BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_2649 (303 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0QVP8|A0QVP8_MYCS2 Tax_Id=246196 (truB)SubName: Full=tRNA ps... 556 e-157 sp|Q1BA81|TRUB_MYCSS Tax_Id=164756 (truB)RecName: Full=tRNA pseu... 438 e-121 sp|A1UET1|TRUB_MYCSK Tax_Id=189918 (truB)RecName: Full=tRNA pseu... 438 e-121 sp|A3PY88|TRUB_MYCSJ Tax_Id=164757 (truB)RecName: Full=tRNA pseu... 438 e-121 tr|A1T7J3|A1T7J3_MYCVP Tax_Id=350058 SubName: Full=tRNA pseudour... 429 e-118 tr|A4TCH2|A4TCH2_MYCGI Tax_Id=350054 SubName: Full=tRNA pseudour... 421 e-116 tr|D5PJF1|D5PJF1_9MYCO Tax_Id=525368 (truB)SubName: Full=tRNA ps... 404 e-111 sp|Q73VW3|TRUB_MYCPA Tax_Id=1770 (truB)RecName: Full=tRNA pseudo... 403 e-110 tr|B2HKU5|B2HKU5_MYCMM Tax_Id=216594 (truB)SubName: Full=tRNA ps... 402 e-110 sp|A0QIX1|TRUB_MYCA1 Tax_Id=243243 (truB)RecName: Full=tRNA pseu... 399 e-109 sp|A0PQD9|TRUB_MYCUA Tax_Id=362242 (truB)RecName: Full=tRNA pseu... 396 e-108 sp|B1MD72|TRUB_MYCA9 Tax_Id=561007 (truB)RecName: Full=tRNA pseu... 391 e-107 sp|P62190|TRUB_MYCTU Tax_Id=1773 (truB)RecName: Full=tRNA pseudo... 390 e-106 sp|A5U6E6|TRUB_MYCTA Tax_Id=419947 (truB)RecName: Full=tRNA pseu... 390 e-106 sp|A1KMD6|TRUB_MYCBP Tax_Id=410289 (truB)RecName: Full=tRNA pseu... 390 e-106 sp|P62189|TRUB_MYCBO Tax_Id=1765 (truB)RecName: Full=tRNA pseudo... 390 e-106 tr|C6DX50|C6DX50_MYCTK Tax_Id=478434 SubName: Full=tRNA pseudour... 390 e-106 tr|C1AFQ7|C1AFQ7_MYCBT Tax_Id=561275 (truB)SubName: Full=tRNA ps... 390 e-106 tr|A5WR44|A5WR44_MYCTF Tax_Id=336982 SubName: Full=tRNA pseudour... 390 e-106 tr|D6G2V4|D6G2V4_MYCTU Tax_Id=478435 SubName: Full=tRNA pseudour... 390 e-106 tr|D6FNK0|D6FNK0_MYCTU Tax_Id=611304 SubName: Full=tRNA pseudour... 390 e-106 tr|D6FK19|D6FK19_MYCTU Tax_Id=611303 SubName: Full=tRNA pseudour... 390 e-106 tr|D5ZJX4|D5ZJX4_MYCTU Tax_Id=537210 SubName: Full=tRNA pseudour... 390 e-106 tr|D5Z6X4|D5Z6X4_MYCTU Tax_Id=537209 SubName: Full=tRNA pseudour... 390 e-106 tr|D5YUR5|D5YUR5_MYCTU Tax_Id=515616 SubName: Full=tRNA pseudour... 390 e-106 tr|D5YI94|D5YI94_MYCTU Tax_Id=520140 SubName: Full=tRNA pseudour... 390 e-106 tr|A4KK67|A4KK67_MYCTU Tax_Id=395095 SubName: Full=TRNA pseudour... 390 e-106 tr|A2VLC7|A2VLC7_MYCTU Tax_Id=348776 SubName: Full=TRNA pseudour... 390 e-106 sp|Q9Z5I4|TRUB_MYCLE Tax_Id=1769 (truB)RecName: Full=tRNA pseudo... 374 e-101 tr|B8ZRS9|B8ZRS9_MYCLB Tax_Id=561304 (truB)SubName: Full=tRNA ps... 374 e-101 tr|D5UM65|D5UM65_TSUPA Tax_Id=521096 SubName: Full=tRNA pseudour... 337 1e-90 sp|Q5YSE0|TRUB_NOCFA Tax_Id=37329 (truB)RecName: Full=tRNA pseud... 334 7e-90 tr|D5PMR6|D5PMR6_COREQ Tax_Id=525370 (truB)SubName: Full=tRNA ps... 332 5e-89 tr|D0LBJ3|D0LBJ3_GORB4 Tax_Id=526226 SubName: Full=tRNA pseudour... 331 8e-89 sp|Q0S212|TRUB_RHOSR Tax_Id=101510 (truB)RecName: Full=tRNA pseu... 323 2e-86 tr|C1B320|C1B320_RHOOB Tax_Id=632772 (truB)SubName: Full=tRNA ps... 323 2e-86 tr|C0ZYB2|C0ZYB2_RHOE4 Tax_Id=234621 (truB)SubName: Full=tRNA ps... 322 5e-86 tr|C3JK60|C3JK60_RHOER Tax_Id=596309 (truB)SubName: Full=tRNA ps... 321 8e-86 tr|D5Y7R9|D5Y7R9_MYCTU Tax_Id=520141 SubName: Full=tRNA pseudour... 317 2e-84 tr|C6WDK2|C6WDK2_ACTMD Tax_Id=446462 SubName: Full=tRNA pseudour... 315 3e-84 tr|D3CGF4|D3CGF4_9ACTO Tax_Id=648999 SubName: Full=tRNA pseudour... 314 8e-84 tr|D1SA87|D1SA87_9ACTO Tax_Id=644283 SubName: Full=tRNA pseudour... 314 8e-84 tr|A4FM27|A4FM27_SACEN Tax_Id=405948 SubName: Full=Putative unch... 308 7e-82 tr|C8NU03|C8NU03_9CORY Tax_Id=585529 (truB)SubName: Full=tRNA ps... 306 2e-81 sp|C3PH13|TRUB_CORA7 Tax_Id=548476 (truB)RecName: Full=tRNA pseu... 305 4e-81 >tr|A0QVP8|A0QVP8_MYCS2 Tax_Id=246196 (truB)SubName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-;[Mycobacterium smegmatis] Length = 303 Score = 556 bits (1434), Expect = e-157 Identities = 288/303 (95%), Positives = 288/303 (95%) Query: 1 MSGQARSGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIER 60 MSGQARSGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIER Sbjct: 1 MSGQARSGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIER 60 Query: 61 ATKILGLLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIE 120 ATKILGLLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIE Sbjct: 61 ATKILGLLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIE 120 Query: 121 QVPSAVSAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXX 180 QVPSAVSAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRR Sbjct: 121 QVPSAVSAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRPDDFPDFVDVDVEVD 180 Query: 181 CSSGTYIRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTAC 240 CSSGTYIRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTAC Sbjct: 181 CSSGTYIRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTAC 240 Query: 241 LVGFPRRDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRP 300 LVGFPRRDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRP Sbjct: 241 LVGFPRRDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRP 300 Query: 301 ATL 303 ATL Sbjct: 301 ATL 303 >sp|Q1BA81|TRUB_MYCSS Tax_Id=164756 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium sp.] Length = 297 Score = 438 bits (1126), Expect = e-121 Identities = 230/303 (75%), Positives = 255/303 (84%), Gaps = 6/303 (1%) Query: 1 MSGQARSGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIER 60 MSG +G G+VIVDKPAGMTSHDVVGRCRR+FGTRKVGHAGTLDPMATGVLV+GI+R Sbjct: 1 MSG---AGVGGGIVIVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDR 57 Query: 61 ATKILGLLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIE 120 ATK+LGLLTATDKSY ATIRLG+TTTTEDAEG+VVE PA +TDEQI AVA LRG+I+ Sbjct: 58 ATKLLGLLTATDKSYEATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEID 117 Query: 121 QVPSAVSAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXX 180 QVPSAVSAIKVGGQRAYKLAREGQ+VELAAR VRIDRF+VL IRR Sbjct: 118 QVPSAVSAIKVGGQRAYKLAREGQTVELAARRVRIDRFEVLAIRR---VDGFVDVDVAVD 174 Query: 181 CSSGTYIRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTAC 240 CSSGTYIRALARDVG LGVGGHLT+LRRTRVGR+GLDEA+ LD LA+ P+LS+SLD AC Sbjct: 175 CSSGTYIRALARDVGVTLGVGGHLTLLRRTRVGRFGLDEAYPLDALADEPRLSHSLDEAC 234 Query: 241 LVGFPRRDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRP 300 L+ FPRRDL+ E E TRHGR L PAGIDGVYAA APDG V+ALL+DG RT++VVVLRP Sbjct: 235 LLSFPRRDLTPAEAESTRHGRALAPAGIDGVYAAAAPDGSVLALLEDGPQRTKSVVVLRP 294 Query: 301 ATL 303 ATL Sbjct: 295 ATL 297 >sp|A1UET1|TRUB_MYCSK Tax_Id=189918 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium sp.] Length = 297 Score = 438 bits (1126), Expect = e-121 Identities = 230/303 (75%), Positives = 255/303 (84%), Gaps = 6/303 (1%) Query: 1 MSGQARSGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIER 60 MSG +G G+VIVDKPAGMTSHDVVGRCRR+FGTRKVGHAGTLDPMATGVLV+GI+R Sbjct: 1 MSG---AGVGGGIVIVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDR 57 Query: 61 ATKILGLLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIE 120 ATK+LGLLTATDKSY ATIRLG+TTTTEDAEG+VVE PA +TDEQI AVA LRG+I+ Sbjct: 58 ATKLLGLLTATDKSYEATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEID 117 Query: 121 QVPSAVSAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXX 180 QVPSAVSAIKVGGQRAYKLAREGQ+VELAAR VRIDRF+VL IRR Sbjct: 118 QVPSAVSAIKVGGQRAYKLAREGQTVELAARRVRIDRFEVLAIRR---VDGFVDVDVAVD 174 Query: 181 CSSGTYIRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTAC 240 CSSGTYIRALARDVG LGVGGHLT+LRRTRVGR+GLDEA+ LD LA+ P+LS+SLD AC Sbjct: 175 CSSGTYIRALARDVGVTLGVGGHLTLLRRTRVGRFGLDEAYPLDALADEPRLSHSLDEAC 234 Query: 241 LVGFPRRDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRP 300 L+ FPRRDL+ E E TRHGR L PAGIDGVYAA APDG V+ALL+DG RT++VVVLRP Sbjct: 235 LLSFPRRDLTPAEAESTRHGRALAPAGIDGVYAAAAPDGSVLALLEDGPQRTKSVVVLRP 294 Query: 301 ATL 303 ATL Sbjct: 295 ATL 297 >sp|A3PY88|TRUB_MYCSJ Tax_Id=164757 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium sp.] Length = 297 Score = 438 bits (1126), Expect = e-121 Identities = 230/303 (75%), Positives = 255/303 (84%), Gaps = 6/303 (1%) Query: 1 MSGQARSGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIER 60 MSG +G G+VIVDKPAGMTSHDVVGRCRR+FGTRKVGHAGTLDPMATGVLV+GI+R Sbjct: 1 MSG---AGVGGGIVIVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDR 57 Query: 61 ATKILGLLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIE 120 ATK+LGLLTATDKSY ATIRLG+TTTTEDAEG+VVE PA +TDEQI AVA LRG+I+ Sbjct: 58 ATKLLGLLTATDKSYEATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEID 117 Query: 121 QVPSAVSAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXX 180 QVPSAVSAIKVGGQRAYKLAREGQ+VELAAR VRIDRF+VL IRR Sbjct: 118 QVPSAVSAIKVGGQRAYKLAREGQTVELAARRVRIDRFEVLAIRR---VDGFVDVDVAVD 174 Query: 181 CSSGTYIRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTAC 240 CSSGTYIRALARDVG LGVGGHLT+LRRTRVGR+GLDEA+ LD LA+ P+LS+SLD AC Sbjct: 175 CSSGTYIRALARDVGVTLGVGGHLTLLRRTRVGRFGLDEAYPLDALADEPRLSHSLDEAC 234 Query: 241 LVGFPRRDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRP 300 L+ FPRRDL+ E E TRHGR L PAGIDGVYAA APDG V+ALL+DG RT++VVVLRP Sbjct: 235 LLSFPRRDLTPAEAESTRHGRALAPAGIDGVYAAAAPDGSVLALLEDGPQRTKSVVVLRP 294 Query: 301 ATL 303 ATL Sbjct: 295 ATL 297 >tr|A1T7J3|A1T7J3_MYCVP Tax_Id=350058 SubName: Full=tRNA pseudouridine synthase B; EC=4.2.1.70;[Mycobacterium vanbaalenii] Length = 302 Score = 429 bits (1103), Expect = e-118 Identities = 222/298 (74%), Positives = 248/298 (83%), Gaps = 3/298 (1%) Query: 6 RSGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKIL 65 R+ PGLV+VDKP GMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLV+GIERATKIL Sbjct: 8 RNNPAPGLVVVDKPGGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVVGIERATKIL 67 Query: 66 GLLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSA 125 GLLTATDKSYAATIRLG+TT+TEDAEGEV++ V A VTD QI AA+A LRG I+Q+PSA Sbjct: 68 GLLTATDKSYAATIRLGQTTSTEDAEGEVLQSVSAAEVTDAQIEAAIAPLRGPIDQIPSA 127 Query: 126 VSAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGT 185 VSAIK+ G+RAY++ R+GQ+VELAARPVRIDRF+VL++RR CSSGT Sbjct: 128 VSAIKIAGKRAYQMVRDGQTVELAARPVRIDRFEVLEVRR---DGELVDVDVAVDCSSGT 184 Query: 186 YIRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFP 245 YIRALARDVGAALGVGGHLT LRRTRVG +GL++A TLDELAE P+LSYSLD ACL F Sbjct: 185 YIRALARDVGAALGVGGHLTALRRTRVGGFGLEQARTLDELAEAPRLSYSLDEACLRAFA 244 Query: 246 RRDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RRD++ E E HGR L AGIDGVYAATAPDGRVIALL D RTR+VVVLRPATL Sbjct: 245 RRDITEAEAESASHGRALPVAGIDGVYAATAPDGRVIALLSDEGDRTRSVVVLRPATL 302 >tr|A4TCH2|A4TCH2_MYCGI Tax_Id=350054 SubName: Full=tRNA pseudouridine synthase B; EC=4.2.1.70;[Mycobacterium gilvum] Length = 294 Score = 421 bits (1082), Expect = e-116 Identities = 216/295 (73%), Positives = 245/295 (83%), Gaps = 3/295 (1%) Query: 9 AEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLL 68 AEPGLV+VDKP GMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLL Sbjct: 3 AEPGLVVVDKPGGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLL 62 Query: 69 TATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSA 128 TATDKSY AT+RLG+TT+TED EGE++ V A +VTDEQI A+A LRG IEQVPSAVSA Sbjct: 63 TATDKSYTATLRLGQTTSTEDTEGELLHQVSAAQVTDEQIERAIAPLRGAIEQVPSAVSA 122 Query: 129 IKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTYIR 188 IK+ G+RAY++ R+G+ VE+ ARPVRIDRF+VL +RR CSSGTYIR Sbjct: 123 IKIAGKRAYQMVRDGEQVEIPARPVRIDRFEVLAVRR---NGDVVDVDVVVDCSSGTYIR 179 Query: 189 ALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPRRD 248 ALARDVGAALGVGGHLT LRRTRVG +GLD+A TL++LA+ +LSYSLD ACL FPRR+ Sbjct: 180 ALARDVGAALGVGGHLTALRRTRVGGFGLDQARTLEQLADAAELSYSLDEACLHAFPRRE 239 Query: 249 LSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 L+ E D HGR L PAGIDGVYAATAPDGRV+ALL+D RTR+VVV+RPATL Sbjct: 240 LTDAEVVDAGHGRSLAPAGIDGVYAATAPDGRVMALLEDAGPRTRSVVVIRPATL 294 >tr|D5PJF1|D5PJF1_9MYCO Tax_Id=525368 (truB)SubName: Full=tRNA pseudouridine synthase B; EC=4.2.1.70;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 299 Score = 404 bits (1039), Expect = e-111 Identities = 212/299 (70%), Positives = 245/299 (81%), Gaps = 3/299 (1%) Query: 5 ARSGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKI 64 ++S + G+V+VDKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIG++RATKI Sbjct: 2 SQSPSGRGIVVVDKPAGMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVDRATKI 61 Query: 65 LGLLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPS 124 LGLLT KSYAATIRLG+TT+TEDAEGEV+ V A +T E I AAVA LRGDIEQVPS Sbjct: 62 LGLLTGASKSYAATIRLGQTTSTEDAEGEVLHSVSAAHLTREAIGAAVAGLRGDIEQVPS 121 Query: 125 AVSAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSG 184 AVSAIKV G+RAY+L REGQ+VELAARPVRIDRF+V D+R CSSG Sbjct: 122 AVSAIKVEGRRAYRLVREGQAVELAARPVRIDRFEVCDVR---PAGQLVDVDVEVDCSSG 178 Query: 185 TYIRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGF 244 TY+RALARDVGAALGVGGHLT LRRTRVGR+ L++A +LD+LAE P LS +LD ACL+ F Sbjct: 179 TYVRALARDVGAALGVGGHLTALRRTRVGRFTLEQARSLDDLAERPGLSLTLDEACLLMF 238 Query: 245 PRRDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 PRR+LSAEE + T +GRPL AGIDGVYAA DGRVIALL+D RT++VVV+RPATL Sbjct: 239 PRRELSAEEADATANGRPLAAAGIDGVYAACDADGRVIALLRDEGTRTKSVVVIRPATL 297 >sp|Q73VW3|TRUB_MYCPA Tax_Id=1770 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium paratuberculosis] Length = 293 Score = 403 bits (1036), Expect = e-110 Identities = 210/293 (71%), Positives = 239/293 (81%), Gaps = 3/293 (1%) Query: 11 PGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTA 70 PGLV+VDKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLV+G+ERATKILGLLTA Sbjct: 4 PGLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTA 63 Query: 71 TDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIK 130 KSY+ATIRLG+ T+T+DAEG+V V AR +T + I AAV LRGDI QVPS VSAIK Sbjct: 64 AAKSYSATIRLGQATSTDDAEGDVARSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIK 123 Query: 131 VGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTYIRAL 190 V G+RAYKL REGQ+VEL ARPVRIDRF+V +R CSSGTY+RAL Sbjct: 124 VAGKRAYKLVREGQAVELPARPVRIDRFEVRGLR---AAGACVDVDVEVDCSSGTYVRAL 180 Query: 191 ARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPRRDLS 250 ARD+GAALGVGGHLT LRRTRVGR+GL++A+ LDELAE P+LSYSLD ACL+ F RRDLS Sbjct: 181 ARDLGAALGVGGHLTALRRTRVGRFGLEQAYGLDELAECPRLSYSLDEACLLIFGRRDLS 240 Query: 251 AEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 A+E E +GR L AGIDGVYAA APDGRVIALL+D RT++VVVLRPATL Sbjct: 241 ADEAEAAGNGRALAAAGIDGVYAACAPDGRVIALLRDEGARTKSVVVLRPATL 293 >tr|B2HKU5|B2HKU5_MYCMM Tax_Id=216594 (truB)SubName: Full=tRNA pseudouridine synthase B TruB;[Mycobacterium marinum] Length = 301 Score = 402 bits (1033), Expect = e-110 Identities = 209/299 (69%), Positives = 242/299 (80%), Gaps = 3/299 (1%) Query: 5 ARSGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKI 64 A G PG+V+VDKP MTSHDVVGRCRR+FGTR+VGHAGTLDPMATGVLVIGIERATKI Sbjct: 6 AGPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKI 65 Query: 65 LGLLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPS 124 LGLLTAT KSYAATIRLG+TT+TEDAEGE + V A V E I AA+ DL GDI QVPS Sbjct: 66 LGLLTATSKSYAATIRLGQTTSTEDAEGEPLASVSAEHVAPEAIAAAILDLTGDIRQVPS 125 Query: 125 AVSAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSG 184 AVSAIKV G+RAY+LAREGQ+VELAARPVRIDRF+++D+RR CSSG Sbjct: 126 AVSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRR---GADVIDIDVEVDCSSG 182 Query: 185 TYIRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGF 244 TYIRALARD+GAAL VGGHLT LRRTRVG + L +A +LDELAE P LS +LD ACL+ F Sbjct: 183 TYIRALARDLGAALDVGGHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMF 242 Query: 245 PRRDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 PRRDL+ +E++ +GRPL PAGIDG+YAA+ DGRVIALL+D RT++VVV+RPAT+ Sbjct: 243 PRRDLTVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 >sp|A0QIX1|TRUB_MYCA1 Tax_Id=243243 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium avium] Length = 309 Score = 399 bits (1024), Expect = e-109 Identities = 211/304 (69%), Positives = 241/304 (79%), Gaps = 14/304 (4%) Query: 11 PGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTA 70 PGLV+VDKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLV+G+ERATKILGLLTA Sbjct: 4 PGLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTA 63 Query: 71 TDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIK 130 KSY+ATIRLG+ T+T+DAEG+VV V AR +T + I AAV LRGDI QVPS VSAIK Sbjct: 64 AAKSYSATIRLGQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIK 123 Query: 131 VGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTYIRAL 190 V G+RAYKL REGQ+VEL ARPVRIDRF+V D+R CSSGTY+RAL Sbjct: 124 VAGKRAYKLVREGQAVELPARPVRIDRFEVRDLR---AAGECVDVDVEVDCSSGTYVRAL 180 Query: 191 ARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPRRDLS 250 ARD+GAALGVGGHLT LRRTRVGR+GL++A+ LDELAE P+LSYSLD ACL+ F RRDLS Sbjct: 181 ARDLGAALGVGGHLTALRRTRVGRFGLEQAYGLDELAECPRLSYSLDEACLLIFGRRDLS 240 Query: 251 AEETE-----------DTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLR 299 A+E E +GR L AGIDGVYAA APDGRVIALL+D RTR+VVV+R Sbjct: 241 ADEAEAAGNGRALAAAAAGNGRALAAAGIDGVYAACAPDGRVIALLRDEGARTRSVVVIR 300 Query: 300 PATL 303 PAT+ Sbjct: 301 PATM 304 >sp|A0PQD9|TRUB_MYCUA Tax_Id=362242 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium ulcerans] Length = 301 Score = 396 bits (1018), Expect = e-108 Identities = 206/299 (68%), Positives = 240/299 (80%), Gaps = 3/299 (1%) Query: 5 ARSGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKI 64 A G PG+V+VDKP MTSHDVVGRCRR+FGTR++GHAGTLDPMATGVLVIGIERATKI Sbjct: 6 AGPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRLGHAGTLDPMATGVLVIGIERATKI 65 Query: 65 LGLLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPS 124 LGLL AT KSYAATIRLG+TT+TEDAEGE + V A V E I AA+ DL GDI QVPS Sbjct: 66 LGLLIATSKSYAATIRLGQTTSTEDAEGEPLASVSAEHVAPEAIAAAILDLTGDIRQVPS 125 Query: 125 AVSAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSG 184 AVSAIKV G+RAY+LAREGQ+VELAARPVRIDRF+++D+RR CSSG Sbjct: 126 AVSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRR---GADVIDIDVEVDCSSG 182 Query: 185 TYIRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGF 244 TYIRALARD+GAAL VGGHLT LRRTRV + L +A +LDELAE P LS +LD ACL+ F Sbjct: 183 TYIRALARDLGAALDVGGHLTSLRRTRVSHFDLSQAASLDELAERPALSLTLDQACLLMF 242 Query: 245 PRRDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 PRRDL+ +E++ +GRPL PAGIDG+YAA+ DGRVIALL+D RT++VVV+RPAT+ Sbjct: 243 PRRDLTVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 >sp|B1MD72|TRUB_MYCA9 Tax_Id=561007 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium abscessus] Length = 298 Score = 391 bits (1005), Expect = e-107 Identities = 208/292 (71%), Positives = 230/292 (78%), Gaps = 2/292 (0%) Query: 12 GLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTAT 71 GLVIVDKPAGMTSHDVV RCRR+F TRKVGHAGTLDPMATGVLVIGIERATKI+GLLT T Sbjct: 9 GLVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLT 68 Query: 72 DKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIKV 131 KSYAATIR G++T+T+DAEGEV++ + A +T+ I AAVA LRGDI QVPS+VSAIKV Sbjct: 69 TKSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKV 128 Query: 132 GGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTYIRALA 191 GQRAYKLAREGQSVELAARPVRI RFDVL +R CSSGTYIRALA Sbjct: 129 DGQRAYKLAREGQSVELAARPVRISRFDVLAVR--GSGEDLIDVDVEIDCSSGTYIRALA 186 Query: 192 RDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPRRDLSA 251 RD GAALGVGGHLT LRRTRVG +GLD A TL+ELA+ L+ LD+AC GFPRRDL A Sbjct: 187 RDAGAALGVGGHLTALRRTRVGDFGLDRARTLEELADGATLTLDLDSACRQGFPRRDLDA 246 Query: 252 EETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 E + R+GRPL PAGI+G YAA D RVIALL D RT +VVVLRPA L Sbjct: 247 AEVDAVRNGRPLAPAGIEGTYAAVDADDRVIALLADKGSRTTSVVVLRPANL 298 >sp|P62190|TRUB_MYCTU Tax_Id=1773 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=MTB-TRUB;[Mycobacterium tuberculosis] Length = 298 Score = 390 bits (1002), Expect = e-106 Identities = 203/297 (68%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct: 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct: 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTY 186 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR CSSGTY Sbjct: 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 Query: 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 Query: 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct: 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >sp|A5U6E6|TRUB_MYCTA Tax_Id=419947 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium tuberculosis] Length = 298 Score = 390 bits (1002), Expect = e-106 Identities = 203/297 (68%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct: 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct: 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTY 186 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR CSSGTY Sbjct: 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 Query: 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 Query: 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct: 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >sp|A1KMD6|TRUB_MYCBP Tax_Id=410289 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium bovis] Length = 298 Score = 390 bits (1002), Expect = e-106 Identities = 203/297 (68%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct: 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct: 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTY 186 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR CSSGTY Sbjct: 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 Query: 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 Query: 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct: 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >sp|P62189|TRUB_MYCBO Tax_Id=1765 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium bovis] Length = 298 Score = 390 bits (1002), Expect = e-106 Identities = 203/297 (68%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct: 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct: 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTY 186 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR CSSGTY Sbjct: 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 Query: 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 Query: 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct: 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|C6DX50|C6DX50_MYCTK Tax_Id=478434 SubName: Full=tRNA pseudouridine synthase B truB;[Mycobacterium tuberculosis] Length = 298 Score = 390 bits (1002), Expect = e-106 Identities = 203/297 (68%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct: 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct: 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTY 186 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR CSSGTY Sbjct: 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 Query: 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 Query: 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct: 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|C1AFQ7|C1AFQ7_MYCBT Tax_Id=561275 (truB)SubName: Full=tRNA pseudouridine synthase B; EC=4.2.1.70;[Mycobacterium bovis] Length = 298 Score = 390 bits (1002), Expect = e-106 Identities = 203/297 (68%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct: 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct: 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTY 186 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR CSSGTY Sbjct: 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 Query: 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 Query: 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct: 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|A5WR44|A5WR44_MYCTF Tax_Id=336982 SubName: Full=tRNA pseudouridine synthase B truB;[Mycobacterium tuberculosis] Length = 298 Score = 390 bits (1002), Expect = e-106 Identities = 203/297 (68%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct: 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct: 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTY 186 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR CSSGTY Sbjct: 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 Query: 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 Query: 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct: 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|D6G2V4|D6G2V4_MYCTU Tax_Id=478435 SubName: Full=tRNA pseudouridine synthase B truB;[Mycobacterium tuberculosis KZN 605] Length = 298 Score = 390 bits (1002), Expect = e-106 Identities = 203/297 (68%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct: 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct: 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTY 186 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR CSSGTY Sbjct: 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 Query: 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 Query: 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct: 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|D6FNK0|D6FNK0_MYCTU Tax_Id=611304 SubName: Full=tRNA pseudouridine synthase B truB;[Mycobacterium tuberculosis K85] Length = 298 Score = 390 bits (1002), Expect = e-106 Identities = 203/297 (68%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct: 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct: 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTY 186 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR CSSGTY Sbjct: 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 Query: 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 Query: 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct: 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|D6FK19|D6FK19_MYCTU Tax_Id=611303 SubName: Full=tRNA pseudouridine synthase B truB;[Mycobacterium tuberculosis CPHL_A] Length = 298 Score = 390 bits (1002), Expect = e-106 Identities = 203/297 (68%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct: 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct: 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTY 186 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR CSSGTY Sbjct: 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 Query: 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 Query: 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct: 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|D5ZJX4|D5ZJX4_MYCTU Tax_Id=537210 SubName: Full=tRNA pseudouridine synthase B truB;[Mycobacterium tuberculosis T17] Length = 298 Score = 390 bits (1002), Expect = e-106 Identities = 203/297 (68%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct: 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct: 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTY 186 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR CSSGTY Sbjct: 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 Query: 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 Query: 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct: 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|D5Z6X4|D5Z6X4_MYCTU Tax_Id=537209 SubName: Full=tRNA pseudouridine synthase B truB;[Mycobacterium tuberculosis GM 1503] Length = 298 Score = 390 bits (1002), Expect = e-106 Identities = 203/297 (68%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct: 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct: 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTY 186 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR CSSGTY Sbjct: 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 Query: 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 Query: 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct: 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|D5YUR5|D5YUR5_MYCTU Tax_Id=515616 SubName: Full=tRNA pseudouridine synthase B;[Mycobacterium tuberculosis 02_1987] Length = 298 Score = 390 bits (1002), Expect = e-106 Identities = 203/297 (68%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct: 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct: 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTY 186 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR CSSGTY Sbjct: 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 Query: 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 Query: 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct: 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|D5YI94|D5YI94_MYCTU Tax_Id=520140 SubName: Full=tRNA pseudouridine synthase B;[Mycobacterium tuberculosis EAS054] Length = 298 Score = 390 bits (1002), Expect = e-106 Identities = 203/297 (68%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct: 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct: 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTY 186 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR CSSGTY Sbjct: 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 Query: 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 Query: 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct: 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|A4KK67|A4KK67_MYCTU Tax_Id=395095 SubName: Full=TRNA pseudouridine synthase B truB;[Mycobacterium tuberculosis str. Haarlem] Length = 298 Score = 390 bits (1002), Expect = e-106 Identities = 203/297 (68%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct: 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct: 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTY 186 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR CSSGTY Sbjct: 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 Query: 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 Query: 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct: 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|A2VLC7|A2VLC7_MYCTU Tax_Id=348776 SubName: Full=TRNA pseudouridine synthase B truB;[Mycobacterium tuberculosis C] Length = 298 Score = 390 bits (1002), Expect = e-106 Identities = 203/297 (68%), Positives = 238/297 (80%), Gaps = 3/297 (1%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct: 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct: 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTY 186 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR CSSGTY Sbjct: 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 Query: 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct: 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 Query: 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct: 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >sp|Q9Z5I4|TRUB_MYCLE Tax_Id=1769 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium leprae] Length = 320 Score = 374 bits (959), Expect = e-101 Identities = 193/296 (65%), Positives = 231/296 (78%), Gaps = 2/296 (0%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 +G PG+V++DKP+GMTSHDVV RCRR+F TR+VGHAGTLDPMATGVLV+G++RATKILG Sbjct: 8 AGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILG 67 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LL K Y ATIRLG+TT+TEDAEGE+++ V AR VTDE I A+ LRGDI+QVPSAV Sbjct: 68 LLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAV 127 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIR--RXXXXXXXXXXXXXXXCSSG 184 SAIKV G+RAY+L REG VEL ARPVRIDRF+VL +R CSSG Sbjct: 128 SAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSG 187 Query: 185 TYIRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGF 244 TYIRALARD+G A GVGGHLT LRRTRVGR+ LD+A +L++LAE P+LS +LD CL+ F Sbjct: 188 TYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMF 247 Query: 245 PRRDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRP 300 PRRDL+ E E T +GRP+ AGIDG+YAA+ DGRVIALL+D RT++VVVL P Sbjct: 248 PRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303 >tr|B8ZRS9|B8ZRS9_MYCLB Tax_Id=561304 (truB)SubName: Full=tRNA pseudouridine 55 synthase;[Mycobacterium leprae] Length = 320 Score = 374 bits (959), Expect = e-101 Identities = 193/296 (65%), Positives = 231/296 (78%), Gaps = 2/296 (0%) Query: 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 +G PG+V++DKP+GMTSHDVV RCRR+F TR+VGHAGTLDPMATGVLV+G++RATKILG Sbjct: 8 AGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILG 67 Query: 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 LL K Y ATIRLG+TT+TEDAEGE+++ V AR VTDE I A+ LRGDI+QVPSAV Sbjct: 68 LLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAV 127 Query: 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIR--RXXXXXXXXXXXXXXXCSSG 184 SAIKV G+RAY+L REG VEL ARPVRIDRF+VL +R CSSG Sbjct: 128 SAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSG 187 Query: 185 TYIRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGF 244 TYIRALARD+G A GVGGHLT LRRTRVGR+ LD+A +L++LAE P+LS +LD CL+ F Sbjct: 188 TYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMF 247 Query: 245 PRRDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRP 300 PRRDL+ E E T +GRP+ AGIDG+YAA+ DGRVIALL+D RT++VVVL P Sbjct: 248 PRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303 >tr|D5UM65|D5UM65_TSUPA Tax_Id=521096 SubName: Full=tRNA pseudouridine synthase B;[Tsukamurella paurometabola DSM 20162] Length = 297 Score = 337 bits (864), Expect = 1e-90 Identities = 178/290 (61%), Positives = 211/290 (72%), Gaps = 3/290 (1%) Query: 12 GLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTAT 71 GL+IVDKPAG+TSHDVV RCRR GTRKVGHAGTLDPMATGVLVIGIERATK+LG L T Sbjct: 10 GLIIVDKPAGLTSHDVVARCRRAMGTRKVGHAGTLDPMATGVLVIGIERATKLLGHLALT 69 Query: 72 DKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIKV 131 K+Y+AT+RLG +T+T+DAEGE+ A ++D + AA+A L GDIEQVPS VSAIKV Sbjct: 70 TKAYSATVRLGASTSTDDAEGEITGGAAAAGLSDADVIAAMAPLTGDIEQVPSTVSAIKV 129 Query: 132 GGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTYIRALA 191 G+RA++L REG V+L ARPVR+D F RR CSSGTY+RALA Sbjct: 130 DGKRAHQLVREGADVQLTARPVRVDEFAAHAFRR---DGDFLDVDVHVECSSGTYVRALA 186 Query: 192 RDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPRRDLSA 251 RD+GAALGVGGHLT LRRTRVG YGLD A TLDEL E P+LSY +D A GF R+++ Sbjct: 187 RDLGAALGVGGHLTALRRTRVGPYGLDLAVTLDELFETPRLSYDIDAAIATGFAVREITD 246 Query: 252 EETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPA 301 E+ D GR L P G+ GVYAA AP GR IALL++ R +V V+RP+ Sbjct: 247 EQAVDLSLGRWLDPIGMPGVYAAVAPGGRAIALLEESGNRASSVFVVRPS 296 >sp|Q5YSE0|TRUB_NOCFA Tax_Id=37329 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Nocardia farcinica] Length = 306 Score = 334 bits (857), Expect = 7e-90 Identities = 175/292 (59%), Positives = 208/292 (71%), Gaps = 3/292 (1%) Query: 12 GLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTAT 71 GL++VDK GMTSHDVV RCR++ GTRK+GHAGTLDPMATGVLV+G+ERATK+LGLLT T Sbjct: 16 GLLVVDKDGGMTSHDVVARCRKILGTRKIGHAGTLDPMATGVLVLGVERATKLLGLLTLT 75 Query: 72 DKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIKV 131 K+Y ATIRLG TTT+DAEGEV+ VPA + D ++ A VA L GDI+QVP+ VSAIK+ Sbjct: 76 TKAYTATIRLGSATTTDDAEGEVLTTVPAGHLGDAEVAAGVAALTGDIQQVPATVSAIKI 135 Query: 132 GGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTYIRALA 191 GG+RAY R G+ VELAARPV + RF+VL R CSSGTY+RALA Sbjct: 136 GGERAYARHRAGEQVELAARPVTVSRFEVLARR---DVAGFVDLDVVVECSSGTYVRALA 192 Query: 192 RDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPRRDLSA 251 RD+GAALGVGGHLT LRRTRVG + LD A TLD LA+ P+L+ +D A + FP R + A Sbjct: 193 RDLGAALGVGGHLTALRRTRVGPFTLDHARTLDALADEPRLNLDMDEAVRIAFPHRAIDA 252 Query: 252 EETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 E E R GR L P GI GVYAA DG IALL++ R V V+RP L Sbjct: 253 REAESLRDGRWLDPVGIPGVYAALTADGTAIALLEEKGKRASPVFVVRPRGL 304 >tr|D5PMR6|D5PMR6_COREQ Tax_Id=525370 (truB)SubName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-;[Rhodococcus equi ATCC 33707] Length = 308 Score = 332 bits (850), Expect = 5e-89 Identities = 177/293 (60%), Positives = 208/293 (70%), Gaps = 1/293 (0%) Query: 12 GLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTAT 71 GL+IVDK AGMTSHDVV RCR+L TRKVGHAGTLDPMATGVL++G+ERATK+LGLL T Sbjct: 15 GLLIVDKEAGMTSHDVVSRCRKLLNTRKVGHAGTLDPMATGVLILGVERATKLLGLLALT 74 Query: 72 DKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIKV 131 KSY+ATIRLG+ TTT+DAEGEV+ A VTDEQI A +A L GDI+QVP++VSAIKV Sbjct: 75 TKSYSATIRLGQATTTDDAEGEVLTTADASAVTDEQIAAEIAKLTGDIQQVPASVSAIKV 134 Query: 132 GGQRAYKLAREGQSVELAARPVRIDRFDVLDIRR-XXXXXXXXXXXXXXXCSSGTYIRAL 190 GQRA+ L R G+ V LAARPV + RFDVL R CSSGTYIRAL Sbjct: 135 DGQRAHALIRAGEEVTLAARPVTVSRFDVLARRDVPGDSGGFVDLDVDVDCSSGTYIRAL 194 Query: 191 ARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPRRDLS 250 ARD+GAALGVGGHLT LRRT VG + L+ A TL++L E P +S +D A FP R +S Sbjct: 195 ARDLGAALGVGGHLTALRRTSVGPFTLEHARTLEQLTEDPAVSLDIDQAAQTAFPHRQIS 254 Query: 251 AEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 A E E GR L P G +YAA P G IAL+Q+ R +V+V+RPATL Sbjct: 255 AAEAESISQGRWLEPIGRKEIYAAIDPSGHTIALIQERGKRASSVMVVRPATL 307 >tr|D0LBJ3|D0LBJ3_GORB4 Tax_Id=526226 SubName: Full=tRNA pseudouridine synthase B;[Gordonia bronchialis] Length = 299 Score = 331 bits (848), Expect = 8e-89 Identities = 173/292 (59%), Positives = 208/292 (71%), Gaps = 3/292 (1%) Query: 12 GLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTAT 71 GL+IVDK AG+TSHDVV RCR++F TR+VGHAGTLDPMATGVLVIGIERATK+LGLL+ T Sbjct: 10 GLLIVDKQAGITSHDVVSRCRKIFNTRRVGHAGTLDPMATGVLVIGIERATKLLGLLSLT 69 Query: 72 DKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIKV 131 KSY ATIRLG TTT+D EGE++ A VTDEQIH+ VA L GDIEQVP+ VSAIKV Sbjct: 70 TKSYEATIRLGAATTTDDLEGEIIASADASAVTDEQIHSVVAGLTGDIEQVPAKVSAIKV 129 Query: 132 GGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTYIRALA 191 G+RA+ L R G +LAARPV + RFDV+D RR CS+GTYIR+LA Sbjct: 130 DGRRAHALVRTGAEFDLAARPVTVRRFDVVDTRR---DGHFVDLDVVVDCSAGTYIRSLA 186 Query: 192 RDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPRRDLSA 251 RD+GA LGVGGHLT LRRT VG + L+ A TLDE+ E P +S +D A + FP RD+ Sbjct: 187 RDLGAELGVGGHLTALRRTAVGPFTLEHALTLDEVRERPHVSLDIDEAVKISFPHRDIDD 246 Query: 252 EETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 +E E GR L P G+ G+Y P R IAL+Q+ R +V+V+RPATL Sbjct: 247 DEAESISQGRWLDPIGMKGIYMVVDPAQRAIALVQEKGRRASSVMVVRPATL 298 >sp|Q0S212|TRUB_RHOSR Tax_Id=101510 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Rhodococcus sp.] Length = 305 Score = 323 bits (828), Expect = 2e-86 Identities = 174/293 (59%), Positives = 207/293 (70%), Gaps = 4/293 (1%) Query: 12 GLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTAT 71 GL+IVDK AG+TSHDVV RCR+L GTRKVGHAGTLDPMATGVLV+G+ERATK+LG L T Sbjct: 15 GLLIVDKDAGVTSHDVVARCRKLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGFLALT 74 Query: 72 DKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIKV 131 K+Y ATIRLG+ TTT+DAEGEVV A VTDE+I A V L GDI+Q+PS+VSAIKV Sbjct: 75 TKAYTATIRLGQATTTDDAEGEVVASADASGVTDEEIAAQVHTLTGDIQQIPSSVSAIKV 134 Query: 132 GGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTYIRALA 191 G+RA+ L R G+ ELA R V + RF+V+ R CSSGTY+RALA Sbjct: 135 DGRRAHALIRAGEEFELAPRSVTVSRFEVVARR---TEGAFVDVDVEVECSSGTYVRALA 191 Query: 192 RDVGAAL-GVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPRRDLS 250 RD+G AL GVGGHLT LRRTRVG + L+ A TL++LAE P +S +D A FP R + Sbjct: 192 RDLGIALIGVGGHLTSLRRTRVGPFTLEHARTLEQLAEEPGVSLDIDAAAQTAFPHRQVD 251 Query: 251 AEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 A+E E GR L P GI GVYAA P G IALLQ+ R +V+V+RPATL Sbjct: 252 ADEAESISQGRWLEPIGIKGVYAAIDPSGHTIALLQERGRRASSVMVVRPATL 304 >tr|C1B320|C1B320_RHOOB Tax_Id=632772 (truB)SubName: Full=tRNA pseudouridine synthase TruB; EC=5.4.99.12;[Rhodococcus opacus] Length = 305 Score = 323 bits (827), Expect = 2e-86 Identities = 173/293 (59%), Positives = 208/293 (70%), Gaps = 4/293 (1%) Query: 12 GLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTAT 71 GL+IVDK AG+TSHDVV RCR+L GTRKVGHAGTLDPMATGVLV+G+ERATK+LGLL T Sbjct: 15 GLLIVDKDAGVTSHDVVARCRKLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALT 74 Query: 72 DKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIKV 131 K+Y ATIRLG+ TTT+DAEGE+V A V DE+I A V L GDI+Q+PS+VSAIKV Sbjct: 75 TKAYTATIRLGQATTTDDAEGEIVASADASGVRDEEIAAQVRTLTGDIQQIPSSVSAIKV 134 Query: 132 GGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTYIRALA 191 G+RA+ L R G+ ELA R V + RFDV+ R CSSGTY+RALA Sbjct: 135 DGRRAHALIRAGEEFELAPRSVTVSRFDVVARR---TEGPFVDLDVEVECSSGTYVRALA 191 Query: 192 RDVGAAL-GVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPRRDLS 250 RD+G AL GVGGHLT LRRTRVG + L+ A TL++LAE P +S +D+A FP R + Sbjct: 192 RDLGIALIGVGGHLTSLRRTRVGPFTLEHARTLEQLAEEPGVSLDIDSAAQTAFPHRQID 251 Query: 251 AEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 A+E E GR L P G+ GVYAA P G IALLQ+ R +V+V+RPATL Sbjct: 252 ADEAEAISQGRWLEPIGMKGVYAAIDPSGHTIALLQERGKRASSVMVVRPATL 304 >tr|C0ZYB2|C0ZYB2_RHOE4 Tax_Id=234621 (truB)SubName: Full=tRNA pseudouridine synthase TruB; EC=5.4.99.12;[Rhodococcus erythropolis] Length = 306 Score = 322 bits (824), Expect = 5e-86 Identities = 169/292 (57%), Positives = 208/292 (71%), Gaps = 2/292 (0%) Query: 12 GLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTAT 71 G++IVDK AG+TSHDVV RCR+L TRKVGHAGTLDPMATGVLV+G+ERATK+LGLL T Sbjct: 15 GILIVDKEAGITSHDVVARCRKLLNTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALT 74 Query: 72 DKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIKV 131 K+Y+ATIRLG T T+DAEGEV+ A +VTD +I A VA L GDI+Q+P++VSAIKV Sbjct: 75 TKAYSATIRLGAATDTDDAEGEVLTSADASQVTDAEIAAIVATLTGDIKQIPASVSAIKV 134 Query: 132 GGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTYIRALA 191 GQRA+ L R G++VELA RPV + F+VL R CSSGTYIR+LA Sbjct: 135 DGQRAHALVRAGETVELAPRPVTVSTFEVL--ARRDVPGGFVDLDVDVECSSGTYIRSLA 192 Query: 192 RDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPRRDLSA 251 RD+G LGVGGHLT LRRTRVG + L+ A TL++LA+ P +S +D A FP R ++A Sbjct: 193 RDLGRELGVGGHLTALRRTRVGPFTLEHARTLEDLADQPGVSLDIDQAAQTAFPHRQITA 252 Query: 252 EETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 EE E GR L P G+ G+ AA P G IALLQ+ R +V+V+RPATL Sbjct: 253 EEAEAISQGRWLEPIGMKGICAAIDPTGHTIALLQEKGRRASSVMVVRPATL 304 >tr|C3JK60|C3JK60_RHOER Tax_Id=596309 (truB)SubName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-;[Rhodococcus erythropolis SK121] Length = 306 Score = 321 bits (822), Expect = 8e-86 Identities = 169/292 (57%), Positives = 207/292 (70%), Gaps = 2/292 (0%) Query: 12 GLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTAT 71 G++IVDK AG+TSHDVV RCR+L TRKVGHAGTLDPMATGVLV+G+ERATK+LGLL T Sbjct: 15 GILIVDKEAGITSHDVVARCRKLLNTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALT 74 Query: 72 DKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIKV 131 K+Y+ATIRLG T T+DAEGEV+ A +VTD +I A VA L GDI+Q+P++VSAIKV Sbjct: 75 TKAYSATIRLGAATDTDDAEGEVLTSADASQVTDAEIAAIVATLTGDIKQIPASVSAIKV 134 Query: 132 GGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTYIRALA 191 GQRA+ L R G++VELA RPV + F+VL R CSSGTYIR+LA Sbjct: 135 DGQRAHALVRAGETVELAPRPVTVSTFEVL--ARRDVPGGFVDLDVDVECSSGTYIRSLA 192 Query: 192 RDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPRRDLSA 251 RD+G LGVGGHLT LRRTRVG + L+ A TL++LA P +S +D A FP R ++A Sbjct: 193 RDLGRELGVGGHLTALRRTRVGPFTLEHARTLEDLAHQPGVSLDIDQAAQTAFPHRQITA 252 Query: 252 EETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 EE E GR L P G+ G+ AA P G IALLQ+ R +V+V+RPATL Sbjct: 253 EEAEAISQGRWLEPIGMKGICAAIDPTGHTIALLQEKGRRASSVMVVRPATL 304 >tr|D5Y7R9|D5Y7R9_MYCTU Tax_Id=520141 SubName: Full=tRNA pseudouridine synthase B truB;[Mycobacterium tuberculosis T85] Length = 255 Score = 317 bits (811), Expect = 2e-84 Identities = 170/255 (66%), Positives = 200/255 (78%), Gaps = 3/255 (1%) Query: 49 MATGVLVIGIERATKILGLLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQI 108 MATGVLVIGIERATKILGLLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I Sbjct: 1 MATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAI 60 Query: 109 HAAVADLRGDIEQVPSAVSAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXX 168 AA+ LRG+I QVPS+VSAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR Sbjct: 61 DAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR--- 117 Query: 169 XXXXXXXXXXXXCSSGTYIRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAE 228 CSSGTYIRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE Sbjct: 118 RDQLIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAE 177 Query: 229 HPQLSYSLDTACLVGFPRRDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDG 288 P LS SLD ACL+ F RRDL+A E +GR L GIDGVYAA DGRVIALL+D Sbjct: 178 RPALSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDE 237 Query: 289 AGRTRNVVVLRPATL 303 RTR+V VLRPAT+ Sbjct: 238 GSRTRSVAVLRPATM 252 >tr|C6WDK2|C6WDK2_ACTMD Tax_Id=446462 SubName: Full=tRNA pseudouridine synthase B;[Actinosynnema mirum] Length = 299 Score = 315 bits (808), Expect = 3e-84 Identities = 166/301 (55%), Positives = 200/301 (66%), Gaps = 3/301 (0%) Query: 1 MSGQARSGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIER 60 M R PGLV+VDKP GMTSHDVV + RR+ GTRKVGHAGTLDPMATGVLV+G+ER Sbjct: 1 MPASPRPAVPPGLVVVDKPDGMTSHDVVAKVRRILGTRKVGHAGTLDPMATGVLVLGVER 60 Query: 61 ATKILGLLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIE 120 ATK+LG L K+Y +TIRLG +TTT+DAEGEV+ + V ++ I A VA L G I+ Sbjct: 61 ATKLLGHLALDSKAYLSTIRLGASTTTDDAEGEVLSSADSTAVPEDAIRAGVAKLTGAIQ 120 Query: 121 QVPSAVSAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXX 180 QVPSAVSA+KV G+RAY R G+ VEL RPV + RFDVL IRR Sbjct: 121 QVPSAVSAVKVDGKRAYARVRAGEEVELPPRPVTVHRFDVLSIRR---EADATELDVMVE 177 Query: 181 CSSGTYIRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTAC 240 CSSGTY+RALARD+G LGVGGHL LRRTRVG + L A TL++LA+ P LS LD A Sbjct: 178 CSSGTYVRALARDLGVDLGVGGHLAALRRTRVGPFDLRVAKTLEQLADEPGLSLDLDAAV 237 Query: 241 LVGFPRRDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRP 300 FPRR+++ E HG+ LR G++G Y PDG +AL +D + VVVL P Sbjct: 238 SAAFPRREITPSEVVALSHGQRLRAGGVEGTYGVFGPDGHAVALAKDEGPLAKPVVVLTP 297 Query: 301 A 301 A Sbjct: 298 A 298 >tr|D3CGF4|D3CGF4_9ACTO Tax_Id=648999 SubName: Full=tRNA pseudouridine synthase B;[Micromonospora sp. L5] Length = 294 Score = 314 bits (805), Expect = 8e-84 Identities = 173/292 (59%), Positives = 203/292 (69%), Gaps = 4/292 (1%) Query: 12 GLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTAT 71 GL++VDKP GMTSHDVV R RRL TR+VGH GTLDPMATGVLVIG+ RAT++L + Sbjct: 5 GLIVVDKPGGMTSHDVVARIRRLARTRRVGHGGTLDPMATGVLVIGVGRATRLLTYVIGA 64 Query: 72 DKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIKV 131 KSYAATIRLG+ T T+DAEGEVV PA VTD+ + AA+A L G+I+QVPSAVSAIK+ Sbjct: 65 GKSYAATIRLGQATVTDDAEGEVVATTPAGAVTDDGVRAALAALTGEIDQVPSAVSAIKI 124 Query: 132 GGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTYIRALA 191 GQRAYK R+G++VEL AR V + R DVL IRR CSSGTYIRALA Sbjct: 125 DGQRAYKRVRDGEAVELPARRVTVSRLDVLAIRR--DVPDVVDVDVDVTCSSGTYIRALA 182 Query: 192 RDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQ--LSYSLDTACLVGFPRRDL 249 RD GAALGVGGHLT LRRT VG + L EA TLD+L E ++ LD A FPRRD Sbjct: 183 RDAGAALGVGGHLTALRRTAVGGFTLAEAATLDQLEERAPDVVNLPLDAAAARFFPRRDA 242 Query: 250 SAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPA 301 +A+ET HG PL PAGI G YA P G +IA++ + GR R +VL PA Sbjct: 243 TADETRVLSHGGPLAPAGITGPYAVFDPAGGLIAIVSERDGRARAEIVLAPA 294 >tr|D1SA87|D1SA87_9ACTO Tax_Id=644283 SubName: Full=tRNA pseudouridine synthase B;[Micromonospora aurantiaca ATCC 27029] Length = 294 Score = 314 bits (805), Expect = 8e-84 Identities = 173/292 (59%), Positives = 203/292 (69%), Gaps = 4/292 (1%) Query: 12 GLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTAT 71 GL++VDKP GMTSHDVV R RRL TR+VGH GTLDPMATGVLVIG+ RAT++L + Sbjct: 5 GLIVVDKPGGMTSHDVVARIRRLARTRRVGHGGTLDPMATGVLVIGVGRATRLLTYVIGA 64 Query: 72 DKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIKV 131 KSYAATIRLG+ T T+DAEGEVV PA VTD+ + AA+A L G+I+QVPSAVSAIK+ Sbjct: 65 GKSYAATIRLGQATVTDDAEGEVVATTPAGAVTDDGVRAALAALTGEIDQVPSAVSAIKI 124 Query: 132 GGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTYIRALA 191 GQRAYK R+G++VEL AR V + R DVL IRR CSSGTYIRALA Sbjct: 125 DGQRAYKRVRDGEAVELPARRVTVSRLDVLAIRR--DVPDVVDVDVDVTCSSGTYIRALA 182 Query: 192 RDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQ--LSYSLDTACLVGFPRRDL 249 RD GAALGVGGHLT LRRT VG + L EA TLD+L E ++ LD A FPRRD Sbjct: 183 RDAGAALGVGGHLTALRRTAVGGFTLAEAATLDQLEERAPDVVNLPLDAAAARFFPRRDA 242 Query: 250 SAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPA 301 +A+ET HG PL PAGI G YA P G +IA++ + GR R +VL PA Sbjct: 243 TADETRVLSHGGPLAPAGITGPYAVFDPAGGLIAIVSERDGRARAEIVLAPA 294 >tr|A4FM27|A4FM27_SACEN Tax_Id=405948 SubName: Full=Putative uncharacterized protein;[Saccharopolyspora erythraea] Length = 536 Score = 308 bits (788), Expect = 7e-82 Identities = 160/277 (57%), Positives = 193/277 (69%), Gaps = 3/277 (1%) Query: 15 IVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTATDKS 74 +VDKPAGMTSHDVV R RR+ GTRKVGHAGTLDPMATGVLV+G+ERATK+LG L K+ Sbjct: 1 MVDKPAGMTSHDVVARVRRIMGTRKVGHAGTLDPMATGVLVLGLERATKLLGHLAMDTKA 60 Query: 75 YAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIKVGGQ 134 Y ATIRLG TTT+DAEGEV+ + A V ++ + A VA+L G+++QVPS+VSA+KV G+ Sbjct: 61 YLATIRLGAATTTDDAEGEVLSEADASEVAEDAVRAGVAELTGELQQVPSSVSAVKVNGR 120 Query: 135 RAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTYIRALARDV 194 RAY++AR G+ VELAARPV + RFDVL +RR CSSGTY+RALARD+ Sbjct: 121 RAYEIARSGEQVELAARPVTVSRFDVLALRR---AEAATELDVLVECSSGTYVRALARDL 177 Query: 195 GAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPRRDLSAEET 254 GA LGVGGHL LRRTRVG +GL A TLD L E P LS LD A F R D+ Sbjct: 178 GAGLGVGGHLAALRRTRVGPFGLATARTLDALEEEPGLSMDLDRAVEAAFRRTDVDTAAA 237 Query: 255 EDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGR 291 HG+ + AG+ G Y PDGR IAL++D R Sbjct: 238 RALAHGQAVPAAGLKGTYGVFDPDGRAIALVRDQGPR 274 >tr|C8NU03|C8NU03_9CORY Tax_Id=585529 (truB)SubName: Full=tRNA pseudouridine synthase B; EC=4.2.1.70;[Corynebacterium genitalium ATCC 33030] Length = 306 Score = 306 bits (785), Expect = 2e-81 Identities = 164/295 (55%), Positives = 202/295 (68%), Gaps = 3/295 (1%) Query: 9 AEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLL 68 A G+V+VDKPAGMTSHDVV + RR FGTRKVGHAGTLDPMATGVLV GIER TK+L L Sbjct: 15 ANSGIVVVDKPAGMTSHDVVAQLRRFFGTRKVGHAGTLDPMATGVLVAGIERGTKLLAHL 74 Query: 69 TATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSA 128 A DK YA TIRLG +TTT+DAEG+V+ + A +TDEQI V L G+I QVPS VSA Sbjct: 75 VADDKVYATTIRLGASTTTDDAEGDVLAETDASTLTDEQIMEQVTALTGEIMQVPSKVSA 134 Query: 129 IKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTYIR 188 IK+ G+RA++L REG+ V + ARPV + FDV IRR CSSGTYIR Sbjct: 135 IKIDGKRAHELVREGKEVNIPARPVTVFSFDVAGIRR---EGSFVDVDARVHCSSGTYIR 191 Query: 189 ALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPRRD 248 +LARD+G LGVGGHLT LRR VG + L+ A TL+ L + P LS SLD A +P + Sbjct: 192 SLARDMGETLGVGGHLTALRREAVGPFTLEHARTLERLEDSPALSLSLDEALTAAWPVLN 251 Query: 249 LSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 ++A+E G+ L P G+DGV+AA PDGR +AL+++ R + V RP+TL Sbjct: 252 VTADEFAALAMGKWLEPRGLDGVHAAVGPDGRAVALVREKGKRLSTLFVARPSTL 306 >sp|C3PH13|TRUB_CORA7 Tax_Id=548476 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Corynebacterium aurimucosum] Length = 297 Score = 305 bits (782), Expect = 4e-81 Identities = 166/292 (56%), Positives = 197/292 (67%), Gaps = 3/292 (1%) Query: 12 GLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTAT 71 GLV+VDKPAGMTSHDVVG+ RR F TRKVGHAGTLDPMATGVLV+GIER TK L + A+ Sbjct: 9 GLVVVDKPAGMTSHDVVGKLRRFFRTRKVGHAGTLDPMATGVLVVGIERGTKFLAHMVAS 68 Query: 72 DKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIKV 131 K+Y ATIRLG T T+DAEGE PA V D I +A L GDI Q P+AVSAIKV Sbjct: 69 TKAYDATIRLGTATHTDDAEGEATWGEPATAVEDSAIAREIAALTGDIMQRPAAVSAIKV 128 Query: 132 GGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRXXXXXXXXXXXXXXXCSSGTYIRALA 191 G+RA++ R G+ VEL ARPV + RFD+L RR CSSGTYIR+LA Sbjct: 129 DGKRAHERVRAGEEVELPARPVTVSRFDILATRR---EGEFIDLDVSVACSSGTYIRSLA 185 Query: 192 RDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPRRDLSA 251 RD+G ALGVGGHLT LRRT VG + LD+AH LD L + P+LS SLD A +P +++ Sbjct: 186 RDLGEALGVGGHLTALRRTEVGPFRLDDAHPLDALEDSPELSLSLDEALARSYPVLEVTD 245 Query: 252 EETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 EE + G+ L P G+ G YAA P GR IAL+Q+ R V V RP+TL Sbjct: 246 EEAQALAMGKWLEPRGLKGTYAAVDPQGRSIALIQEKGKRLATVFVARPSTL 297 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.319 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 2,336,431,403 Number of extensions: 96336983 Number of successful extensions: 257266 Number of sequences better than 10.0: 2732 Number of HSP's gapped: 255163 Number of HSP's successfully gapped: 3076 Length of query: 303 Length of database: 4,236,830,644 Length adjustment: 137 Effective length of query: 166 Effective length of database: 2,523,253,276 Effective search space: 418860043816 Effective search space used: 418860043816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 80 (35.4 bits)