXPVMGGVDR 442 PVMGGVDR Sbjct: 433 SIDPVMGGVDR 443 >tr|C0ZYJ7|C0ZYJ7_RHOE4 Tax_Id=234621 (nuoD)SubName: Full=NADH-quinone oxidoreductase chain D; EC=1.6.99.5;[Rhodococcus erythropolis] Length = 443 Score = 662 bits (1709), Expect = 0.0 Identities = 324/431 (75%), Positives = 358/431 (83%), Gaps = 1/431 (0%) Query: 12 EKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXAR 71 E VV G DW IVVNMGPQHPSTHGV AR Sbjct: 14 ETVVTASGQDWDDIVTAAARQRTGEAER-IVVNMGPQHPSTHGVLRLILEIEGETVVEAR 72 Query: 72 CGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERAS 131 CGIGYLHTGIEKNLE+RNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLL ITDDIPERA+ Sbjct: 73 CGIGYLHTGIEKNLEFRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLDITDDIPERAT 132 Query: 132 VIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYIR 191 VIRVM+MELNRISSHLVALATGGMELGA++AM +GFRERE IL VFE+ITGLRMNHAYIR Sbjct: 133 VIRVMMMELNRISSHLVALATGGMELGAVTAMLFGFRERELILDVFETITGLRMNHAYIR 192 Query: 192 PGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALGI 251 PGGLA DLPD ++ +VR L+++LPKRL+D+E +L++N IWKART G+GYLDLTGCMALG+ Sbjct: 193 PGGLAQDLPDGSVAKVRELLKVLPKRLRDVELMLSDNSIWKARTQGIGYLDLTGCMALGV 252 Query: 252 TGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQCL 311 TGP+LR+TGLPHD R+AQPYCGYENYEFDV+T D D YGRY+IRV+EM ES+KIVEQCL Sbjct: 253 TGPVLRATGLPHDQRRAQPYCGYENYEFDVVTHDGSDCYGRYVIRVEEMKESLKIVEQCL 312 Query: 312 ARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRVP 371 +L+PGPVM+ DKK+AWPADL +GPDGLGNS +HIAKIM SMEGLIHHFKLVTEGIRVP Sbjct: 313 DKLQPGPVMVDDKKIAWPADLAVGPDGLGNSQKHIAKIMESSMEGLIHHFKLVTEGIRVP 372 Query: 372 PGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXXX 431 PGQVYVAVESPRGELGVHMVSDGGTRPYRVH+RDPSFTNLQAVAA CEGGM Sbjct: 373 PGQVYVAVESPRGELGVHMVSDGGTRPYRVHFRDPSFTNLQAVAAMCEGGMVSDVIASVA 432 Query: 432 XXXPVMGGVDR 442 PVMGGVDR Sbjct: 433 SIDPVMGGVDR 443 >sp|Q5YWD0|NUOD_NOCFA Tax_Id=37329 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Nocardia farcinica] Length = 453 Score = 655 bits (1691), Expect = 0.0 Identities = 323/436 (74%), Positives = 352/436 (80%), Gaps = 4/436 (0%) Query: 7 PPDGGEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXX 66 P G+ VV V G DW IVVNMGPQHPSTHGV Sbjct: 22 PDTTGDTVVTVSGQDWDTVTETLGGAREER----IVVNMGPQHPSTHGVLRLILEIEGET 77 Query: 67 XXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDI 126 ARCGIGYLHTGIEKNLEYR W QGVTFVTRMDYLSPF+NETAYCLGVE+LLGIT+ I Sbjct: 78 VVEARCGIGYLHTGIEKNLEYRTWMQGVTFVTRMDYLSPFYNETAYCLGVERLLGITEQI 137 Query: 127 PERASVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMN 186 PERAS++RV+LMELNRISSHLV LATGGMELGA++ M +GFRERE IL VFE+ITGLRMN Sbjct: 138 PERASIVRVLLMELNRISSHLVCLATGGMELGALTPMLFGFRERELILDVFETITGLRMN 197 Query: 187 HAYIRPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGC 246 HAYIRPGGLA DLPDD + +VR L++++PKRL+D+E LL +N I+KART +GYLDLTGC Sbjct: 198 HAYIRPGGLAQDLPDDGVAKVRELLDLMPKRLRDMEHLLTQNPIFKARTQDIGYLDLTGC 257 Query: 247 MALGITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKI 306 MALGITGP+LRS GLPHDLRK+QPYCGYE YEFDV T CD YGRY+IRV+EM ES+KI Sbjct: 258 MALGITGPVLRSAGLPHDLRKSQPYCGYETYEFDVPTTTGCDCYGRYLIRVEEMKESLKI 317 Query: 307 VEQCLARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTE 366 VEQCL RL+PGPVMI DKKLAWPADLKLG DGLGNSP HI +IMG SMEGLIHHFKLVTE Sbjct: 318 VEQCLDRLRPGPVMIEDKKLAWPADLKLGADGLGNSPAHIGRIMGSSMEGLIHHFKLVTE 377 Query: 367 GIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXX 426 GIRVP GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAA CEGGM Sbjct: 378 GIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMCEGGMVADV 437 Query: 427 XXXXXXXXPVMGGVDR 442 PVMGGVDR Sbjct: 438 IAAVASIDPVMGGVDR 453 >sp|P65569|NUOD_MYCTU Tax_Id=1773 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Mycobacterium tuberculosis] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >sp|A5U7G4|NUOD_MYCTA Tax_Id=419947 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Mycobacterium tuberculosis] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >sp|A1KNE4|NUOD_MYCBP Tax_Id=410289 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Mycobacterium bovis] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >sp|P65570|NUOD_MYCBO Tax_Id=1765 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Mycobacterium bovis] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >tr|C6DX86|C6DX86_MYCTK Tax_Id=478434 SubName: Full=NADH dehydrogenase subunit I D nuoD;[Mycobacterium tuberculosis] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >tr|C1AGR5|C1AGR5_MYCBT Tax_Id=561275 (nuoD)SubName: Full=NADH dehydrogenase subunit D; EC=1.6.5.3;[Mycobacterium bovis] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >tr|A5WS55|A5WS55_MYCTF Tax_Id=336982 SubName: Full=NADH dehydrogenase I chain D nuoD (NADH-ubiquinone oxidoreductase chain D);[Mycobacterium tuberculosis] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >tr|D6G2E7|D6G2E7_MYCTU Tax_Id=478435 SubName: Full=NADH dehydrogenase subunit I D nuoD;[Mycobacterium tuberculosis KZN 605] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >tr|D6FQQ7|D6FQQ7_MYCTU Tax_Id=611304 SubName: Full=NADH dehydrogenase subunit I D nuoD;[Mycobacterium tuberculosis K85] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >tr|D6FL46|D6FL46_MYCTU Tax_Id=611303 SubName: Full=NADH dehydrogenase subunit I D nuoD;[Mycobacterium tuberculosis CPHL_A] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >tr|D6F9D0|D6F9D0_MYCTU Tax_Id=611302 SubName: Full=NADH dehydrogenase (Quinone), D subunit;[Mycobacterium tuberculosis T46] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >tr|D5ZL11|D5ZL11_MYCTU Tax_Id=537210 SubName: Full=NADH dehydrogenase subunit I D nuoD;[Mycobacterium tuberculosis T17] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >tr|D5YW91|D5YW91_MYCTU Tax_Id=515616 SubName: Full=NADH-quinone oxidoreductase subunit D;[Mycobacterium tuberculosis 02_1987] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >tr|D5YJB2|D5YJB2_MYCTU Tax_Id=520140 SubName: Full=NADH dehydrogenase subunit delta;[Mycobacterium tuberculosis EAS054] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >tr|D5Y870|D5Y870_MYCTU Tax_Id=520141 SubName: Full=NADH dehydrogenase subunit D;[Mycobacterium tuberculosis T85] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >tr|A4KL46|A4KL46_MYCTU Tax_Id=395095 SubName: Full=NADH dehydrogenase I (Chain D) nuoD (NADH-ubiquinone oxidoreductase chain D);[Mycobacterium tuberculosis str. Haarlem] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >tr|A2VNV3|A2VNV3_MYCTU Tax_Id=348776 SubName: Full=NADH dehydrogenase I (Chain D) nuoD (NADH-ubiquinone oxidoreductase chain D);[Mycobacterium tuberculosis C] Length = 440 Score = 655 bits (1691), Expect = 0.0 Identities = 323/432 (74%), Positives = 356/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >sp|Q73V12|NUOD_MYCPA Tax_Id=1770 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Mycobacterium paratuberculosis] Length = 441 Score = 655 bits (1690), Expect = 0.0 Identities = 328/444 (73%), Positives = 361/444 (81%), Gaps = 5/444 (1%) Query: 1 MSTSTVPP-DG-GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXX 58 MST+T DG GE +VV GG DW IVVNMGPQHPSTHGV Sbjct: 1 MSTTTESTHDGAGETLVVAGGQDWDKVVEAARSADPGER---IVVNMGPQHPSTHGVLRL 57 Query: 59 XXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEK 118 ARCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEK Sbjct: 58 ILEIEGETVTEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEK 117 Query: 119 LLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFE 178 LLGITD IPER +VIRVM+MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE Sbjct: 118 LLGITDQIPERVNVIRVMMMELNRISSHLVALATGGMELGAMTPMFVGFRGREIVLTLFE 177 Query: 179 SITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGV 238 SITGLRMN AYIRPGG+A DLP +A T++ + ++ L + L+++ DLLNEN IWKART + Sbjct: 178 SITGLRMNSAYIRPGGVAQDLPPNAKTEIAQALDQLRQPLREMGDLLNENAIWKARTQDI 237 Query: 239 GYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVK 298 GYLDLTGCMALGITGPILR+TGLPHDLRK++PYCGYENYEFDVIT D CD+YGRY+IRVK Sbjct: 238 GYLDLTGCMALGITGPILRATGLPHDLRKSEPYCGYENYEFDVITADTCDAYGRYMIRVK 297 Query: 299 EMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLI 358 EM ES+KIVEQCL +L+PGP+M+ + K+AWPADLK+GPDGLGNSPEHIAKIMG SME LI Sbjct: 298 EMWESIKIVEQCLDKLQPGPIMVENGKIAWPADLKVGPDGLGNSPEHIAKIMGGSMEALI 357 Query: 359 HHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATC 418 HHFKLVTEGIRVPPGQVY AVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA C Sbjct: 358 HHFKLVTEGIRVPPGQVYTAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMC 417 Query: 419 EGGMXXXXXXXXXXXXPVMGGVDR 442 EGGM PVMGGVDR Sbjct: 418 EGGMVADLITAVASIDPVMGGVDR 441 >sp|A0QJV0|NUOD_MYCA1 Tax_Id=243243 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Mycobacterium avium] Length = 441 Score = 655 bits (1690), Expect = 0.0 Identities = 328/444 (73%), Positives = 361/444 (81%), Gaps = 5/444 (1%) Query: 1 MSTSTVPP-DG-GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXX 58 MST+T DG GE +VV GG DW IVVNMGPQHPSTHGV Sbjct: 1 MSTTTESTHDGAGETLVVAGGQDWDKVVEAARSADPGER---IVVNMGPQHPSTHGVLRL 57 Query: 59 XXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEK 118 ARCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEK Sbjct: 58 ILEIEGETVTEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEK 117 Query: 119 LLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFE 178 LLGITD IPER +VIRVM+MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE Sbjct: 118 LLGITDQIPERVNVIRVMMMELNRISSHLVALATGGMELGAMTPMFVGFRGREIVLTLFE 177 Query: 179 SITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGV 238 SITGLRMN AYIRPGG+A DLP +A T++ + ++ L + L+++ DLLNEN IWKART + Sbjct: 178 SITGLRMNSAYIRPGGVAQDLPPNAKTEIAQALDQLRQPLREMGDLLNENAIWKARTQDI 237 Query: 239 GYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVK 298 GYLDLTGCMALGITGPILR+TGLPHDLRK++PYCGYENYEFDVIT D CD+YGRY+IRVK Sbjct: 238 GYLDLTGCMALGITGPILRATGLPHDLRKSEPYCGYENYEFDVITADTCDAYGRYMIRVK 297 Query: 299 EMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLI 358 EM ES+KIVEQCL +L+PGP+M+ + K+AWPADLK+GPDGLGNSPEHIAKIMG SME LI Sbjct: 298 EMWESIKIVEQCLDKLQPGPIMVENGKIAWPADLKVGPDGLGNSPEHIAKIMGGSMEALI 357 Query: 359 HHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATC 418 HHFKLVTEGIRVPPGQVY AVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+VAA C Sbjct: 358 HHFKLVTEGIRVPPGQVYTAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMC 417 Query: 419 EGGMXXXXXXXXXXXXPVMGGVDR 442 EGGM PVMGGVDR Sbjct: 418 EGGMVADLITAVASIDPVMGGVDR 441 >tr|C1AYM6|C1AYM6_RHOOB Tax_Id=632772 (nuoD)SubName: Full=NADH-quinone oxidoreductase chain D; EC=1.6.99.5;[Rhodococcus opacus] Length = 438 Score = 655 bits (1689), Expect = 0.0 Identities = 314/402 (78%), Positives = 347/402 (86%) Query: 41 IVVNMGPQHPSTHGVXXXXXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRM 100 IVVNMGPQHPSTHGV ARCGIGYLHTGIEKNLEYRNWTQGVTFVTRM Sbjct: 37 IVVNMGPQHPSTHGVLRLILEIEGETVTEARCGIGYLHTGIEKNLEYRNWTQGVTFVTRM 96 Query: 101 DYLSPFFNETAYCLGVEKLLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAM 160 DYLSPFFNETAYCLGVEKLL IT+ +P+RASVIRVMLMELNRISSHLVALATGGMELGA+ Sbjct: 97 DYLSPFFNETAYCLGVEKLLDITEQVPDRASVIRVMLMELNRISSHLVALATGGMELGAV 156 Query: 161 SAMFYGFREREEILRVFESITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKD 220 +AM +GFRERE +L VFE ITGLRMNHAYIRPGGL+ DLP+ A+ +VR L+ +LP+RL+D Sbjct: 157 TAMLFGFRERELVLDVFEFITGLRMNHAYIRPGGLSQDLPEGAVAKVRELLTVLPERLRD 216 Query: 221 LEDLLNENYIWKARTVGVGYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFD 280 +E+LLNEN IWK RT G+GYLDLTGCMALGITGP+LR+TGLPHDLRK+QPYCGYENYEF+ Sbjct: 217 MENLLNENRIWKGRTEGIGYLDLTGCMALGITGPMLRATGLPHDLRKSQPYCGYENYEFE 276 Query: 281 VITDDRCDSYGRYIIRVKEMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLG 340 V TD CD+YGRY+IRV EM ES+KIVEQCL +L+PGP+M DKK+AWPADL LGPDGLG Sbjct: 277 VSTDTGCDAYGRYLIRVDEMKESLKIVEQCLDKLRPGPIMAEDKKIAWPADLTLGPDGLG 336 Query: 341 NSPEHIAKIMGRSMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYR 400 NSP H+ +IM SME LIHHFKLVTEG RVPPGQVYVAVESPRGELGVHMVSDGGTRPYR Sbjct: 337 NSPGHVREIMDSSMESLIHHFKLVTEGFRVPPGQVYVAVESPRGELGVHMVSDGGTRPYR 396 Query: 401 VHYRDPSFTNLQAVAATCEGGMXXXXXXXXXXXXPVMGGVDR 442 VH+RDPSFTNLQ+VAATCEGGM PVMGGVDR Sbjct: 397 VHFRDPSFTNLQSVAATCEGGMVADVIAAVASIDPVMGGVDR 438 >sp|Q0S447|NUOD_RHOSR Tax_Id=101510 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Rhodococcus sp.] Length = 438 Score = 654 bits (1686), Expect = 0.0 Identities = 313/402 (77%), Positives = 347/402 (86%) Query: 41 IVVNMGPQHPSTHGVXXXXXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRM 100 IVVNMGPQHPSTHGV ARCGIGYLHTGIEKNLEYR WTQGVTFVTRM Sbjct: 37 IVVNMGPQHPSTHGVLRLILEIEGETVTEARCGIGYLHTGIEKNLEYRTWTQGVTFVTRM 96 Query: 101 DYLSPFFNETAYCLGVEKLLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAM 160 DYLSPFFNETAYCLGVEKLL ITD++PERASVIRVMLMELNRISSHLVALATGGMELGA+ Sbjct: 97 DYLSPFFNETAYCLGVEKLLDITDEVPERASVIRVMLMELNRISSHLVALATGGMELGAV 156 Query: 161 SAMFYGFREREEILRVFESITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKD 220 +AM +GFRERE +L VFE ITGLRMNHAYIRPGGL+ DLP+ A+ +VR L+ ++P+RL+D Sbjct: 157 TAMLFGFRERELVLDVFEMITGLRMNHAYIRPGGLSQDLPEGAVEKVRELLALMPERLRD 216 Query: 221 LEDLLNENYIWKARTVGVGYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFD 280 +E+LLN+N IWK RT G+GYLDLTGCMALGITGP+LR+TGLPHDLRK+QPYCGYENYEFD Sbjct: 217 MENLLNDNRIWKGRTQGIGYLDLTGCMALGITGPMLRATGLPHDLRKSQPYCGYENYEFD 276 Query: 281 VITDDRCDSYGRYIIRVKEMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLG 340 V TD CD+YGRY+IRV EM ES+KIVEQCL +L+PGP+M DKK+AWPADL LGPDGLG Sbjct: 277 VSTDTGCDAYGRYLIRVDEMKESLKIVEQCLDKLRPGPIMAEDKKIAWPADLTLGPDGLG 336 Query: 341 NSPEHIAKIMGRSMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYR 400 NSP H+ +IM SME LIHHFKLVTEG RVPPGQVYVAVESPRGELGVHMVSDGGTRP+R Sbjct: 337 NSPGHVREIMDSSMESLIHHFKLVTEGFRVPPGQVYVAVESPRGELGVHMVSDGGTRPFR 396 Query: 401 VHYRDPSFTNLQAVAATCEGGMXXXXXXXXXXXXPVMGGVDR 442 VH+RDPSFTNLQ+VAATCEGGM PVMGGVDR Sbjct: 397 VHFRDPSFTNLQSVAATCEGGMVADVIAAVASIDPVMGGVDR 438 >sp|B2HGE5|NUOD_MYCMM Tax_Id=216594 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Mycobacterium marinum] Length = 432 Score = 654 bits (1686), Expect = 0.0 Identities = 326/431 (75%), Positives = 351/431 (81%), Gaps = 3/431 (0%) Query: 12 EKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXAR 71 E V+V GG DW+ IVVNMGPQHPSTHGV AR Sbjct: 5 ETVLVAGGQDWNEIVEAARGADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVTEAR 61 Query: 72 CGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERAS 131 CGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER + Sbjct: 62 CGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVN 121 Query: 132 VIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYIR 191 VIRVM+MELNRISSHLVALATGGMELGAM+ MF GFR RE IL +FESITGLRMN AYIR Sbjct: 122 VIRVMMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIILSLFESITGLRMNSAYIR 181 Query: 192 PGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALGI 251 PGG+A DLP D T++ + + L + L+++ DLLNEN IWKART VGYLDL GCMALGI Sbjct: 182 PGGVAQDLPPDGPTEIAKAIADLRQPLREMGDLLNENAIWKARTQDVGYLDLAGCMALGI 241 Query: 252 TGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQCL 311 TGPILRSTGLPHDLRK++PYCGYENYEFDVIT D CD+YGRY+IRVKEM ES+KIVEQCL Sbjct: 242 TGPILRSTGLPHDLRKSEPYCGYENYEFDVITADGCDAYGRYMIRVKEMWESIKIVEQCL 301 Query: 312 ARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRVP 371 RL+PGP MI D+KLAWPADLK+GPDG+GNSPEHIAKIMG SME LIHHFKLVTEGIRVP Sbjct: 302 DRLRPGPTMIEDRKLAWPADLKVGPDGMGNSPEHIAKIMGSSMEALIHHFKLVTEGIRVP 361 Query: 372 PGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXXX 431 GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAA EGGM Sbjct: 362 AGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMSEGGMVADLITAVA 421 Query: 432 XXXPVMGGVDR 442 PVMGGVDR Sbjct: 422 SIDPVMGGVDR 432 >tr|D5Z7Y8|D5Z7Y8_MYCTU Tax_Id=537209 SubName: Full=NADH dehydrogenase I (Chain D) nuoD (NADH-ubiquinone oxidoreductase chain D);[Mycobacterium tuberculosis GM 1503] Length = 440 Score = 653 bits (1685), Expect = 0.0 Identities = 322/432 (74%), Positives = 355/432 (82%), Gaps = 3/432 (0%) Query: 11 GEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXA 70 GE V+V GG DW IVVNMGPQHPSTHGV A Sbjct: 12 GETVLVAGGQDWQQVVDAARSADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVVEA 68 Query: 71 RCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERA 130 RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER Sbjct: 69 RCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERV 128 Query: 131 SVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYI 190 +VIRV++MELNRISSHLVALATGGMELGAM+ MF GFR RE +L +FE ITGLRMN AYI Sbjct: 129 NVIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYI 188 Query: 191 RPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALG 250 RPGG+A DLP +A T++ ++ L + L+++ +LLNEN IWKART GVGYLDLTGCMALG Sbjct: 189 RPGGVAQDLPPNAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALG 248 Query: 251 ITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQC 310 ITGPILRSTGLPHDLRK++PYCGY++YEFDVITDD CD+YGRY+IRVKEM ES+KIVEQC Sbjct: 249 ITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQC 308 Query: 311 LARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRV 370 L +L+PGP MISD+KLAWPADL++GPDGLGNSP+HIAKIMG SME LIHHFKLVTEGIRV Sbjct: 309 LDKLRPGPTMISDRKLAWPADLQVGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRV 368 Query: 371 PPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXX 430 P GQVYVAVESPRGELGVHMVSD GTRPYRVHYRDPSFTNLQ+VAA CEGGM Sbjct: 369 PAGQVYVAVESPRGELGVHMVSDAGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAV 428 Query: 431 XXXXPVMGGVDR 442 PVMGGVDR Sbjct: 429 ASIDPVMGGVDR 440 >sp|A0PR41|NUOD_MYCUA Tax_Id=362242 (nuoD)RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D;[Mycobacterium ulcerans] Length = 432 Score = 651 bits (1680), Expect = 0.0 Identities = 325/431 (75%), Positives = 350/431 (81%), Gaps = 3/431 (0%) Query: 12 EKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXXXAR 71 E V+V GG DW+ IVVNMGPQHPSTHGV AR Sbjct: 5 ETVLVAGGQDWNEIVEAARGADPGER---IVVNMGPQHPSTHGVLRLILEIEGETVTEAR 61 Query: 72 CGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPERAS 131 CGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITD+IPER + Sbjct: 62 CGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVN 121 Query: 132 VIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHAYIR 191 VIRVM+MELNRISSHLVALA GGMELGAM+ MF GFR RE IL +FESITGLRMN AYIR Sbjct: 122 VIRVMMMELNRISSHLVALAAGGMELGAMTPMFVGFRAREIILSLFESITGLRMNSAYIR 181 Query: 192 PGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMALGI 251 PGG+A DLP D T++ + + L + L+++ DLLNEN IWKART VGYLDL GCMALGI Sbjct: 182 PGGVAQDLPPDRPTEIAKAIADLRQPLREMGDLLNENAIWKARTQDVGYLDLAGCMALGI 241 Query: 252 TGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVEQCL 311 TGPILRSTGLPHDLRK++PYCGYENYEFDVIT D CD+YGRY+IRVKEM ES+KIVEQCL Sbjct: 242 TGPILRSTGLPHDLRKSEPYCGYENYEFDVITADGCDAYGRYMIRVKEMWESIKIVEQCL 301 Query: 312 ARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGIRVP 371 RL+PGP MI D+KLAWPADLK+GPDG+GNSPEHIAKIMG SME LIHHFKLVTEGIRVP Sbjct: 302 DRLRPGPTMIEDRKLAWPADLKVGPDGMGNSPEHIAKIMGSSMEALIHHFKLVTEGIRVP 361 Query: 372 PGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXXXXX 431 GQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAA EGGM Sbjct: 362 AGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAAMSEGGMVADLITAVA 421 Query: 432 XXXPVMGGVDR 442 PVMGGVDR Sbjct: 422 SIDPVMGGVDR 432 >tr|D5PMU3|D5PMU3_COREQ Tax_Id=525370 (nuoD)SubName: Full=NADH-quinone oxidoreductase subunit C/D; EC=1.6.99.5;[Rhodococcus equi ATCC 33707] Length = 444 Score = 651 bits (1679), Expect = 0.0 Identities = 317/434 (73%), Positives = 353/434 (81%), Gaps = 1/434 (0%) Query: 9 DGGEKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXXXXXXXXXXXX 68 D G+ V VGG DW IVVNMGPQHPSTHGV Sbjct: 12 DNGDAVFTVGGQDWDELVDAASDAHQAGAER-IVVNMGPQHPSTHGVLRLILEIEGETVT 70 Query: 69 XARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDDIPE 128 ARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNE AYCLGVEKLL ITD IPE Sbjct: 71 EARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNEVAYCLGVEKLLDITDRIPE 130 Query: 129 RASVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFESITGLRMNHA 188 RA+V+RV+LMELNRISSHLVALATGGMELGA++ M +GFRERE +L +FE ITGLRMNHA Sbjct: 131 RATVVRVLLMELNRISSHLVALATGGMELGAITPMLFGFRERELVLDIFEMITGLRMNHA 190 Query: 189 YIRPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGVGYLDLTGCMA 248 YIRPGGLA DLPD A+ +VR L++++P+RL+DLEDLLNEN IWKART G+GYLDLTGCMA Sbjct: 191 YIRPGGLAQDLPDGAVAKVRELLDLMPRRLRDLEDLLNENPIWKARTRGIGYLDLTGCMA 250 Query: 249 LGITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVKEMHESVKIVE 308 LG+TGP+LR+TGLP D+R++ PYCGYE YEFDV+TD D YGRY++RV+EM ES+KIVE Sbjct: 251 LGVTGPVLRATGLPLDVRRSDPYCGYETYEFDVVTDTGSDCYGRYLVRVQEMAESLKIVE 310 Query: 309 QCLARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLIHHFKLVTEGI 368 QCL RL+PGPVM++DKK+AWPADL +G DGLGNS EHI +IMG SME LIHHFKLVTEG Sbjct: 311 QCLDRLRPGPVMVADKKIAWPADLAVGADGLGNSLEHIRRIMGTSMEELIHHFKLVTEGF 370 Query: 369 RVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATCEGGMXXXXXX 428 RVPPGQVYV VESPRGELGVHMVSDGGTRP+RVHYRDPSFTNLQAVAA CEGGM Sbjct: 371 RVPPGQVYVPVESPRGELGVHMVSDGGTRPFRVHYRDPSFTNLQAVAAMCEGGMVADVIA 430 Query: 429 XXXXXXPVMGGVDR 442 PVMGGVDR Sbjct: 431 SVASIDPVMGGVDR 444 >tr|D5PDN9|D5PDN9_9MYCO Tax_Id=525368 (nuoD)SubName: Full=NADH-quinone oxidoreductase subunit C/D; EC=1.6.99.5;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 445 Score = 640 bits (1652), Expect = 0.0 Identities = 320/448 (71%), Positives = 354/448 (79%), Gaps = 9/448 (2%) Query: 1 MSTSTVPPDGG------EKVVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHG 54 MST T +GG E V+V GG DW IVVNMGPQHPSTHG Sbjct: 1 MSTITDSTNGGGGAESPETVLVAGGQDWDQIVDAARNADPGER---IVVNMGPQHPSTHG 57 Query: 55 VXXXXXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCL 114 V RCGIGYLHTGIEKNLEYR WTQGVTFVTRMDYLSPFFNETAYCL Sbjct: 58 VLRLILEIEGETVTEVRCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCL 117 Query: 115 GVEKLLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEIL 174 GVEKLLGIT++IPER +VIRVM+MELNRISSHLVALATGGMELGAM+ MF GFR RE +L Sbjct: 118 GVEKLLGITEEIPERVNVIRVMMMELNRISSHLVALATGGMELGAMTPMFVGFRGREIVL 177 Query: 175 RVFESITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKAR 234 +FE I+GLRMN AYIRPGG+A DLP A + V ++ L + L+++ DLLNEN IWKAR Sbjct: 178 TLFEKISGLRMNSAYIRPGGVAQDLPPGAESDVAEALKPLRQVLREMGDLLNENAIWKAR 237 Query: 235 TVGVGYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYI 294 T VGYLDLTGCMALGITGPILR+TGLPHDLRK++PYCGYENYEFDV+T D CD+YGRY+ Sbjct: 238 TQDVGYLDLTGCMALGITGPILRATGLPHDLRKSEPYCGYENYEFDVMTADTCDAYGRYM 297 Query: 295 IRVKEMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSM 354 IRV EM ES+KI+EQCL +LKPGP+M+ D+K+AWPADLK+GPDG+GNS EHIAKIMG SM Sbjct: 298 IRVNEMWESIKIIEQCLDKLKPGPIMVEDRKIAWPADLKVGPDGMGNSEEHIAKIMGSSM 357 Query: 355 EGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAV 414 E LIHHFKLVTEGIRVP GQVY AVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQ+V Sbjct: 358 EALIHHFKLVTEGIRVPAGQVYTAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSV 417 Query: 415 AATCEGGMXXXXXXXXXXXXPVMGGVDR 442 AA CEGGM PVMGGVDR Sbjct: 418 AAMCEGGMVADLITAVASIDPVMGGVDR 445 >tr|D6EFL7|D6EFL7_STRLI Tax_Id=457428 SubName: Full=NADH dehydrogenase (Quinone), D subunit;[Streptomyces lividans TK24] Length = 440 Score = 603 bits (1555), Expect = e-170 Identities = 300/444 (67%), Positives = 338/444 (76%), Gaps = 6/444 (1%) Query: 1 MSTSTVPPDGGEK--VVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXX 58 MSTS P + V V G DW IVVNMGPQHPSTHGV Sbjct: 1 MSTSHASPRETTEGTVYTVTGGDWDEVVQSAARADDER----IVVNMGPQHPSTHGVLRL 56 Query: 59 XXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEK 118 ARCGIGYLHTGIEKNLEYR WTQG TFVTRMDYL+PFFNE AYCLGVEK Sbjct: 57 ILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGTTFVTRMDYLTPFFNEAAYCLGVEK 116 Query: 119 LLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFE 178 LLGI D IP+RA++IRV+LMELNR+SSHLVA+ATGGMELGA + M YGFR+RE IL ++E Sbjct: 117 LLGIDDQIPDRATIIRVLLMELNRLSSHLVAIATGGMELGATTIMIYGFRDRELILDIYE 176 Query: 179 SITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGV 238 ITGLRMNHAYIRPGGLA DLP A+ Q+R V+ + K L + + L N I+KAR V Sbjct: 177 LITGLRMNHAYIRPGGLAQDLPPGAVDQIREFVKKMNKNLPEYDKLATGNPIFKARMQDV 236 Query: 239 GYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVK 298 GYLDL GCMALG TGP+LRSTGLPHDLRK QPYCGYE Y+FDV T D CDSYGR++IR++ Sbjct: 237 GYLDLAGCMALGATGPVLRSTGLPHDLRKTQPYCGYETYDFDVPTADTCDSYGRFLIRLE 296 Query: 299 EMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLI 358 EM +S++IVEQCL RL+PGPVM++DKK+AWPA L LGPDGLGNS +HI KIMG SME LI Sbjct: 297 EMRQSLRIVEQCLDRLQPGPVMVADKKIAWPAQLALGPDGLGNSLDHIKKIMGTSMEALI 356 Query: 359 HHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATC 418 HHFKLVTEG RVPPGQVY AVESP+GELGVH+VSDGGTRP+RVH+RDPSFTNLQA+AA C Sbjct: 357 HHFKLVTEGFRVPPGQVYTAVESPKGELGVHVVSDGGTRPFRVHFRDPSFTNLQAMAAMC 416 Query: 419 EGGMXXXXXXXXXXXXPVMGGVDR 442 EGG PVMGGVDR Sbjct: 417 EGGQVADVIVAVASIDPVMGGVDR 440 >sp|Q9XAQ7|NUOD2_STRCO Tax_Id=1902 (nuoD2)RecName: Full=NADH-quinone oxidoreductase subunit D 2; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D 2; AltName: Full=NDH-1 subunit D 2;[Streptomyces coelicolor] Length = 440 Score = 601 bits (1549), Expect = e-170 Identities = 299/444 (67%), Positives = 337/444 (75%), Gaps = 6/444 (1%) Query: 1 MSTSTVPPDGGEK--VVVVGGNDWHXXXXXXXXXXXXXXXXXIVVNMGPQHPSTHGVXXX 58 MSTS P + V V G DW IVVNMGPQHPSTHGV Sbjct: 1 MSTSHASPRETTEGTVYTVTGGDWDEVVQSAARADDER----IVVNMGPQHPSTHGVLRL 56 Query: 59 XXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRMDYLSPFFNETAYCLGVEK 118 ARCGIGYLHTGIEKNLEYR WTQG TFVTRMDYL+PFFNE AYCLGVEK Sbjct: 57 ILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGTTFVTRMDYLTPFFNEAAYCLGVEK 116 Query: 119 LLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAMSAMFYGFREREEILRVFE 178 LLGI D IP+RA++IRV+LMELNR+SSHLVA+ATGGMELGA + M YGFR+RE IL ++E Sbjct: 117 LLGIDDQIPDRATIIRVLLMELNRLSSHLVAIATGGMELGATTIMIYGFRDRELILDIYE 176 Query: 179 SITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKDLEDLLNENYIWKARTVGV 238 ITGLRMNHAYIRPGGLA DLP A+ Q+R V+ + K L + + L N I+KAR V Sbjct: 177 LITGLRMNHAYIRPGGLAQDLPPGAVDQIREFVKKMNKNLPEYDKLATGNPIFKARMQDV 236 Query: 239 GYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFDVITDDRCDSYGRYIIRVK 298 GYLDL GCMALG TGP+LRSTGLPHDLRK QPYCGYE Y+FDV T D CDSYGR++IR++ Sbjct: 237 GYLDLAGCMALGATGPVLRSTGLPHDLRKTQPYCGYETYDFDVPTADTCDSYGRFLIRLE 296 Query: 299 EMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLGNSPEHIAKIMGRSMEGLI 358 EM +S++IVEQCL RL+PGPVM++DKK+AWPA L LGPDGLGNS +HI KIMG SME LI Sbjct: 297 EMRQSLRIVEQCLDRLQPGPVMVADKKIAWPAQLALGPDGLGNSLDHIKKIMGTSMEALI 356 Query: 359 HHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQAVAATC 418 HHFKLVTEG RVPP QVY AVESP+GELGVH+VSDGGTRP+RVH+RDPSFTNLQA+AA C Sbjct: 357 HHFKLVTEGFRVPPAQVYTAVESPKGELGVHVVSDGGTRPFRVHFRDPSFTNLQAMAAMC 416 Query: 419 EGGMXXXXXXXXXXXXPVMGGVDR 442 EGG PVMGGVDR Sbjct: 417 EGGQVADVIVAVASIDPVMGGVDR 440 >tr|B4V2X3|B4V2X3_9ACTO Tax_Id=465541 SubName: Full=NADH dehydrogenase subunit D;[Streptomyces sp. Mg1] Length = 446 Score = 600 bits (1547), Expect = e-169 Identities = 289/402 (71%), Positives = 327/402 (81%) Query: 41 IVVNMGPQHPSTHGVXXXXXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRM 100 IVVNMGPQHPSTHGV ARCGIGYLHTGIEKNLE+RNWTQG TFVTRM Sbjct: 45 IVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRNWTQGTTFVTRM 104 Query: 101 DYLSPFFNETAYCLGVEKLLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAM 160 DYL+PFFNETAYCLGVEKLLGITD IP+RA+V+RV+LMELNR+SSHLV +ATGGMELGA Sbjct: 105 DYLTPFFNETAYCLGVEKLLGITDQIPDRATVLRVLLMELNRLSSHLVCIATGGMELGAT 164 Query: 161 SAMFYGFREREEILRVFESITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKD 220 + M YGFR+RE IL +FE ITGLRMNHA+IRPGGLA DLP A+ Q+R V+ + K L + Sbjct: 165 TIMIYGFRDRELILDIFELITGLRMNHAFIRPGGLAQDLPPGAVDQLRDFVKTMKKNLPE 224 Query: 221 LEDLLNENYIWKARTVGVGYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFD 280 + L N I+KAR VGYLDLTGCMALG TGPILRS GLPHDLRK+ PYCGYENYEFD Sbjct: 225 YDKLATGNPIFKARMQDVGYLDLTGCMALGATGPILRSAGLPHDLRKSDPYCGYENYEFD 284 Query: 281 VITDDRCDSYGRYIIRVKEMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLG 340 V T + CDSYGR++IR++EM +S++IVEQCL RL+PGPVM++DKK+AWPA L +GPDGLG Sbjct: 285 VPTTESCDSYGRFLIRLEEMRQSLRIVEQCLERLEPGPVMVADKKIAWPAQLAMGPDGLG 344 Query: 341 NSPEHIAKIMGRSMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYR 400 NS +HI IMG SME LIHHFKLVTEG RVP GQ Y AVESP+GELGVH+VSDGGTRPYR Sbjct: 345 NSLDHIRTIMGTSMEALIHHFKLVTEGFRVPAGQAYAAVESPKGELGVHVVSDGGTRPYR 404 Query: 401 VHYRDPSFTNLQAVAATCEGGMXXXXXXXXXXXXPVMGGVDR 442 VH+RDPSFTNLQA+AA CEGG PVMGGVDR Sbjct: 405 VHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 446 >tr|D5UVH6|D5UVH6_TSUPA Tax_Id=521096 SubName: Full=NADH dehydrogenase I, D subunit; EC=1.6.99.5;[Tsukamurella paurometabola DSM 20162] Length = 426 Score = 600 bits (1546), Expect = e-169 Identities = 293/402 (72%), Positives = 327/402 (81%) Query: 41 IVVNMGPQHPSTHGVXXXXXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRM 100 IVVNMGPQHPSTHGV ARCGIG+LHTGIEKNLE+R WTQG TFVTRM Sbjct: 25 IVVNMGPQHPSTHGVLRLILELDGETVTEARCGIGFLHTGIEKNLEFRTWTQGTTFVTRM 84 Query: 101 DYLSPFFNETAYCLGVEKLLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAM 160 DYL+P FNETAYCL VEKLLGITD+IPERA+VIRV++MELNR++S LVALATGGMELGA+ Sbjct: 85 DYLAPLFNETAYCLAVEKLLGITDEIPERATVIRVLMMELNRVTSDLVALATGGMELGAV 144 Query: 161 SAMFYGFREREEILRVFESITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKD 220 S M GF RE+IL VFE+ITGLRMNHAYIRPGG+AADLPDDA+ Q+R L+ LP +L Sbjct: 145 SPMLKGFEIREQILNVFETITGLRMNHAYIRPGGVAADLPDDALPQIRELLRTLPPQLDS 204 Query: 221 LEDLLNENYIWKARTVGVGYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFD 280 + +L N IW ART VGYLDLTG MALGITGP+LRSTGLPHDLR+++PYCGYE+YEFD Sbjct: 205 MAGMLTGNPIWMARTKDVGYLDLTGAMALGITGPVLRSTGLPHDLRRSEPYCGYEDYEFD 264 Query: 281 VITDDRCDSYGRYIIRVKEMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLG 340 VITD CD YGRY+IRV EM +S++IVEQCL RL PGPVMI D +L WPADL +GPDGLG Sbjct: 265 VITDTGCDCYGRYLIRVHEMTQSLRIVEQCLDRLAPGPVMIDDARLGWPADLTVGPDGLG 324 Query: 341 NSPEHIAKIMGRSMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYR 400 NS HIA+IMG SME LIHHFKLVTEG VP GQV V+VE+PRGEL VH VSDGGTRPYR Sbjct: 325 NSRAHIAEIMGESMESLIHHFKLVTEGFAVPAGQVAVSVEAPRGELLVHAVSDGGTRPYR 384 Query: 401 VHYRDPSFTNLQAVAATCEGGMXXXXXXXXXXXXPVMGGVDR 442 VH+RDPSFTNLQAVAA CEGGM PVMGGVDR Sbjct: 385 VHFRDPSFTNLQAVAAMCEGGMVSDVIAAVASIDPVMGGVDR 426 >sp|Q82DX8|NUOD1_STRAW Tax_Id=33903 (nuoD1)RecName: Full=NADH-quinone oxidoreductase subunit D 1; EC=1.6.99.5; AltName: Full=NADH dehydrogenase I subunit D 1; AltName: Full=NDH-1 subunit D 1;[Streptomyces avermitilis] Length = 443 Score = 597 bits (1539), Expect = e-168 Identities = 289/402 (71%), Positives = 324/402 (80%) Query: 41 IVVNMGPQHPSTHGVXXXXXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRM 100 IVVNMGPQHPSTHGV ARCGIGYLHTGIEKNLEYR WTQG TFVTRM Sbjct: 42 IVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGTTFVTRM 101 Query: 101 DYLSPFFNETAYCLGVEKLLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAM 160 DYL+PFFNETAYCL VEKLLGI ++IP+RAS+IRV+LMELNR+SSHLV +ATGGMELGA Sbjct: 102 DYLTPFFNETAYCLAVEKLLGIENEIPDRASIIRVLLMELNRMSSHLVCIATGGMELGAT 161 Query: 161 SAMFYGFREREEILRVFESITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKD 220 + M YGFR+RE IL ++E ITGLRMNHAYIRPGGLA DLP A+ Q+R V+ + K L + Sbjct: 162 TIMIYGFRDRELILDIYELITGLRMNHAYIRPGGLAQDLPPGAVDQIREFVKKMKKNLPE 221 Query: 221 LEDLLNENYIWKARTVGVGYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFD 280 + L N I+KAR VGYLDL GCMALG TGPILRS GLPHDLRK+QPYCGYE Y+FD Sbjct: 222 YDKLATGNPIFKARMQDVGYLDLAGCMALGATGPILRSAGLPHDLRKSQPYCGYETYDFD 281 Query: 281 VITDDRCDSYGRYIIRVKEMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLG 340 V T D CDSYGR++IR++EM +S++IVEQCL RL PGPVM++DKK+AWPA L LGPDGLG Sbjct: 282 VPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRLAPGPVMVADKKIAWPAQLALGPDGLG 341 Query: 341 NSPEHIAKIMGRSMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYR 400 NS +HI KIMG SME LIHHFKLVTEG RVPPGQ Y AVESP+GELGVH VSDGGTRPYR Sbjct: 342 NSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPGQTYSAVESPKGELGVHAVSDGGTRPYR 401 Query: 401 VHYRDPSFTNLQAVAATCEGGMXXXXXXXXXXXXPVMGGVDR 442 VH+RDPSFTNLQA+AA CEGG PVMGGVDR Sbjct: 402 VHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 443 >tr|C9YXV9|C9YXV9_STRSW Tax_Id=680198 (nuoD)SubName: Full=NuoD, NADH dehydrogenase subunit;[Streptomyces scabies] Length = 446 Score = 597 bits (1539), Expect = e-168 Identities = 286/402 (71%), Positives = 325/402 (80%) Query: 41 IVVNMGPQHPSTHGVXXXXXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRM 100 I+VNMGPQHPSTHGV ARCGIGYLHTGIEKNLEYR WTQG TFVTRM Sbjct: 45 IIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGTTFVTRM 104 Query: 101 DYLSPFFNETAYCLGVEKLLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAM 160 DYL+PFFNETAYCL VEKLLGI D+IP+RA++IRV+LMELNR+SSHLV +ATGGMELGA Sbjct: 105 DYLTPFFNETAYCLAVEKLLGIEDEIPDRATIIRVLLMELNRLSSHLVCIATGGMELGAT 164 Query: 161 SAMFYGFREREEILRVFESITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKD 220 + M YGFR+RE IL ++E ITGLRMNHAYIRPGGLA DLP A+ Q+R V+ + K L + Sbjct: 165 TIMIYGFRDRELILDIYELITGLRMNHAYIRPGGLAQDLPPGAVDQIREFVKKMEKNLPE 224 Query: 221 LEDLLNENYIWKARTVGVGYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFD 280 + L N I+KAR +G+LDL GCMALG TGPILRS GLPHDLRKAQPYCGYE Y+FD Sbjct: 225 YDKLATGNPIFKARMQDIGHLDLAGCMALGATGPILRSAGLPHDLRKAQPYCGYETYDFD 284 Query: 281 VITDDRCDSYGRYIIRVKEMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLG 340 V T D CDSYGR++IR++EM +S++IVEQCL RL+PGPVM+ DKK+AWPA L LGPDGLG Sbjct: 285 VPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRLQPGPVMVGDKKIAWPAQLALGPDGLG 344 Query: 341 NSPEHIAKIMGRSMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYR 400 NS +HI KIMG SME LIHHFKLVTEG RVPPGQ Y AVESP+GELGVH+VSDGGTRP+R Sbjct: 345 NSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPGQAYAAVESPKGELGVHVVSDGGTRPFR 404 Query: 401 VHYRDPSFTNLQAVAATCEGGMXXXXXXXXXXXXPVMGGVDR 442 VH+RDPSFTNLQA+AA CEGG PVMGGVDR Sbjct: 405 VHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 446 >tr|D6A4X5|D6A4X5_9ACTO Tax_Id=566461 SubName: Full=NuoD;[Streptomyces ghanaensis ATCC 14672] Length = 436 Score = 595 bits (1534), Expect = e-168 Identities = 286/402 (71%), Positives = 323/402 (80%) Query: 41 IVVNMGPQHPSTHGVXXXXXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRM 100 IVVNMGPQHPSTHGV ARCGIGYLHTGIEKNLEYR WTQG TFVTRM Sbjct: 35 IVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGTTFVTRM 94 Query: 101 DYLSPFFNETAYCLGVEKLLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAM 160 DYL+ FFNETAYCL VEKLLGI D +P+RAS+IRV+LMELNR+SSHLV +ATGGMELGA Sbjct: 95 DYLTSFFNETAYCLSVEKLLGIEDQVPDRASIIRVLLMELNRLSSHLVCIATGGMELGAT 154 Query: 161 SAMFYGFREREEILRVFESITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKD 220 + M YGFR+RE IL ++E ITGLRMNHAYIRPGGLA DLP A+ Q+R V+ + K L + Sbjct: 155 TIMIYGFRDRELILDIYELITGLRMNHAYIRPGGLAQDLPPGAVDQIRAFVKTMKKNLPE 214 Query: 221 LEDLLNENYIWKARTVGVGYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFD 280 + L N I+KAR VGYLDL GCMALG TGPILRSTGLPHDLRKAQPYCGYE Y+F+ Sbjct: 215 YDKLATGNPIFKARMQDVGYLDLAGCMALGATGPILRSTGLPHDLRKAQPYCGYETYDFE 274 Query: 281 VITDDRCDSYGRYIIRVKEMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLG 340 + T D CD+YGR++IR++EM +S+ IVEQCL RL+PGPVM++DKK+AWPA L LGPDGLG Sbjct: 275 IPTADTCDAYGRFLIRLEEMRQSLHIVEQCLDRLQPGPVMVADKKIAWPAQLALGPDGLG 334 Query: 341 NSPEHIAKIMGRSMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYR 400 NS +HI KIMG SME LIHHFKLVTEG RVPPGQ Y AVESP+GELG H+VSDGGTRPYR Sbjct: 335 NSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPGQAYTAVESPKGELGAHVVSDGGTRPYR 394 Query: 401 VHYRDPSFTNLQAVAATCEGGMXXXXXXXXXXXXPVMGGVDR 442 VH+RDPSFTNLQA+AA CEGG PVMGGVDR Sbjct: 395 VHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 436 >tr|B5HDM5|B5HDM5_STRPR Tax_Id=457429 SubName: Full=NuoD;[Streptomyces pristinaespiralis ATCC 25486] Length = 440 Score = 595 bits (1534), Expect = e-168 Identities = 288/402 (71%), Positives = 324/402 (80%) Query: 41 IVVNMGPQHPSTHGVXXXXXXXXXXXXXXARCGIGYLHTGIEKNLEYRNWTQGVTFVTRM 100 IVVNMGPQHPSTHGV ARCGIGYLHTGIEKNLEYR WTQG TFVTRM Sbjct: 39 IVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGTTFVTRM 98 Query: 101 DYLSPFFNETAYCLGVEKLLGITDDIPERASVIRVMLMELNRISSHLVALATGGMELGAM 160 DYL+PFFNETAYCLGVE+LLGI D IP+RA+VIRV+LMELNR+SSHLV +ATGGMELGA Sbjct: 99 DYLTPFFNETAYCLGVERLLGIEDQIPDRATVIRVLLMELNRLSSHLVCIATGGMELGAT 158 Query: 161 SAMFYGFREREEILRVFESITGLRMNHAYIRPGGLAADLPDDAITQVRRLVEILPKRLKD 220 + M YGFR+RE IL ++E ITGLRMNHAYIRPGGLA DLP A+ Q+R V+ + K L + Sbjct: 159 TIMIYGFRDRELILDIYELITGLRMNHAYIRPGGLAQDLPPGAVDQLREFVKTMKKNLPE 218 Query: 221 LEDLLNENYIWKARTVGVGYLDLTGCMALGITGPILRSTGLPHDLRKAQPYCGYENYEFD 280 + L N I+KAR VGYLDLTGCMALG TGPILRSTGL HDLRK PYCGYE Y+FD Sbjct: 219 YDKLATGNPIFKARMQDVGYLDLTGCMALGATGPILRSTGLAHDLRKTDPYCGYETYDFD 278 Query: 281 VITDDRCDSYGRYIIRVKEMHESVKIVEQCLARLKPGPVMISDKKLAWPADLKLGPDGLG 340 V T D CDSYGR++IR++EM +S++IVEQCL RL+PGPVM++DKK+AWPA L LGPDGLG Sbjct: 279 VPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRLEPGPVMVADKKIAWPAQLALGPDGLG 338 Query: 341 NSPEHIAKIMGRSMEGLIHHFKLVTEGIRVPPGQVYVAVESPRGELGVHMVSDGGTRPYR 400 NS +HI KIMG SME LIHHFKLVTEG RVP GQ Y AVESP+GELGVH+VSDGGTRP+R Sbjct: 339 NSLDHIKKIMGTSMEALIHHFKLVTEGFRVPAGQAYAAVESPKGELGVHVVSDGGTRPFR 398 Query: 401 VHYRDPSFTNLQAVAATCEGGMXXXXXXXXXXXXPVMGGVDR 442 VH+RDPSFTNLQA+AA CEGG PVMGGVDR Sbjct: 399 VHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.321 0.140 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 3,511,255,232 Number of extensions: 142595076 Number of successful extensions: 365238 Number of sequences better than 10.0: 2522 Number of HSP's gapped: 360349 Number of HSP's successfully gapped: 3056 Length of query: 442 Length of database: 4,236,830,644 Length adjustment: 141 Effective length of query: 301 Effective length of database: 2,473,221,820 Effective search space: 744439767820 Effective search space used: 744439767820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 82 (36.2 bits)