BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSMEG_2437
         (173 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           12,507,864 sequences; 4,236,830,644 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

sp|A0QV39|RIMM_MYCS2 Tax_Id=246196 (rimM)RecName: Full=Ribosome ...   338   2e-91
sp|A1T754|RIMM_MYCVP Tax_Id=350058 (rimM)RecName: Full=Ribosome ...   241   3e-62
sp|Q1BAK8|RIMM_MYCSS Tax_Id=164756 (rimM)RecName: Full=Ribosome ...   237   4e-61
sp|A1UEF4|RIMM_MYCSK Tax_Id=189918 (rimM)RecName: Full=Ribosome ...   237   4e-61
sp|A3PXV8|RIMM_MYCSJ Tax_Id=164757 (rimM)RecName: Full=Ribosome ...   237   4e-61
sp|A4TE78|RIMM_MYCGI Tax_Id=350054 (rimM)RecName: Full=Ribosome ...   235   1e-60
tr|D5PJ44|D5PJ44_9MYCO Tax_Id=525368 (rimM)SubName: Full=16S rRN...   231   2e-59
sp|Q73VN8|RIMM_MYCPA Tax_Id=1770 (rimM)RecName: Full=Ribosome ma...   229   7e-59
sp|A0QJ46|RIMM_MYCA1 Tax_Id=243243 (rimM)RecName: Full=Ribosome ...   229   7e-59
sp|B1MDI4|RIMM_MYCA9 Tax_Id=561007 (rimM)RecName: Full=Ribosome ...   229   1e-58
sp|Q5YS37|RIMM_NOCFA Tax_Id=37329 (rimM)RecName: Full=Ribosome m...   224   3e-57
sp|B2HJL4|RIMM_MYCMM Tax_Id=216594 (rimM)RecName: Full=Ribosome ...   218   2e-55
sp|A0PQ65|RIMM_MYCUA Tax_Id=362242 (rimM)RecName: Full=Ribosome ...   217   5e-55
tr|C3JLT7|C3JLT7_RHOER Tax_Id=596309 (rimM)RecName: Full=Ribosom...   216   8e-55
sp|O33016|RIMM_MYCLE Tax_Id=1769 (rimM)RecName: Full=Ribosome ma...   216   1e-54
sp|B8ZRW7|RIMM_MYCLB Tax_Id=561304 (rimM)RecName: Full=Ribosome ...   216   1e-54
sp|C0ZXR9|RIMM_RHOE4 Tax_Id=234621 (rimM)RecName: Full=Ribosome ...   212   2e-53
sp|Q0S2C6|RIMM_RHOSR Tax_Id=101510 (rimM)RecName: Full=Ribosome ...   209   1e-52
sp|C1B2R9|RIMM_RHOOB Tax_Id=632772 (rimM)RecName: Full=Ribosome ...   209   1e-52
tr|D5UYD3|D5UYD3_TSUPA Tax_Id=521096 SubName: Full=16S rRNA proc...   208   2e-52
sp|P66653|RIMM_MYCTU Tax_Id=1773 (rimM)RecName: Full=Ribosome ma...   204   3e-51
sp|A5U6R2|RIMM_MYCTA Tax_Id=419947 (rimM)RecName: Full=Ribosome ...   204   3e-51
sp|C1AG22|RIMM_MYCBT Tax_Id=561275 (rimM)RecName: Full=Ribosome ...   204   3e-51
sp|A1KMQ1|RIMM_MYCBP Tax_Id=410289 (rimM)RecName: Full=Ribosome ...   204   3e-51
sp|P66654|RIMM_MYCBO Tax_Id=1765 (rimM)RecName: Full=Ribosome ma...   204   3e-51
tr|C7MY86|C7MY86_SACVD Tax_Id=471857 (rimM)RecName: Full=Ribosom...   204   3e-51
tr|C6DWE7|C6DWE7_MYCTK Tax_Id=478434 (rimM)RecName: Full=Ribosom...   204   3e-51
tr|A5WRF9|A5WRF9_MYCTF Tax_Id=336982 (rimM)RecName: Full=Ribosom...   204   3e-51
tr|D6G253|D6G253_MYCTU Tax_Id=478435 SubName: Full=16S rRNA proc...   204   3e-51
tr|D6FP98|D6FP98_MYCTU Tax_Id=611304 SubName: Full=16S rRNA proc...   204   3e-51
tr|D6FKE0|D6FKE0_MYCTU Tax_Id=611303 SubName: Full=16S rRNA proc...   204   3e-51
tr|D6F836|D6F836_MYCTU Tax_Id=611302 SubName: Full=16S rRNA proc...   204   3e-51
tr|D5ZK96|D5ZK96_MYCTU Tax_Id=537210 SubName: Full=16S rRNA proc...   204   3e-51
tr|D5YVJ0|D5YVJ0_MYCTU Tax_Id=515616 SubName: Full=Ribosome matu...   204   3e-51
tr|D5YIL4|D5YIL4_MYCTU Tax_Id=520140 SubName: Full=Ribosome matu...   204   3e-51
tr|D5Y6Z5|D5Y6Z5_MYCTU Tax_Id=520141 SubName: Full=Ribosome matu...   204   3e-51
tr|D5XXP8|D5XXP8_MYCTU Tax_Id=515617 SubName: Full=16S rRNA proc...   204   3e-51
tr|A4KKH0|A4KKH0_MYCTU Tax_Id=395095 (rimM)RecName: Full=Ribosom...   204   3e-51
tr|A2VLN6|A2VLN6_MYCTU Tax_Id=348776 (rimM)RecName: Full=Ribosom...   204   3e-51
tr|D0LAM4|D0LAM4_GORB4 Tax_Id=526226 (rimM)RecName: Full=Ribosom...   202   9e-51
tr|D5PN40|D5PN40_COREQ Tax_Id=525370 (rimM)SubName: Full=16S rRN...   199   1e-49
tr|C6WEV7|C6WEV7_ACTMD Tax_Id=446462 (rimM)RecName: Full=Ribosom...   177   4e-43
sp|A4FME9|RIMM_SACEN Tax_Id=405948 (rimM)RecName: Full=Ribosome ...   176   1e-42
tr|C1YHQ2|C1YHQ2_NOCDA Tax_Id=446468 (rimM)RecName: Full=Ribosom...   173   6e-42
tr|D1AB16|D1AB16_THECD Tax_Id=471852 (rimM)RecName: Full=Ribosom...   171   4e-41

>sp|A0QV39|RIMM_MYCS2 Tax_Id=246196 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium smegmatis]
          Length = 173

 Score =  338 bits (866), Expect = 2e-91
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRPRSGAEREYTIESVRAHGGR 60
           MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRPRSGAEREYTIESVRAHGGR
Sbjct: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRPRSGAEREYTIESVRAHGGR 60

Query: 61  LLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKVA 120
           LLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKVA
Sbjct: 61  LLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKVA 120

Query: 121 EVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDLA 173
           EVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDLA
Sbjct: 121 EVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDLA 173


>sp|A1T754|RIMM_MYCVP Tax_Id=350058 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium vanbaalenii]
          Length = 172

 Score =  241 bits (614), Expect = 3e-62
 Identities = 123/173 (71%), Positives = 141/173 (81%), Gaps = 2/173 (1%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-RSGAEREYTIESVRAHGG 59
           MDLVVGRVVKAHG++GE+ V++RTDDPE RF  GAVLRGRP R GAERE+ IESVR+HG 
Sbjct: 1   MDLVVGRVVKAHGVTGELAVDVRTDDPEGRFVAGAVLRGRPARGGAEREFVIESVRSHGD 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           R+L+RL GV DR+ AD LRGT+FLVD+AELP I+DPDEFYDH+LEGM V T    PVG V
Sbjct: 61  RMLIRLQGVGDRDAADALRGTLFLVDSAELPPIEDPDEFYDHQLEGMAVSTTGGQPVGTV 120

Query: 120 AEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           AEVLHTA GE+LAV+ D  G E+LVPFV AIV SVS  +  I IDPPEGLLDL
Sbjct: 121 AEVLHTAAGELLAVR-DPDGAEVLVPFVSAIVVSVSLADNAIEIDPPEGLLDL 172


>sp|Q1BAK8|RIMM_MYCSS Tax_Id=164756 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium sp.]
          Length = 173

 Score =  237 bits (604), Expect = 4e-61
 Identities = 121/173 (69%), Positives = 141/173 (81%), Gaps = 2/173 (1%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGR-PRSGAEREYTIESVRAHGG 59
           MDLV+GRV KAHG++GE+VVE+RTDDP+ARF PGA LRGR PR GAER + +ESVR HGG
Sbjct: 1   MDLVIGRVAKAHGVTGELVVEVRTDDPDARFVPGARLRGRAPRGGAERAFVVESVRPHGG 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           RLL+RL GVADR  AD LRGTVFLVD+A+LP I++PDE+YDH+LEG+ V TVD   VG V
Sbjct: 61  RLLLRLDGVADRTAADALRGTVFLVDSADLPPIEEPDEYYDHQLEGLLVRTVDGVDVGTV 120

Query: 120 AEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           AEVLHTA GE+L+VK  EG  EILVPFV AIV  VS  +  + IDPPEGLLDL
Sbjct: 121 AEVLHTAAGELLSVKTPEGA-EILVPFVTAIVPRVSLADGLVEIDPPEGLLDL 172


>sp|A1UEF4|RIMM_MYCSK Tax_Id=189918 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium sp.]
          Length = 173

 Score =  237 bits (604), Expect = 4e-61
 Identities = 121/173 (69%), Positives = 141/173 (81%), Gaps = 2/173 (1%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGR-PRSGAEREYTIESVRAHGG 59
           MDLV+GRV KAHG++GE+VVE+RTDDP+ARF PGA LRGR PR GAER + +ESVR HGG
Sbjct: 1   MDLVIGRVAKAHGVTGELVVEVRTDDPDARFVPGARLRGRAPRGGAERAFVVESVRPHGG 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           RLL+RL GVADR  AD LRGTVFLVD+A+LP I++PDE+YDH+LEG+ V TVD   VG V
Sbjct: 61  RLLLRLDGVADRTAADALRGTVFLVDSADLPPIEEPDEYYDHQLEGLLVRTVDGVDVGTV 120

Query: 120 AEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           AEVLHTA GE+L+VK  EG  EILVPFV AIV  VS  +  + IDPPEGLLDL
Sbjct: 121 AEVLHTAAGELLSVKTPEGA-EILVPFVTAIVPRVSLADGLVEIDPPEGLLDL 172


>sp|A3PXV8|RIMM_MYCSJ Tax_Id=164757 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium sp.]
          Length = 173

 Score =  237 bits (604), Expect = 4e-61
 Identities = 121/173 (69%), Positives = 141/173 (81%), Gaps = 2/173 (1%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGR-PRSGAEREYTIESVRAHGG 59
           MDLV+GRV KAHG++GE+VVE+RTDDP+ARF PGA LRGR PR GAER + +ESVR HGG
Sbjct: 1   MDLVIGRVAKAHGVTGELVVEVRTDDPDARFVPGARLRGRAPRGGAERAFVVESVRPHGG 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           RLL+RL GVADR  AD LRGTVFLVD+A+LP I++PDE+YDH+LEG+ V TVD   VG V
Sbjct: 61  RLLLRLDGVADRTAADALRGTVFLVDSADLPPIEEPDEYYDHQLEGLLVRTVDGVDVGTV 120

Query: 120 AEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           AEVLHTA GE+L+VK  EG  EILVPFV AIV  VS  +  + IDPPEGLLDL
Sbjct: 121 AEVLHTAAGELLSVKTPEGA-EILVPFVTAIVPRVSLADGLVEIDPPEGLLDL 172


>sp|A4TE78|RIMM_MYCGI Tax_Id=350054 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium gilvum]
          Length = 173

 Score =  235 bits (600), Expect = 1e-60
 Identities = 120/173 (69%), Positives = 139/173 (80%), Gaps = 2/173 (1%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-RSGAEREYTIESVRAHGG 59
           MDLVVGRV KAHG++GE+ VE+RTDDP+ RF  GAVLRGRP R GAEREY IESVR HG 
Sbjct: 1   MDLVVGRVAKAHGVTGELTVEVRTDDPQGRFVRGAVLRGRPPRGGAEREYVIESVRTHGD 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           RLLVR  GVADR+ AD LRGTVFLVD+A+LP I+DPDEFYDH+LEG+ V+T     VGKV
Sbjct: 61  RLLVRFDGVADRDAADALRGTVFLVDSADLPPIEDPDEFYDHQLEGLTVITTSGGEVGKV 120

Query: 120 AEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           AEVLHTA GE+LAV+  +   E+LVPFV AIV SVS  +  I IDPP+GLL+L
Sbjct: 121 AEVLHTAAGELLAVRTAD-DTEVLVPFVSAIVLSVSLDDQLITIDPPDGLLEL 172


>tr|D5PJ44|D5PJ44_9MYCO Tax_Id=525368 (rimM)SubName: Full=16S rRNA
           processing protein RimM;[Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 173

 Score =  231 bits (589), Expect = 2e-59
 Identities = 120/174 (68%), Positives = 138/174 (79%), Gaps = 2/174 (1%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-RSGAEREYTIESVRAHGG 59
           M+L VGRV KAHGI GEVVVEIRTDDP ARFAPG  LRGR  R G ER++ +ES R HGG
Sbjct: 1   MELTVGRVAKAHGIGGEVVVEIRTDDPGARFAPGNTLRGRASRGGGERDFVVESAREHGG 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           RLL+RLAGV DR+ AD LRGTVF+VD+ +LP ID+PD +YDH+LEG+ V TV    VG V
Sbjct: 61  RLLLRLAGVTDRDSADALRGTVFVVDSDDLPPIDEPDTYYDHQLEGLHVRTVAGHDVGVV 120

Query: 120 AEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDLA 173
           AEVLHTA GE+LAV+  +GG E LVPFVGAIVTSVS  +  + IDPPEGLLDLA
Sbjct: 121 AEVLHTAAGELLAVRRGDGG-EALVPFVGAIVTSVSLDDRVVEIDPPEGLLDLA 173


>sp|Q73VN8|RIMM_MYCPA Tax_Id=1770 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium paratuberculosis]
          Length = 175

 Score =  229 bits (585), Expect = 7e-59
 Identities = 120/175 (68%), Positives = 138/175 (78%), Gaps = 3/175 (1%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-RSGAEREYTIESVRAHGG 59
           M+L VGRVVKAHGISGE+VVEIRTDDP ARFAPG  LR +P R G ER   IES R HGG
Sbjct: 1   MELTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPERSCVIESAREHGG 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           RLLVRLAGV DR+ AD LRGT+F+VD+AELP ID+PD +YDH+LEG++V T     VG V
Sbjct: 61  RLLVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGRRVGAV 120

Query: 120 AEVLHTAGGEILAVKADEGG--REILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           AEVLHTA GE+LAV+ D  G  RE+LVPFV AIVT+VS  +  I IDPP+GLLDL
Sbjct: 121 AEVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLDDGLIEIDPPDGLLDL 175


>sp|A0QJ46|RIMM_MYCA1 Tax_Id=243243 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium avium]
          Length = 175

 Score =  229 bits (585), Expect = 7e-59
 Identities = 120/175 (68%), Positives = 138/175 (78%), Gaps = 3/175 (1%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-RSGAEREYTIESVRAHGG 59
           M+L VGRVVKAHGISGE+VVEIRTDDP ARFAPG  LR +P R G ER   IES R HGG
Sbjct: 1   MELTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPERSCVIESAREHGG 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           RLLVRLAGV DR+ AD LRGT+F+VD+AELP ID+PD +YDH+LEG++V T     VG V
Sbjct: 61  RLLVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGQRVGAV 120

Query: 120 AEVLHTAGGEILAVKADEGG--REILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           AEVLHTA GE+LAV+ D  G  RE+LVPFV AIVT+VS  +  I IDPP+GLLDL
Sbjct: 121 AEVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLDDGLIEIDPPDGLLDL 175


>sp|B1MDI4|RIMM_MYCA9 Tax_Id=561007 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium abscessus]
          Length = 173

 Score =  229 bits (583), Expect = 1e-58
 Identities = 113/174 (64%), Positives = 141/174 (81%), Gaps = 2/174 (1%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGR-PRSGAEREYTIESVRAHGG 59
           M+LVVGR+ +AHG++GE+ VE+RTDDP+ RFA G+VL GR PR G  R +T+ESVR H G
Sbjct: 1   MELVVGRIARAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGSRRFTVESVREHSG 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           RLL+R AGV+DR+ AD LRGT+F+VDT +LP I+DPDEFYDH+LEG+ V T+D A VG V
Sbjct: 61  RLLIRFAGVSDRDAADALRGTLFMVDTTDLPPIEDPDEFYDHQLEGLAVRTLDGAAVGTV 120

Query: 120 AEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDLA 173
           +EVLHT GGE+L+V+  E  REILVPFV AIVTS+S  +  I IDPPEGLLDL+
Sbjct: 121 SEVLHTPGGELLSVRGSE-RREILVPFVSAIVTSISLADKVIEIDPPEGLLDLS 173


>sp|Q5YS37|RIMM_NOCFA Tax_Id=37329 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Nocardia farcinica]
          Length = 174

 Score =  224 bits (571), Expect = 3e-57
 Identities = 114/172 (66%), Positives = 136/172 (79%), Gaps = 1/172 (0%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGR-PRSGAEREYTIESVRAHGG 59
           M+LVVGRV K+HG+ GE+VVE+RTDDP+ARFA G VLRGR PRS   RE+T+ES R H G
Sbjct: 1   MELVVGRVAKSHGVRGELVVEVRTDDPDARFAEGTVLRGRLPRSTEVREFTVESAREHSG 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           RLLV LAGV DR+ AD LRGT+F+VD+AELP  DDPDEFYDHELEG+ V     A +G V
Sbjct: 61  RLLVSLAGVDDRSAADALRGTLFVVDSAELPPSDDPDEFYDHELEGLSVRDTAGAVLGTV 120

Query: 120 AEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLD 171
            EVLH+A GE+L+++A E GREIL+PFV AIV +VS     +VIDPPEGLLD
Sbjct: 121 TEVLHSAAGELLSMRAAEDGREILIPFVTAIVPTVSVAEGYVVIDPPEGLLD 172


>sp|B2HJL4|RIMM_MYCMM Tax_Id=216594 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium marinum]
          Length = 174

 Score =  218 bits (556), Expect = 2e-55
 Identities = 113/174 (64%), Positives = 135/174 (77%), Gaps = 4/174 (2%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRPR--SGAEREYTIESVRAHG 58
           M+LV+GRVVKAHGI+GEVVVEIRTD+P+ RF PGA LR +     G  R Y IE VR HG
Sbjct: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60

Query: 59  GRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGK 118
            RLLVRLAGV DR+ AD LRG++F++D+A+LP ID+PD +YDH+LEG+RV T     VG 
Sbjct: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120

Query: 119 VAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VAEVLHT  GE+LAVK D G  E+LVPFVGAIVTSVS  +  + IDPP+GLLDL
Sbjct: 121 VAEVLHTGAGELLAVKCDSG--EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172


>sp|A0PQ65|RIMM_MYCUA Tax_Id=362242 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium ulcerans]
          Length = 174

 Score =  217 bits (552), Expect = 5e-55
 Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 4/174 (2%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRPR--SGAEREYTIESVRAHG 58
           M+LV+GRVVKAHGI+GEVVVEIRTD+P+ RF PGA LR +     G  R Y IE VR HG
Sbjct: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60

Query: 59  GRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGK 118
            RLLVRLAGV DR+ AD LRG++F++D+A+LP I++PD +YDH+LEG+RV T     VG 
Sbjct: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIEEPDTYYDHQLEGLRVRTTAGQDVGV 120

Query: 119 VAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VAEVLHT  GE+LAVK D G  E+LVPFVGAIVTSVS  +  + IDPP+GLLDL
Sbjct: 121 VAEVLHTGAGELLAVKCDSG--EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172


>tr|C3JLT7|C3JLT7_RHOER Tax_Id=596309 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Rhodococcus erythropolis SK121]
          Length = 190

 Score =  216 bits (550), Expect = 8e-55
 Identities = 108/173 (62%), Positives = 136/173 (78%), Gaps = 2/173 (1%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGR-PRSGAEREYTIESVRAHGG 59
           M+LVVGRV K+HGI GE+VVE+RTD+PE RFA G+VLRGR PR    + YT+E+ R H G
Sbjct: 1   MELVVGRVAKSHGIKGELVVEVRTDEPEDRFAVGSVLRGRKPRESTLKSYTVEAARDHSG 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           RLL+RL GV+DR  AD LRGT+F++D++EL   DDPDEFYDHELEG++VV  D A VG V
Sbjct: 61  RLLLRLEGVSDRGDADALRGTLFVIDSSELEPSDDPDEFYDHELEGLKVVLTDGAEVGSV 120

Query: 120 AEVLHTAGGEILAV-KADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLD 171
            EVLH+A GE+L++ +A E   E+L+PFV AIVTSVS  +  +VI+PPEGLLD
Sbjct: 121 IEVLHSAAGELLSIRRAGETSGELLIPFVAAIVTSVSIADGVVVIEPPEGLLD 173


>sp|O33016|RIMM_MYCLE Tax_Id=1769 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium leprae]
          Length = 179

 Score =  216 bits (549), Expect = 1e-54
 Identities = 108/174 (62%), Positives = 135/174 (77%), Gaps = 4/174 (2%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGR--PRSGAEREYTIESVRAHG 58
           ++L +GRVVKAHGI GEVVVEIRTDDP +RF PG +LR +  PR G ER YT+   R HG
Sbjct: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67

Query: 59  GRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGK 118
            RLLVRLAGV+DR+ AD LRG++F++D+ +LP ID+PD +YDH+LEG++V T+    VG 
Sbjct: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127

Query: 119 VAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VAEVLHTA GE+LAV+ D G  E+LVPFVGAIV  VS  +  + IDPP+GLLDL
Sbjct: 128 VAEVLHTAAGELLAVRCDSG--EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179


>sp|B8ZRW7|RIMM_MYCLB Tax_Id=561304 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium leprae]
          Length = 179

 Score =  216 bits (549), Expect = 1e-54
 Identities = 108/174 (62%), Positives = 135/174 (77%), Gaps = 4/174 (2%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGR--PRSGAEREYTIESVRAHG 58
           ++L +GRVVKAHGI GEVVVEIRTDDP +RF PG +LR +  PR G ER YT+   R HG
Sbjct: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67

Query: 59  GRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGK 118
            RLLVRLAGV+DR+ AD LRG++F++D+ +LP ID+PD +YDH+LEG++V T+    VG 
Sbjct: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127

Query: 119 VAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VAEVLHTA GE+LAV+ D G  E+LVPFVGAIV  VS  +  + IDPP+GLLDL
Sbjct: 128 VAEVLHTAAGELLAVRCDSG--EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179


>sp|C0ZXR9|RIMM_RHOE4 Tax_Id=234621 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Rhodococcus erythropolis]
          Length = 190

 Score =  212 bits (539), Expect = 2e-53
 Identities = 105/173 (60%), Positives = 134/173 (77%), Gaps = 2/173 (1%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGR-PRSGAEREYTIESVRAHGG 59
           M+LVVGRV K+HGI GE+VVE+RTD+PE RFA G+VLRGR PR    + YT+E+ R H G
Sbjct: 1   MELVVGRVAKSHGIKGELVVEVRTDEPEDRFAVGSVLRGRKPRESTLKSYTVEAARDHSG 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           RLL+RL GV+DR  AD LRGT+F++D++EL   DDPDEFYDHELEG++VV  D   VG V
Sbjct: 61  RLLLRLEGVSDRGDADALRGTLFVIDSSELEPSDDPDEFYDHELEGLKVVLTDGTEVGSV 120

Query: 120 AEVLHTAGGEILAV-KADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLD 171
            EVLH+A GE+L++ +  E   E+L+PFV AIVTSVS  +  ++I+PPEGLLD
Sbjct: 121 IEVLHSAAGELLSIRRTGETSGELLIPFVAAIVTSVSIADGVVMIEPPEGLLD 173


>sp|Q0S2C6|RIMM_RHOSR Tax_Id=101510 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Rhodococcus sp.]
          Length = 183

 Score =  209 bits (531), Expect = 1e-52
 Identities = 107/173 (61%), Positives = 131/173 (75%), Gaps = 2/173 (1%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRG-RPRSGAEREYTIESVRAHGG 59
           M+LVVGRV K+HGI GE+VVE+RTD+PE RFA GAVLRG +PR      YT+E+ R H G
Sbjct: 1   MELVVGRVAKSHGIKGEIVVEVRTDEPEDRFAVGAVLRGHKPREQTVSTYTVEAARDHSG 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           RLL+RL GV+DR  AD LRGT+F++D+AEL   DDPDEFYDHELEG+ V   D   VG V
Sbjct: 61  RLLLRLEGVSDRTAADALRGTLFVIDSAELEPSDDPDEFYDHELEGLSVRLADGTEVGTV 120

Query: 120 AEVLHTAGGEILAV-KADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLD 171
            EVLH+A GE+L++ +A +   E+LVPFV AIVTSVS  +   +IDPPEGLLD
Sbjct: 121 IEVLHSAAGELLSIRRAGDQSGELLVPFVAAIVTSVSVADGVALIDPPEGLLD 173


>sp|C1B2R9|RIMM_RHOOB Tax_Id=632772 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Rhodococcus opacus]
          Length = 183

 Score =  209 bits (531), Expect = 1e-52
 Identities = 107/173 (61%), Positives = 130/173 (75%), Gaps = 2/173 (1%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRG-RPRSGAEREYTIESVRAHGG 59
           M+LVVGRV K+HGI GE+VVE+RTD+PE RFA GAVLRG +PR      Y +E+ R H G
Sbjct: 1   MELVVGRVAKSHGIKGEIVVEVRTDEPEDRFAVGAVLRGHKPREQTVNTYRVEAAREHSG 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           RLL+RL GV DR  AD LRGT+F++D+AEL   DDPDEFYDHELEG+ V   D   +G V
Sbjct: 61  RLLLRLEGVPDRTAADALRGTLFVIDSAELVPSDDPDEFYDHELEGLSVRLADGTELGAV 120

Query: 120 AEVLHTAGGEILAV-KADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLD 171
            EVLH+A GE+L++ +A E   E+LVPFV AIVTSVS  +  +VIDPPEGLLD
Sbjct: 121 IEVLHSAAGELLSIRRAGEQSGELLVPFVAAIVTSVSVADGVVVIDPPEGLLD 173


>tr|D5UYD3|D5UYD3_TSUPA Tax_Id=521096 SubName: Full=16S rRNA
           processing protein RimM;[Tsukamurella paurometabola DSM
           20162]
          Length = 173

 Score =  208 bits (530), Expect = 2e-52
 Identities = 108/172 (62%), Positives = 129/172 (75%), Gaps = 2/172 (1%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGR-PRSGAEREYTIESVRAHGG 59
           M+LVVGRV K+HGI GE+VV++RTD PE RFA GAVL GR PR+   + YT+ + R H G
Sbjct: 1   MELVVGRVAKSHGIRGEIVVDVRTDSPELRFADGAVLTGRRPRAKDTQTYTVAASREHSG 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           RLLVRL GV DR  ADELRGT+F++D+A++   DDPDEFYDHELEG+ V T D   VG +
Sbjct: 61  RLLVRLEGVTDRTAADELRGTLFVIDSADVQPSDDPDEFYDHELEGLAVRTADGTEVGVI 120

Query: 120 AEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLD 171
           AEVLH  GGE+L+VKA + GREIL+PFV AIV  V      I IDPPEGLLD
Sbjct: 121 AEVLHPPGGELLSVKAPD-GREILIPFVTAIVPVVDVAGGFIEIDPPEGLLD 171


>sp|P66653|RIMM_MYCTU Tax_Id=1773 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium tuberculosis]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>sp|A5U6R2|RIMM_MYCTA Tax_Id=419947 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium tuberculosis]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>sp|C1AG22|RIMM_MYCBT Tax_Id=561275 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium bovis]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>sp|A1KMQ1|RIMM_MYCBP Tax_Id=410289 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium bovis]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>sp|P66654|RIMM_MYCBO Tax_Id=1765 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium bovis]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|C7MY86|C7MY86_SACVD Tax_Id=471857 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Saccharomonospora viridis]
          Length = 174

 Score =  204 bits (519), Expect = 3e-51
 Identities = 103/174 (59%), Positives = 122/174 (70%), Gaps = 2/174 (1%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRPRSGAEREYTIESVRAHGGR 60
           M +VVGR+VK HGI GEV V++RTD PE RFAP  VL G+ R G  R  T+ +VR HGGR
Sbjct: 1   MQVVVGRIVKPHGIRGEVAVDVRTDSPEERFAPETVLTGKMRDGRTRPLTVAAVRPHGGR 60

Query: 61  LLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKVA 120
           LLVR   V DR  A+E+RG   L+D  ELP IDDPDEFYDHELEG+R    D   VG V 
Sbjct: 61  LLVRFLEVPDRTAAEEIRGATLLIDVDELPPIDDPDEFYDHELEGLRAELDDGTVVGTVR 120

Query: 121 EVLHTAGGEILAVKADEGG--REILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           EV+H+ GGE+LAV+ +E G  RE+LVPFV AIV  V      IV+DPPEGLLD+
Sbjct: 121 EVVHSPGGELLAVEVEESGRRREVLVPFVAAIVPRVEVDRGRIVLDPPEGLLDV 174


>tr|C6DWE7|C6DWE7_MYCTK Tax_Id=478434 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium tuberculosis]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|A5WRF9|A5WRF9_MYCTF Tax_Id=336982 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium tuberculosis]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|D6G253|D6G253_MYCTU Tax_Id=478435 SubName: Full=16S rRNA
           processing protein rimM;[Mycobacterium tuberculosis KZN
           605]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|D6FP98|D6FP98_MYCTU Tax_Id=611304 SubName: Full=16S rRNA
           processing protein rimM;[Mycobacterium tuberculosis K85]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|D6FKE0|D6FKE0_MYCTU Tax_Id=611303 SubName: Full=16S rRNA
           processing protein RimM;[Mycobacterium tuberculosis
           CPHL_A]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|D6F836|D6F836_MYCTU Tax_Id=611302 SubName: Full=16S rRNA
           processing protein RimM;[Mycobacterium tuberculosis T46]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|D5ZK96|D5ZK96_MYCTU Tax_Id=537210 SubName: Full=16S rRNA
           processing protein rimM;[Mycobacterium tuberculosis T17]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|D5YVJ0|D5YVJ0_MYCTU Tax_Id=515616 SubName: Full=Ribosome
           maturation factor rimM;[Mycobacterium tuberculosis
           02_1987]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|D5YIL4|D5YIL4_MYCTU Tax_Id=520140 SubName: Full=Ribosome
           maturation factor rimM;[Mycobacterium tuberculosis
           EAS054]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|D5Y6Z5|D5Y6Z5_MYCTU Tax_Id=520141 SubName: Full=Ribosome
           maturation factor rimM;[Mycobacterium tuberculosis T85]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|D5XXP8|D5XXP8_MYCTU Tax_Id=515617 SubName: Full=16S rRNA
           processing protein rimM;[Mycobacterium tuberculosis T92]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|A4KKH0|A4KKH0_MYCTU Tax_Id=395095 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium tuberculosis str.
           Haarlem]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|A2VLN6|A2VLN6_MYCTU Tax_Id=348776 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium tuberculosis C]
          Length = 176

 Score =  204 bits (519), Expect = 3e-51
 Identities = 108/177 (61%), Positives = 130/177 (73%), Gaps = 7/177 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRP-----RSGAEREYTIESVR 55
           M+LVVGRVVK+HG++GEVVVEIRTDDP  RFAPG  LR +        G+   Y IESVR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 56  AHGGRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAP 115
            HGGRLLVRLAGVADR+ AD LRG++F++D  +LP ID+PD +YDH+L G+ V T     
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 116 VGKVAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172
           VG V EV+HTA GE+LAVK D    E+LVPFV AIVTSVS  +  + IDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSD--EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|D0LAM4|D0LAM4_GORB4 Tax_Id=526226 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Gordonia bronchialis]
          Length = 172

 Score =  202 bits (515), Expect = 9e-51
 Identities = 107/174 (61%), Positives = 129/174 (74%), Gaps = 4/174 (2%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGR-PRSGAEREYTIESVRAHGG 59
           MDLVVGRV K+HG+ GEVVV+IRTDDPE RFA G VLRGR P+   +RE+T+ + R H G
Sbjct: 1   MDLVVGRVAKSHGVRGEVVVDIRTDDPETRFAVGTVLRGRMPKGAGDREFTVTAARHHAG 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           RLL+ LA V DR  AD LRG +FL+D++E    DDPDEFYDHELEG+ V TVD   VG V
Sbjct: 61  RLLLSLAEVTDRGAADGLRGVLFLIDSSEAQPSDDPDEFYDHELEGVPVSTVDGVSVGVV 120

Query: 120 AEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDLA 173
             VLH  GGE+L+V+  E  RE+LVPFV  IV +V+R+   IVIDPP+GLLD A
Sbjct: 121 ESVLHLPGGELLSVRT-EDRREVLVPFVRQIVPTVTREQ--IVIDPPDGLLDEA 171


>tr|D5PN40|D5PN40_COREQ Tax_Id=525370 (rimM)SubName: Full=16S rRNA
           processing protein RimM;[Rhodococcus equi ATCC 33707]
          Length = 188

 Score =  199 bits (506), Expect = 1e-49
 Identities = 108/178 (60%), Positives = 131/178 (73%), Gaps = 7/178 (3%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGR-PRSGAEREYTIESVRAHGG 59
           M+LVVGRV K+HGI GE+VVE+RTD+PE RFA GA LRGR PR      YT+E+ R H G
Sbjct: 1   MELVVGRVAKSHGIRGELVVEVRTDEPEERFAVGAELRGRKPRENKLHTYTVEAAREHSG 60

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTV---DDA-- 114
           RLL+RL GVADR  AD LRGT+F++DTA+L   DDPDEFYDHELEG+ V       DA  
Sbjct: 61  RLLLRLEGVADRTAADNLRGTLFVIDTADLTPSDDPDEFYDHELEGLTVRMAAGRPDAGT 120

Query: 115 PVGKVAEVLHTAGGEILAVKAD-EGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLD 171
           PVG V EVLH+A GE+L+++ + +   E+LVPFV AIV +VS  +  I IDPPEGLLD
Sbjct: 121 PVGTVLEVLHSAAGELLSIRPEGQTSGELLVPFVTAIVPTVSVADGLIEIDPPEGLLD 178


>tr|C6WEV7|C6WEV7_ACTMD Tax_Id=446462 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Actinosynnema mirum]
          Length = 172

 Score =  177 bits (449), Expect = 4e-43
 Identities = 92/171 (53%), Positives = 113/171 (66%), Gaps = 1/171 (0%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRPRSGAEREYTIESVRAHGGR 60
           MD+VVGRV KAHGI GE+ V++RTD PEARFA G+VL  + R G  R+ T+ + R H GR
Sbjct: 1   MDVVVGRVAKAHGIRGELAVDVRTDSPEARFALGSVLAAKLRDGTSRDLTVAAARYHSGR 60

Query: 61  LLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKVA 120
           LLVR   V  R+ A+ LRGT+ L  T  LP  DDPDEFYDH+LEG+     D   +G V 
Sbjct: 61  LLVRFEEVLTRDVAELLRGTLLLGSTDALPPTDDPDEFYDHQLEGLAAELADGTRIGTVK 120

Query: 121 EVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLD 171
           E++H  GGE+L V   E G E LVPFV  IV +V      +V+DPPEGLLD
Sbjct: 121 EIVHGPGGELL-VLVREDGSEALVPFVRQIVPTVDVAGGRVVVDPPEGLLD 170


>sp|A4FME9|RIMM_SACEN Tax_Id=405948 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Saccharopolyspora erythraea]
          Length = 180

 Score =  176 bits (445), Expect = 1e-42
 Identities = 90/172 (52%), Positives = 115/172 (66%), Gaps = 2/172 (1%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRPRSG-AEREYTIESVRAHGG 59
           + L VGR+V+ HG+ GE+VVE+RTD PE RFAPG+VL  R R   A   +T+ + R H G
Sbjct: 7   LTLAVGRIVRPHGVRGELVVEVRTDSPELRFAPGSVLGMRRRGAHASENFTVAAARPHAG 66

Query: 60  RLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKV 119
           RLLVR  GV  R  A+ELRG +  V   EL + DDPDEF+DH+LEG+RVV       G V
Sbjct: 67  RLLVRAEGVEGREAAEELRGALLTVTADELESTDDPDEFHDHQLEGLRVVFPAGEEAGVV 126

Query: 120 AEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLD 171
           AEV+HT  GE+LAV+  +  RE+LVPFV  +V  +  +   IV+DPPEGL D
Sbjct: 127 AEVVHTPAGELLAVRTPD-DREVLVPFVSEMVPEIDLEAGRIVVDPPEGLFD 177


>tr|C1YHQ2|C1YHQ2_NOCDA Tax_Id=446468 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 170

 Score =  173 bits (439), Expect = 6e-42
 Identities = 93/173 (53%), Positives = 114/173 (65%), Gaps = 4/173 (2%)

Query: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRPRSGAEREYTIESVRAHGGR 60
           M LVVGR+ +AHG+ G+V V++RTDDP ARFA G+VL   P        T+ S R H GR
Sbjct: 1   MRLVVGRIGRAHGVRGDVAVDVRTDDPAARFADGSVLATDPAEAGP--LTVVSTRRHSGR 58

Query: 61  LLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKVA 120
           LLVR  GVADR+ A+ LRGT  LVD+ ++P ++DPDEF+DHEL G+  VT    PVG VA
Sbjct: 59  LLVRFEGVADRDAAEGLRGTALLVDSEDIPPLEDPDEFHDHELIGLAAVTTGAEPVGTVA 118

Query: 121 EVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDLA 173
           +VLH A  + L V     G E+ VPFV A+V  V      IVIDPP GLLDLA
Sbjct: 119 DVLHHA--QDLLVVTTPDGAEVYVPFVAALVPEVDVAGGRIVIDPPPGLLDLA 169


>tr|D1AB16|D1AB16_THECD Tax_Id=471852 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Thermomonospora curvata]
          Length = 172

 Score =  171 bits (432), Expect = 4e-41
 Identities = 90/169 (53%), Positives = 115/169 (68%), Gaps = 4/169 (2%)

Query: 3   LVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRPRSGAEREYTIESVRAHGGRLL 62
           +VVGR+ + HG+ GEV V++RTDDP+ARFAPGAVL   P        T+E  R H GRLL
Sbjct: 6   VVVGRIGRPHGVRGEVTVDVRTDDPDARFAPGAVLDTDPPHLGP--LTVERARWHVGRLL 63

Query: 63  VRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGKVAEV 122
           +R  GV DR  A++LRGT  +VDT +LP ++DPDEF+DHEL G+  VT D  PVG V ++
Sbjct: 64  LRFTGVDDRTAAEKLRGTWLVVDTGDLPPLEDPDEFHDHELIGLTAVTTDGTPVGTVRDI 123

Query: 123 LHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLD 171
           LH A  ++L ++ + GG E LVPFV A+V  V      IVIDPP GLLD
Sbjct: 124 LHYA-QDLLVIRRETGG-EALVPFVAALVPEVDVAGGRIVIDPPPGLLD 170


  Database: Amellifera_nr
    Posted date:  Jul 23, 2010  5:10 AM
  Number of letters in database: 4,236,830,644
  Number of sequences in database:  12,507,864
  
Lambda     K      H
   0.318    0.139    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 12507864
Number of Hits to DB: 1,492,116,408
Number of extensions: 63185487
Number of successful extensions: 163131
Number of sequences better than 10.0: 1930
Number of HSP's gapped: 162210
Number of HSP's successfully gapped: 1934
Length of query: 173
Length of database: 4,236,830,644
Length adjustment: 128
Effective length of query: 45
Effective length of database: 2,635,824,052
Effective search space: 118612082340
Effective search space used: 118612082340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.5 bits)