BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSMEG_3232
         (350 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           12,507,864 sequences; 4,236,830,644 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|A0QXA7|A0QXA7_MYCS2 Tax_Id=246196 (cydB)SubName: Full=Cytochr...   578   e-163
tr|Q9L8R6|Q9L8R6_MYCSM Tax_Id=1772 (cydB)SubName: Full=CydB;[Myc...   578   e-163
tr|D5P2V8|D5P2V8_9MYCO Tax_Id=525368 (cydB)SubName: Full=Cytochr...   399   e-109
tr|A3Q105|A3Q105_MYCSJ Tax_Id=164757 SubName: Full=Cytochrome d ...   393   e-107
tr|Q1B7J0|Q1B7J0_MYCSS Tax_Id=164756 SubName: Full=Cytochrome d ...   392   e-107
tr|A1UHI2|A1UHI2_MYCSK Tax_Id=189918 SubName: Full=Cytochrome d ...   392   e-107
tr|B2HQY9|B2HQY9_MYCMM Tax_Id=216594 (cydB)SubName: Full=Integra...   387   e-105
tr|Q740N5|Q740N5_MYCPA Tax_Id=1770 (cydB)SubName: Full=CydB;[Myc...   387   e-105
tr|A0QHG0|A0QHG0_MYCA1 Tax_Id=243243 (cydB)SubName: Full=Cytochr...   386   e-105
tr|Q7TZV5|Q7TZV5_MYCBO Tax_Id=1765 (cydB)SubName: Full=Probable ...   383   e-104
tr|O06139|O06139_MYCTU Tax_Id=1773 (cydB)SubName: Full=Cytochrom...   383   e-104
tr|C6DS51|C6DS51_MYCTK Tax_Id=478434 SubName: Full=Membrane cyto...   383   e-104
tr|C1ANP4|C1ANP4_MYCBT Tax_Id=561275 (cydB)SubName: Full=Putativ...   383   e-104
tr|A5WMU2|A5WMU2_MYCTF Tax_Id=336982 SubName: Full=Integral memb...   383   e-104
tr|A5U2X8|A5U2X8_MYCTA Tax_Id=419947 (cydB)SubName: Full=Cytochr...   383   e-104
tr|A1KJ38|A1KJ38_MYCBP Tax_Id=410289 (cydB)SubName: Full=Probabl...   383   e-104
tr|D6G8N0|D6G8N0_MYCTU Tax_Id=478435 SubName: Full=Membrane cyto...   383   e-104
tr|D6FHP4|D6FHP4_MYCTU Tax_Id=611303 SubName: Full=Membrane cyto...   383   e-104
tr|D6F8Y4|D6F8Y4_MYCTU Tax_Id=611302 SubName: Full=Cytochrome d ...   383   e-104
tr|D5ZHB2|D5ZHB2_MYCTU Tax_Id=537210 SubName: Full=Membrane cyto...   383   e-104
tr|D5YTC5|D5YTC5_MYCTU Tax_Id=515616 SubName: Full=Integral memb...   383   e-104
tr|D5YFC9|D5YFC9_MYCTU Tax_Id=520140 SubName: Full=Integral memb...   383   e-104
tr|D5Y3R6|D5Y3R6_MYCTU Tax_Id=520141 SubName: Full=Integral memb...   383   e-104
tr|D5XTP3|D5XTP3_MYCTU Tax_Id=515617 SubName: Full=Membrane cyto...   383   e-104
tr|A4KHE6|A4KHE6_MYCTU Tax_Id=395095 SubName: Full=Integral memb...   383   e-104
tr|A2VIB1|A2VIB1_MYCTU Tax_Id=348776 SubName: Full=Integral memb...   383   e-104
tr|D6FTE3|D6FTE3_MYCTU Tax_Id=611304 SubName: Full=Membrane cyto...   382   e-104
tr|A1T8Y6|A1T8Y6_MYCVP Tax_Id=350058 SubName: Full=Cytochrome d ...   380   e-103
tr|A0PP39|A0PP39_MYCUA Tax_Id=362242 (cydB)SubName: Full=Integra...   377   e-102
tr|A4T9Q3|A4T9Q3_MYCGI Tax_Id=350054 SubName: Full=Cytochrome d ...   369   e-100
tr|C1ATB4|C1ATB4_RHOOB Tax_Id=632772 (cydB)SubName: Full=Cytochr...   363   1e-98
tr|Q0S753|Q0S753_RHOSR Tax_Id=101510 SubName: Full=Cytochrome bd...   359   3e-97
tr|C0ZP29|C0ZP29_RHOE4 Tax_Id=234621 (cydB)SubName: Full=Cytochr...   358   6e-97
tr|B1MBU0|B1MBU0_MYCA9 Tax_Id=561007 SubName: Full=Probable cyto...   358   8e-97
tr|C3JEJ6|C3JEJ6_RHOER Tax_Id=596309 (cydB)SubName: Full=Cytochr...   358   8e-97
tr|Q5Z2B0|Q5Z2B0_NOCFA Tax_Id=37329 SubName: Full=Putative cytoc...   353   2e-95
tr|D5PYF1|D5PYF1_COREQ Tax_Id=525370 (cydB)SubName: Full=Cytochr...   341   1e-91
tr|D5Z4A1|D5Z4A1_MYCTU Tax_Id=537209 SubName: Full=Cytochrome d ...   335   4e-90
tr|D0L442|D0L442_GORB4 Tax_Id=526226 SubName: Full=Cytochrome d ...   325   7e-87
tr|D1BV47|D1BV47_XYLCX Tax_Id=446471 SubName: Full=Cytochrome d ...   297   1e-78
tr|D5UGS9|D5UGS9_9CELL Tax_Id=446466 SubName: Full=Cytochrome d ...   297   2e-78
tr|Q6NFI9|Q6NFI9_CORDI Tax_Id=1717 SubName: Full=Putative cytoch...   296   4e-78
tr|Q47S92|Q47S92_THEFY Tax_Id=269800 SubName: Full=Cytochrome bd...   294   1e-77
tr|D5UXC8|D5UXC8_TSUPA Tax_Id=521096 SubName: Full=Cytochrome d ...   294   1e-77
tr|C7QYR4|C7QYR4_JONDD Tax_Id=471856 SubName: Full=Cytochrome d ...   293   2e-77

>tr|A0QXA7|A0QXA7_MYCS2 Tax_Id=246196 (cydB)SubName: Full=Cytochrome
           D ubiquinol oxidase, subunit II;
           EC=1.10.3.-;[Mycobacterium smegmatis]
          Length = 350

 Score =  578 bits (1489), Expect = e-163
 Identities = 289/350 (82%), Positives = 289/350 (82%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQELW                      MLMSFFGRAAEKRGQDPEPYRRAALNTIGPV
Sbjct: 1   MGLQELWFILLAVLFLGFFLLEGFDFGVGMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR
Sbjct: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
           RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL
Sbjct: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           FAFHGAVFVSLKTSGEIRTDAFGF              FGVWTQVAHGTGWTW       
Sbjct: 181 FAFHGAVFVSLKTSGEIRTDAFGFARLLALPATALVAAFGVWTQVAHGTGWTWIVLAAAV 240

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     FRGSGEGWAFGATS        LLFGSLFPDLIPSTLNPDWSLTIYNGSS
Sbjct: 241 IAQLVAVAQVFRGSGEGWAFGATSVVVAAVVVLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRSS 350
           SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRSS
Sbjct: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRSS 350


>tr|Q9L8R6|Q9L8R6_MYCSM Tax_Id=1772 (cydB)SubName:
           Full=CydB;[Mycobacterium smegmatis]
          Length = 350

 Score =  578 bits (1489), Expect = e-163
 Identities = 289/350 (82%), Positives = 289/350 (82%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQELW                      MLMSFFGRAAEKRGQDPEPYRRAALNTIGPV
Sbjct: 1   MGLQELWFILLAVLFLGFFLLEGFDFGVGMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR
Sbjct: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
           RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL
Sbjct: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           FAFHGAVFVSLKTSGEIRTDAFGF              FGVWTQVAHGTGWTW       
Sbjct: 181 FAFHGAVFVSLKTSGEIRTDAFGFARLLALPATALVAAFGVWTQVAHGTGWTWIVLAAAV 240

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     FRGSGEGWAFGATS        LLFGSLFPDLIPSTLNPDWSLTIYNGSS
Sbjct: 241 IAQLVAVAQVFRGSGEGWAFGATSVVVAAVVVLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRSS 350
           SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRSS
Sbjct: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRSS 350


>tr|D5P2V8|D5P2V8_9MYCO Tax_Id=525368 (cydB)SubName: Full=Cytochrome
           D ubiquinol oxidase subunit II;
           EC=1.10.3.-;[Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 346

 Score =  399 bits (1025), Expect = e-109
 Identities = 203/350 (58%), Positives = 230/350 (65%), Gaps = 4/350 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQE W                      MLM    R       +PEP RR ALNTIGPV
Sbjct: 1   MGLQEFWFGVIGLLFLGFFILEGFDFGVGMLMEPLARVGIG---EPEPLRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLI  G AMFAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDD  WR
Sbjct: 58  WDGNEVWLIVGGAAMFAAFPGWYATVFSTLYLPLLAILFGMILRAVAIEWRGKIDDTKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
            WAD GIA GSW+PA+LWGVAFA LVRGLPVDA  Q+HLS   D+LNAYTLLGGLAT  L
Sbjct: 118 GWADFGIAAGSWLPAVLWGVAFAILVRGLPVDAAGQVHLS-ITDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F  +GAVF++LKTSG IR DA+ F              FG+WTQ+AHG  WTW       
Sbjct: 177 FLLYGAVFIALKTSGAIRDDAYRFAVWLSLPVTALVAGFGLWTQLAHGKNWTWLVLAVAV 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R + +GWAF  T+        LLFGSL+P+L+PSTLN  WSLTIYN SS
Sbjct: 237 VAQLAAVLLVWRRASDGWAFACTAIVVAAVVILLFGSLYPNLVPSTLNKQWSLTIYNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRSS 350
           + YTLK+MTW  ++ APL VVYQ WTYWVF KRISA+RIPAPIGL+RR+S
Sbjct: 297 THYTLKVMTWVTVIMAPLTVVYQAWTYWVFRKRISAERIPAPIGLARRAS 346


>tr|A3Q105|A3Q105_MYCSJ Tax_Id=164757 SubName: Full=Cytochrome d
           ubiquinol oxidase, subunit II; Flags:
           Precursor;[Mycobacterium sp.]
          Length = 347

 Score =  393 bits (1009), Expect = e-107
 Identities = 197/349 (56%), Positives = 236/349 (67%), Gaps = 3/349 (0%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQELW                      MLM+  G   E     PE  RRA LNTIGPV
Sbjct: 1   MGLQELWFILIAALFLGFLVLEGFDFGVGMLMAPMGMVGEGT---PETRRRAVLNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WD NEVWLITAG +MFAAFP  YA++FS LYL LL IL  MILRIV IEWRGKIDDP WR
Sbjct: 58  WDANEVWLITAGASMFAAFPVWYATVFSALYLPLLAILFGMILRIVGIEWRGKIDDPTWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
           R AD GIA+GSW+PAILWGVAFA LVRGLPVDA++Q+    FGD++NAYTLLGGLATC+L
Sbjct: 118 RRADWGIALGSWLPAILWGVAFAVLVRGLPVDAEQQVVGLTFGDVVNAYTLLGGLATCSL 177

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F F+G+ F++LKTSG +R DAF F              FG+WTQ+A+G  WTW       
Sbjct: 178 FLFYGSTFLALKTSGPVRDDAFRFARILSAPVIVLAGGFGLWTQLAYGKPWTWAALAAAV 237

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     + G  EGWAF +T         L+FG+L+P L+ STLNP+W +TI+NGSS
Sbjct: 238 VALLVAVALMWTGGREGWAFVSTVVVVAAVATLIFGTLYPYLLNSTLNPEWGVTIFNGSS 297

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIM+WA+L   PLV++YQGWTYWVF +RISADRIP  +GLS+++
Sbjct: 298 TPYTLKIMSWASLTLLPLVLIYQGWTYWVFRQRISADRIPESVGLSKQA 346


>tr|Q1B7J0|Q1B7J0_MYCSS Tax_Id=164756 SubName: Full=Cytochrome d
           ubiquinol oxidase, subunit II; Flags:
           Precursor;[Mycobacterium sp.]
          Length = 347

 Score =  392 bits (1007), Expect = e-107
 Identities = 197/349 (56%), Positives = 236/349 (67%), Gaps = 3/349 (0%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQELW                      MLM+  G   E     PE  RRA LNTIGPV
Sbjct: 1   MGLQELWFILIAALFLGFLVLEGFDFGVGMLMAPMGIVGEGT---PETRRRAVLNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WD NEVWLITAG +MFAAFP  YA++FS LYL LL IL  MILRIV IEWRGKIDDP WR
Sbjct: 58  WDANEVWLITAGASMFAAFPVWYATVFSALYLPLLAILFGMILRIVGIEWRGKIDDPTWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
           R AD GIA+GSW+PAILWGVAFA LVRGLPVDA++Q+    FGD++NAYTLLGGLATC+L
Sbjct: 118 RRADWGIALGSWLPAILWGVAFAVLVRGLPVDAEQQVVGLTFGDVVNAYTLLGGLATCSL 177

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F F+G+ F++LKTSG +R DAF F              FG+WTQ+A+G  WTW       
Sbjct: 178 FLFYGSTFLALKTSGPVRDDAFRFVRILSAPVIVLAGGFGLWTQLAYGKPWTWAALAAAV 237

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     + G  EGWAF +T         L+FG+L+P L+ STLNP+W +TI+NGSS
Sbjct: 238 VALLVAVALMWTGGREGWAFVSTVVVVAAVATLIFGTLYPYLLNSTLNPEWGVTIFNGSS 297

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIM+WA+L   PLV++YQGWTYWVF +RISADRIP  +GLS+++
Sbjct: 298 TPYTLKIMSWASLTLLPLVLIYQGWTYWVFRQRISADRIPESVGLSKQA 346


>tr|A1UHI2|A1UHI2_MYCSK Tax_Id=189918 SubName: Full=Cytochrome d
           ubiquinol oxidase, subunit II; Flags:
           Precursor;[Mycobacterium sp.]
          Length = 347

 Score =  392 bits (1007), Expect = e-107
 Identities = 197/349 (56%), Positives = 236/349 (67%), Gaps = 3/349 (0%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQELW                      MLM+  G   E     PE  RRA LNTIGPV
Sbjct: 1   MGLQELWFILIAALFLGFLVLEGFDFGVGMLMAPMGIVGEGT---PETRRRAVLNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WD NEVWLITAG +MFAAFP  YA++FS LYL LL IL  MILRIV IEWRGKIDDP WR
Sbjct: 58  WDANEVWLITAGASMFAAFPVWYATVFSALYLPLLAILFGMILRIVGIEWRGKIDDPTWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
           R AD GIA+GSW+PAILWGVAFA LVRGLPVDA++Q+    FGD++NAYTLLGGLATC+L
Sbjct: 118 RRADWGIALGSWLPAILWGVAFAVLVRGLPVDAEQQVVGLTFGDVVNAYTLLGGLATCSL 177

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F F+G+ F++LKTSG +R DAF F              FG+WTQ+A+G  WTW       
Sbjct: 178 FLFYGSTFLALKTSGPVRDDAFRFVRILSAPVIVLAGGFGLWTQLAYGKPWTWAALAAAV 237

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     + G  EGWAF +T         L+FG+L+P L+ STLNP+W +TI+NGSS
Sbjct: 238 VALLVAVALMWTGGREGWAFVSTVVVVAAVATLIFGTLYPYLLNSTLNPEWGVTIFNGSS 297

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIM+WA+L   PLV++YQGWTYWVF +RISADRIP  +GLS+++
Sbjct: 298 TPYTLKIMSWASLTLLPLVLIYQGWTYWVFRQRISADRIPESVGLSKQA 346


>tr|B2HQY9|B2HQY9_MYCMM Tax_Id=216594 (cydB)SubName: Full=Integral
           membrane cytochrome D ubiquinol oxidase (Subunit II)
           CydB;[Mycobacterium marinum]
          Length = 346

 Score =  387 bits (994), Expect = e-105
 Identities = 201/350 (57%), Positives = 230/350 (65%), Gaps = 4/350 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MGLQELWFAVIAVLFLGFFILEGFDFGVGMLMAPFAHFGTG---DPEIHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLIT G AMFAAFP  YA++FS LYL LL IL  MI+R VAIEWRGK+DDP WR
Sbjct: 58  WDGNEVWLITGGAAMFAAFPGWYATVFSTLYLPLLAILFGMIVRSVAIEWRGKVDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PAILWGVAFA LVRGLPVDAD  + LS  GD+LNAYTLLGGLAT  L
Sbjct: 118 ALADFGIAAGSWLPAILWGVAFAILVRGLPVDADGHVALS-IGDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F F+GAVFV+LKT+G IR DA+ F              FGVWTQ+A+G  WTW       
Sbjct: 177 FLFYGAVFVALKTAGPIRDDAYRFAVVLSLPVTVLVAGFGVWTQLAYGKQWTWALLGVAV 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF   +        LLFG+L+P+L+PSTLN  W++TIYN SS
Sbjct: 237 VAQLAAVLLVWRRVSDGWAFLCIAVVVAAVVLLLFGALYPNLVPSTLNERWNVTIYNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRSS 350
           +PYTLKIMTW   +FAPL VVYQ WTYWVF +RISA+RIP  IGL+RR S
Sbjct: 297 TPYTLKIMTWVTALFAPLTVVYQAWTYWVFRQRISAERIPPSIGLARRPS 346


>tr|Q740N5|Q740N5_MYCPA Tax_Id=1770 (cydB)SubName:
           Full=CydB;[Mycobacterium paratuberculosis]
          Length = 346

 Score =  387 bits (993), Expect = e-105
 Identities = 197/350 (56%), Positives = 227/350 (64%), Gaps = 4/350 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQE+W                      MLM  F R       +PEP RR ALNTIGPV
Sbjct: 1   MGLQEVWFGIIGMLFLGFFILEGFDFGVGMLMEPFARVGIG---EPEPLRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLI  G AMFAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDD  WR
Sbjct: 58  WDGNEVWLIVGGAAMFAAFPGWYATVFSTLYLPLLAILFGMILRAVAIEWRGKIDDTKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
            WAD GIA GSW+PA+LWGVAFA LVRGLPVDAD  IHLS   D+LN YTLLGGLAT  L
Sbjct: 118 GWADFGIAAGSWLPAVLWGVAFAVLVRGLPVDADGHIHLS-VTDVLNPYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F  +GAVFV+LKTSG IR DA+ F              FG+WTQ+ +G  WTW       
Sbjct: 177 FLLYGAVFVALKTSGAIRDDAYRFAVWLSLPVTGLVAGFGLWTQLGYGKNWTWLVLAVAV 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R + +GWAF   +        LLFG+L+P+L+PSTL+  WSLTIYN SS
Sbjct: 237 VAQVAAVLLVWRRASDGWAFTCLALVVAAVVILLFGALYPNLVPSTLDSRWSLTIYNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRSS 350
           + YTLK+MTW   + AP+ VVYQ WTYWVF +R+SADRIPAP+GL+RR S
Sbjct: 297 THYTLKVMTWVTAIMAPVTVVYQAWTYWVFRQRLSADRIPAPVGLTRRPS 346


>tr|A0QHG0|A0QHG0_MYCA1 Tax_Id=243243 (cydB)SubName: Full=Cytochrome
           D ubiquinol oxidase, subunit II;
           EC=1.10.3.-;[Mycobacterium avium]
          Length = 346

 Score =  386 bits (992), Expect = e-105
 Identities = 197/350 (56%), Positives = 227/350 (64%), Gaps = 4/350 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQE+W                      MLM  F R       +PEP RR ALNTIGPV
Sbjct: 1   MGLQEVWFGIIGMLFLGFFILEGFDFGVGMLMEPFARVGIG---EPEPLRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLI  G AMFAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDD  WR
Sbjct: 58  WDGNEVWLIVGGAAMFAAFPGWYATVFSTLYLPLLAILFGMILRAVAIEWRGKIDDTKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
            WAD GIA GSW+PA+LWGVAFA LVRGLPVDAD  IHLS   D+LN YTLLGGLAT  L
Sbjct: 118 GWADFGIAAGSWLPAVLWGVAFAVLVRGLPVDADGHIHLS-VTDVLNPYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F  +GAVFV+LKTSG IR DA+ F              FG+WTQ+ +G  WTW       
Sbjct: 177 FLLYGAVFVALKTSGAIRDDAYRFAVWLSLPVTGLVAGFGLWTQLGYGKDWTWLVLAVAV 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R + +GWAF   +        LLFG+L+P+L+PSTL+  WSLTIYN SS
Sbjct: 237 VAQVAAVLLVWRRASDGWAFTCLALVVAAVVILLFGALYPNLVPSTLDSRWSLTIYNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRSS 350
           + YTLK+MTW   + AP+ VVYQ WTYWVF +R+SADRIPAP+GL+RR S
Sbjct: 297 THYTLKVMTWVTAIMAPVTVVYQAWTYWVFRQRLSADRIPAPVGLTRRPS 346


>tr|Q7TZV5|Q7TZV5_MYCBO Tax_Id=1765 (cydB)SubName: Full=Probable
           integral membrane cytochrome D ubiquinol oxidase
           (Subunit II) cydB (Cytochrome BD-I oxidase subunit II);
           EC=1.10.3.-;[Mycobacterium bovis]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|O06139|O06139_MYCTU Tax_Id=1773 (cydB)SubName: Full=Cytochrome d
           ubiquinol oxidase, subunit II; EC=1.10.3.-; SubName:
           Full=Probable integral membrane cytochrome D ubiquinol
           oxidase (Subunit II) cydB (Cytochrome BD-I oxidase
           subunit II); EC=1.10.3.-;[Mycobacterium tuberculosis]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|C6DS51|C6DS51_MYCTK Tax_Id=478434 SubName: Full=Membrane
           cytochrome D ubiquinol oxidase subunit II
           cydB;[Mycobacterium tuberculosis]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|C1ANP4|C1ANP4_MYCBT Tax_Id=561275 (cydB)SubName: Full=Putative
           integral membrane cytochrome d ubiquinol oxidase subunit
           II;[Mycobacterium bovis]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|A5WMU2|A5WMU2_MYCTF Tax_Id=336982 SubName: Full=Integral
           membrane cytochrome D ubiquinol oxidase subunit II
           cydB;[Mycobacterium tuberculosis]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|A5U2X8|A5U2X8_MYCTA Tax_Id=419947 (cydB)SubName: Full=Cytochrome
           d ubiquinol oxidase subunit II;[Mycobacterium
           tuberculosis]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|A1KJ38|A1KJ38_MYCBP Tax_Id=410289 (cydB)SubName: Full=Probable
           integral membrane cytochrome D ubiquinol oxidase
           (Subunit II) cydB; EC=1.10.3.-;[Mycobacterium bovis]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|D6G8N0|D6G8N0_MYCTU Tax_Id=478435 SubName: Full=Membrane
           cytochrome D ubiquinol oxidase subunit II
           cydB;[Mycobacterium tuberculosis KZN 605]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|D6FHP4|D6FHP4_MYCTU Tax_Id=611303 SubName: Full=Membrane
           cytochrome D ubiquinol oxidase subunit II
           cydB;[Mycobacterium tuberculosis CPHL_A]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|D6F8Y4|D6F8Y4_MYCTU Tax_Id=611302 SubName: Full=Cytochrome d
           ubiquinol oxidase, subunit II;[Mycobacterium
           tuberculosis T46]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|D5ZHB2|D5ZHB2_MYCTU Tax_Id=537210 SubName: Full=Membrane
           cytochrome D ubiquinol oxidase subunit II
           cydB;[Mycobacterium tuberculosis T17]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|D5YTC5|D5YTC5_MYCTU Tax_Id=515616 SubName: Full=Integral
           membrane cytochrome D ubiquinol oxidase subunit II
           cydB;[Mycobacterium tuberculosis 02_1987]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|D5YFC9|D5YFC9_MYCTU Tax_Id=520140 SubName: Full=Integral
           membrane cytochrome D ubiquinol oxidase subunit II
           cydB;[Mycobacterium tuberculosis EAS054]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|D5Y3R6|D5Y3R6_MYCTU Tax_Id=520141 SubName: Full=Integral
           membrane cytochrome D ubiquinol oxidase subunit II
           cydB;[Mycobacterium tuberculosis T85]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|D5XTP3|D5XTP3_MYCTU Tax_Id=515617 SubName: Full=Membrane
           cytochrome D ubiquinol oxidase subunit II
           cydB;[Mycobacterium tuberculosis T92]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|A4KHE6|A4KHE6_MYCTU Tax_Id=395095 SubName: Full=Integral
           membrane cytochrome D ubiquinol oxidase (Subunit II)
           cydB;[Mycobacterium tuberculosis str. Haarlem]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|A2VIB1|A2VIB1_MYCTU Tax_Id=348776 SubName: Full=Integral
           membrane cytochrome D ubiquinol oxidase (Subunit II)
           cydB;[Mycobacterium tuberculosis C]
          Length = 346

 Score =  383 bits (984), Expect = e-104
 Identities = 198/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|D6FTE3|D6FTE3_MYCTU Tax_Id=611304 SubName: Full=Membrane
           cytochrome D ubiquinol oxidase subunit II
           cydB;[Mycobacterium tuberculosis K85]
          Length = 346

 Score =  382 bits (980), Expect = e-104
 Identities = 197/349 (56%), Positives = 228/349 (65%), Gaps = 4/349 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  +ILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGIILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRS 349
           +PYTLKIMTW    FAPL V YQ WTYWVF +RISA+RIP P GL+RR+
Sbjct: 297 TPYTLKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRA 345


>tr|A1T8Y6|A1T8Y6_MYCVP Tax_Id=350058 SubName: Full=Cytochrome d
           ubiquinol oxidase, subunit II;[Mycobacterium
           vanbaalenii]
          Length = 346

 Score =  380 bits (977), Expect = e-103
 Identities = 191/350 (54%), Positives = 233/350 (66%), Gaps = 4/350 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQELW                      MLMS  G        DP+  RRA LNTIGPV
Sbjct: 1   MGLQELWFLLIAVLFLGFLVLEGFDFGVGMLMSPMGTIGPG---DPDDRRRAVLNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WD NEVWLITAG AMFAAFP  YA++FS LYL LL IL  MILRIV IEWRGKI+DP WR
Sbjct: 58  WDANEVWLITAGAAMFAAFPNWYATLFSALYLPLLAILFGMILRIVGIEWRGKINDPQWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
           RWAD GIA+GSW+PA+LWGVAFA L+RGLP+DAD + H    GD+L+AYTLLGGLAT +L
Sbjct: 118 RWADIGIALGSWLPAVLWGVAFAILLRGLPIDADGRAHPG-IGDILSAYTLLGGLATASL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F F+G+V+++L+T+G +  D+F                FG+WTQ+A+G  WTW       
Sbjct: 177 FLFYGSVYLALRTAGALHDDSFRVARVLSLPVIVLAGGFGLWTQLAYGKPWTWLALAVAV 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     ++G  EG AF +          L+FGS++P+L+PSTLNP+WS+TIYNGSS
Sbjct: 237 VALLISVALVWKGFREGVAFVSMVVVIAAVAVLIFGSMYPNLLPSTLNPEWSVTIYNGSS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRSS 350
           +PYTL+IMTWA+L   PLV+ YQ W+YWVF KRI+A+ IPA IGLSRR S
Sbjct: 297 TPYTLRIMTWASLTLLPLVLAYQAWSYWVFRKRITAESIPASIGLSRRPS 346


>tr|A0PP39|A0PP39_MYCUA Tax_Id=362242 (cydB)SubName: Full=Integral
           membrane cytochrome D ubiquinol oxidase (Subunit II)
           CydB;[Mycobacterium ulcerans]
          Length = 538

 Score =  377 bits (967), Expect = e-102
 Identities = 195/345 (56%), Positives = 227/345 (65%), Gaps = 4/345 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MGLQELWFAVIAVLFLGFFILEGFDFGVGMLMAPFAHFGTG---DPEIHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLIT+G AMFAAFP  YA++FS LYL LL IL  MI+R VAIEWRGK+DD  WR
Sbjct: 58  WDGNEVWLITSGAAMFAAFPGWYATVFSTLYLPLLAILFGMIVRSVAIEWRGKVDDSKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PAILWGVAFA LVRGLPVDA+ ++ LS  GD+LNAYTLLGGLAT  L
Sbjct: 118 ALADFGIAAGSWLPAILWGVAFAILVRGLPVDANGRLALS-IGDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F F+GAVFV+LKT+G IR DA+ F              FGVWTQ+A+G  WTW       
Sbjct: 177 FLFYGAVFVALKTAGPIRDDAYRFAVVLSLPVTVLVAGFGVWTQLAYGKQWTWALLGVAV 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF   +        LLFG+L+P+L+PSTLN  W++T+YN SS
Sbjct: 237 VAQMAAVLLVWRRVSDGWAFLCIAVVVAAVVLLLFGALYPNLVPSTLNERWNVTVYNASS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGL 345
           +PYTLKIMTW   +FAPL VVYQ WTYWVF +RISA+RIP  IGL
Sbjct: 297 TPYTLKIMTWVTALFAPLTVVYQAWTYWVFRQRISAERIPPSIGL 341


>tr|A4T9Q3|A4T9Q3_MYCGI Tax_Id=350054 SubName: Full=Cytochrome d
           ubiquinol oxidase, subunit II;[Mycobacterium gilvum]
          Length = 346

 Score =  369 bits (947), Expect = e-100
 Identities = 187/350 (53%), Positives = 232/350 (66%), Gaps = 4/350 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQE+W                      MLM+  G        DP+  RRA LNTIGPV
Sbjct: 1   MGLQEVWFLLIAVLFLGFLVLEGFDFGVGMLMAPMGTLGPG---DPDNRRRAVLNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WD NEVWLITAG AMFAAFP  YA++FS LYL LL IL  MILRIV IEWRGKI+DP WR
Sbjct: 58  WDANEVWLITAGAAMFAAFPVWYATLFSALYLPLLAILFGMILRIVGIEWRGKINDPQWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
           RWAD GIA GSW+PA+LWGVAFA L+RGLP+DA+ +  ++ FGD+L+ YTLLGGLAT +L
Sbjct: 118 RWADYGIAAGSWLPAVLWGVAFAILLRGLPIDAEGRTDIA-FGDVLSPYTLLGGLATGSL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F F+G+V+++LKTSG +R DAF                FG+WTQ+A+G  WTW       
Sbjct: 177 FLFYGSVYLALKTSGVLREDAFRVGKALSVPVIVLAGGFGLWTQLAYGRPWTWIALAAAV 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +  + EG AF +          L+FGS++P+L+PSTLNP+WS+TIYNGSS
Sbjct: 237 VALLAAVALMWGQTREGIAFVSMVVVIAAVAVLIFGSMYPNLLPSTLNPEWSVTIYNGSS 296

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRRSS 350
           +PYTL+IMTWA+L   PLV+ YQ W+YWVF KR++A+ IP  IGL+RR S
Sbjct: 297 TPYTLRIMTWASLALLPLVLGYQAWSYWVFRKRVTAESIPESIGLTRRVS 346


>tr|C1ATB4|C1ATB4_RHOOB Tax_Id=632772 (cydB)SubName: Full=Cytochrome
           bd-type menaquinol oxidase subunit II;
           EC=1.10.3.-;[Rhodococcus opacus]
          Length = 345

 Score =  363 bits (933), Expect = 1e-98
 Identities = 188/345 (54%), Positives = 221/345 (64%), Gaps = 5/345 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQE+W                      MLM   GR  +  G   +  RR  LNTIGPV
Sbjct: 1   MGLQEVWFILIAVLFIGYFVLEGFDFGVGMLMPVLGRRKDPEG---DTRRRVVLNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLIT GGA+FAAFPE YA++FSG YL LL+IL A+I+RI AIE+RGKIDD  WR
Sbjct: 58  WDGNEVWLITGGGALFAAFPEWYATLFSGFYLPLLIILVALIVRICAIEYRGKIDDDTWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
           R  D GI  GSWVPA+LWGVAFA++VRG+ +DADKQ+  + F DLLN Y LLGGL T  +
Sbjct: 118 RRCDWGIVFGSWVPAVLWGVAFANIVRGVDIDADKQVTSNLF-DLLNPYALLGGLTTALV 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           FA HGAVF++LKT+ E+RTDA                 F +WTQ+AHGTGWTW       
Sbjct: 177 FALHGAVFLALKTADEVRTDAVELASRLALPAVPVAGAFVLWTQLAHGTGWTWFLVVIAA 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                      R   EGWAF  TS        LLFGSLFPD++PSTL+  +SLTI N SS
Sbjct: 237 GALLGVVAFT-RAEREGWAFLLTSIAVIATVALLFGSLFPDVMPSTLDAAYSLTIENASS 295

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGL 345
           SPYTLK+MTWAA    P+V++YQGWTYWVF +RIS   IP  IGL
Sbjct: 296 SPYTLKVMTWAAAFLTPVVLIYQGWTYWVFRQRISTKHIPPSIGL 340


>tr|Q0S753|Q0S753_RHOSR Tax_Id=101510 SubName: Full=Cytochrome bd
           ubiquinol oxidase subunit II;[Rhodococcus sp.]
          Length = 345

 Score =  359 bits (921), Expect = 3e-97
 Identities = 186/345 (53%), Positives = 220/345 (63%), Gaps = 5/345 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQE+W                      MLM   GR  +  G   +  RR  LNTIGPV
Sbjct: 1   MGLQEVWFILIAVLFIGYFVLEGFDFGVGMLMPVLGRRKDPNG---DTRRRVVLNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLIT GGA+FAAFPE YA++FSG YL LL+IL A+I+RI AIE+RGKIDD  WR
Sbjct: 58  WDGNEVWLITGGGALFAAFPEWYATLFSGFYLPLLIILVALIVRICAIEYRGKIDDDTWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
           R  D GI  GSWVPA+LWGVAFA++VRG+ +DADKQ+  S F DLLN Y LLGGL T  +
Sbjct: 118 RRCDWGIVFGSWVPAVLWGVAFANIVRGVDIDADKQVTSSLF-DLLNPYALLGGLTTALV 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           FA HGAVF++LKT+ E+RTDA                 F +WTQ+AHG GWTW       
Sbjct: 177 FALHGAVFLALKTADEVRTDAVELASRLAIPAVPVAGAFVLWTQLAHGKGWTWILVAIAA 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                      R   EGWAF  TS        LLFGSLFP+++PSTL+  ++LTI N SS
Sbjct: 237 AALLGVVAFT-RAEREGWAFLLTSIAVIATVALLFGSLFPNVMPSTLDAAYNLTIDNASS 295

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGL 345
           SPYTLK+MTWAA    P+V++YQGWTYWVF +RIS   IP  IGL
Sbjct: 296 SPYTLKVMTWAAAFLTPVVLIYQGWTYWVFRQRISTKHIPPSIGL 340


>tr|C0ZP29|C0ZP29_RHOE4 Tax_Id=234621 (cydB)SubName: Full=Cytochrome
           bd-type menaquinol oxidase subunit II;
           EC=1.10.3.-;[Rhodococcus erythropolis]
          Length = 347

 Score =  358 bits (919), Expect = 6e-97
 Identities = 185/345 (53%), Positives = 222/345 (64%), Gaps = 5/345 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQE+W                      MLM   GR ++      +  RR ALNTIGPV
Sbjct: 1   MGLQEVWFVLVAVLFIGYFVLEGFDFGVGMLMPIVGRGSDLPA---DTRRRVALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAGGAMFAAFPE YA++FSG YL LL+IL A+I+RI AIEWR KIDD  WR
Sbjct: 58  WDGNEVWLITAGGAMFAAFPEWYATLFSGFYLPLLIILVALIVRICAIEWRSKIDDDKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
           +  D GI  GSWVPAILWGVAFA++VRG+ ++ADKQ+   FF DLLN Y LLGGL T  +
Sbjct: 118 QRCDWGIIFGSWVPAILWGVAFANIVRGVAINADKQVESGFF-DLLNPYALLGGLTTALV 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           FA HGAVF++LK++ E+R DA                 F +WTQ+A+G GWTW       
Sbjct: 177 FALHGAVFLALKSADEVREDAVKIAARLAIPAIPVAGGFVLWTQLAYGKGWTWILVAAAA 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                      R   EGWAF  T         LLF SLFP+++PSTL+P +SLTI N SS
Sbjct: 237 AALIGVVFLT-RAEREGWAFVLTCVAVIATVVLLFASLFPNVMPSTLDPAYSLTIENASS 295

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGL 345
           SPYTLK+MTWAA    P+V++YQGWTYWVF +RIS+ +IPA IGL
Sbjct: 296 SPYTLKVMTWAAAFMTPVVIIYQGWTYWVFRQRISSKQIPASIGL 340


>tr|B1MBU0|B1MBU0_MYCA9 Tax_Id=561007 SubName: Full=Probable
           cytochrome D ubiquinol oxydase CydB;[Mycobacterium
           abscessus]
          Length = 342

 Score =  358 bits (918), Expect = 8e-97
 Identities = 181/319 (56%), Positives = 221/319 (69%), Gaps = 9/319 (2%)

Query: 30  MLMSFFGRAAEKRGQDPEPYRRAALNTIGPVWDGNEVWLITAGGAMFAAFPEMYASMFSG 89
           MLM   GR  ++R       RRA LNTIGPVWDGNEVWLITAGGAMFAAFP  YA++FSG
Sbjct: 33  MLMHPLGRGDDRR-------RRAVLNTIGPVWDGNEVWLITAGGAMFAAFPHWYATVFSG 85

Query: 90  LYLALLVILCAMILRIVAIEWRGKIDDPGWRRWADTGIAVGSWVPAILWGVAFASLVRGL 149
           LYL LL+IL +MI+RIVAIEWRGKIDDP WR   D GIA+GSW+PA+LWGVAF+SL+ GL
Sbjct: 86  LYLPLLLILVSMIVRIVAIEWRGKIDDPRWRARCDLGIAIGSWIPALLWGVAFSSLLAGL 145

Query: 150 PVDADKQIHLSFFGDLLNAYTLLGGLATCALFAFHGAVFVSLKTSGEIRTDAFGFXXXXX 209
           PVD  KQ+ L+  GD+L  Y LLGG+    LFA HGA+F+ LKTSG +R DA  +     
Sbjct: 146 PVDGAKQLTLT-VGDVLRPYVLLGGVVFVGLFALHGALFICLKTSGVVRDDAVAWARKLA 204

Query: 210 XXXXXXXXXFGVWTQVAHGTGWTWXXXXXXXXXXXXXXXXXFRGSGEGWAFGATSXXXXX 269
                    +G+WTQ+A+G  WTW                  R S +GWAF  T      
Sbjct: 205 APVIVGAGGYGLWTQLAYGASWTWIALGTAALSLVAAALAS-RISRDGWAFACTCLTVVA 263

Query: 270 XXXLLFGSLFPDLIPSTLNPDWSLTIYNGSSSPYTLKIMTWAALVFAPLVVVYQGWTYWV 329
              LLFGSL+P+LI S L+P ++LTI N SSSPYTLK+M+WAA + AP+V+VYQGWTYWV
Sbjct: 264 VVALLFGSLYPNLIVSNLDPAYNLTIVNASSSPYTLKVMSWAAAITAPVVLVYQGWTYWV 323

Query: 330 FSKRISADRIPAPIGLSRR 348
           F +RISA++IP P+GL+ R
Sbjct: 324 FRQRISAEQIPDPVGLTVR 342


>tr|C3JEJ6|C3JEJ6_RHOER Tax_Id=596309 (cydB)SubName: Full=Cytochrome
           D ubiquinol oxidase, subunit II;
           EC=1.10.3.-;[Rhodococcus erythropolis SK121]
          Length = 347

 Score =  358 bits (918), Expect = 8e-97
 Identities = 184/345 (53%), Positives = 222/345 (64%), Gaps = 5/345 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQE+W                      MLM   GR ++      +  RR ALNTIGPV
Sbjct: 1   MGLQEVWFVLVAVLFIGYFVLEGFDFGVGMLMPIVGRGSDLPA---DTRRRVALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAGGAMFAAFPE YA++FSG YL LL+IL A+I+RI AIEWR KIDD  WR
Sbjct: 58  WDGNEVWLITAGGAMFAAFPEWYATLFSGFYLPLLIILVALIVRICAIEWRSKIDDDKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
           +  D GI  GSWVPA+LWGVAFA++VRG+ ++ADKQ+   FF DLLN Y LLGGL T  +
Sbjct: 118 QRCDWGIIFGSWVPAVLWGVAFANIVRGVAINADKQVESGFF-DLLNPYALLGGLTTALV 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           FA HGAVF++LK++ E+R DA                 F +WTQ+A+G GWTW       
Sbjct: 177 FALHGAVFLALKSADEVREDAVKIAARLAIPAIPVAGGFVLWTQLAYGKGWTWILVAAAA 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                      R   EGWAF  T         LLF SLFP+++PSTL+P +SLTI N SS
Sbjct: 237 AALIGVVFLT-RAEREGWAFVLTCVAVIATVVLLFASLFPNVMPSTLDPAYSLTIENASS 295

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGL 345
           SPYTLK+MTWAA    P+V++YQGWTYWVF +RIS+ +IPA IGL
Sbjct: 296 SPYTLKVMTWAAAFMTPVVIIYQGWTYWVFRQRISSKQIPASIGL 340


>tr|Q5Z2B0|Q5Z2B0_NOCFA Tax_Id=37329 SubName: Full=Putative
           cytochrome D ubiquinol oxidase subunit II;[Nocardia
           farcinica]
          Length = 343

 Score =  353 bits (906), Expect = 2e-95
 Identities = 179/348 (51%), Positives = 220/348 (63%), Gaps = 9/348 (2%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M L E W                      MLM   G+ ++ R       RRA LNTIGPV
Sbjct: 1   MSLAEFWFVLIGVLFTGYFVLEGFDFGVGMLMPVLGKGSDAR-------RRAVLNTIGPV 53

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAGGA+FAAFPE YASMFSG YLALL++L A+ILRI AIE+RGKIDDP WR
Sbjct: 54  WDGNEVWLITAGGALFAAFPEWYASMFSGFYLALLLVLVALILRICAIEYRGKIDDPRWR 113

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
              D GI +GSWVPA  WG  FA++VRG+P+DADKQ+ +   GDL + Y LLG LAT  L
Sbjct: 114 ARCDIGIGIGSWVPAFAWGWVFANIVRGVPLDADKQL-VGSIGDLFSPYALLGALATGLL 172

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           FA HGA+F+ LKT G++R DA                 FG+WTQ+A+G  WTW       
Sbjct: 173 FALHGAIFLGLKTGGDVRADAVRVAKLLLGPAALVVGGFGLWTQLAYGADWTWIPLGVAV 232

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     F    +GWAF  T+        LLFGSLFP+++PST++  +SLT+ N SS
Sbjct: 233 IGLVGAAAAVF-ADRDGWAFAGTALTVAAATVLLFGSLFPNVLPSTISDAFSLTVDNASS 291

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGLSRR 348
           +PYTLK+M+WAA+V  P+V+ YQ WTYWVF KRIS + IPAP+GL+ R
Sbjct: 292 TPYTLKVMSWAAVVVTPVVLGYQAWTYWVFRKRISVEHIPAPVGLTPR 339


>tr|D5PYF1|D5PYF1_COREQ Tax_Id=525370 (cydB)SubName: Full=Cytochrome
           D ubiquinol oxidase subunit II; EC=1.10.3.-;[Rhodococcus
           equi ATCC 33707]
          Length = 340

 Score =  341 bits (874), Expect = 1e-91
 Identities = 175/345 (50%), Positives = 218/345 (63%), Gaps = 10/345 (2%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           MGLQE W                      ML+   G+         E  RR  +NTIGPV
Sbjct: 1   MGLQEFWFILIAVLFVGYFVLEGFDYGVGMLLPVLGKT--------EIRRRVVINTIGPV 52

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLI  GGA+FAAFP+ YA++FSG YL LL+IL A+ILRI AIEWRGKIDD  WR
Sbjct: 53  WDGNEVWLIVGGGALFAAFPDWYATLFSGFYLPLLLILVALILRICAIEWRGKIDDDKWR 112

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GI +GSWVPA+LWGVAFA++VRG+ ++ADK++   FF DLLN Y LLGG+ T  +
Sbjct: 113 WRADLGIMIGSWVPAVLWGVAFANIVRGVAINADKKVTSGFF-DLLNPYALLGGITTGLV 171

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           FA HGAVF++LKT+ ++R DA                 F +WTQ+A+G GWTW       
Sbjct: 172 FALHGAVFIALKTADDVRIDAAELAKKLAIPAVPVAGGFVLWTQLAYGKGWTWILVALAA 231

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                      R   EGWAF  T+        LLF SL+P+++PST++  ++LTI N SS
Sbjct: 232 VAVLAVVFFT-RLEREGWAFVFTTLAIIGAVVLLFASLYPNVMPSTISDAYNLTIENASS 290

Query: 301 SPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGL 345
           SPYTLK+M+WAA++  P+V+VYQGWTYWVFSKRIS   IP  IGL
Sbjct: 291 SPYTLKVMSWAAVILVPVVLVYQGWTYWVFSKRISTKHIPPSIGL 335


>tr|D5Z4A1|D5Z4A1_MYCTU Tax_Id=537209 SubName: Full=Cytochrome d
           ubiquinol oxidase;[Mycobacterium tuberculosis GM 1503]
          Length = 332

 Score =  335 bits (860), Expect = 4e-90
 Identities = 176/317 (55%), Positives = 202/317 (63%), Gaps = 4/317 (1%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQDPEPYRRAALNTIGPV 60
           M LQELW                      MLM+ F         DPE +RR ALNTIGPV
Sbjct: 1   MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMG---DPETHRRTALNTIGPV 57

Query: 61  WDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKIDDPGWR 120
           WDGNEVWLITAG A+FAAFP  YA++FS LYL LL IL  MILR VAIEWRGKIDDP WR
Sbjct: 58  WDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWR 117

Query: 121 RWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYTLLGGLATCAL 180
             AD GIA GSW+PA+LWGVAFA LVRGLPVDA+  + LS   D+LNAYTLLGGLAT  L
Sbjct: 118 TGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALS-IPDVLNAYTLLGGLATAGL 176

Query: 181 FAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTGWTWXXXXXXX 240
           F+ +GAVF++LKTSG IR DA+ F              FG+WTQ+A+G  WTW       
Sbjct: 177 FSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAG 236

Query: 241 XXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSS 300
                     +R   +GWAF  T         LLFG+L+P+L+PSTLNP WSLTI+N SS
Sbjct: 237 CAQAAATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASS 296

Query: 301 SPYTLKIMTWAALVFAP 317
           +PYTLKIMTW    FAP
Sbjct: 297 TPYTLKIMTWVTAFFAP 313


>tr|D0L442|D0L442_GORB4 Tax_Id=526226 SubName: Full=Cytochrome d
           ubiquinol oxidase, subunit II;[Gordonia bronchialis]
          Length = 360

 Score =  325 bits (832), Expect = 7e-87
 Identities = 172/355 (48%), Positives = 213/355 (60%), Gaps = 13/355 (3%)

Query: 1   MGLQELWXXXXXXXXXXXXXXXXXXXXXXMLMSFFGRAAEKRGQD----------PEPYR 50
           MGL E W                      MLM F G +    G D          P+  R
Sbjct: 1   MGLPEFWFLVIAVLFVGYFVLEGFDFGVGMLMPFLGHS-HTGGDDVVAPTDELAGPDNRR 59

Query: 51  RAALNTIGPVWDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIEW 110
           RA LNTIGPVWDGNEVWLITAGGAMFAAF   YA+MF+  YL L +IL  +I+RI AIEW
Sbjct: 60  RAILNTIGPVWDGNEVWLITAGGAMFAAFGGWYATMFTAFYLPLFLILIGLIVRICAIEW 119

Query: 111 RGKIDDPGWRRWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAYT 170
           RGKID+P WR WAD GI +GSW+PA+LWGVAFA+++RG+P+DAD Q    FF +LLN Y 
Sbjct: 120 RGKIDNPRWRMWADIGIGLGSWIPALLWGVAFANVIRGIPIDADAQYTGGFF-NLLNPYA 178

Query: 171 LLGGLATCALFAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGTG 230
           LLGG  T   F  HGAVF++LKTSG ++ D+  +              F +WTQ+A+G G
Sbjct: 179 LLGGATTLLAFLTHGAVFLALKTSGVLQEDSMRYASRLAIPTLVVAAVFLLWTQLAYGNG 238

Query: 231 WTWXXXXXXXXXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNPD 290
           WTW                  +   EG AF ATS         LF  L+P+++PS+ +P 
Sbjct: 239 WTWIPVLIAAVAAVAMVIAT-QLRREGIAFLATSIAIAGTVAALFAVLYPNVLPSSTDPA 297

Query: 291 WSLTIYNGSSSPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGL 345
           ++LTI N SSS YTL +MTWAA++  P+V+ YQ WTYWVF +RIS D IPAP GL
Sbjct: 298 YNLTIANTSSSSYTLTVMTWAAVIVTPVVIGYQAWTYWVFRQRISVDHIPAPTGL 352


>tr|D1BV47|D1BV47_XYLCX Tax_Id=446471 SubName: Full=Cytochrome d
           ubiquinol oxidase, subunit II; EC=3.1.3.1;[Xylanimonas
           cellulosilytica]
          Length = 362

 Score =  297 bits (761), Expect = 1e-78
 Identities = 153/317 (48%), Positives = 198/317 (62%), Gaps = 6/317 (1%)

Query: 30  MLMSFFGRAAEKRGQDPEPYRRAALNTIGPVWDGNEVWLITAGGAMFAAFPEMYASMFSG 89
           ML+S F R   K+  D    RR  +NTIGPVWDGNEVWL+TAGGA FAAFPE YA++FSG
Sbjct: 30  MLLSIFPRGTAKQKHDE---RRVLINTIGPVWDGNEVWLLTAGGATFAAFPEWYATLFSG 86

Query: 90  LYLALLVILCAMILRIVAIEWRGKIDDPGWRRWADTGIAVGSWVPAILWGVAFASLVRGL 149
            Y+ LL+IL A+I+R+VA E+RGKI    W R  D  + +GSWVPA+LWGVAFA+LVRG+
Sbjct: 87  FYIPLLLILVALIVRVVAFEYRGKIASAVWARRFDVLLQIGSWVPAVLWGVAFANLVRGV 146

Query: 150 PVDADKQIHLSFFGDLLNAYTLLGGLATCALFAFHGAVFVSLKTSGEIRTDAFGFXXXXX 209
            +D D Q ++  F  LLN + LLGGL T  LF  HG+VF++LKT GE+R  A  F     
Sbjct: 147 QLDVDHQ-YVGGFWALLNPFALLGGLTTLVLFLLHGSVFLALKTDGELRLRARTFAARLS 205

Query: 210 XXXXXXXXXFGVWTQVAHGTGWTWXXXXXXXXXXXXXXXXXFRGSGEGWAFGATSXXXXX 269
                    + VW QVA    WTW                  RG  E WAF  ++     
Sbjct: 206 LAAVVIAGGWAVWAQVAFSVTWTWAAVAVAALCLVGVVVTNARGR-ESWAFTLSAVAIVA 264

Query: 270 XXXLLFGSLFPDLIPSTLNPDWSLTIYNGSSSPYTLKIMTWAALVFAPLVVVYQGWTYWV 329
              L+FGS++PD++P  L+   SL+I   SS+PYTL +MTW A++  P+V+ YQ WTYWV
Sbjct: 265 AVVLIFGSMYPDVMPG-LDGGPSLSIAAASSTPYTLTVMTWVAVILTPVVIAYQSWTYWV 323

Query: 330 FSKRISADRIPAPIGLS 346
           F +R++   +PAP GLS
Sbjct: 324 FRRRLTTSDLPAPAGLS 340


>tr|D5UGS9|D5UGS9_9CELL Tax_Id=446466 SubName: Full=Cytochrome d
           ubiquinol oxidase, subunit II;[Cellulomonas flavigena
           DSM 20109]
          Length = 349

 Score =  297 bits (760), Expect = 2e-78
 Identities = 154/318 (48%), Positives = 203/318 (63%), Gaps = 7/318 (2%)

Query: 30  MLMSFFGRAAEKRGQDPEPYRRAALNTIGPVWDGNEVWLITAGGAMFAAFPEMYASMFSG 89
           ML++   R    R    E  RR  +NTIGPVWDGNEVWL+TAGGA FAAFPE YA++FSG
Sbjct: 30  MLLAILPRGDRARR---EKERRLMINTIGPVWDGNEVWLLTAGGATFAAFPEWYATLFSG 86

Query: 90  LYLALLVILCAMILRIVAIEWRGKIDDPGWRRWADTGIAVGSWVPAILWGVAFASLVRGL 149
            YL L +IL A+I+R+VA EWRGKID P WR WAD  + VGS+VPA+LWGVAFA+LVRG+
Sbjct: 87  FYLPLFLILVALIVRVVAFEWRGKIDSPTWRAWADRALVVGSFVPALLWGVAFANLVRGV 146

Query: 150 PVDADKQIHLSFFGDLLNAYTLLGGLATCALFAFHGAVFVSLKTSGEIRTDAFGFXXXXX 209
            +DAD Q ++  F  LL+ + LLGG+ T ++F  HGAVF+++K  G++R  A  F     
Sbjct: 147 ELDADHQ-YVGGFLALLSPFALLGGVVTLSIFLTHGAVFLAMKVDGDMRERAGAFAARSS 205

Query: 210 XXXXXXXXXFGVWTQVAH-GTGWTWXXXXXXXXXXXXXXXXXFRGSGEGWAFGATSXXXX 268
                    + VW QVA+ G  WTW                  R   EG AF A++    
Sbjct: 206 VVTLVAAGVWAVWAQVAYAGRAWTWAAVAVAAVALVLVVAAT-RVRREGVAFTASAVAIV 264

Query: 269 XXXXLLFGSLFPDLIPSTLNPDWSLTIYNGSSSPYTLKIMTWAALVFAPLVVVYQGWTYW 328
               L+FGS+FPD++P+  +P  SLT+ N SS+ YTL +MTW A +  P+V++YQGWTYW
Sbjct: 265 AAVVLIFGSMFPDVMPA-FDPANSLTVANASSTDYTLTVMTWVAAILTPVVLLYQGWTYW 323

Query: 329 VFSKRISADRIPAPIGLS 346
           VF KR++ + IP   GL+
Sbjct: 324 VFRKRLTIEHIPEATGLT 341


>tr|Q6NFI9|Q6NFI9_CORDI Tax_Id=1717 SubName: Full=Putative
           cytochrome ubiquinol oxidase subunit;[Corynebacterium
           diphtheriae]
          Length = 324

 Score =  296 bits (757), Expect = 4e-78
 Identities = 152/287 (52%), Positives = 186/287 (64%), Gaps = 6/287 (2%)

Query: 50  RRAALNTIGPVWDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIE 109
           R AA+  IGPVWDGNEVWLITAGGA+FAAFPE YA+MFSG YL L +IL  +ILR VA+E
Sbjct: 40  RTAAIKAIGPVWDGNEVWLITAGGALFAAFPEWYATMFSGFYLPLFLILIGLILRGVALE 99

Query: 110 WRGKIDDPGWRRWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFG--DLLN 167
           WRGK+D   WR   D GI +GSWVPA+LWGVAFA++V G+ +D+   I  S  G   LLN
Sbjct: 100 WRGKVDTDVWRDRCDIGIGIGSWVPALLWGVAFANVVHGVAIDSSFHIDSSLTGLIALLN 159

Query: 168 AYTLLGGLATCALFAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAH 227
            + LLGG+A   +F  HGA+F+ LKT   +     G               F VWTQ+AH
Sbjct: 160 PFGLLGGVAFVLVFLLHGALFLKLKTEITVMGSLAG---RLFIPAAVVGAVFLVWTQLAH 216

Query: 228 GTGWTWXXXXXXXXXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTL 287
           G GWTW                  RG+ +GWAF ATS        +LFGSLFP+L+P+TL
Sbjct: 217 GRGWTW-APLVIAVVGLVVAALGIRGNRDGWAFAATSVVILCVAAVLFGSLFPNLMPTTL 275

Query: 288 NPDWSLTIYNGSSSPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRI 334
               SLTIYN SSS YTL +MTWAA++  PLV++YQGWTYWVF +R+
Sbjct: 276 ADGTSLTIYNASSSQYTLTMMTWAAVLVTPLVLLYQGWTYWVFRQRV 322


>tr|Q47S92|Q47S92_THEFY Tax_Id=269800 SubName: Full=Cytochrome bd
           ubiquinol oxidase, subunit II;[Thermobifida fusca]
          Length = 342

 Score =  294 bits (753), Expect = 1e-77
 Identities = 147/290 (50%), Positives = 190/290 (65%), Gaps = 2/290 (0%)

Query: 50  RRAALNTIGPVWDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIVAIE 109
           RR  +N IGPVWDGNEVW++TAGGAMFAAFP  YAS+FSG YL L ++L A+I+R VA E
Sbjct: 42  RRVMINAIGPVWDGNEVWVLTAGGAMFAAFPAWYASLFSGFYLPLFLVLLALIVRGVAFE 101

Query: 110 WRGKIDDPGWRRWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLLNAY 169
           +RGK+D   WR   D  I  GS +PA+LWGVAFA++VRG+P+DAD  +  +   DLLN Y
Sbjct: 102 YRGKVDSVQWRARWDQAIFWGSAIPALLWGVAFANIVRGVPMDADHIVTANLL-DLLNPY 160

Query: 170 TLLGGLATCALFAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVAHGT 229
            LLGGL T +LF  HGA+F+SLKT GE+R  A                 F +WTQV++GT
Sbjct: 161 ALLGGLTTLSLFTLHGAMFLSLKTGGEVRLQARRAVPMIALVAVPAAAGFLLWTQVSYGT 220

Query: 230 GWTWXXXXXXXXXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPSTLNP 289
            WT                   RG  EGW+F AT+        +LFGSLFP+++PST NP
Sbjct: 221 TWTLPLVAIAALTLVAAVALALRGR-EGWSFTATATTIAVATVVLFGSLFPNVLPSTTNP 279

Query: 290 DWSLTIYNGSSSPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRI 339
            +SLT+ N +S+ YTL +MTW A++F P+V+ YQ W+YWVF KRI+ + I
Sbjct: 280 AYSLTVENAASADYTLSVMTWVAVIFLPVVLGYQSWSYWVFRKRITREHI 329


>tr|D5UXC8|D5UXC8_TSUPA Tax_Id=521096 SubName: Full=Cytochrome d
           ubiquinol oxidase, subunit II;[Tsukamurella
           paurometabola DSM 20162]
          Length = 345

 Score =  294 bits (752), Expect = 1e-77
 Identities = 154/319 (48%), Positives = 198/319 (62%), Gaps = 4/319 (1%)

Query: 30  MLMSFFGRAAEKRGQDPEPYRRAALNTIGPVWDGNEVWLITAGGAMFAAFPEMYASMFSG 89
           MLM   G    +   D +  RR  LNTIGPVWDGNEVWLITAG AMFAAFP  YA++FSG
Sbjct: 30  MLMPIMGNR-RRHPTDYDTRRRVLLNTIGPVWDGNEVWLITAGAAMFAAFPVWYATVFSG 88

Query: 90  LYLALLVILCAMILRIVAIEWRGKIDDPGWRRWADTGIAVGSWVPAILWGVAFASLVRGL 149
            YL LL IL  +I+R+ AIEWRGKI+DP WR WAD GI +GSW+PA  WG+ FA+++ G+
Sbjct: 89  FYLVLLAILVGLIVRVCAIEWRGKINDPRWRGWADFGIGLGSWIPAFAWGLVFANILAGV 148

Query: 150 PVDADKQIHLSFFGDLLNAYTLLGGLATCALFAFHGAVFVSLKTSGEIRTDAFGFXXXXX 209
            +  ++    S   DLLN Y LLGG+A   LF  HGA+FV+LK+ G +R DA        
Sbjct: 149 EL-TERGRMTSEVWDLLNPYGLLGGIALLGLFLLHGAIFVALKSDGAVRVDARRLASRMW 207

Query: 210 XXXXXXXXXFGVWTQVAHGTGWTWXXXXXXXXXXXXXXXXXFRGSGEGWAFGATSXXXXX 269
                    F VWTQ+AHG  WTW                  RG  E  AF +TS     
Sbjct: 208 LPVTVIGAAFAVWTQLAHGKAWTWGAVVVAATGLIAAGLLIRRGR-ELAAFLSTSATVAA 266

Query: 270 XXXLLFGSLFPDLIPSTLNPDWSLTIYNGSSSPYTLKIMTWAALVFAPLVVVYQGWTYWV 329
              L+FGSL P+++ +T +P  S++I + +SS YTL +M+W  +V  P+V++YQ W+YWV
Sbjct: 267 VSVLMFGSLAPNVLNAT-DPARSISIADAASSHYTLVVMSWCTIVLLPMVMIYQAWSYWV 325

Query: 330 FSKRISADRIPAPIGLSRR 348
           F KRISA++IP  IGLS R
Sbjct: 326 FRKRISAEQIPPSIGLSPR 344


>tr|C7QYR4|C7QYR4_JONDD Tax_Id=471856 SubName: Full=Cytochrome d
           ubiquinol oxidase, subunit II; EC=3.1.3.1;[Jonesia
           denitrificans]
          Length = 355

 Score =  293 bits (750), Expect = 2e-77
 Identities = 153/299 (51%), Positives = 191/299 (63%), Gaps = 3/299 (1%)

Query: 47  EPYRRAALNTIGPVWDGNEVWLITAGGAMFAAFPEMYASMFSGLYLALLVILCAMILRIV 106
           E  RRA +NTIGPVWDGNEVWL+TAGGA FAAFPE YASMFSG YL LL IL A+I R +
Sbjct: 39  ERERRAVINTIGPVWDGNEVWLLTAGGATFAAFPEWYASMFSGFYLPLLFILFALIFRGM 98

Query: 107 AIEWRGKIDDPGWRRWADTGIAVGSWVPAILWGVAFASLVRGLPVDADKQIHLSFFGDLL 166
           A E+R KI+ P W+ W D GI  GSW PAILWGVAFA+LVRG+ ++ +     SFF  LL
Sbjct: 99  AFEYRSKIETPRWKAWCDFGIIFGSWTPAILWGVAFANLVRGVELNDNYDFVGSFF-SLL 157

Query: 167 NAYTLLGGLATCALFAFHGAVFVSLKTSGEIRTDAFGFXXXXXXXXXXXXXXFGVWTQVA 226
           + Y LLGG  T  LF  HGA+F++LKT G++R DA                 + VWTQ+ 
Sbjct: 158 SPYALLGGAVTLLLFLAHGALFLALKTDGKMRVDANRLASRFLAGAILAGGVWVVWTQLG 217

Query: 227 HGTGWTWXXXXXXXXXXXXXXXXXFRGSGEGWAFGATSXXXXXXXXLLFGSLFPDLIPST 286
           +G GWTW                   G  EG AF A++        L+FGSL+P+++P  
Sbjct: 218 YGAGWTWIATGGAAAGLVLAWLFNKVGH-EGRAFAASAAAILAAVVLIFGSLYPNVMPD- 275

Query: 287 LNPDWSLTIYNGSSSPYTLKIMTWAALVFAPLVVVYQGWTYWVFSKRISADRIPAPIGL 345
           +N   +LTI N SS+ YTL IMTW A++  P+V++YQGWT+WVF KRI  + IP PIGL
Sbjct: 276 INGINNLTIENASSTDYTLTIMTWVAVLLTPIVLLYQGWTFWVFRKRIKVEHIPDPIGL 334


  Database: Amellifera_nr
    Posted date:  Jul 23, 2010  5:10 AM
  Number of letters in database: 4,236,830,644
  Number of sequences in database:  12,507,864
  
Lambda     K      H
   0.326    0.140    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 12507864
Number of Hits to DB: 2,548,125,143
Number of extensions: 98321259
Number of successful extensions: 277993
Number of sequences better than 10.0: 1993
Number of HSP's gapped: 277327
Number of HSP's successfully gapped: 3177
Length of query: 350
Length of database: 4,236,830,644
Length adjustment: 139
Effective length of query: 211
Effective length of database: 2,498,237,548
Effective search space: 527128122628
Effective search space used: 527128122628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 81 (35.8 bits)