BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSMEG_2758
         (466 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           12,507,864 sequences; 4,236,830,644 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|A0QW02|A0QW02_MYCS2 Tax_Id=246196 RecName: Full=RNA polymeras...   627   e-177
tr|Q59552|Q59552_MYCSM Tax_Id=1772 (mysA)RecName: Full=RNA polym...   627   e-177
tr|Q1B9Z1|Q1B9Z1_MYCSS Tax_Id=164756 RecName: Full=RNA polymeras...   598   e-169
tr|A3PYI3|A3PYI3_MYCSJ Tax_Id=164757 RecName: Full=RNA polymeras...   598   e-169
tr|A1UF21|A1UF21_MYCSK Tax_Id=189918 RecName: Full=RNA polymeras...   598   e-169
tr|A1T7X4|A1T7X4_MYCVP Tax_Id=350058 RecName: Full=RNA polymeras...   589   e-166
tr|B1MCW6|B1MCW6_MYCA9 Tax_Id=561007 RecName: Full=RNA polymeras...   587   e-165
tr|A0QIN4|A0QIN4_MYCA1 Tax_Id=243243 RecName: Full=RNA polymeras...   586   e-165
tr|D5PJP8|D5PJP8_9MYCO Tax_Id=525368 (sigA)SubName: Full=RNA pol...   586   e-165
tr|B2HLZ7|B2HLZ7_MYCMM Tax_Id=216594 (sigA)RecName: Full=RNA pol...   584   e-165
tr|A0PT58|A0PT58_MYCUA Tax_Id=362242 (sigA)RecName: Full=RNA pol...   584   e-165
sp|P0A602|RPOD_MYCTU Tax_Id=1773 (rpoD)RecName: Full=RNA polymer...   583   e-164
sp|P0A603|RPOD_MYCBO Tax_Id=1765 (rpoD)RecName: Full=RNA polymer...   583   e-164
tr|C6DLK4|C6DLK4_MYCTK Tax_Id=478434 RecName: Full=RNA polymeras...   583   e-164
tr|C1AFG2|C1AFG2_MYCBT Tax_Id=561275 (sigA)RecName: Full=RNA pol...   583   e-164
tr|A5WQV6|A5WQV6_MYCTF Tax_Id=336982 RecName: Full=RNA polymeras...   583   e-164
tr|A5U655|A5U655_MYCTA Tax_Id=419947 (sigA)RecName: Full=RNA pol...   583   e-164
tr|A1KM41|A1KM41_MYCBP Tax_Id=410289 (sigA)RecName: Full=RNA pol...   583   e-164
tr|Q60158|Q60158_MYCBO Tax_Id=1765 (rpoV)RecName: Full=RNA polym...   583   e-164
tr|D6G345|D6G345_MYCTU Tax_Id=478435 SubName: Full=RNA polymeras...   583   e-164
tr|D6FJS6|D6FJS6_MYCTU Tax_Id=611303 SubName: Full=RNA polymeras...   583   e-164
tr|D5Z6N1|D5Z6N1_MYCTU Tax_Id=537209 SubName: Full=RNA polymeras...   583   e-164
tr|Q73W40|Q73W40_MYCPA Tax_Id=1770 (sigA)RecName: Full=RNA polym...   582   e-164
tr|Q59532|Q59532_MYCLE Tax_Id=1769 (rpoT)RecName: Full=RNA polym...   582   e-164
tr|Q0S1J1|Q0S1J1_RHOSR Tax_Id=101510 (sigA)RecName: Full=RNA pol...   582   e-164
tr|C1B466|C1B466_RHOOB Tax_Id=632772 (sigA)RecName: Full=RNA pol...   582   e-164
tr|C0ZYT9|C0ZYT9_RHOE4 Tax_Id=234621 (sigA)RecName: Full=RNA pol...   582   e-164
tr|B8ZQV8|B8ZQV8_MYCLB Tax_Id=561304 (rpoT)RecName: Full=RNA pol...   582   e-164
tr|A4TCR0|A4TCR0_MYCGI Tax_Id=350054 RecName: Full=RNA polymeras...   582   e-164
tr|Q9S5K3|Q9S5K3_MYCLE Tax_Id=1769 (rpoT)RecName: Full=RNA polym...   582   e-164
tr|C6L2K0|C6L2K0_RHOOP Tax_Id=37919 (sigA)RecName: Full=RNA poly...   582   e-164
tr|C3JLL5|C3JLL5_RHOER Tax_Id=596309 RecName: Full=RNA polymeras...   582   e-164
tr|Q59502|Q59502_MYCBO Tax_Id=1765 (rpoV)RecName: Full=RNA polym...   581   e-164
tr|A2VL47|A2VL47_MYCTU Tax_Id=348776 RecName: Full=RNA polymeras...   580   e-163
tr|Q8VM92|Q8VM92_RHOFA Tax_Id=1828 (rofA)RecName: Full=RNA polym...   578   e-163
tr|D5ZJN1|D5ZJN1_MYCTU Tax_Id=537210 SubName: Full=RNA polymeras...   577   e-163
tr|Q5YT84|Q5YT84_NOCFA Tax_Id=37329 (sigA)RecName: Full=RNA poly...   572   e-161
tr|D5PMF9|D5PMF9_COREQ Tax_Id=525370 (sigA2)SubName: Full=RNA po...   569   e-160
tr|D5UMZ4|D5UMZ4_TSUPA Tax_Id=521096 SubName: Full=RNA polymeras...   561   e-158
tr|D0LBS9|D0LBS9_GORB4 Tax_Id=526226 RecName: Full=RNA polymeras...   557   e-156
tr|A4FAP1|A4FAP1_SACEN Tax_Id=405948 (sigA)RecName: Full=RNA pol...   553   e-155
tr|C6WAJ3|C6WAJ3_ACTMD Tax_Id=446462 RecName: Full=RNA polymeras...   552   e-155
tr|C7MYK8|C7MYK8_SACVD Tax_Id=471857 RecName: Full=RNA polymeras...   549   e-154
tr|D2SE95|D2SE95_GEOOG Tax_Id=526225 RecName: Full=RNA polymeras...   541   e-152
tr|C8XG60|C8XG60_NAKMY Tax_Id=479431 RecName: Full=RNA polymeras...   541   e-151

>tr|A0QW02|A0QW02_MYCS2 Tax_Id=246196 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium smegmatis]
          Length = 466

 Score =  627 bits (1617), Expect = e-177
 Identities = 344/466 (73%), Positives = 344/466 (73%)

Query: 1   MAATKASPATEEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAATKASPATEEPV                                              
Sbjct: 1   MAATKASPATEEPVKRTATKTPAKKAPAKRAAKSAAAKAGGKAPAKKAPAKRAAKGTAAK 60

Query: 61  XEDGVTDDLEVTDDLEAEPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
            EDGVTDDLEVTDDLEAEPG                                        
Sbjct: 61  PEDGVTDDLEVTDDLEAEPGEDLDVEDTDLELDDLDSDDDTAVEDEEEEADAATPAVATA 120

Query: 121 XXXXXXXXXPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXX 180
                    PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK     
Sbjct: 121 KAADDDIDEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLN 180

Query: 181 XXXXXXXXKRIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRL 240
                   KRIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRL
Sbjct: 181 AEEEVELAKRIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRL 240

Query: 241 VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ 300
           VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ
Sbjct: 241 VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ 300

Query: 301 ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPIS 360
           ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPIS
Sbjct: 301 ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPIS 360

Query: 361 LDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLT 420
           LDQTIGDEGDSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLT
Sbjct: 361 LDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLT 420

Query: 421 DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 421 DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466


>tr|Q59552|Q59552_MYCSM Tax_Id=1772 (mysA)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium smegmatis]
          Length = 466

 Score =  627 bits (1617), Expect = e-177
 Identities = 344/466 (73%), Positives = 344/466 (73%)

Query: 1   MAATKASPATEEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAATKASPATEEPV                                              
Sbjct: 1   MAATKASPATEEPVKRTATKTPAKKAPAKRAAKSAAAKAGGKAPAKKAPAKRAAKGTAAK 60

Query: 61  XEDGVTDDLEVTDDLEAEPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
            EDGVTDDLEVTDDLEAEPG                                        
Sbjct: 61  PEDGVTDDLEVTDDLEAEPGEDLDVEDTDLELDDLDSDDDTAVEDEEEEADAATPAVATA 120

Query: 121 XXXXXXXXXPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXX 180
                    PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK     
Sbjct: 121 KAADDDIDEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLN 180

Query: 181 XXXXXXXXKRIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRL 240
                   KRIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRL
Sbjct: 181 AEEEVELAKRIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRL 240

Query: 241 VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ 300
           VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ
Sbjct: 241 VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ 300

Query: 301 ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPIS 360
           ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPIS
Sbjct: 301 ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPIS 360

Query: 361 LDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLT 420
           LDQTIGDEGDSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLT
Sbjct: 361 LDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLT 420

Query: 421 DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 421 DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466


>tr|Q1B9Z1|Q1B9Z1_MYCSS Tax_Id=164756 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium sp.]
          Length = 480

 Score =  598 bits (1542), Expect = e-169
 Identities = 310/337 (91%), Positives = 311/337 (92%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 144 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 203

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGL+ATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 204 RIEAGLFATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 263

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 264 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 323

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 324 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 383

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 384 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 443

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 444 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 480


>tr|A3PYI3|A3PYI3_MYCSJ Tax_Id=164757 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium sp.]
          Length = 480

 Score =  598 bits (1542), Expect = e-169
 Identities = 310/337 (91%), Positives = 311/337 (92%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 144 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 203

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGL+ATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 204 RIEAGLFATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 263

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 264 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 323

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 324 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 383

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 384 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 443

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 444 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 480


>tr|A1UF21|A1UF21_MYCSK Tax_Id=189918 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium sp.]
          Length = 480

 Score =  598 bits (1542), Expect = e-169
 Identities = 310/337 (91%), Positives = 311/337 (92%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 144 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 203

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGL+ATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 204 RIEAGLFATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 263

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 264 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 323

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 324 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 383

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 384 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 443

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 444 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 480


>tr|A1T7X4|A1T7X4_MYCVP Tax_Id=350058 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium vanbaalenii]
          Length = 478

 Score =  589 bits (1519), Expect = e-166
 Identities = 305/337 (90%), Positives = 307/337 (91%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 142 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 201

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ +AELA+KGEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 202 RIEAGLYATQLMAELADKGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 261

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 262 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 321

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 322 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 381

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 382 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 441

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 442 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 478


>tr|B1MCW6|B1MCW6_MYCA9 Tax_Id=561007 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium abscessus]
          Length = 467

 Score =  587 bits (1512), Expect = e-165
 Identities = 304/337 (90%), Positives = 305/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 131 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 190

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL EKGEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 191 RIEAGLYATQIVTELTEKGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 250

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 251 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 310

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 311 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 370

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 371 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 430

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 431 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 467


>tr|A0QIN4|A0QIN4_MYCA1 Tax_Id=243243 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium avium]
          Length = 496

 Score =  586 bits (1511), Expect = e-165
 Identities = 302/337 (89%), Positives = 307/337 (91%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 160 PSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 219

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ ++E+AE+GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 220 RIEAGLYATQLMSEMAERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 279

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 280 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 339

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 340 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 399

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 400 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 459

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 460 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 496


>tr|D5PJP8|D5PJP8_9MYCO Tax_Id=525368 (sigA)SubName: Full=RNA
           polymerase sigma factor rpoD;[Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 503

 Score =  586 bits (1511), Expect = e-165
 Identities = 302/337 (89%), Positives = 307/337 (91%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 167 PSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 226

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ +AE+AE+G+KLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 227 RIEAGLYATQLMAEMAERGDKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 286

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 287 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 346

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 347 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 406

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 407 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 466

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 467 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 503


>tr|B2HLZ7|B2HLZ7_MYCMM Tax_Id=216594 (sigA)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium marinum]
          Length = 501

 Score =  584 bits (1506), Expect = e-165
 Identities = 301/337 (89%), Positives = 306/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 165 PSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 224

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ +AEL ++GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 225 RIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 284

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 285 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 344

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 345 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 404

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 405 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 464

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 465 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501


>tr|A0PT58|A0PT58_MYCUA Tax_Id=362242 (sigA)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium ulcerans]
          Length = 501

 Score =  584 bits (1506), Expect = e-165
 Identities = 301/337 (89%), Positives = 306/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 165 PSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 224

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ +AEL ++GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 225 RIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 284

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 285 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 344

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 345 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 404

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 405 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 464

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 465 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501


>sp|P0A602|RPOD_MYCTU Tax_Id=1773 (rpoD)RecName: Full=RNA polymerase
           sigma factor rpoD; Short=Sigma-A;[Mycobacterium
           tuberculosis]
          Length = 528

 Score =  583 bits (1503), Expect = e-164
 Identities = 300/337 (89%), Positives = 306/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 192 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 251

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 252 RIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 311

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 312 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 371

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 372 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 431

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 432 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 491

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 492 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528


>sp|P0A603|RPOD_MYCBO Tax_Id=1765 (rpoD)RecName: Full=RNA polymerase
           sigma factor rpoD; Short=Sigma-A;[Mycobacterium bovis]
          Length = 528

 Score =  583 bits (1503), Expect = e-164
 Identities = 300/337 (89%), Positives = 306/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 192 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 251

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 252 RIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 311

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 312 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 371

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 372 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 431

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 432 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 491

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 492 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528


>tr|C6DLK4|C6DLK4_MYCTK Tax_Id=478434 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis]
          Length = 528

 Score =  583 bits (1503), Expect = e-164
 Identities = 300/337 (89%), Positives = 306/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 192 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 251

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 252 RIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 311

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 312 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 371

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 372 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 431

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 432 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 491

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 492 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528


>tr|C1AFG2|C1AFG2_MYCBT Tax_Id=561275 (sigA)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium bovis]
          Length = 528

 Score =  583 bits (1503), Expect = e-164
 Identities = 300/337 (89%), Positives = 306/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 192 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 251

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 252 RIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 311

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 312 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 371

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 372 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 431

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 432 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 491

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 492 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528


>tr|A5WQV6|A5WQV6_MYCTF Tax_Id=336982 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis]
          Length = 528

 Score =  583 bits (1503), Expect = e-164
 Identities = 300/337 (89%), Positives = 306/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 192 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 251

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 252 RIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 311

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 312 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 371

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 372 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 431

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 432 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 491

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 492 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528


>tr|A5U655|A5U655_MYCTA Tax_Id=419947 (sigA)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium tuberculosis]
          Length = 528

 Score =  583 bits (1503), Expect = e-164
 Identities = 300/337 (89%), Positives = 306/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 192 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 251

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 252 RIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 311

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 312 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 371

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 372 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 431

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 432 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 491

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 492 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528


>tr|A1KM41|A1KM41_MYCBP Tax_Id=410289 (sigA)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium bovis]
          Length = 528

 Score =  583 bits (1503), Expect = e-164
 Identities = 300/337 (89%), Positives = 306/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 192 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 251

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 252 RIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 311

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 312 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 371

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 372 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 431

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 432 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 491

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 492 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528


>tr|Q60158|Q60158_MYCBO Tax_Id=1765 (rpoV)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium bovis]
          Length = 528

 Score =  583 bits (1503), Expect = e-164
 Identities = 300/337 (89%), Positives = 306/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 192 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 251

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 252 RIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 311

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 312 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 371

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 372 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 431

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 432 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 491

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 492 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528


>tr|D6G345|D6G345_MYCTU Tax_Id=478435 SubName: Full=RNA polymerase
           sigma factor sigA;[Mycobacterium tuberculosis KZN 605]
          Length = 528

 Score =  583 bits (1503), Expect = e-164
 Identities = 300/337 (89%), Positives = 306/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 192 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 251

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 252 RIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 311

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 312 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 371

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 372 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 431

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 432 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 491

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 492 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528


>tr|D6FJS6|D6FJS6_MYCTU Tax_Id=611303 SubName: Full=RNA polymerase
           sigma factor sigA;[Mycobacterium tuberculosis CPHL_A]
          Length = 528

 Score =  583 bits (1503), Expect = e-164
 Identities = 300/337 (89%), Positives = 306/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 192 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 251

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 252 RIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 311

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 312 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 371

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 372 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 431

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 432 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 491

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 492 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528


>tr|D5Z6N1|D5Z6N1_MYCTU Tax_Id=537209 SubName: Full=RNA polymerase
           sigma factor sigA;[Mycobacterium tuberculosis GM 1503]
          Length = 528

 Score =  583 bits (1503), Expect = e-164
 Identities = 300/337 (89%), Positives = 306/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 192 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 251

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 252 RIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 311

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 312 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 371

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 372 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 431

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 432 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 491

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 492 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528


>tr|Q73W40|Q73W40_MYCPA Tax_Id=1770 (sigA)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium paratuberculosis]
          Length = 509

 Score =  582 bits (1501), Expect = e-164
 Identities = 300/337 (89%), Positives = 306/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDE+ESEALRQAR+DAELTASADSVRAYLKQIGK             K
Sbjct: 173 PSEKDKASGDFVWDEDESEALRQARRDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 232

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ ++E+AE+GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 233 RIEAGLYATQLMSEMAERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 292

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 293 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 352

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQD GREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 353 MVEVINKLGRIQRELLQDPGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 412

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 413 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 472

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 473 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 509


>tr|Q59532|Q59532_MYCLE Tax_Id=1769 (rpoT)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium leprae]
          Length = 574

 Score =  582 bits (1500), Expect = e-164
 Identities = 300/337 (89%), Positives = 305/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 238 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 297

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+G KLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 298 RIEAGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 357

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 358 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 417

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 418 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 477

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 478 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 537

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 538 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574


>tr|Q0S1J1|Q0S1J1_RHOSR Tax_Id=101510 (sigA)RecName: Full=RNA
           polymerase sigma factor;[Rhodococcus sp.]
          Length = 457

 Score =  582 bits (1500), Expect = e-164
 Identities = 301/337 (89%), Positives = 305/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 121 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 180

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL++ GEKLP  QRRDM WICRDG+RAKNHLLEANLRLVVSLAKRYT
Sbjct: 181 RIEAGLYATQIMQELSDSGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYT 240

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 241 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 300

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 301 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 360

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 361 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 420

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 421 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 457


>tr|C1B466|C1B466_RHOOB Tax_Id=632772 (sigA)RecName: Full=RNA
           polymerase sigma factor;[Rhodococcus opacus]
          Length = 457

 Score =  582 bits (1500), Expect = e-164
 Identities = 301/337 (89%), Positives = 305/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 121 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 180

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL++ GEKLP  QRRDM WICRDG+RAKNHLLEANLRLVVSLAKRYT
Sbjct: 181 RIEAGLYATQIMQELSDSGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYT 240

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 241 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 300

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 301 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 360

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 361 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 420

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 421 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 457


>tr|C0ZYT9|C0ZYT9_RHOE4 Tax_Id=234621 (sigA)RecName: Full=RNA
           polymerase sigma factor;[Rhodococcus erythropolis]
          Length = 452

 Score =  582 bits (1500), Expect = e-164
 Identities = 301/337 (89%), Positives = 305/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 116 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 175

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYA Q + +LA+KGEKLP  QRRDM WICRDG+RAKNHLLEANLRLVVSLAKRYT
Sbjct: 176 RIEAGLYAVQIMQDLADKGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYT 235

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 236 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 295

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 296 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 355

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 356 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 415

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 416 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 452


>tr|B8ZQV8|B8ZQV8_MYCLB Tax_Id=561304 (rpoT)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium leprae]
          Length = 574

 Score =  582 bits (1500), Expect = e-164
 Identities = 300/337 (89%), Positives = 305/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 238 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 297

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+G KLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 298 RIEAGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 357

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 358 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 417

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 418 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 477

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 478 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 537

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 538 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574


>tr|A4TCR0|A4TCR0_MYCGI Tax_Id=350054 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium gilvum]
          Length = 488

 Score =  582 bits (1500), Expect = e-164
 Identities = 302/337 (89%), Positives = 303/337 (89%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 152 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 211

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLY TQ +AE AEKGEKL   QRRD  WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 212 RIEAGLYCTQLMAEFAEKGEKLTTAQRRDYMWICRDGDRAKNHLLEANLRLVVSLAKRYT 271

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 272 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 331

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 332 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 391

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 392 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 451

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 452 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 488


>tr|Q9S5K3|Q9S5K3_MYCLE Tax_Id=1769 (rpoT)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium leprae]
          Length = 576

 Score =  582 bits (1500), Expect = e-164
 Identities = 300/337 (89%), Positives = 305/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 240 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 299

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+G KLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 300 RIEAGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 359

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 360 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 419

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 420 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 479

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 480 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 539

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 540 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 576


>tr|C6L2K0|C6L2K0_RHOOP Tax_Id=37919 (sigA)RecName: Full=RNA
           polymerase sigma factor;[Rhodococcus opacus]
          Length = 457

 Score =  582 bits (1500), Expect = e-164
 Identities = 301/337 (89%), Positives = 305/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 121 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 180

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL++ GEKLP  QRRDM WICRDG+RAKNHLLEANLRLVVSLAKRYT
Sbjct: 181 RIEAGLYATQIMQELSDSGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYT 240

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 241 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 300

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 301 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 360

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 361 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 420

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 421 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 457


>tr|C3JLL5|C3JLL5_RHOER Tax_Id=596309 RecName: Full=RNA polymerase
           sigma factor;[Rhodococcus erythropolis SK121]
          Length = 430

 Score =  582 bits (1500), Expect = e-164
 Identities = 301/337 (89%), Positives = 305/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 94  PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 153

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYA Q + +LA+KGEKLP  QRRDM WICRDG+RAKNHLLEANLRLVVSLAKRYT
Sbjct: 154 RIEAGLYAVQIMQDLADKGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYT 213

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 214 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 273

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 274 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 333

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 334 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 393

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 394 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 430


>tr|Q59502|Q59502_MYCBO Tax_Id=1765 (rpoV)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium bovis]
          Length = 528

 Score =  581 bits (1498), Expect = e-164
 Identities = 299/337 (88%), Positives = 305/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 192 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 251

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 252 RIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 311

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 312 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 371

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 372 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 431

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 432 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 491

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKL HPSRSQVLRDYLD
Sbjct: 492 IGQVYGVTRERIRQIESKTMSKLHHPSRSQVLRDYLD 528


>tr|A2VL47|A2VL47_MYCTU Tax_Id=348776 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis C]
          Length = 528

 Score =  580 bits (1495), Expect = e-163
 Identities = 299/337 (88%), Positives = 305/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 192 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 251

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+GEKLP  QRRDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 252 RIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 311

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNL LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 312 GRGMAFLDLIQEGNLRLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 371

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 372 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 431

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 432 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 491

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 492 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528


>tr|Q8VM92|Q8VM92_RHOFA Tax_Id=1828 (rofA)RecName: Full=RNA
           polymerase sigma factor;[Rhodococcus fascians]
          Length = 474

 Score =  578 bits (1491), Expect = e-163
 Identities = 299/337 (88%), Positives = 305/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+ +DKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 138 PTAEDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 197

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGL+A +K+ E AEKGEKLPV QRRDM WICRDG+RAKNHLLEANLRLVVSLAKRYT
Sbjct: 198 RIEAGLFAVEKMRESAEKGEKLPVAQRRDMTWICRDGNRAKNHLLEANLRLVVSLAKRYT 257

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 258 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 317

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 318 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 377

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 378 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 437

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 438 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 474


>tr|D5ZJN1|D5ZJN1_MYCTU Tax_Id=537210 SubName: Full=RNA polymerase
           sigma factor sigA;[Mycobacterium tuberculosis T17]
          Length = 528

 Score =  577 bits (1488), Expect = e-163
 Identities = 298/337 (88%), Positives = 304/337 (90%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 192 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 251

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYATQ + EL+E+GEKLP    RDM WICRDGDRAKNHLLEANLRLVVSLAKRYT
Sbjct: 252 RIEAGLYATQLMTELSERGEKLPGIHHRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 311

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 312 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 371

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 372 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 431

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 432 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 491

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 492 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528


>tr|Q5YT84|Q5YT84_NOCFA Tax_Id=37329 (sigA)RecName: Full=RNA
           polymerase sigma factor;[Nocardia farcinica]
          Length = 454

 Score =  572 bits (1473), Expect = e-161
 Identities = 297/337 (88%), Positives = 300/337 (89%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PS  DKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 118 PSAADKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 177

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGLYA +K+ E AE GEKLPV  RRD  WI RDG+RAKNHLLEANLRLVVSLAKRYT
Sbjct: 178 RIEAGLYAAEKMREFAESGEKLPVAMRRDYNWIVRDGNRAKNHLLEANLRLVVSLAKRYT 237

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 238 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 297

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 298 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 357

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 358 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 417

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 418 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 454


>tr|D5PMF9|D5PMF9_COREQ Tax_Id=525370 (sigA2)SubName: Full=RNA
           polymerase sigma factor rpoD;[Rhodococcus equi ATCC
           33707]
          Length = 459

 Score =  569 bits (1467), Expect = e-160
 Identities = 296/337 (87%), Positives = 302/337 (89%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 123 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 182

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGL+AT K+ E+AEKGEK     RR++ WI RDG+RAKNHLLEANLRLVVSLAKRYT
Sbjct: 183 RIEAGLFATHKMNEMAEKGEKPSPTDRRNLNWITRDGNRAKNHLLEANLRLVVSLAKRYT 242

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 243 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 302

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 303 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 362

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 363 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 422

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 423 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 459


>tr|D5UMZ4|D5UMZ4_TSUPA Tax_Id=521096 SubName: Full=RNA polymerase,
           sigma 70 subunit, RpoD subfamily;[Tsukamurella
           paurometabola DSM 20162]
          Length = 483

 Score =  561 bits (1447), Expect = e-158
 Identities = 292/337 (86%), Positives = 299/337 (88%)

Query: 130 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXK 189
           PSE+DKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             K
Sbjct: 147 PSEQDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 206

Query: 190 RIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYT 249
           RIEAGL+A Q +    E+GEK  +  RRDM WI RDG+RAKNHLLEANLRLVVSLAKRYT
Sbjct: 207 RIEAGLFAEQMINRWVERGEKPAIGIRRDMNWIARDGNRAKNHLLEANLRLVVSLAKRYT 266

Query: 250 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 309
           GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH
Sbjct: 267 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 326

Query: 310 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 369
           MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG
Sbjct: 327 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 386

Query: 370 DSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 429
           DSQLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE
Sbjct: 387 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 446

Query: 430 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 447 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 483


>tr|D0LBS9|D0LBS9_GORB4 Tax_Id=526226 RecName: Full=RNA polymerase
           sigma factor;[Gordonia bronchialis]
          Length = 489

 Score =  557 bits (1436), Expect = e-156
 Identities = 287/333 (86%), Positives = 297/333 (89%)

Query: 134 DKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRIEA 193
           +K +GDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             KRIEA
Sbjct: 157 EKTAGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEA 216

Query: 194 GLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGM 253
           GL+AT++L  + E GEK+   Q+RD+ WI RDG+RAKNHLLEANLRLVVSLAKRYTGRGM
Sbjct: 217 GLFATERLRRIMESGEKITTAQKRDLNWISRDGNRAKNHLLEANLRLVVSLAKRYTGRGM 276

Query: 254 AFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 313
           AFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV
Sbjct: 277 AFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 336

Query: 314 INKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQL 373
           INKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQL
Sbjct: 337 INKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQL 396

Query: 374 GDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQV 433
           GDFI             FTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQV
Sbjct: 397 GDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQV 456

Query: 434 YGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           YGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 457 YGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 489


>tr|A4FAP1|A4FAP1_SACEN Tax_Id=405948 (sigA)RecName: Full=RNA
           polymerase sigma factor;[Saccharopolyspora erythraea]
          Length = 467

 Score =  553 bits (1424), Expect = e-155
 Identities = 288/338 (85%), Positives = 298/338 (88%), Gaps = 1/338 (0%)

Query: 130 PSEKD-KASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXX 188
           P ++D KA  DFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             
Sbjct: 130 PEDEDGKADSDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELA 189

Query: 189 KRIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRY 248
           KRIEAGLYA ++L +  E  E+L +Q RRD++WI RDG+RAKNHLLEANLRLVVSLAKRY
Sbjct: 190 KRIEAGLYAAERLRQAEEAEERLAMQMRRDLRWIVRDGERAKNHLLEANLRLVVSLAKRY 249

Query: 249 TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 308
           TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV
Sbjct: 250 TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 309

Query: 309 HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE 368
           HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE
Sbjct: 310 HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE 369

Query: 369 GDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLD 428
           GDSQLGDFI             FTLLQDQLQSVL TLSEREAGVVRLRFGLTDGQPRTLD
Sbjct: 370 GDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVRLRFGLTDGQPRTLD 429

Query: 429 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 430 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 467


>tr|C6WAJ3|C6WAJ3_ACTMD Tax_Id=446462 RecName: Full=RNA polymerase
           sigma factor;[Actinosynnema mirum]
          Length = 435

 Score =  552 bits (1422), Expect = e-155
 Identities = 288/340 (84%), Positives = 298/340 (87%), Gaps = 3/340 (0%)

Query: 130 PSEKDKAS---GDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXX 186
           P+E++ A    GDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK           
Sbjct: 96  PAEEENAKPGEGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVE 155

Query: 187 XXKRIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAK 246
             KRIEAGLYA ++L    ++ EKL  Q RRD++WI RDG+RAKNHLLEANLRLVVSLAK
Sbjct: 156 LAKRIEAGLYAAERLRRAEDESEKLTPQMRRDLRWIVRDGERAKNHLLEANLRLVVSLAK 215

Query: 247 RYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRI 306
           RYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRI
Sbjct: 216 RYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRI 275

Query: 307 PVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIG 366
           PVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIG
Sbjct: 276 PVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIG 335

Query: 367 DEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRT 426
           DEGDSQLGDFI             FTLLQDQLQSVL TLSEREAGVVRLRFGLTDGQPRT
Sbjct: 336 DEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVRLRFGLTDGQPRT 395

Query: 427 LDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           LDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 396 LDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 435


>tr|C7MYK8|C7MYK8_SACVD Tax_Id=471857 RecName: Full=RNA polymerase
           sigma factor;[Saccharomonospora viridis]
          Length = 439

 Score =  549 bits (1414), Expect = e-154
 Identities = 285/335 (85%), Positives = 295/335 (88%)

Query: 132 EKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRI 191
           E D    DFVWDEEESEALRQARKDAELTASADSVRAYLKQIGK             KRI
Sbjct: 105 ESDANDPDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRI 164

Query: 192 EAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGR 251
           EAGLYA ++L    E+GEKL  Q RRD++WI RDG+RAK+HLLEANLRLVVSLAKRYTGR
Sbjct: 165 EAGLYAAERLRIAEEEGEKLSTQMRRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGR 224

Query: 252 GMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMV 311
           GMAFLDLIQEGNLGLIRAVEKFDYTKG+KFSTYATWWIRQAITRAMADQARTIRIPVHMV
Sbjct: 225 GMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMV 284

Query: 312 EVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDS 371
           EVINKLGRIQRELLQDLGREPTPEELAKEMDI+PEKVLEIQQYAREPISLDQTIGDEGDS
Sbjct: 285 EVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDS 344

Query: 372 QLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIG 431
           QLGDFI             FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIG
Sbjct: 345 QLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIG 404

Query: 432 QVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           QVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 405 QVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 439


>tr|D2SE95|D2SE95_GEOOG Tax_Id=526225 RecName: Full=RNA polymerase
           sigma factor;[Geodermatophilus obscurus]
          Length = 429

 Score =  541 bits (1395), Expect = e-152
 Identities = 282/336 (83%), Positives = 293/336 (87%), Gaps = 1/336 (0%)

Query: 132 EKDKASGDFVWD-EEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKR 190
           E+    GDF WD EEESEALRQARKDAELTASADSVRAYLKQIGK             KR
Sbjct: 94  EEAAEGGDFEWDDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVDLAKR 153

Query: 191 IEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTG 250
           IEAGLY  ++L +  E+G+KL  Q RRD+ WI RDG+RAKNHLLEANLRLVVSLAKRYTG
Sbjct: 154 IEAGLYGAERLRQAEEEGQKLSPQMRRDLNWIVRDGERAKNHLLEANLRLVVSLAKRYTG 213

Query: 251 RGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHM 310
           RGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHM
Sbjct: 214 RGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHM 273

Query: 311 VEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGD 370
           VEVINKLGRIQRELLQDLGREPTPEELAKEMDITP+KVLEIQQYAREPISLDQTIGDEGD
Sbjct: 274 VEVINKLGRIQRELLQDLGREPTPEELAKEMDITPDKVLEIQQYAREPISLDQTIGDEGD 333

Query: 371 SQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEI 430
           SQLGDFI             FTL+QDQL SVL+TLSEREAGVVRLRFGLTDGQPRTLDEI
Sbjct: 334 SQLGDFIEDSEAVVAVDAVSFTLMQDQLTSVLQTLSEREAGVVRLRFGLTDGQPRTLDEI 393

Query: 431 GQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           GQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
Sbjct: 394 GQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 429


>tr|C8XG60|C8XG60_NAKMY Tax_Id=479431 RecName: Full=RNA polymerase
           sigma factor;[Nakamurella multipartita]
          Length = 448

 Score =  541 bits (1393), Expect = e-151
 Identities = 280/336 (83%), Positives = 297/336 (88%), Gaps = 1/336 (0%)

Query: 132 EKDKASGDFVWD-EEESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKR 190
           +K   S +F WD EEESEAL+QARKDAELTASADSVRAYLKQIGK             KR
Sbjct: 113 DKPGESEEFTWDDEEESEALKQARKDAELTASADSVRAYLKQIGKVALLNAEEEVDLAKR 172

Query: 191 IEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTG 250
           IEAGLY+++++ +  E GE+LP Q RRD++WI RDG+RAKNHLLEANLRLVVSLAKRYTG
Sbjct: 173 IEAGLYSSERMRQFEEAGERLPNQMRRDLRWIKRDGERAKNHLLEANLRLVVSLAKRYTG 232

Query: 251 RGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHM 310
           RGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHM
Sbjct: 233 RGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHM 292

Query: 311 VEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGD 370
           VEVINKLGRIQRELLQDLGREPTPEELAKEMDITP+KVLEIQQYAREPISLDQTIGDEGD
Sbjct: 293 VEVINKLGRIQRELLQDLGREPTPEELAKEMDITPDKVLEIQQYAREPISLDQTIGDEGD 352

Query: 371 SQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEI 430
           SQLGDFI             FTLLQDQLQ+VL+TLSEREAGVVRLRFGLTDGQPRTLDEI
Sbjct: 353 SQLGDFIEDSEAVVAVDAVSFTLLQDQLQAVLQTLSEREAGVVRLRFGLTDGQPRTLDEI 412

Query: 431 GQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466
           GQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL+
Sbjct: 413 GQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLE 448


  Database: Amellifera_nr
    Posted date:  Jul 23, 2010  5:10 AM
  Number of letters in database: 4,236,830,644
  Number of sequences in database:  12,507,864
  
Lambda     K      H
   0.315    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 12507864
Number of Hits to DB: 2,571,929,753
Number of extensions: 86811179
Number of successful extensions: 272133
Number of sequences better than 10.0: 8058
Number of HSP's gapped: 264094
Number of HSP's successfully gapped: 8807
Length of query: 466
Length of database: 4,236,830,644
Length adjustment: 142
Effective length of query: 324
Effective length of database: 2,460,713,956
Effective search space: 797271321744
Effective search space used: 797271321744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 83 (36.6 bits)