BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSMEG_3202
         (506 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           12,507,864 sequences; 4,236,830,644 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|A0QX78|A0QX78_MYCS2 Tax_Id=246196 SubName: Full=Putative unch...   241   1e-61
tr|A1T7X2|A1T7X2_MYCVP Tax_Id=350058 SubName: Full=PE_PGRS famil...    37   8.7  

>tr|A0QX78|A0QX78_MYCS2 Tax_Id=246196 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium smegmatis]
          Length = 506

 Score =  241 bits (616), Expect = 1e-61
 Identities = 127/169 (75%), Positives = 127/169 (75%)

Query: 1   MTKHQRLTXXXXXXXXXXXXXXXXQXXXXXXXXXXXXHQTPTSTSTPRWLTVTSTPEGAP 60
           MTKHQRLT                Q            HQTPTSTSTPRWLTVTSTPEGAP
Sbjct: 1   MTKHQRLTSAVAASIVATAGVAVSQAPAPASTGTPTAHQTPTSTSTPRWLTVTSTPEGAP 60

Query: 61  ATPNALYGAILXXXXXXXXXXXXXXIGHREPGISGSPAFTAVRAVRPGSSTARLVFAPKT 120
           ATPNALYGAIL              IGHREPGISGSPAFTAVRAVRPGSSTARLVFAPKT
Sbjct: 61  ATPNALYGAILPSTSPGSVTSTGSGIGHREPGISGSPAFTAVRAVRPGSSTARLVFAPKT 120

Query: 121 STSGTALTVTPIAVGMVGNAKVTVAVDSSGRPMIGPGGWLIGNGIEPGQ 169
           STSGTALTVTPIAVGMVGNAKVTVAVDSSGRPMIGPGGWLIGNGIEPGQ
Sbjct: 121 STSGTALTVTPIAVGMVGNAKVTVAVDSSGRPMIGPGGWLIGNGIEPGQ 169



 Score = 84.3 bits (207), Expect = 4e-14
 Identities = 45/64 (70%), Positives = 45/64 (70%)

Query: 395 DAQSSSNXXXXXXXXXXXXXXXXXXXKTGNPGNATDRSATRENVSNRVTGRSTPTRSADK 454
           DAQSSSN                   KTGNPGNATDRSATRENVSNRVTGRSTPTRSADK
Sbjct: 395 DAQSSSNRARPGQGGQAGRGGFGRDGKTGNPGNATDRSATRENVSNRVTGRSTPTRSADK 454

Query: 455 AGSR 458
           AGSR
Sbjct: 455 AGSR 458


>tr|A1T7X2|A1T7X2_MYCVP Tax_Id=350058 SubName: Full=PE_PGRS family
           protein;[Mycobacterium vanbaalenii]
          Length = 557

 Score = 36.6 bits (83), Expect = 8.7
 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 14/50 (28%)

Query: 117 APKTSTSGTALTVTPIAVGMVGNAKVTVAVDSSGRPMIGPGGWLIGNGIE 166
           +PK   SG A    P      G A V        RPMIGPGGWLIG+G +
Sbjct: 85  SPKRDRSGPATAAAP------GVAAV--------RPMIGPGGWLIGDGAD 120


  Database: Amellifera_nr
    Posted date:  Jul 23, 2010  5:10 AM
  Number of letters in database: 4,236,830,644
  Number of sequences in database:  12,507,864
  
Lambda     K      H
   0.308    0.124    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 12507864
Number of Hits to DB: 1,576,305,701
Number of extensions: 45213498
Number of successful extensions: 106338
Number of sequences better than 10.0: 2
Number of HSP's gapped: 106758
Number of HSP's successfully gapped: 3
Length of query: 506
Length of database: 4,236,830,644
Length adjustment: 143
Effective length of query: 363
Effective length of database: 2,448,206,092
Effective search space: 888698811396
Effective search space used: 888698811396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 83 (36.6 bits)