BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_2752 (319 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0QVZ5|A0QVZ5_MYCS2 Tax_Id=246196 RecName: Full=RNA polymeras... 618 e-175 tr|Q59553|Q59553_MYCSM Tax_Id=1772 (mysB)RecName: Full=RNA polym... 609 e-172 tr|Q1B9Z9|Q1B9Z9_MYCSS Tax_Id=164756 RecName: Full=RNA polymeras... 602 e-170 tr|A3PYH5|A3PYH5_MYCSJ Tax_Id=164757 RecName: Full=RNA polymeras... 602 e-170 tr|A1UF13|A1UF13_MYCSK Tax_Id=189918 RecName: Full=RNA polymeras... 602 e-170 tr|A1T7W4|A1T7W4_MYCVP Tax_Id=350058 RecName: Full=RNA polymeras... 600 e-170 tr|A4TCQ2|A4TCQ2_MYCGI Tax_Id=350054 RecName: Full=RNA polymeras... 597 e-169 tr|Q73W34|Q73W34_MYCPA Tax_Id=1770 (sigB)RecName: Full=RNA polym... 583 e-165 tr|A0QIP2|A0QIP2_MYCA1 Tax_Id=243243 RecName: Full=RNA polymeras... 583 e-165 tr|D5PJN3|D5PJN3_9MYCO Tax_Id=525368 (sigB)SubName: Full=RNA pol... 582 e-164 tr|Q59531|Q59531_MYCLE Tax_Id=1769 RecName: Full=RNA polymerase ... 580 e-163 tr|B8ZQV3|B8ZQV3_MYCLB Tax_Id=561304 RecName: Full=RNA polymeras... 580 e-163 tr|Q7TY20|Q7TY20_MYCBO Tax_Id=1765 (sigB)RecName: Full=RNA polym... 578 e-163 tr|Q59563|Q59563_MYCTU Tax_Id=1773 (mysB)RecName: Full=RNA polym... 578 e-163 tr|C6DLJ7|C6DLJ7_MYCTK Tax_Id=478434 RecName: Full=RNA polymeras... 578 e-163 tr|C1AFG9|C1AFG9_MYCBT Tax_Id=561275 (sigB)RecName: Full=RNA pol... 578 e-163 tr|A5WQW2|A5WQW2_MYCTF Tax_Id=336982 RecName: Full=RNA polymeras... 578 e-163 tr|A5U662|A5U662_MYCTA Tax_Id=419947 (sigB)RecName: Full=RNA pol... 578 e-163 tr|A1KM48|A1KM48_MYCBP Tax_Id=410289 (sigB)RecName: Full=RNA pol... 578 e-163 tr|D6G339|D6G339_MYCTU Tax_Id=478435 SubName: Full=RNA polymeras... 578 e-163 tr|D6FMY7|D6FMY7_MYCTU Tax_Id=611304 SubName: Full=RNA polymeras... 578 e-163 tr|D6FJT3|D6FJT3_MYCTU Tax_Id=611303 SubName: Full=RNA polymeras... 578 e-163 tr|D6F7H6|D6F7H6_MYCTU Tax_Id=611302 SubName: Full=RNA polymeras... 578 e-163 tr|D5ZJN8|D5ZJN8_MYCTU Tax_Id=537210 SubName: Full=RNA polymeras... 578 e-163 tr|D5Z6N8|D5Z6N8_MYCTU Tax_Id=537209 SubName: Full=RNA polymeras... 578 e-163 tr|D5YUI1|D5YUI1_MYCTU Tax_Id=515616 SubName: Full=RNA polymeras... 578 e-163 tr|D5YKT9|D5YKT9_MYCTU Tax_Id=520140 SubName: Full=RNA polymeras... 578 e-163 tr|D5Y7I7|D5Y7I7_MYCTU Tax_Id=520141 SubName: Full=RNA polymeras... 578 e-163 tr|D5XX39|D5XX39_MYCTU Tax_Id=515617 SubName: Full=RNA polymeras... 578 e-163 tr|A4KJZ0|A4KJZ0_MYCTU Tax_Id=395095 RecName: Full=RNA polymeras... 578 e-163 tr|P77906|P77906_MYCTU Tax_Id=1773 (mytB)RecName: Full=RNA polym... 577 e-163 tr|B2HLY9|B2HLY9_MYCMM Tax_Id=216594 (sigB)RecName: Full=RNA pol... 566 e-159 tr|A0PT65|A0PT65_MYCUA Tax_Id=362242 (sigB)RecName: Full=RNA pol... 566 e-159 tr|B1MCY5|B1MCY5_MYCA9 Tax_Id=561007 RecName: Full=RNA polymeras... 560 e-158 tr|Q5YT68|Q5YT68_NOCFA Tax_Id=37329 (sigB)RecName: Full=RNA poly... 550 e-155 tr|D5UMV5|D5UMV5_TSUPA Tax_Id=521096 SubName: Full=RNA polymeras... 541 e-152 tr|D5PMG9|D5PMG9_COREQ Tax_Id=525370 (sigB)SubName: Full=RNA pol... 541 e-152 tr|Q0S1K1|Q0S1K1_RHOSR Tax_Id=101510 (sigB)RecName: Full=RNA pol... 536 e-150 tr|C1B3C8|C1B3C8_RHOOB Tax_Id=632772 (sigB)RecName: Full=RNA pol... 536 e-150 tr|C6L2K1|C6L2K1_RHOOP Tax_Id=37919 (sigB)RecName: Full=RNA poly... 536 e-150 tr|D0LBS2|D0LBS2_GORB4 Tax_Id=526226 RecName: Full=RNA polymeras... 531 e-149 tr|C0ZYS7|C0ZYS7_RHOE4 Tax_Id=234621 (sigB)RecName: Full=RNA pol... 530 e-148 tr|C3JLK3|C3JLK3_RHOER Tax_Id=596309 RecName: Full=RNA polymeras... 530 e-148 tr|Q8VM94|Q8VM94_RHOFA Tax_Id=1828 (rofB)RecName: Full=RNA polym... 523 e-146 tr|C7MZ75|C7MZ75_SACVD Tax_Id=471857 RecName: Full=RNA polymeras... 501 e-140 >tr|A0QVZ5|A0QVZ5_MYCS2 Tax_Id=246196 RecName: Full=RNA polymerase sigma factor;[Mycobacterium smegmatis] Length = 319 Score = 618 bits (1593), Expect = e-175 Identities = 319/319 (100%), Positives = 319/319 (100%) Query: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT Sbjct: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN Sbjct: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE Sbjct: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 Query: 301 VMAKLRNGERADRLRSYAS 319 VMAKLRNGERADRLRSYAS Sbjct: 301 VMAKLRNGERADRLRSYAS 319 >tr|Q59553|Q59553_MYCSM Tax_Id=1772 (mysB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium smegmatis] Length = 319 Score = 609 bits (1570), Expect = e-172 Identities = 315/319 (98%), Positives = 316/319 (99%) Query: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT Sbjct: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN Sbjct: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE Sbjct: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 Query: 301 VMAKLRNGERADRLRSYAS 319 VMAKLRNGERAD+ YAS Sbjct: 301 VMAKLRNGERADQPAVYAS 319 >tr|Q1B9Z9|Q1B9Z9_MYCSS Tax_Id=164756 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 319 Score = 602 bits (1551), Expect = e-170 Identities = 310/319 (97%), Positives = 316/319 (99%) Query: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 MANATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLL+T Sbjct: 1 MANATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLNT 60 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 KKRLGE+RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 KKRLGESRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATDEELAEESGIP EKI DLLEHSRDPVSLDMPVG+DEEAPLGDFIED+EAMSAEN Sbjct: 181 LGREATDEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAEN 240 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVISELLHTDIR+VLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE Sbjct: 241 AVISELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 Query: 301 VMAKLRNGERADRLRSYAS 319 VMAKLRNGERADRLRSYAS Sbjct: 301 VMAKLRNGERADRLRSYAS 319 >tr|A3PYH5|A3PYH5_MYCSJ Tax_Id=164757 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 319 Score = 602 bits (1551), Expect = e-170 Identities = 310/319 (97%), Positives = 316/319 (99%) Query: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 MANATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLL+T Sbjct: 1 MANATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLNT 60 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 KKRLGE+RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 KKRLGESRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATDEELAEESGIP EKI DLLEHSRDPVSLDMPVG+DEEAPLGDFIED+EAMSAEN Sbjct: 181 LGREATDEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAEN 240 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVISELLHTDIR+VLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE Sbjct: 241 AVISELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 Query: 301 VMAKLRNGERADRLRSYAS 319 VMAKLRNGERADRLRSYAS Sbjct: 301 VMAKLRNGERADRLRSYAS 319 >tr|A1UF13|A1UF13_MYCSK Tax_Id=189918 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 319 Score = 602 bits (1551), Expect = e-170 Identities = 310/319 (97%), Positives = 316/319 (99%) Query: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 MANATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLL+T Sbjct: 1 MANATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLNT 60 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 KKRLGE+RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 KKRLGESRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATDEELAEESGIP EKI DLLEHSRDPVSLDMPVG+DEEAPLGDFIED+EAMSAEN Sbjct: 181 LGREATDEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAEN 240 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVISELLHTDIR+VLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE Sbjct: 241 AVISELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 Query: 301 VMAKLRNGERADRLRSYAS 319 VMAKLRNGERADRLRSYAS Sbjct: 301 VMAKLRNGERADRLRSYAS 319 >tr|A1T7W4|A1T7W4_MYCVP Tax_Id=350058 RecName: Full=RNA polymerase sigma factor;[Mycobacterium vanbaalenii] Length = 329 Score = 600 bits (1547), Expect = e-170 Identities = 309/319 (96%), Positives = 313/319 (98%) Query: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 MANATTSR+D DLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT Sbjct: 11 MANATTSRIDQDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 70 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 +KRLGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 71 RKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 130 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 131 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 190 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATDEELA ESGIPVEKI DLLEHSRDPVSLDMPVG+DEEAPLGDFIED+EAMSAEN Sbjct: 191 LGREATDEELAAESGIPVEKITDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAEN 250 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE Sbjct: 251 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 310 Query: 301 VMAKLRNGERADRLRSYAS 319 VMAKLRNGERADRLRSYAS Sbjct: 311 VMAKLRNGERADRLRSYAS 329 >tr|A4TCQ2|A4TCQ2_MYCGI Tax_Id=350054 RecName: Full=RNA polymerase sigma factor;[Mycobacterium gilvum] Length = 329 Score = 597 bits (1538), Expect = e-169 Identities = 308/319 (96%), Positives = 312/319 (97%) Query: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 MANATTSR D DLDAQSPAADLVRVYLNGIGKTALL AADEVELAKRIEAGLYAQHLL T Sbjct: 11 MANATTSRFDQDLDAQSPAADLVRVYLNGIGKTALLTAADEVELAKRIEAGLYAQHLLAT 70 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 +KRLGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 71 RKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 130 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 131 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 190 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVG+DEEAPLGDFIED+EAMSAEN Sbjct: 191 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAEN 250 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE Sbjct: 251 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 310 Query: 301 VMAKLRNGERADRLRSYAS 319 VMAKLRNG+RADRLRSYAS Sbjct: 311 VMAKLRNGDRADRLRSYAS 329 >tr|Q73W34|Q73W34_MYCPA Tax_Id=1770 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium paratuberculosis] Length = 332 Score = 583 bits (1504), Expect = e-165 Identities = 298/319 (93%), Positives = 312/319 (97%) Query: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 MANA+TSR D DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T Sbjct: 14 MANASTSRFDGDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLET 73 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 +KRLGE RKRDL+AVVRDG+AARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 74 RKRLGENRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 133 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 134 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 193 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAEN Sbjct: 194 LGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 253 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 254 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 313 Query: 301 VMAKLRNGERADRLRSYAS 319 VM+KLRNGERADRLRSYAS Sbjct: 314 VMSKLRNGERADRLRSYAS 332 >tr|A0QIP2|A0QIP2_MYCA1 Tax_Id=243243 RecName: Full=RNA polymerase sigma factor;[Mycobacterium avium] Length = 319 Score = 583 bits (1504), Expect = e-165 Identities = 298/319 (93%), Positives = 312/319 (97%) Query: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 MANA+TSR D DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T Sbjct: 1 MANASTSRFDGDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLET 60 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 +KRLGE RKRDL+AVVRDG+AARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 RKRLGENRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAEN Sbjct: 181 LGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 Query: 301 VMAKLRNGERADRLRSYAS 319 VM+KLRNGERADRLRSYAS Sbjct: 301 VMSKLRNGERADRLRSYAS 319 >tr|D5PJN3|D5PJN3_9MYCO Tax_Id=525368 (sigB)SubName: Full=RNA polymerase principal sigma factor SigB;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 329 Score = 582 bits (1500), Expect = e-164 Identities = 298/319 (93%), Positives = 312/319 (97%) Query: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 MANA+TSR D DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T Sbjct: 11 MANASTSRFDGDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLET 70 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 +KRLGE R+RDL+AVVRDG+AARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 71 RKRLGENRRRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 130 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 131 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 190 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATDEELA ESGIPVEKINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAEN Sbjct: 191 LGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 250 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 251 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 310 Query: 301 VMAKLRNGERADRLRSYAS 319 VM+KLR+GERADRLRSYAS Sbjct: 311 VMSKLRHGERADRLRSYAS 329 >tr|Q59531|Q59531_MYCLE Tax_Id=1769 RecName: Full=RNA polymerase sigma factor;[Mycobacterium leprae] Length = 319 Score = 580 bits (1494), Expect = e-163 Identities = 297/319 (93%), Positives = 307/319 (96%) Query: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 MA ATT+RVD+DLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYA+HLL T Sbjct: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 +KR GE RKR L AV RDG AARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 RKRFGEGRKRALAAVARDGAAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATDEELA ESGIP+EKINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAEN Sbjct: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 Query: 301 VMAKLRNGERADRLRSYAS 319 VM KLRNGERADRLRSYAS Sbjct: 301 VMCKLRNGERADRLRSYAS 319 >tr|B8ZQV3|B8ZQV3_MYCLB Tax_Id=561304 RecName: Full=RNA polymerase sigma factor;[Mycobacterium leprae] Length = 319 Score = 580 bits (1494), Expect = e-163 Identities = 297/319 (93%), Positives = 307/319 (96%) Query: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 MA ATT+RVD+DLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYA+HLL T Sbjct: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 +KR GE RKR L AV RDG AARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 RKRFGEGRKRALAAVARDGAAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATDEELA ESGIP+EKINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAEN Sbjct: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 Query: 301 VMAKLRNGERADRLRSYAS 319 VM KLRNGERADRLRSYAS Sbjct: 301 VMCKLRNGERADRLRSYAS 319 >tr|Q7TY20|Q7TY20_MYCBO Tax_Id=1765 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 323 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|Q59563|Q59563_MYCTU Tax_Id=1773 (mysB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 323 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|C6DLJ7|C6DLJ7_MYCTK Tax_Id=478434 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 345 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 30 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 89 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 90 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 149 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 150 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 209 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 210 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 269 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 270 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 329 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 330 KLRHGERADRLRSYAS 345 >tr|C1AFG9|C1AFG9_MYCBT Tax_Id=561275 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 323 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|A5WQW2|A5WQW2_MYCTF Tax_Id=336982 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 345 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 30 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 89 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 90 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 149 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 150 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 209 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 210 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 269 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 270 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 329 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 330 KLRHGERADRLRSYAS 345 >tr|A5U662|A5U662_MYCTA Tax_Id=419947 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 323 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|A1KM48|A1KM48_MYCBP Tax_Id=410289 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 323 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|D6G339|D6G339_MYCTU Tax_Id=478435 SubName: Full=RNA polymerase sigma factor sigB;[Mycobacterium tuberculosis KZN 605] Length = 338 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 23 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 82 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 83 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 142 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 143 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 202 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 203 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 262 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 263 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 322 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 323 KLRHGERADRLRSYAS 338 >tr|D6FMY7|D6FMY7_MYCTU Tax_Id=611304 SubName: Full=RNA polymerase sigma factor sigB;[Mycobacterium tuberculosis K85] Length = 323 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|D6FJT3|D6FJT3_MYCTU Tax_Id=611303 SubName: Full=RNA polymerase sigma factor sigB;[Mycobacterium tuberculosis CPHL_A] Length = 323 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|D6F7H6|D6F7H6_MYCTU Tax_Id=611302 SubName: Full=RNA polymerase sigma factor sigB;[Mycobacterium tuberculosis T46] Length = 323 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|D5ZJN8|D5ZJN8_MYCTU Tax_Id=537210 SubName: Full=RNA polymerase sigma factor sigB;[Mycobacterium tuberculosis T17] Length = 323 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|D5Z6N8|D5Z6N8_MYCTU Tax_Id=537209 SubName: Full=RNA polymerase sigma factor sigB;[Mycobacterium tuberculosis GM 1503] Length = 323 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|D5YUI1|D5YUI1_MYCTU Tax_Id=515616 SubName: Full=RNA polymerase sigma factor sigB;[Mycobacterium tuberculosis 02_1987] Length = 333 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 18 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 77 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 78 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 137 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 138 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 197 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 198 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 257 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 258 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 317 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 318 KLRHGERADRLRSYAS 333 >tr|D5YKT9|D5YKT9_MYCTU Tax_Id=520140 SubName: Full=RNA polymerase sigma factor sigB;[Mycobacterium tuberculosis EAS054] Length = 323 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|D5Y7I7|D5Y7I7_MYCTU Tax_Id=520141 SubName: Full=RNA polymerase sigma factor SigB;[Mycobacterium tuberculosis T85] Length = 323 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|D5XX39|D5XX39_MYCTU Tax_Id=515617 SubName: Full=RNA polymerase sigma factor sigB;[Mycobacterium tuberculosis T92] Length = 323 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|A4KJZ0|A4KJZ0_MYCTU Tax_Id=395095 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis str. Haarlem] Length = 323 Score = 578 bits (1491), Expect = e-163 Identities = 296/316 (93%), Positives = 310/316 (98%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR Sbjct: 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 308 KLRHGERADRLRSYAS 323 >tr|P77906|P77906_MYCTU Tax_Id=1773 (mytB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 345 Score = 577 bits (1486), Expect = e-163 Identities = 295/316 (93%), Positives = 309/316 (97%) Query: 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63 ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLN A EVELAKRIEAGLYA+HLL+T+KR Sbjct: 30 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNPAGEVELAKRIEAGLYAEHLLETRKR 89 Query: 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123 LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM Sbjct: 90 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 149 Query: 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR Sbjct: 150 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 209 Query: 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243 EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI Sbjct: 210 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 269 Query: 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303 +ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+ Sbjct: 270 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 329 Query: 304 KLRNGERADRLRSYAS 319 KLR+GERADRLRSYAS Sbjct: 330 KLRHGERADRLRSYAS 345 >tr|B2HLY9|B2HLY9_MYCMM Tax_Id=216594 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium marinum] Length = 333 Score = 566 bits (1458), Expect = e-159 Identities = 291/319 (91%), Positives = 303/319 (94%) Query: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 +A RVD+DLDAQSPAADLVRVYLNGIGKTALLNA EVELAKRIEAGLYA+HLL T Sbjct: 15 IARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLAT 74 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 +KRLG+ RKR+L AVVRDG ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 75 RKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 134 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 135 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 194 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATDEELA ESGIPVEKINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAEN Sbjct: 195 LGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 254 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 255 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 314 Query: 301 VMAKLRNGERADRLRSYAS 319 VM KLR+GERADRLRSYAS Sbjct: 315 VMCKLRHGERADRLRSYAS 333 >tr|A0PT65|A0PT65_MYCUA Tax_Id=362242 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium ulcerans] Length = 323 Score = 566 bits (1458), Expect = e-159 Identities = 291/319 (91%), Positives = 303/319 (94%) Query: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 +A RVD+DLDAQSPAADLVRVYLNGIGKTALLNA EVELAKRIEAGLYA+HLL T Sbjct: 5 IARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLAT 64 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 +KRLG+ RKR+L AVVRDG ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 65 RKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQN Sbjct: 125 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREIHQN 184 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATDEELA ESGIPVEKINDLLEHSRDPVSLDMPVG+DEEAPLGDFIED+EAMSAEN Sbjct: 185 LGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAEN 244 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 245 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 304 Query: 301 VMAKLRNGERADRLRSYAS 319 VM KLR+GERADRLRSYAS Sbjct: 305 VMCKLRHGERADRLRSYAS 323 >tr|B1MCY5|B1MCY5_MYCA9 Tax_Id=561007 RecName: Full=RNA polymerase sigma factor;[Mycobacterium abscessus] Length = 323 Score = 560 bits (1444), Expect = e-158 Identities = 290/323 (89%), Positives = 304/323 (94%), Gaps = 4/323 (1%) Query: 1 MANATTSRVDT----DLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQH 56 MANATT T DLDAQSPAADLVRVYLNGIGKTALL A DEVELAKRIEAGLYAQH Sbjct: 1 MANATTRPARTTESEDLDAQSPAADLVRVYLNGIGKTALLTAEDEVELAKRIEAGLYAQH 60 Query: 57 LLDTKKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 116 LLDTKKRLGEARK+DL +VR+G AAR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN Sbjct: 61 LLDTKKRLGEARKKDLAVIVREGNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120 Query: 117 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 176 LGLIRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE Sbjct: 121 LGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180 Query: 177 MHQNLGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAM 236 +HQ LGREA+DEELAEESGIPVEKI DLL+HSRDPVSLDMPVGTDEEAPLGDFIED+EAM Sbjct: 181 LHQRLGREASDEELAEESGIPVEKIGDLLDHSRDPVSLDMPVGTDEEAPLGDFIEDTEAM 240 Query: 237 SAENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 296 SAENAVI+ELLH+D+R VLATLDEREQQVIRLR+GLDDGQ RTLDQIGKLFGLSRERVRQ Sbjct: 241 SAENAVIAELLHSDVRSVLATLDEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQ 300 Query: 297 IEREVMAKLRNGERADRLRSYAS 319 IEREVMAKLR+G+RA+RLRSYAS Sbjct: 301 IEREVMAKLRHGDRAERLRSYAS 323 >tr|Q5YT68|Q5YT68_NOCFA Tax_Id=37329 (sigB)RecName: Full=RNA polymerase sigma factor;[Nocardia farcinica] Length = 322 Score = 550 bits (1418), Expect = e-155 Identities = 285/322 (88%), Positives = 300/322 (93%), Gaps = 3/322 (0%) Query: 1 MANATTSRV---DTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHL 57 M + T+RV D+DLDAQSPAADLVRVYLNGIG+TALL AADEVELAKRIEAGLYAQHL Sbjct: 1 MTSPATTRVRASDSDLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYAQHL 60 Query: 58 LDTKKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNL 117 L+T KRL A+K+DL +VRDG+AAR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNL Sbjct: 61 LETSKRLSAAKKKDLAMIVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNL 120 Query: 118 GLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREM 177 GLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+ Sbjct: 121 GLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREL 180 Query: 178 HQNLGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMS 237 HQ LGREATDEELA ESGIPVEKI DLL+HSRDPVSLDMPVG DEEAPLGDFIEDSEA S Sbjct: 181 HQQLGREATDEELAAESGIPVEKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATS 240 Query: 238 AENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQI 297 AE+AVI+ LLH D+R VLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQI Sbjct: 241 AESAVIAGLLHHDVRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQI 300 Query: 298 EREVMAKLRNGERADRLRSYAS 319 EREVMAKLR GERADRLR+YAS Sbjct: 301 EREVMAKLRKGERADRLRAYAS 322 >tr|D5UMV5|D5UMV5_TSUPA Tax_Id=521096 SubName: Full=RNA polymerase, sigma 70 subunit, RpoD subfamily;[Tsukamurella paurometabola DSM 20162] Length = 330 Score = 541 bits (1395), Expect = e-152 Identities = 274/310 (88%), Positives = 294/310 (94%) Query: 10 DTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKRLGEARK 69 + DLDAQSPAADLVRVYLNGIG+TALL A DEVELAKRIEAGLYAQHLLDTKKRL ++K Sbjct: 21 EADLDAQSPAADLVRVYLNGIGRTALLTAEDEVELAKRIEAGLYAQHLLDTKKRLSASKK 80 Query: 70 RDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 129 RDL +VRDG+AAR+HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY Sbjct: 81 RDLAFIVRDGQAARQHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYA 140 Query: 130 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEE 189 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARI+RE+HQ LGREATD E Sbjct: 141 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDAE 200 Query: 190 LAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLHT 249 LA ESGIP EKI DL++HSRDPVSLDMPVG+DEEAPLGDFIED+EA SAE+AVIS L+H+ Sbjct: 201 LAAESGIPAEKIADLMDHSRDPVSLDMPVGSDEEAPLGDFIEDAEAASAESAVISTLMHS 260 Query: 250 DIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGE 309 D+R VLATLDEREQQVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIEREVM+KLRNGE Sbjct: 261 DVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRNGE 320 Query: 310 RADRLRSYAS 319 RADRLR+YAS Sbjct: 321 RADRLRAYAS 330 >tr|D5PMG9|D5PMG9_COREQ Tax_Id=525370 (sigB)SubName: Full=RNA polymerase principal sigma factor SigB;[Rhodococcus equi ATCC 33707] Length = 322 Score = 541 bits (1393), Expect = e-152 Identities = 275/311 (88%), Positives = 292/311 (93%) Query: 9 VDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKRLGEAR 68 +D+DLD QSPAADLVRVYLNGIG+TALL AADEV+LA+RIEAGLYA H+L TKKRL A+ Sbjct: 12 IDSDLDGQSPAADLVRVYLNGIGRTALLTAADEVDLARRIEAGLYAAHVLATKKRLTAAK 71 Query: 69 KRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128 KRDL +VRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY Sbjct: 72 KRDLATIVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 131 Query: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ LGREATDE Sbjct: 132 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDE 191 Query: 189 ELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLH 248 EL++ESGIP KI DLL+HSRDPVSLDMPVG DEEAPLGDFIEDSEA SAENAVI+ LLH Sbjct: 192 ELSQESGIPEHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAENAVIAGLLH 251 Query: 249 TDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNG 308 +D+R VLATLDEREQQVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIEREVM KLR G Sbjct: 252 SDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRQG 311 Query: 309 ERADRLRSYAS 319 ERADRLR+YAS Sbjct: 312 ERADRLRAYAS 322 >tr|Q0S1K1|Q0S1K1_RHOSR Tax_Id=101510 (sigB)RecName: Full=RNA polymerase sigma factor;[Rhodococcus sp.] Length = 323 Score = 536 bits (1380), Expect = e-150 Identities = 275/319 (86%), Positives = 295/319 (92%), Gaps = 3/319 (0%) Query: 4 ATTSRVD---TDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 +TT+R+ DLDAQSPAADLVRVYLNGIG+TALL AADEVEL+KRIEAGLYA H+L+T Sbjct: 5 STTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIEAGLYAAHILET 64 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 KRL A+KRDL VVR+G++AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 65 GKRLSPAKKRDLATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ Sbjct: 125 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQ 184 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATD+ELAEESGIP KI DLL+HSRDPVSLDMPVG DEEAPLGDFIEDSEA SAEN Sbjct: 185 LGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAEN 244 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVI+ LLH+D+R VLATLDEREQQVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIERE Sbjct: 245 AVIAGLLHSDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIERE 304 Query: 301 VMAKLRNGERADRLRSYAS 319 VM KLR G+RA+RLRSYAS Sbjct: 305 VMGKLRQGDRAERLRSYAS 323 >tr|C1B3C8|C1B3C8_RHOOB Tax_Id=632772 (sigB)RecName: Full=RNA polymerase sigma factor;[Rhodococcus opacus] Length = 323 Score = 536 bits (1380), Expect = e-150 Identities = 275/319 (86%), Positives = 295/319 (92%), Gaps = 3/319 (0%) Query: 4 ATTSRVD---TDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 +TT+R+ DLDAQSPAADLVRVYLNGIG+TALL AADEVEL+KRIEAGLYA H+L+T Sbjct: 5 STTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIEAGLYAAHILET 64 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 KRL A+KRDL VVR+G++AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 65 GKRLSPAKKRDLATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ Sbjct: 125 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQ 184 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATD+ELAEESGIP KI DLL+HSRDPVSLDMPVG DEEAPLGDFIEDSEA SAEN Sbjct: 185 LGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAEN 244 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVI+ LLH+D+R VLATLDEREQQVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIERE Sbjct: 245 AVIAGLLHSDVRTVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIERE 304 Query: 301 VMAKLRNGERADRLRSYAS 319 VM KLR G+RA+RLRSYAS Sbjct: 305 VMGKLRQGDRAERLRSYAS 323 >tr|C6L2K1|C6L2K1_RHOOP Tax_Id=37919 (sigB)RecName: Full=RNA polymerase sigma factor;[Rhodococcus opacus] Length = 323 Score = 536 bits (1380), Expect = e-150 Identities = 275/319 (86%), Positives = 295/319 (92%), Gaps = 3/319 (0%) Query: 4 ATTSRVD---TDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 +TT+R+ DLDAQSPAADLVRVYLNGIG+TALL AADEVEL+KRIEAGLYA H+L+T Sbjct: 5 STTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIEAGLYAAHILET 64 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 KRL A+KRDL VVR+G++AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 65 GKRLSPAKKRDLATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ Sbjct: 125 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQ 184 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATD+ELAEESGIP KI DLL+HSRDPVSLDMPVG DEEAPLGDFIEDSEA SAEN Sbjct: 185 LGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAEN 244 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVI+ LLH+D+R VLATLDEREQQVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIERE Sbjct: 245 AVIAGLLHSDVRTVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIERE 304 Query: 301 VMAKLRNGERADRLRSYAS 319 VM KLR G+RA+RLRSYAS Sbjct: 305 VMGKLRQGDRAERLRSYAS 323 >tr|D0LBS2|D0LBS2_GORB4 Tax_Id=526226 RecName: Full=RNA polymerase sigma factor;[Gordonia bronchialis] Length = 337 Score = 531 bits (1369), Expect = e-149 Identities = 272/320 (85%), Positives = 296/320 (92%), Gaps = 3/320 (0%) Query: 3 NATTSR---VDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLD 59 +AT +R + DLDAQSPAADLVRVYLNGIG+TALLNA EVELAK+IEAGLYA+H+L Sbjct: 18 DATRTRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIEAGLYAKHVLA 77 Query: 60 TKKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL 119 TKKRL A+KRDL VVR+GEAAR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL Sbjct: 78 TKKRLSAAKKRDLAIVVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL 137 Query: 120 IRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ 179 IRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ Sbjct: 138 IRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQ 197 Query: 180 NLGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAE 239 LGREATDEELA ESGIP EKI DLL+HSRDPVSLDMPVG+DEEAPLGDFIED+EA SAE Sbjct: 198 QLGREATDEELANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAE 257 Query: 240 NAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER 299 +AVI+ L+HTD+R VLATLDEREQQVIR+R+GLDDGQPRTLDQIG++FGLSRERVRQIER Sbjct: 258 SAVIAGLMHTDVRAVLATLDEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIER 317 Query: 300 EVMAKLRNGERADRLRSYAS 319 EVM KLR G+RA+RLR+YAS Sbjct: 318 EVMGKLRQGDRAERLRAYAS 337 >tr|C0ZYS7|C0ZYS7_RHOE4 Tax_Id=234621 (sigB)RecName: Full=RNA polymerase sigma factor;[Rhodococcus erythropolis] Length = 323 Score = 530 bits (1365), Expect = e-148 Identities = 273/319 (85%), Positives = 293/319 (91%), Gaps = 3/319 (0%) Query: 4 ATTSRVD---TDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 +TT+R+ DLDAQSPAADLVRVYLNGIG+TALL AADEVELAKRIEAGLYA H+L T Sbjct: 5 STTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYASHVLAT 64 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 KRL A+KRDL +VR+G++AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 65 GKRLTVAKKRDLATIVREGQSARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ Sbjct: 125 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQ 184 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATD+ELAEESGIP KI DLL+HSRDPVSLDMPVG DEEAPLGDFIEDSEA SAEN Sbjct: 185 LGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAEN 244 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVI+ LLH+D+R VL TLDEREQQVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIERE Sbjct: 245 AVIAGLLHSDVRSVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIERE 304 Query: 301 VMAKLRNGERADRLRSYAS 319 VM KLR G+RA++LRSYAS Sbjct: 305 VMGKLRVGDRAEKLRSYAS 323 >tr|C3JLK3|C3JLK3_RHOER Tax_Id=596309 RecName: Full=RNA polymerase sigma factor;[Rhodococcus erythropolis SK121] Length = 323 Score = 530 bits (1365), Expect = e-148 Identities = 273/319 (85%), Positives = 293/319 (91%), Gaps = 3/319 (0%) Query: 4 ATTSRVD---TDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 +TT+R+ DLDAQSPAADLVRVYLNGIG+TALL AADEVELAKRIEAGLYA H+L T Sbjct: 5 STTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYASHVLAT 64 Query: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 KRL A+KRDL +VR+G++AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 65 GKRLTVAKKRDLATIVREGQSARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124 Query: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ Sbjct: 125 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQ 184 Query: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 LGREATD+ELAEESGIP KI DLL+HSRDPVSLDMPVG DEEAPLGDFIEDSEA SAEN Sbjct: 185 LGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAEN 244 Query: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 AVI+ LLH+D+R VL TLDEREQQVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIERE Sbjct: 245 AVIAGLLHSDVRSVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIERE 304 Query: 301 VMAKLRNGERADRLRSYAS 319 VM KLR G+RA++LRSYAS Sbjct: 305 VMGKLRVGDRAEKLRSYAS 323 >tr|Q8VM94|Q8VM94_RHOFA Tax_Id=1828 (rofB)RecName: Full=RNA polymerase sigma factor;[Rhodococcus fascians] Length = 323 Score = 523 bits (1347), Expect = e-146 Identities = 266/310 (85%), Positives = 286/310 (92%) Query: 10 DTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKRLGEARK 69 D DLDAQSPAADLVRVYLNGIG+TALL A +EV+LAKRIEAGLYA+ +L+ KRL +K Sbjct: 14 DADLDAQSPAADLVRVYLNGIGRTALLTAEEEVDLAKRIEAGLYAKQVLENTKRLSAVKK 73 Query: 70 RDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 129 R+L +VRDG AAR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY Sbjct: 74 RNLAIIVRDGSAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYA 133 Query: 130 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEE 189 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ LGREATDEE Sbjct: 134 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDEE 193 Query: 190 LAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLHT 249 L+ ESGI VEKI DLL+HSRDPVSLDMPVG+DEEAPLGDFIEDSEA SAENAVI+ LLH+ Sbjct: 194 LSSESGIAVEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDSEATSAENAVIAGLLHS 253 Query: 250 DIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGE 309 D+R VL TLDEREQQVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIEREVM KLR G+ Sbjct: 254 DVRVVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMVKLRQGD 313 Query: 310 RADRLRSYAS 319 RA++LRSYAS Sbjct: 314 RAEKLRSYAS 323 >tr|C7MZ75|C7MZ75_SACVD Tax_Id=471857 RecName: Full=RNA polymerase sigma factor;[Saccharomonospora viridis] Length = 342 Score = 501 bits (1290), Expect = e-140 Identities = 254/310 (81%), Positives = 280/310 (90%) Query: 10 DTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKRLGEARK 69 + DLDAQ PAADLVRVYLNGIGKTALL A +EV+LAKRIEAG++AQH+LDT L E RK Sbjct: 33 EADLDAQGPAADLVRVYLNGIGKTALLTAEEEVDLAKRIEAGVFAQHVLDTSDDLSEERK 92 Query: 70 RDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 129 +L VVRDGE A+ HLL+ANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA+EKFDYT Sbjct: 93 AELSEVVRDGEEAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYT 152 Query: 130 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEE 189 KGFKFSTYATWWIRQAITRGMADQ RTIRLPVHLVEQVNKLARIKR++HQ LGREAT EE Sbjct: 153 KGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRLGREATHEE 212 Query: 190 LAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLHT 249 LA ESGI +K+ DLL+H+RDPVSLDMPVG DE+APLGDFIEDSEA +AEN+VIS LL Sbjct: 213 LAAESGIAEKKVADLLDHARDPVSLDMPVGADEDAPLGDFIEDSEAANAENSVISTLLQD 272 Query: 250 DIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGE 309 D+R VLATLD+RE+ VIRLR+GLDDGQPRTLDQIGK F LSRERVRQIEREVMAKLR+GE Sbjct: 273 DLRRVLATLDDREEHVIRLRYGLDDGQPRTLDQIGKHFSLSRERVRQIEREVMAKLRHGE 332 Query: 310 RADRLRSYAS 319 RAD+LR+YAS Sbjct: 333 RADKLRAYAS 342 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.318 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 2,381,966,729 Number of extensions: 99223830 Number of successful extensions: 359929 Number of sequences better than 10.0: 8146 Number of HSP's gapped: 355237 Number of HSP's successfully gapped: 8941 Length of query: 319 Length of database: 4,236,830,644 Length adjustment: 138 Effective length of query: 181 Effective length of database: 2,510,745,412 Effective search space: 454444919572 Effective search space used: 454444919572 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 80 (35.4 bits)