BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSMEG_3053
         (107 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           12,507,864 sequences; 4,236,830,644 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

sp|A0QWT1|RPOZ_MYCS2 Tax_Id=246196 (rpoZ)RecName: Full=DNA-direc...   214   3e-54
tr|Q4VDJ2|Q4VDJ2_MYCSM Tax_Id=1772 (rpoZ)RecName: Full=DNA-direc...   214   3e-54
tr|Q1B9F5|Q1B9F5_MYCSS Tax_Id=164756 SubName: Full=DNA-directed ...   199   1e-49
tr|A3PZ69|A3PZ69_MYCSJ Tax_Id=164757 SubName: Full=DNA-directed ...   199   1e-49
tr|A1UFK8|A1UFK8_MYCSK Tax_Id=189918 SubName: Full=DNA-directed ...   199   1e-49
sp|A1T8H5|RPOZ_MYCVP Tax_Id=350058 (rpoZ)RecName: Full=DNA-direc...   191   3e-47
tr|A4TBZ2|A4TBZ2_MYCGI Tax_Id=350054 SubName: Full=DNA-directed ...   185   1e-45
tr|B2HP48|B2HP48_MYCMM Tax_Id=216594 (rpoZ)SubName: Full=DNA-dir...   171   3e-41
tr|A0PPJ6|A0PPJ6_MYCUA Tax_Id=362242 (rpoZ)SubName: Full=DNA-dir...   171   3e-41
sp|A0QI28|RPOZ_MYCA1 Tax_Id=243243 (rpoZ)RecName: Full=DNA-direc...   169   1e-40
sp|P66721|RPOZ_MYCTU Tax_Id=1773 (rpoZ)RecName: Full=DNA-directe...   168   2e-40
sp|A5U292|RPOZ_MYCTA Tax_Id=419947 (rpoZ)RecName: Full=DNA-direc...   168   2e-40
sp|C1AN35|RPOZ_MYCBT Tax_Id=561275 (rpoZ)RecName: Full=DNA-direc...   168   2e-40
sp|A1KIH9|RPOZ_MYCBP Tax_Id=410289 (rpoZ)RecName: Full=DNA-direc...   168   2e-40
sp|P66722|RPOZ_MYCBO Tax_Id=1765 (rpoZ)RecName: Full=DNA-directe...   168   2e-40
tr|C6DTJ4|C6DTJ4_MYCTK Tax_Id=478434 (rpoZ)RecName: Full=DNA-dir...   168   2e-40
tr|A5WM73|A5WM73_MYCTF Tax_Id=336982 (rpoZ)RecName: Full=DNA-dir...   168   2e-40
tr|D6GA18|D6GA18_MYCTU Tax_Id=478435 SubName: Full=DNA-directed ...   168   2e-40
tr|D6FS18|D6FS18_MYCTU Tax_Id=611304 SubName: Full=DNA-directed ...   168   2e-40
tr|D6FGN6|D6FGN6_MYCTU Tax_Id=611303 SubName: Full=DNA-directed ...   168   2e-40
tr|D6F402|D6F402_MYCTU Tax_Id=611302 SubName: Full=DNA-directed ...   168   2e-40
tr|D5ZFF8|D5ZFF8_MYCTU Tax_Id=537210 SubName: Full=DNA-directed ...   168   2e-40
tr|D5Z3M9|D5Z3M9_MYCTU Tax_Id=537209 SubName: Full=DNA-directed ...   168   2e-40
tr|D5YR26|D5YR26_MYCTU Tax_Id=515616 SubName: Full=DNA-directed ...   168   2e-40
tr|D5YEP1|D5YEP1_MYCTU Tax_Id=520140 SubName: Full=DNA-directed ...   168   2e-40
tr|D5Y338|D5Y338_MYCTU Tax_Id=520141 SubName: Full=DNA-directed ...   168   2e-40
tr|D5XT21|D5XT21_MYCTU Tax_Id=515617 SubName: Full=DNA-directed ...   168   2e-40
tr|A4KGV1|A4KGV1_MYCTU Tax_Id=395095 (rpoZ)RecName: Full=DNA-dir...   168   2e-40
tr|A2VHS5|A2VHS5_MYCTU Tax_Id=348776 (rpoZ)RecName: Full=DNA-dir...   168   2e-40
sp|Q741G7|RPOZ_MYCPA Tax_Id=1770 (rpoZ)RecName: Full=DNA-directe...   167   3e-40
tr|B1MCD0|B1MCD0_MYCA9 Tax_Id=561007 SubName: Full=DNA-directed ...   167   5e-40
tr|D5PHW3|D5PHW3_9MYCO Tax_Id=525368 (rpoZ)SubName: Full=DNA-dir...   167   5e-40
sp|Q0S0L6|RPOZ_RHOSR Tax_Id=101510 (rpoZ)RecName: Full=DNA-direc...   164   3e-39
sp|C1B4J5|RPOZ_RHOOB Tax_Id=632772 (rpoZ)RecName: Full=DNA-direc...   164   3e-39
sp|Q9CCQ6|RPOZ_MYCLE Tax_Id=1769 (rpoZ)RecName: Full=DNA-directe...   164   3e-39
sp|B8ZUM0|RPOZ_MYCLB Tax_Id=561304 (rpoZ)RecName: Full=DNA-direc...   164   3e-39
tr|D0LCR7|D0LCR7_GORB4 Tax_Id=526226 SubName: Full=DNA-directed ...   164   3e-39
sp|Q5YTM8|RPOZ_NOCFA Tax_Id=37329 (rpoZ)RecName: Full=DNA-direct...   164   4e-39
sp|C0ZZD2|RPOZ_RHOE4 Tax_Id=234621 (rpoZ)RecName: Full=DNA-direc...   163   7e-39
tr|D5PM24|D5PM24_COREQ Tax_Id=525370 (rpoZ)SubName: Full=DNA-dir...   163   7e-39
tr|C3JSU3|C3JSU3_RHOER Tax_Id=596309 (rpoZ)RecName: Full=DNA-dir...   163   7e-39
tr|D5URX5|D5URX5_TSUPA Tax_Id=521096 SubName: Full=DNA-directed ...   154   4e-36
sp|A4FBI2|RPOZ_SACEN Tax_Id=405948 (rpoZ)RecName: Full=DNA-direc...   141   3e-32
tr|C6W8Y6|C6W8Y6_ACTMD Tax_Id=446462 (rpoZ)RecName: Full=DNA-dir...   137   3e-31
tr|C7MSK0|C7MSK0_SACVD Tax_Id=471857 (rpoZ)RecName: Full=DNA-dir...   134   4e-30

>sp|A0QWT1|RPOZ_MYCS2 Tax_Id=246196 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit omega;
           AltName: Full=RNA polymerase omega
           subunit;[Mycobacterium smegmatis]
          Length = 107

 Score =  214 bits (545), Expect = 3e-54
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   MSTPHADAQLNAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQ 60
           MSTPHADAQLNAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQ
Sbjct: 1   MSTPHADAQLNAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQ 60

Query: 61  INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE
Sbjct: 61  INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107


>tr|Q4VDJ2|Q4VDJ2_MYCSM Tax_Id=1772 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6;[Mycobacterium smegmatis]
          Length = 107

 Score =  214 bits (545), Expect = 3e-54
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   MSTPHADAQLNAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQ 60
           MSTPHADAQLNAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQ
Sbjct: 1   MSTPHADAQLNAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQ 60

Query: 61  INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE
Sbjct: 61  INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107


>tr|Q1B9F5|Q1B9F5_MYCSS Tax_Id=164756 SubName: Full=DNA-directed RNA
           polymerase, omega subunit;[Mycobacterium sp.]
          Length = 107

 Score =  199 bits (505), Expect = 1e-49
 Identities = 99/107 (92%), Positives = 101/107 (94%)

Query: 1   MSTPHADAQLNAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQ 60
           MSTPHADAQL A DDL ID++AA AYDTPLGITNPPIDELL RASSKYALVIYAAKRARQ
Sbjct: 1   MSTPHADAQLTAVDDLTIDAAAAGAYDTPLGITNPPIDELLDRASSKYALVIYAAKRARQ 60

Query: 61  INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHEDLLEHTEGE 107


>tr|A3PZ69|A3PZ69_MYCSJ Tax_Id=164757 SubName: Full=DNA-directed RNA
           polymerase, omega subunit;[Mycobacterium sp.]
          Length = 107

 Score =  199 bits (505), Expect = 1e-49
 Identities = 99/107 (92%), Positives = 101/107 (94%)

Query: 1   MSTPHADAQLNAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQ 60
           MSTPHADAQL A DDL ID++AA AYDTPLGITNPPIDELL RASSKYALVIYAAKRARQ
Sbjct: 1   MSTPHADAQLTAVDDLTIDAAAAGAYDTPLGITNPPIDELLDRASSKYALVIYAAKRARQ 60

Query: 61  INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHEDLLEHTEGE 107


>tr|A1UFK8|A1UFK8_MYCSK Tax_Id=189918 SubName: Full=DNA-directed RNA
           polymerase, omega subunit;[Mycobacterium sp.]
          Length = 107

 Score =  199 bits (505), Expect = 1e-49
 Identities = 99/107 (92%), Positives = 101/107 (94%)

Query: 1   MSTPHADAQLNAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQ 60
           MSTPHADAQL A DDL ID++AA AYDTPLGITNPPIDELL RASSKYALVIYAAKRARQ
Sbjct: 1   MSTPHADAQLTAVDDLTIDAAAAGAYDTPLGITNPPIDELLDRASSKYALVIYAAKRARQ 60

Query: 61  INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHEDLLEHTEGE 107


>sp|A1T8H5|RPOZ_MYCVP Tax_Id=350058 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit omega;
           AltName: Full=RNA polymerase omega
           subunit;[Mycobacterium vanbaalenii]
          Length = 104

 Score =  191 bits (484), Expect = 3e-47
 Identities = 97/107 (90%), Positives = 99/107 (92%), Gaps = 3/107 (2%)

Query: 1   MSTPHADAQLNAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQ 60
           MSTPHAD +L A D   ID SAASAYDTPLGITNPPIDELL RASSKYALVIYAAKRARQ
Sbjct: 1   MSTPHADTRLAAVD---IDPSAASAYDTPLGITNPPIDELLDRASSKYALVIYAAKRARQ 57

Query: 61  INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           INDYYNQLGDGILEYVGPLVEPGLQEKPLSIA+REIHGDLLEHTEGE
Sbjct: 58  INDYYNQLGDGILEYVGPLVEPGLQEKPLSIAMREIHGDLLEHTEGE 104


>tr|A4TBZ2|A4TBZ2_MYCGI Tax_Id=350054 SubName: Full=DNA-directed RNA
           polymerase, omega subunit;[Mycobacterium gilvum]
          Length = 107

 Score =  185 bits (470), Expect = 1e-45
 Identities = 95/105 (90%), Positives = 98/105 (93%), Gaps = 3/105 (2%)

Query: 3   TPHADAQLNAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQIN 62
           TP AD++L AAD   ID SAASAYDTPLGITNPPIDELL RASSKYALVIYAAKRARQIN
Sbjct: 6   TPTADSRLAAAD---IDPSAASAYDTPLGITNPPIDELLDRASSKYALVIYAAKRARQIN 62

Query: 63  DYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           DYYNQLGDGILEYVGPLVEPGLQEKPLSIA+REIHGDLLEHTEGE
Sbjct: 63  DYYNQLGDGILEYVGPLVEPGLQEKPLSIAMREIHGDLLEHTEGE 107


>tr|B2HP48|B2HP48_MYCMM Tax_Id=216594 (rpoZ)SubName:
           Full=DNA-directed RNA polymerase (Omega chain)
           RpoZ;[Mycobacterium marinum]
          Length = 110

 Score =  171 bits (433), Expect = 3e-41
 Identities = 87/110 (79%), Positives = 91/110 (82%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQL---NAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS P +DA L   +A D     S    AYDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110


>tr|A0PPJ6|A0PPJ6_MYCUA Tax_Id=362242 (rpoZ)SubName:
           Full=DNA-directed RNA polymerase (Omega chain)
           RpoZ;[Mycobacterium ulcerans]
          Length = 110

 Score =  171 bits (432), Expect = 3e-41
 Identities = 87/110 (79%), Positives = 91/110 (82%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQL---NAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS P +DA L   +A D     S    AYDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSIPQSDAPLAAVSAVDQFDPSSGGIGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110


>sp|A0QI28|RPOZ_MYCA1 Tax_Id=243243 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit omega;
           AltName: Full=RNA polymerase omega
           subunit;[Mycobacterium avium]
          Length = 108

 Score =  169 bits (427), Expect = 1e-40
 Identities = 89/109 (81%), Positives = 92/109 (84%), Gaps = 3/109 (2%)

Query: 1   MSTPHADAQLNAADDLGIDSSAAS--AYDTPLGITNPPIDELLSRASSKYALVIYAAKRA 58
           M+   +DA L A  D   D SA    AYDTPLGITNPPIDELL R SSKYALVIYAAKRA
Sbjct: 1   MTNSQSDAALAAVPDR-FDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRA 59

Query: 59  RQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           RQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE
Sbjct: 60  RQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 108


>sp|P66721|RPOZ_MYCTU Tax_Id=1773 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit omega;
           AltName: Full=RNA polymerase omega
           subunit;[Mycobacterium tuberculosis]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>sp|A5U292|RPOZ_MYCTA Tax_Id=419947 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit omega;
           AltName: Full=RNA polymerase omega
           subunit;[Mycobacterium tuberculosis]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>sp|C1AN35|RPOZ_MYCBT Tax_Id=561275 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit omega;
           AltName: Full=RNA polymerase omega
           subunit;[Mycobacterium bovis]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>sp|A1KIH9|RPOZ_MYCBP Tax_Id=410289 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit omega;
           AltName: Full=RNA polymerase omega
           subunit;[Mycobacterium bovis]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>sp|P66722|RPOZ_MYCBO Tax_Id=1765 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit omega;
           AltName: Full=RNA polymerase omega
           subunit;[Mycobacterium bovis]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>tr|C6DTJ4|C6DTJ4_MYCTK Tax_Id=478434 (rpoZ)RecName:
           Full=DNA-directed RNA polymerase subunit omega;
           Short=RNAP omega subunit; EC=2.7.7.6;[Mycobacterium
           tuberculosis]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>tr|A5WM73|A5WM73_MYCTF Tax_Id=336982 (rpoZ)RecName:
           Full=DNA-directed RNA polymerase subunit omega;
           Short=RNAP omega subunit; EC=2.7.7.6;[Mycobacterium
           tuberculosis]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>tr|D6GA18|D6GA18_MYCTU Tax_Id=478435 SubName: Full=DNA-directed RNA
           polymerase subunit omega rpoZ;[Mycobacterium
           tuberculosis KZN 605]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>tr|D6FS18|D6FS18_MYCTU Tax_Id=611304 SubName: Full=DNA-directed RNA
           polymerase subunit omega rpoZ;[Mycobacterium
           tuberculosis K85]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>tr|D6FGN6|D6FGN6_MYCTU Tax_Id=611303 SubName: Full=DNA-directed RNA
           polymerase subunit omega rpoZ;[Mycobacterium
           tuberculosis CPHL_A]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>tr|D6F402|D6F402_MYCTU Tax_Id=611302 SubName: Full=DNA-directed RNA
           polymerase subunit omega rpoZ;[Mycobacterium
           tuberculosis T46]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>tr|D5ZFF8|D5ZFF8_MYCTU Tax_Id=537210 SubName: Full=DNA-directed RNA
           polymerase subunit omega rpoZ;[Mycobacterium
           tuberculosis T17]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>tr|D5Z3M9|D5Z3M9_MYCTU Tax_Id=537209 SubName: Full=DNA-directed RNA
           polymerase (Omega chain) rpoZ;[Mycobacterium
           tuberculosis GM 1503]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>tr|D5YR26|D5YR26_MYCTU Tax_Id=515616 SubName: Full=DNA-directed RNA
           polymerase omega subunit rpoZ;[Mycobacterium
           tuberculosis 02_1987]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>tr|D5YEP1|D5YEP1_MYCTU Tax_Id=520140 SubName: Full=DNA-directed RNA
           polymerase subunit omega;[Mycobacterium tuberculosis
           EAS054]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>tr|D5Y338|D5Y338_MYCTU Tax_Id=520141 SubName: Full=DNA-directed RNA
           polymerase subunit omega;[Mycobacterium tuberculosis
           T85]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>tr|D5XT21|D5XT21_MYCTU Tax_Id=515617 SubName: Full=DNA-directed RNA
           polymerase subunit omega rpoZ;[Mycobacterium
           tuberculosis T92]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>tr|A4KGV1|A4KGV1_MYCTU Tax_Id=395095 (rpoZ)RecName:
           Full=DNA-directed RNA polymerase subunit omega;
           Short=RNAP omega subunit; EC=2.7.7.6;[Mycobacterium
           tuberculosis str. Haarlem]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>tr|A2VHS5|A2VHS5_MYCTU Tax_Id=348776 (rpoZ)RecName:
           Full=DNA-directed RNA polymerase subunit omega;
           Short=RNAP omega subunit; EC=2.7.7.6;[Mycobacterium
           tuberculosis C]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40
 Identities = 87/110 (79%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110


>sp|Q741G7|RPOZ_MYCPA Tax_Id=1770 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit omega;
           AltName: Full=RNA polymerase omega
           subunit;[Mycobacterium paratuberculosis]
          Length = 108

 Score =  167 bits (424), Expect = 3e-40
 Identities = 89/109 (81%), Positives = 92/109 (84%), Gaps = 3/109 (2%)

Query: 1   MSTPHADAQLNAADDLGIDSSAAS--AYDTPLGITNPPIDELLSRASSKYALVIYAAKRA 58
           M+   +DA L A  D   D SA    AYDTPLGITNPPIDELL R SSKYALVIYAAKRA
Sbjct: 1   MTNSQSDAALAAVLDR-FDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRA 59

Query: 59  RQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           RQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE
Sbjct: 60  RQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 108


>tr|B1MCD0|B1MCD0_MYCA9 Tax_Id=561007 SubName: Full=DNA-directed RNA
           polymerase omega subunit;[Mycobacterium abscessus]
          Length = 102

 Score =  167 bits (422), Expect = 5e-40
 Identities = 87/107 (81%), Positives = 90/107 (84%), Gaps = 5/107 (4%)

Query: 1   MSTPHADAQLNAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQ 60
           MST   D  +    D     S  +A DTPLGITNPPIDELL+RASSKYALVIYAAKRARQ
Sbjct: 1   MSTSQTDVIVEPGTD-----SYDAALDTPLGITNPPIDELLARASSKYALVIYAAKRARQ 55

Query: 61  INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE
Sbjct: 56  INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 102


>tr|D5PHW3|D5PHW3_9MYCO Tax_Id=525368 (rpoZ)SubName:
           Full=DNA-directed RNA polymerase subunit omega;
           EC=2.7.7.6;[Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 108

 Score =  167 bits (422), Expect = 5e-40
 Identities = 86/108 (79%), Positives = 90/108 (83%), Gaps = 1/108 (0%)

Query: 1   MSTPHADAQLNAADDLGIDSSAA-SAYDTPLGITNPPIDELLSRASSKYALVIYAAKRAR 59
           M+ P +DA L A  D    S+     YDTPLGITNPPIDELL R SSKYALVIYAAKRAR
Sbjct: 1   MTIPQSDAALAAVPDRFDPSTGGHGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRAR 60

Query: 60  QINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           QINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 61  QINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 108


>sp|Q0S0L6|RPOZ_RHOSR Tax_Id=101510 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit omega;
           AltName: Full=RNA polymerase omega subunit;[Rhodococcus
           sp.]
          Length = 101

 Score =  164 bits (416), Expect = 3e-39
 Identities = 81/86 (94%), Positives = 82/86 (95%)

Query: 22  AASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVE 81
           A  AYDTPLGITNPPIDELL+R SSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVE
Sbjct: 16  ALPAYDTPLGITNPPIDELLARTSSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVE 75

Query: 82  PGLQEKPLSIALREIHGDLLEHTEGE 107
           PGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 76  PGLQEKPLSIALREIHSDLLEHTEGE 101


>sp|C1B4J5|RPOZ_RHOOB Tax_Id=632772 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit omega;
           AltName: Full=RNA polymerase omega subunit;[Rhodococcus
           opacus]
          Length = 101

 Score =  164 bits (416), Expect = 3e-39
 Identities = 81/86 (94%), Positives = 82/86 (95%)

Query: 22  AASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVE 81
           A  AYDTPLGITNPPIDELL+R SSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVE
Sbjct: 16  ALPAYDTPLGITNPPIDELLARTSSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVE 75

Query: 82  PGLQEKPLSIALREIHGDLLEHTEGE 107
           PGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 76  PGLQEKPLSIALREIHSDLLEHTEGE 101


>sp|Q9CCQ6|RPOZ_MYCLE Tax_Id=1769 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit omega;
           AltName: Full=RNA polymerase omega
           subunit;[Mycobacterium leprae]
          Length = 110

 Score =  164 bits (415), Expect = 3e-39
 Identities = 83/110 (75%), Positives = 89/110 (80%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS P ++  L+A    D     S     YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQIND+YNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE
Sbjct: 61  ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110


>sp|B8ZUM0|RPOZ_MYCLB Tax_Id=561304 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit omega;
           AltName: Full=RNA polymerase omega
           subunit;[Mycobacterium leprae]
          Length = 110

 Score =  164 bits (415), Expect = 3e-39
 Identities = 83/110 (75%), Positives = 89/110 (80%), Gaps = 3/110 (2%)

Query: 1   MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
           MS P ++  L+A    D     S     YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct: 1   MSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60

Query: 58  ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           ARQIND+YNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE
Sbjct: 61  ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110


>tr|D0LCR7|D0LCR7_GORB4 Tax_Id=526226 SubName: Full=DNA-directed RNA
           polymerase, omega subunit;[Gordonia bronchialis]
          Length = 99

 Score =  164 bits (415), Expect = 3e-39
 Identities = 80/85 (94%), Positives = 82/85 (96%)

Query: 23  ASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEP 82
           A AYDTPLGITNPPID+LL RASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEP
Sbjct: 15  APAYDTPLGITNPPIDDLLERASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEP 74

Query: 83  GLQEKPLSIALREIHGDLLEHTEGE 107
           GLQEKPLSIA+REIH DLLEHTEGE
Sbjct: 75  GLQEKPLSIAMREIHSDLLEHTEGE 99


>sp|Q5YTM8|RPOZ_NOCFA Tax_Id=37329 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit omega;
           AltName: Full=RNA polymerase omega subunit;[Nocardia
           farcinica]
          Length = 91

 Score =  164 bits (414), Expect = 4e-39
 Identities = 78/89 (87%), Positives = 83/89 (93%)

Query: 19  DSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGP 78
           D+  A AYDTP+G+TNPPIDELL R SSKYALVIYAAKRARQINDYYNQLGDGILEYVGP
Sbjct: 3   DTKTAPAYDTPIGLTNPPIDELLERTSSKYALVIYAAKRARQINDYYNQLGDGILEYVGP 62

Query: 79  LVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           LVEPGLQEKPLS+ALREIH DLLEH+EGE
Sbjct: 63  LVEPGLQEKPLSVALREIHADLLEHSEGE 91


>sp|C0ZZD2|RPOZ_RHOE4 Tax_Id=234621 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit omega;
           AltName: Full=RNA polymerase omega subunit;[Rhodococcus
           erythropolis]
          Length = 99

 Score =  163 bits (412), Expect = 7e-39
 Identities = 80/86 (93%), Positives = 81/86 (94%)

Query: 22  AASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVE 81
           A  AYDTPLGITNPPIDELL R SSKYALVIY+AKRARQINDYYNQLGDGILEYVGPLVE
Sbjct: 14  ALPAYDTPLGITNPPIDELLERTSSKYALVIYSAKRARQINDYYNQLGDGILEYVGPLVE 73

Query: 82  PGLQEKPLSIALREIHGDLLEHTEGE 107
           PGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 74  PGLQEKPLSIALREIHADLLEHTEGE 99


>tr|D5PM24|D5PM24_COREQ Tax_Id=525370 (rpoZ)SubName:
           Full=DNA-directed RNA polymerase subunit omega;
           EC=2.7.7.6;[Rhodococcus equi ATCC 33707]
          Length = 94

 Score =  163 bits (412), Expect = 7e-39
 Identities = 80/86 (93%), Positives = 81/86 (94%)

Query: 22  AASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVE 81
           A  AYDTPLGITNPPIDELL R SSKYALVIY+AKRARQINDYYNQLGDGILEYVGPLVE
Sbjct: 9   ALPAYDTPLGITNPPIDELLERTSSKYALVIYSAKRARQINDYYNQLGDGILEYVGPLVE 68

Query: 82  PGLQEKPLSIALREIHGDLLEHTEGE 107
           PGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 69  PGLQEKPLSIALREIHADLLEHTEGE 94


>tr|C3JSU3|C3JSU3_RHOER Tax_Id=596309 (rpoZ)RecName:
           Full=DNA-directed RNA polymerase subunit omega;
           Short=RNAP omega subunit; EC=2.7.7.6;[Rhodococcus
           erythropolis SK121]
          Length = 99

 Score =  163 bits (412), Expect = 7e-39
 Identities = 80/86 (93%), Positives = 81/86 (94%)

Query: 22  AASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVE 81
           A  AYDTPLGITNPPIDELL R SSKYALVIY+AKRARQINDYYNQLGDGILEYVGPLVE
Sbjct: 14  ALPAYDTPLGITNPPIDELLERTSSKYALVIYSAKRARQINDYYNQLGDGILEYVGPLVE 73

Query: 82  PGLQEKPLSIALREIHGDLLEHTEGE 107
           PGLQEKPLSIALREIH DLLEHTEGE
Sbjct: 74  PGLQEKPLSIALREIHADLLEHTEGE 99


>tr|D5URX5|D5URX5_TSUPA Tax_Id=521096 SubName: Full=DNA-directed RNA
           polymerase, omega subunit;[Tsukamurella paurometabola
           DSM 20162]
          Length = 91

 Score =  154 bits (388), Expect = 4e-36
 Identities = 75/88 (85%), Positives = 78/88 (88%)

Query: 20  SSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPL 79
           +S  + YD PLGITNPPIDELL R SSKYALVIYAAKRARQINDYYN L DGILEYVGPL
Sbjct: 4   TSTEAVYDQPLGITNPPIDELLDRTSSKYALVIYAAKRARQINDYYNSLSDGILEYVGPL 63

Query: 80  VEPGLQEKPLSIALREIHGDLLEHTEGE 107
           VEPGL EKPLSIA+REIH DLLEHTEGE
Sbjct: 64  VEPGLHEKPLSIAMREIHEDLLEHTEGE 91


>sp|A4FBI2|RPOZ_SACEN Tax_Id=405948 (rpoZ)RecName: Full=DNA-directed
           RNA polymerase subunit omega; Short=RNAP omega subunit;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit omega;
           AltName: Full=RNA polymerase omega
           subunit;[Saccharopolyspora erythraea]
          Length = 97

 Score =  141 bits (355), Expect = 3e-32
 Identities = 73/107 (68%), Positives = 84/107 (78%), Gaps = 10/107 (9%)

Query: 1   MSTPHADAQLNAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKRARQ 60
           MSTP+A A  N++  L          + P GITNPPID+LL + SSKYALVIY+AKRARQ
Sbjct: 1   MSTPNALAAFNSSPSL----------NAPEGITNPPIDDLLEQVSSKYALVIYSAKRARQ 50

Query: 61  INDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
           INDYY QLG+G+LEYVGPLVEPG +EKPLSIALREIH  +LEHTEGE
Sbjct: 51  INDYYAQLGEGLLEYVGPLVEPGPREKPLSIALREIHAGVLEHTEGE 97


>tr|C6W8Y6|C6W8Y6_ACTMD Tax_Id=446462 (rpoZ)RecName:
           Full=DNA-directed RNA polymerase subunit omega;
           Short=RNAP omega subunit; EC=2.7.7.6;[Actinosynnema
           mirum]
          Length = 92

 Score =  137 bits (346), Expect = 3e-31
 Identities = 67/80 (83%), Positives = 73/80 (91%)

Query: 28  TPLGITNPPIDELLSRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEK 87
           +P GITNPPID+LL + SSKYALVIYAAKRARQINDYY QLG+G+LEYVGPLVEPG +EK
Sbjct: 13  SPEGITNPPIDDLLEQVSSKYALVIYAAKRARQINDYYAQLGEGLLEYVGPLVEPGPREK 72

Query: 88  PLSIALREIHGDLLEHTEGE 107
           PLSIALREIH  LLEHTEGE
Sbjct: 73  PLSIALREIHAGLLEHTEGE 92


>tr|C7MSK0|C7MSK0_SACVD Tax_Id=471857 (rpoZ)RecName:
           Full=DNA-directed RNA polymerase subunit omega;
           Short=RNAP omega subunit; EC=2.7.7.6;[Saccharomonospora
           viridis]
          Length = 91

 Score =  134 bits (337), Expect = 4e-30
 Identities = 66/77 (85%), Positives = 70/77 (90%)

Query: 31  GITNPPIDELLSRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLS 90
           GITNPPIDELL + SSKYALVIYAAKRARQINDYY QLG+G+LEYVGPLVEPG +EK LS
Sbjct: 15  GITNPPIDELLEKVSSKYALVIYAAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKSLS 74

Query: 91  IALREIHGDLLEHTEGE 107
           IALREIH  LLEHTEGE
Sbjct: 75  IALREIHAGLLEHTEGE 91


  Database: Amellifera_nr
    Posted date:  Jul 23, 2010  5:10 AM
  Number of letters in database: 4,236,830,644
  Number of sequences in database:  12,507,864
  
Lambda     K      H
   0.312    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 12507864
Number of Hits to DB: 880,921,588
Number of extensions: 30579145
Number of successful extensions: 62654
Number of sequences better than 10.0: 636
Number of HSP's gapped: 63463
Number of HSP's successfully gapped: 636
Length of query: 107
Length of database: 4,236,830,644
Length adjustment: 75
Effective length of query: 32
Effective length of database: 3,298,740,844
Effective search space: 105559707008
Effective search space used: 105559707008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 75 (33.5 bits)