BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSMEG_4129
         (196 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           12,507,864 sequences; 4,236,830,644 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|A0QZS3|A0QZS3_MYCS2 Tax_Id=246196 SubName: Full=Putative unch...   352   2e-95
tr|C7MX64|C7MX64_SACVD Tax_Id=471857 SubName: Full=Uncharacteriz...   115   3e-24
tr|D3Q8I2|D3Q8I2_STANL Tax_Id=446470 SubName: Full=Transcription...   102   2e-20
tr|B4V5X8|B4V5X8_9ACTO Tax_Id=465541 SubName: Full=Transcription...    91   7e-17
tr|B8HC78|B8HC78_ARTCA Tax_Id=452863 SubName: Full=Transcription...    78   5e-13
tr|Q67KA4|Q67KA4_SYMTH Tax_Id=2734 SubName: Full=TetR family tra...    74   9e-12
tr|D1A3T2|D1A3T2_THECD Tax_Id=471852 SubName: Full=Transcription...    72   5e-11
tr|D3C8W0|D3C8W0_9ACTO Tax_Id=648999 SubName: Full=Transcription...    71   6e-11
tr|Q73EI0|Q73EI0_BACC1 Tax_Id=222523 SubName: Full=Transcription...    70   1e-10
tr|B8I849|B8I849_CLOCE Tax_Id=394503 SubName: Full=Transcription...    70   1e-10
tr|A0JYR8|A0JYR8_ARTS2 Tax_Id=290399 SubName: Full=Putative tran...    70   1e-10
tr|C4RNL0|C4RNL0_9ACTO Tax_Id=219305 SubName: Full=TetR family t...    70   1e-10
tr|C7NG72|C7NG72_KYTSD Tax_Id=478801 SubName: Full=Transcription...    70   2e-10
tr|C7MYM1|C7MYM1_SACVD Tax_Id=471857 SubName: Full=Uncharacteriz...    70   2e-10
tr|A8FHF2|A8FHF2_BACP2 Tax_Id=315750 (pksA)SubName: Full=Transcr...    70   2e-10
tr|Q2BAY2|Q2BAY2_9BACI Tax_Id=313627 SubName: Full=Transcription...    69   2e-10
tr|D1S5V8|D1S5V8_9ACTO Tax_Id=644283 SubName: Full=Transcription...    69   2e-10
tr|B4AGD8|B4AGD8_BACPU Tax_Id=536229 SubName: Full=HTH-type tran...    69   2e-10
tr|D2ATX6|D2ATX6_STRRD Tax_Id=479432 SubName: Full=Transcription...    69   4e-10
tr|A4FMW2|A4FMW2_SACEN Tax_Id=405948 (pksA/ pks)SubName: Full=Tr...    69   4e-10
tr|C6J5R2|C6J5R2_9BACL Tax_Id=621372 SubName: Full=Transcription...    68   5e-10
tr|D3D3W6|D3D3W6_9ACTO Tax_Id=102897 SubName: Full=Transcription...    68   7e-10
tr|C4RK51|C4RK51_9ACTO Tax_Id=219305 SubName: Full=TetR family t...    67   1e-09
tr|Q0SKD2|Q0SKD2_RHOSR Tax_Id=101510 SubName: Full=Transcription...    67   1e-09
tr|C1AR55|C1AR55_RHOOB Tax_Id=632772 SubName: Full=Putative TetR...    67   1e-09
tr|A7Z2X9|A7Z2X9_BACA2 Tax_Id=326423 (pksA)SubName: Full=PksA;[B...    67   1e-09
tr|A4X6M0|A4X6M0_SALTO Tax_Id=369723 SubName: Full=Transcription...    66   2e-09
tr|C7NGB0|C7NGB0_KYTSD Tax_Id=478801 SubName: Full=Transcription...    65   3e-09
tr|C0ZMS2|C0ZMS2_RHOE4 Tax_Id=234621 SubName: Full=Putative TetR...    65   3e-09
tr|D3CES4|D3CES4_9ACTO Tax_Id=648999 SubName: Full=Regulatory pr...    65   3e-09
tr|D1S3G3|D1S3G3_9ACTO Tax_Id=644283 SubName: Full=Putative tran...    65   3e-09
tr|D2ASL3|D2ASL3_STRRD Tax_Id=479432 SubName: Full=Putative unch...    65   4e-09
tr|D1VKP4|D1VKP4_9ACTO Tax_Id=298654 SubName: Full=Transcription...    65   6e-09
tr|Q5YUQ4|Q5YUQ4_NOCFA Tax_Id=37329 SubName: Full=Putative trans...    64   7e-09
tr|A8M1B2|A8M1B2_SALAI Tax_Id=391037 SubName: Full=Transcription...    64   7e-09
tr|D5PXU6|D5PXU6_COREQ Tax_Id=525370 (pksA)SubName: Full=HTH-typ...    64   7e-09
tr|C3JDY5|C3JDY5_RHOER Tax_Id=596309 SubName: Full=HTH-type tran...    64   7e-09
tr|A4FQ92|A4FQ92_SACEN Tax_Id=405948 SubName: Full=Transcription...    64   1e-08
tr|D2BAD4|D2BAD4_STRRD Tax_Id=479432 SubName: Full=Putative tran...    64   1e-08
tr|A8M2E1|A8M2E1_SALAI Tax_Id=391037 SubName: Full=Putative tran...    64   1e-08
tr|A6WG38|A6WG38_KINRD Tax_Id=266940 SubName: Full=Transcription...    64   1e-08
tr|D3PUM8|D3PUM8_STANL Tax_Id=446470 SubName: Full=Transcription...    63   2e-08
tr|B0RE11|B0RE11_CLAMS Tax_Id=31964 SubName: Full=Putative TetR-...    63   2e-08
tr|C3JFY4|C3JFY4_RHOER Tax_Id=596309 SubName: Full=Transcription...    63   2e-08
tr|Q9KHJ6|Q9KHJ6_9ACTO Tax_Id=115828 (encS)SubName: Full=Putativ...    63   2e-08

>tr|A0QZS3|A0QZS3_MYCS2 Tax_Id=246196 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium smegmatis]
          Length = 196

 Score =  352 bits (902), Expect = 2e-95
 Identities = 186/196 (94%), Positives = 186/196 (94%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV
Sbjct: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
           VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT
Sbjct: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120

Query: 121 TEAFRAATAQMATDLDDVLVTALKGMSVPQPSLEAQRXXXXXXXXXXDAVTAHGPRKPTT 180
           TEAFRAATAQMATDLDDVLVTALKGMSVPQPSLEAQR          DAVTAHGPRKPTT
Sbjct: 121 TEAFRAATAQMATDLDDVLVTALKGMSVPQPSLEAQRLASLLSGLALDAVTAHGPRKPTT 180

Query: 181 IAKILRLHVDSLPTSR 196
           IAKILRLHVDSLPTSR
Sbjct: 181 IAKILRLHVDSLPTSR 196


>tr|C7MX64|C7MX64_SACVD Tax_Id=471857 SubName: Full=Uncharacterized
           conserved protein;[Saccharomonospora viridis]
          Length = 193

 Score =  115 bits (288), Expect = 3e-24
 Identities = 64/184 (34%), Positives = 102/184 (55%), Gaps = 2/184 (1%)

Query: 11  RSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAVVTEAGNRMGQ 70
           R  +++A  RLV + GL+ A+ R+VAAES +NIGSVRHY+  HE L++A   E G RM +
Sbjct: 7   RERVLDAVFRLVAQGGLTEASLRKVAAESGVNIGSVRHYYGTHEQLMIAAAEEVGRRMER 66

Query: 71  RLMKHTPPQ--SRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRTTEAFRAAT 128
           RL    P      D++ +R+ + ++   ++P   +   E V+L+E++AA+R    FR   
Sbjct: 67  RLNAVWPADLGESDVAARRELVESVCRAVLPTGRDDRVELVVLLELVAAARLRPEFRPLA 126

Query: 129 AQMATDLDDVLVTALKGMSVPQPSLEAQRXXXXXXXXXXDAVTAHGPRKPTTIAKILRLH 188
            +M  DL  VLV  L+ + V Q +LEA+R          + +  HG      + ++LR H
Sbjct: 127 TRMGKDLRAVLVATLETVGVKQAALEAERLTALVIGLTTEFIYPHGLPDDDVVTRVLRHH 186

Query: 189 VDSL 192
           +  L
Sbjct: 187 IAEL 190


>tr|D3Q8I2|D3Q8I2_STANL Tax_Id=446470 SubName: Full=Transcriptional
           regulator, TetR family;[Stackebrandtia nassauensis]
          Length = 367

 Score =  102 bits (254), Expect = 2e-20
 Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 7/199 (3%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +DP ERR+ +V+A LR+  ++GL  AT R +A E+ L IGSVRHYF DH  ++   
Sbjct: 1   MPKIVDPTERRTEVVDAVLRIAERDGLEQATLRNIATEAGLAIGSVRHYFTDHAEVMEVA 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
           + E  +R+G R++      +R    +R+ + ++LEE +P DA+R  E+   +  ++ASRT
Sbjct: 61  MKELVDRLGARILAKAERVTRPGVDRREAVQSILEEFLPFDAQRRLESAAWLSFVSASRT 120

Query: 121 TEAFRAATAQMATDLDDVLVTALKGMS----VPQ---PSLEAQRXXXXXXXXXXDAVTAH 173
               R    +M      ++   +K +     VP+     +E+ R           AV   
Sbjct: 121 EPRLRPFAIKMQDGTRTIVGRIVKRIKESGRVPEDFDTDVESDRLTVLIDGLTLRAVLQP 180

Query: 174 GPRKPTTIAKILRLHVDSL 192
                +    +LR H+DSL
Sbjct: 181 DTLDESAARAVLRRHLDSL 199


>tr|B4V5X8|B4V5X8_9ACTO Tax_Id=465541 SubName: Full=Transcriptional
           regulator;[Streptomyces sp. Mg1]
          Length = 207

 Score = 90.9 bits (224), Expect = 7e-17
 Identities = 65/203 (32%), Positives = 96/203 (47%), Gaps = 11/203 (5%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +DP  RR  +V+A  R+V++EGL   + R VA E+QLNIGS+RHYFA  + L+   
Sbjct: 1   MPKHVDPDARRQQVVDALFRVVVREGLHRTSLRGVADEAQLNIGSLRHYFASQQELMRFA 60

Query: 61  VTEAGNRMGQRLMKHTPP----QSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIA 116
           +    +R+G RL+          SR    Q +    LL EL+PLD  R +E  + ++  A
Sbjct: 61  MQSMIDRVGGRLLARVEQIGDLGSRPRPEQLRLAAELLAELLPLDERRRTEVAVFLDFNA 120

Query: 117 ASRTTEAFRAATAQMATDLDDVL---VTALKGMSVPQPSL----EAQRXXXXXXXXXXDA 169
           A+RT  AF     ++A     +L   +  L      +P L    EA+R            
Sbjct: 121 AARTDPAFGDLARKVAEGTRWLLRRILARLDAAGSLRPGLDLDIEAERLAALVDGLGLSG 180

Query: 170 VTAHGPRKPTTIAKILRLHVDSL 192
           V       P     +LR H++ L
Sbjct: 181 VLHPDLLPPEMSLDVLRTHLEGL 203


>tr|B8HC78|B8HC78_ARTCA Tax_Id=452863 SubName: Full=Transcriptional
           regulator, TetR family;[Arthrobacter chlorophenolicus]
          Length = 202

 Score = 78.2 bits (191), Expect = 5e-13
 Identities = 60/200 (30%), Positives = 90/200 (45%), Gaps = 8/200 (4%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +DP  RR  +V+A LR++  +GL  A+ R VA E+ L +GSVRHYFA  + L+   
Sbjct: 1   MPKIVDPDARRRDVVDAVLRIIAVDGLERASLREVADEAGLAVGSVRHYFAGSDELLAFS 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDL---SRQRQHLIALLEELVPLDAERHSEAVILMEVIAA 117
                +R+  RL    P     L   +  RQ ++ LL  ++PLD ER  E   LM   +A
Sbjct: 61  FASVVDRVVARLQSMLPAMDAALPGSAAHRQAVLTLLGGMLPLDEERAVEICALMAFRSA 120

Query: 118 SRTTEAFRA---ATAQMATDLDDVLVTALKGMSVPQPSL--EAQRXXXXXXXXXXDAVTA 172
           +R    F      + +    +   +V  L     PQ +L  EA+R           A+  
Sbjct: 121 ARIKPFFAPEADRSHRQVAVIAGQVVAGLMPADEPQENLVIEAERLLATLDGLGMHALLQ 180

Query: 173 HGPRKPTTIAKILRLHVDSL 192
                    + +L  H+D L
Sbjct: 181 PAWMTADMCSGVLERHLDGL 200


>tr|Q67KA4|Q67KA4_SYMTH Tax_Id=2734 SubName: Full=TetR family
           transcriptional regulator;[Symbiobacterium thermophilum]
          Length = 198

 Score = 73.9 bits (180), Expect = 9e-12
 Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 12/111 (10%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D  E+R  I EA  R++L++G+  AT R++AAE+ +++G++RHYF   + L+V  
Sbjct: 1   MPKIVDHEEQRKRIAEAMWRVILRDGMEGATVRKIAAEAGMSVGALRHYFRQQDDLLVYA 60

Query: 61  VTEAGNRMGQRLMK----HTPPQSRDLSRQRQHLIALLEELVPLDAERHSE 107
           +     R+ QR+++    + PP  +         + LL E+VP+D ER +E
Sbjct: 61  MRLVNERVEQRILRLARTNLPPLEK--------AVRLLLEVVPVDGERRAE 103


>tr|D1A3T2|D1A3T2_THECD Tax_Id=471852 SubName: Full=Transcriptional
           regulator, TetR family;[Thermomonospora curvata]
          Length = 197

 Score = 71.6 bits (174), Expect = 5e-11
 Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D   RR+ I+ A L LV +EG    T RR AA + L+ G++ HYFAD + L+ A 
Sbjct: 1   MPRVVDHEARRAEIISAVLALVAEEGAEGVTVRRAAAAAGLSTGALAHYFADKDELLAAA 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEA 108
             E   R+G+R+        RD +    H I     ++PLDAER +EA
Sbjct: 61  FVEVARRVGRRVA--AVSAERDPADLLHHAIT---AVLPLDAERRAEA 103


>tr|D3C8W0|D3C8W0_9ACTO Tax_Id=648999 SubName: Full=Transcriptional
           regulator, TetR family;[Micromonospora sp. L5]
          Length = 218

 Score = 71.2 bits (173), Expect = 6e-11
 Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 1/127 (0%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP R+D  ERR+ I +A +R+  ++GL A + R VAA ++++ G V+HYF   + ++V  
Sbjct: 1   MPKRVDHRERRALIADALMRVAAEQGLEAVSLRHVAAAAEVSTGMVQHYFRTRDEMMVFA 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
           +     R   R+ K   P        R  L A+L EL+PLD +R ++  + +  +A +  
Sbjct: 61  LAVVRERNEARVRKAVEPLGA-TPAPRALLRAMLAELLPLDEDRRADGRVALAFLAYTAV 119

Query: 121 TEAFRAA 127
             A  AA
Sbjct: 120 RPAVAAA 126


>tr|Q73EI0|Q73EI0_BACC1 Tax_Id=222523 SubName: Full=Transcriptional
           regulator, TetR family;[Bacillus cereus]
          Length = 199

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 22/204 (10%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D  E+R  I EAA  ++ KEG+  A+ RRVAAE+ ++ G++RHYF+  + +++ +
Sbjct: 1   MPKIVDHDEKRKQIAEAAWNIIRKEGVEKASIRRVAAEAGMSSGALRHYFSTQDEMLLFI 60

Query: 61  VT---EAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAA 117
           +    E G +  Q       P         Q +  +L ELVP+D E+  E  +   +   
Sbjct: 61  MNYYLEEGEKRSQNKEWSENPV--------QAVEEVLLELVPIDEEKKIETSVWWILALR 112

Query: 118 SRTTEAFR-------AATAQMATDLDDVLVTALKGM--SVPQPSLEAQRXXXXXXXXXXD 168
           S T++  +         T ++A  + ++L  ALKG+        LE  R           
Sbjct: 113 SLTSDTIKDKKDEMTDGTYELANSMIEIL--ALKGVLSDSMNAELEKSRLTALIEGLSIH 170

Query: 169 AVTAHGPRKPTTIAKILRLHVDSL 192
           A+       P  + +++R H+++L
Sbjct: 171 ALLRPDVYSPEKVKEVIRYHLETL 194


>tr|B8I849|B8I849_CLOCE Tax_Id=394503 SubName: Full=Transcriptional
           regulator, TetR family;[Clostridium cellulolyticum]
          Length = 199

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 22/204 (10%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D  E+R  I EAA  ++ KEG+  A+ RRVAAE+ ++ G++RHYF+  + +++ +
Sbjct: 1   MPKIVDHDEKRKQIAEAAWNIIRKEGVEKASIRRVAAEAGMSSGALRHYFSTQDEMLLFI 60

Query: 61  VT---EAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAA 117
           +    E G +  Q       P         Q +  +L ELVP+D E+  E  +   +   
Sbjct: 61  MNYYLEEGKKRSQNKEWSENPV--------QAVEEVLLELVPIDEEKKIETSVWWILALR 112

Query: 118 SRTTEAFR-------AATAQMATDLDDVLVTALKGM--SVPQPSLEAQRXXXXXXXXXXD 168
           S T++  +         T ++A  + ++L  ALKG+        LE  R           
Sbjct: 113 SLTSDTIKDKKDEMTDGTYELANSMIEIL--ALKGVLSDSMNAELEKSRLTALIEGLSIH 170

Query: 169 AVTAHGPRKPTTIAKILRLHVDSL 192
           A+       P  + +++R H+++L
Sbjct: 171 ALLRPDVYSPEKVKEVIRYHLETL 194


>tr|A0JYR8|A0JYR8_ARTS2 Tax_Id=290399 SubName: Full=Putative
           transcriptional regulator, TetR family;[Arthrobacter
           sp.]
          Length = 206

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 4/132 (3%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D   RR  +VEA  R++  +GL  A+ R VA E+ L +GSVRHYFA  + L+   
Sbjct: 1   MPKIVDAAVRRREVVEAVFRIIAADGLERASLREVADEAGLAVGSVRHYFASSDDLLAHS 60

Query: 61  VTEAGNRMGQRL---MKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAA 117
                +R+  RL    +H   Q        + L+ LL + +PLD ER  +A + M    A
Sbjct: 61  FGVVVDRITGRLDAAREHLSRQDPGTPGHGEGLLTLLGQFLPLDEERAVDACVWMAFKNA 120

Query: 118 SRTTEAFRAATA 129
           +R    F AA A
Sbjct: 121 AR-IRPFLAAEA 131


>tr|C4RNL0|C4RNL0_9ACTO Tax_Id=219305 SubName: Full=TetR family
           transcriptional regulator;[Micromonospora sp. ATCC
           39149]
          Length = 206

 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP ++D  ERR  I +A  ++V   GL   T R VAA +    G V HYF+  + L+   
Sbjct: 8   MPKQVDHEERRETISQAVWQVVSDSGLEGLTLRAVAAAAGCTTGMVTHYFSGKKMLLAHA 67

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
            TE   RM  R+   T P +   +  R  L A+ E+ +PLD+ERH EAV+  + +  +R 
Sbjct: 68  RTEMHRRMAARI--DTLPAA---ASARDTLYAVAEQALPLDSERHLEAVVWSQFLLTTRH 122

Query: 121 TEAFRA 126
             A  A
Sbjct: 123 DPALLA 128


>tr|C7NG72|C7NG72_KYTSD Tax_Id=478801 SubName: Full=Transcriptional
           regulator, tetR family;[Kytococcus sedentarius]
          Length = 206

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 4/125 (3%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP   D  ERR+ + +A   +V +EGL   + R +AAE   + G+VRHYF+    L+   
Sbjct: 1   MPRLADHAERRAALADAVFAVVAREGLRGTSVRTIAAEVGWSPGAVRHYFSAQHDLLAFA 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
           + E  +R+  R+M              +  + LLE+L+PLD  R  E  + +E + A RT
Sbjct: 61  MEEMDHRIAARVMDVITWDGPG----EECALELLEQLLPLDDLRRQEVAVYVEFVVAGRT 116

Query: 121 TEAFR 125
            E  R
Sbjct: 117 DERLR 121


>tr|C7MYM1|C7MYM1_SACVD Tax_Id=471857 SubName: Full=Uncharacterized
           conserved protein;[Saccharomonospora viridis]
          Length = 203

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 18/203 (8%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D  ERRS + EA  RL+ + G  A T R VAAE+  ++G+V+HY    + +++A 
Sbjct: 1   MPKIVDHEERRSRVAEAVCRLIARGGFEAVTLRAVAAEANSSLGAVQHYLKTRDDMLMAA 60

Query: 61  VTEAGNRMGQRLMKHTPPQS-RDLSRQRQHLIALLEELVPLDAERHSEAVILM----EVI 115
           +    + +  R     P Q  RD  R       LL + +PLD  R  E  + +    + +
Sbjct: 61  LQHISHSVTTRAENVNPEQDWRDAFRD------LLAQFLPLDQTRRIEGRVWLAFTAQAV 114

Query: 116 AASRTTEAFRAATAQMATDLDDVLVTALKGMSVPQPSLEAQRXXXXXXXXXXDAVTAHG- 174
              R  EA R A     T+L  +L  A +   +  P L+             D +T  G 
Sbjct: 115 VNPRLGEALREANTTSHTNLTRLLARA-RDAGLIHPDLD-PADTATDLLALVDGLTMQGL 172

Query: 175 --PRK--PTTIAKILRLHVDSLP 193
             P +  P  +  +L  H+  LP
Sbjct: 173 TDPDRFPPAHLIAVLERHIARLP 195


>tr|A8FHF2|A8FHF2_BACP2 Tax_Id=315750 (pksA)SubName:
           Full=Transcriptional regulator;[Bacillus pumilus]
          Length = 202

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 49/201 (24%), Positives = 97/201 (48%), Gaps = 16/201 (7%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D  +++  + +AA+R++ ++GL  A+ R+VA E+ ++ GS+RHYF+  + L +  
Sbjct: 1   MPKIVDHHKQKQKVAQAAMRVIKQDGLENASVRKVAVEAGISAGSMRHYFSTQQELFLFS 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
           +T    R+ +R+       S +     ++++ALLE+++PLD ER  E  +       S T
Sbjct: 61  MTLIQERVKERMTGLQLNGSTE-----ENVLALLEQVLPLDEERRFEMEVWQAFTVKSMT 115

Query: 121 TEAFRAATAQMATDLDDVLVTALKGMSVPQPSL---------EAQRXXXXXXXXXXDAVT 171
               +   A+M  +L  +    L  M++ +  L         E +R          + + 
Sbjct: 116 EPDLQPLNAKMYDELFQMTQYCL--MTLKEDGLLLDHIDLFVETERLYAVINGLALNGIL 173

Query: 172 AHGPRKPTTIAKILRLHVDSL 192
                 P  I  +L++H+ S+
Sbjct: 174 QPHRLPPQLIRSVLQMHLQSI 194


>tr|Q2BAY2|Q2BAY2_9BACI Tax_Id=313627 SubName: Full=Transcriptional
           regulator;[Bacillus sp. NRRL B-14911]
          Length = 193

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 12/129 (9%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVV-- 58
           MP  +D  +R+  IV+A  +++L +G+  A+ R +AAE+ +++G++RHYF+  + L+V  
Sbjct: 1   MPKIVDHEQRKKRIVQATWQVILDKGVEGASVRNIAAEAGVSLGALRHYFSTQDELLVYA 60

Query: 59  --AVVTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIA 116
              V     NR+ +  +K  PP        R+ +  +L E+VP   E+ +E  +    +A
Sbjct: 61  MKLVNENVINRVSEIALKDLPP--------REKVYQVLLEIVPTTDEKMAEMEVWFAFVA 112

Query: 117 ASRTTEAFR 125
            SR  E FR
Sbjct: 113 YSRQKEEFR 121


>tr|D1S5V8|D1S5V8_9ACTO Tax_Id=644283 SubName: Full=Transcriptional
           regulator, TetR family;[Micromonospora aurantiaca ATCC
           27029]
          Length = 218

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 1/127 (0%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP R+D  ERR+ I +A +R+  ++GL A + R VAA ++++ G V+HYF   + ++V  
Sbjct: 1   MPKRVDHRERRALIADALMRVAAEQGLEAVSLRHVAAAAEVSPGMVQHYFRTRDEMMVFA 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
           +     R   R+ +   P        R  L A+L EL+PLD +R ++  + +  +A +  
Sbjct: 61  LAVVRERNEARVRRAVEPLGA-TPAPRALLRAMLAELLPLDEDRQADGRVALAFLAYTAV 119

Query: 121 TEAFRAA 127
             A  AA
Sbjct: 120 RPAVAAA 126


>tr|B4AGD8|B4AGD8_BACPU Tax_Id=536229 SubName: Full=HTH-type
           transcriptional regulator PksA;[Bacillus pumilus ATCC
           7061]
          Length = 202

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 49/201 (24%), Positives = 95/201 (47%), Gaps = 16/201 (7%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D  +++  + +AA+R++ ++GL  A+ R+VA E+ ++ GS+RHYF+  + L +  
Sbjct: 1   MPKIVDHYKQKQKVAQAAMRVIKQDGLENASVRKVAVEAGISAGSMRHYFSTQQELFLFS 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
           +T    R+ +R+       S +     +++ ALLE+++PLD ER  E  +       S T
Sbjct: 61  MTLIQERVKERMTGLQLNGSTE-----ENVFALLEQVLPLDEERRFEMEVWQAFTVKSMT 115

Query: 121 TEAFRAATAQMATDLDDVLVTALKGMSVPQPSL---------EAQRXXXXXXXXXXDAVT 171
               +   A+M  +L  +    L  M + +  L         E +R          + + 
Sbjct: 116 EPDLQPLNAKMYDELFQMTQYCL--MKLKEDGLLLDHIDLLVETERLYAVINGLALNGIL 173

Query: 172 AHGPRKPTTIAKILRLHVDSL 192
                 P  I  +L++H+ S+
Sbjct: 174 QPHRLPPQLIRSVLQMHLQSI 194


>tr|D2ATX6|D2ATX6_STRRD Tax_Id=479432 SubName: Full=Transcriptional
           regulator;[Streptosporangium roseum]
          Length = 199

 Score = 68.6 bits (166), Expect = 4e-10
 Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 12/148 (8%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D  ERR  +VEAA R++L+EG+ AAT R +A E+  + G + HYFAD + ++++ 
Sbjct: 1   MPKIVDHGERREEVVEAARRIILREGIEAATTRAIAKEAGYSNGVLTHYFADKDDIMLSA 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEEL---VPLDAERHSEAVILMEVIAA 117
           +  +  R+ +RL        R     R  L AL E L   +PLD ER  E+ + +   + 
Sbjct: 61  LRSSHRRIVERL--------RGKLAGRGGLAALRELLLDNLPLDDERTRESGLEIGFWSR 112

Query: 118 SRTTEAFRAATAQMATDLDDVLVTALKG 145
           S T+ A   A    A +L   LV +L G
Sbjct: 113 SLTSPAMLEAQRAEAGEL-RYLVRSLLG 139


>tr|A4FMW2|A4FMW2_SACEN Tax_Id=405948 (pksA/ pks)SubName:
           Full=Transcriptional regulator;[Saccharopolyspora
           erythraea]
          Length = 269

 Score = 68.6 bits (166), Expect = 4e-10
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 4/118 (3%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D  +RR+ +     +++ ++G+  AT R+VA E+ +++G +RHYF     L+   
Sbjct: 1   MPKLVDHDQRRAELTRVVWQVIARDGIEGATVRKVAEEAGVSVGGLRHYFDSQRGLLRFA 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAAS 118
             E G  +  R+  H   +     R ++    +LEEL+PLDA+R  EA + +  +  S
Sbjct: 61  AQEMGKHVAARVADHLRAELPGQERAQR----VLEELLPLDADRRREADVWLAFLVRS 114


>tr|C6J5R2|C6J5R2_9BACL Tax_Id=621372 SubName: Full=Transcriptional
           regulator;[Paenibacillus sp. oral taxon 786 str. D14]
          Length = 199

 Score = 68.2 bits (165), Expect = 5e-10
 Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 10/197 (5%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D  +R+  I EA  R++LK+G+  AT R +A E+ L+ G++RH F   E L+   
Sbjct: 1   MPKLVDHEQRKQIIAEATWRVILKQGMEGATVRNIAKEAGLSPGALRHDFNSQEELLRYA 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
           +     R  +R+++ +      L +    ++ +L+E+VP   E  +EA + M   A  R 
Sbjct: 61  MNLVKERATERIIEISALDLPPLEK----VLRILQEVVPTREETRAEAEVWMAFTAYFRH 116

Query: 121 TEAFRAATAQMATDLDDVLVTALKGMSVPQPSLEAQRXXXXXXXXXXDAVTAHG---PRK 177
                 A      DL   L+T +    + Q  L+ +           D +T H    P +
Sbjct: 117 KPGKFDARHDGLYDLMQRLITTMDQHGLLQAGLD-REMETVRLHALIDGITLHALLDPLR 175

Query: 178 --PTTIAKILRLHVDSL 192
             P  I ++L+ H+DS+
Sbjct: 176 VNPDKINRVLKAHLDSI 192


>tr|D3D3W6|D3D3W6_9ACTO Tax_Id=102897 SubName: Full=Transcriptional
           regulator, TetR family;[Frankia sp. EUN1f]
          Length = 207

 Score = 67.8 bits (164), Expect = 7e-10
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  ID  +RR+ I  A LRLV +EG+ A T RRVAAES  + G + HYF   +  ++AV
Sbjct: 1   MPRAIDHEQRRAEIGAAVLRLVAREGIDAVTVRRVAAESGWSTGVLAHYFGSKDE-ILAV 59

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
             +A +   +R   +        +R R  L A L  L+PLD  R  E ++    ++    
Sbjct: 60  AFQASSDAYRRRFANIAAD----ARPRTVLRAALTGLLPLDEARRDELLVWYGFVSRVLA 115

Query: 121 TEAFRAATAQMATDLDDVLVTAL 143
           +E  RA       +L  +L   +
Sbjct: 116 SEMLRAFPRDAYRELRTILAEVI 138


>tr|C4RK51|C4RK51_9ACTO Tax_Id=219305 SubName: Full=TetR family
           transcriptional regulator;[Micromonospora sp. ATCC
           39149]
          Length = 191

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP ++DP ERR  I +A +R+  K+GL A + R VAAE+ ++ G V+HYF   + +++  
Sbjct: 1   MPKKVDPQERRRLIADALMRVAAKQGLDAISLRHVAAEAGVSPGMVQHYFRTKDEMMMFA 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAAS-- 118
           +   G R  Q  +     +  D    R  L  ++  L+PLD +   +  + +  +A +  
Sbjct: 61  LAVVGER-SQTRVTEAVARLGDNPSPRALLRTMIAALLPLDEQTRDDGRVALGFLAYTAV 119

Query: 119 --RTTEAFRAATAQM 131
                 A R  TAQM
Sbjct: 120 RPAAASALREETAQM 134


>tr|Q0SKD2|Q0SKD2_RHOSR Tax_Id=101510 SubName: Full=Transcriptional
           regulator, TetR family protein;[Rhodococcus sp.]
          Length = 194

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 5/118 (4%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  ID   R+  I EA  R++ +EG+ A + R VAAE+ ++ GS+RH FA    L+   
Sbjct: 1   MPKLIDHDRRQQEIAEAVWRVIQREGIGAVSVRDVAAEAGISSGSLRHVFASKTELLAYS 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAAS 118
           +     R+ +R   H       ++   Q  +A+L+E++PLD  R  E  + + ++A S
Sbjct: 61  MRLVATRVRERAQAHA-----SITDPWQRALAVLDEVLPLDDRRRCEMEVNLALVAES 113


>tr|C1AR55|C1AR55_RHOOB Tax_Id=632772 SubName: Full=Putative TetR
           family transcriptional regulator;[Rhodococcus opacus]
          Length = 194

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 5/118 (4%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  ID   R+  I EA  R++ +EG+ A + R VAAE+ ++ GS+RH FA    L+   
Sbjct: 1   MPKLIDHDRRQQEIAEAVWRVIQREGIGAVSVRDVAAEAGISSGSLRHVFASKAELLAYS 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAAS 118
           +     R+ +R   H       ++   Q  +A+L+E++PLD  R  E  + + ++A S
Sbjct: 61  MRLVATRVRERAQAHA-----SITDPWQRALAVLDEVLPLDDRRRCEMEVNLALVAES 113


>tr|A7Z2X9|A7Z2X9_BACA2 Tax_Id=326423 (pksA)SubName:
           Full=PksA;[Bacillus amyloliquefaciens]
          Length = 194

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 12/123 (9%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  ID  +RR  I EA  R +L+ G+  AT R +A E+ L++G++RHYF   + L+   
Sbjct: 1   MPKIIDHEKRRKQIAEATWRTILERGMEGATVRNIAQEAGLSLGALRHYFTTQDELLGYA 60

Query: 61  VT----EAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIA 116
           +T    +A  R+ +  MK  PP        ++  + L+ E++P D E  +E  +     A
Sbjct: 61  MTLVKEKAAARINEVAMKDLPP--------KEKAVRLMLEIIPTDEETMAEMEVWFAFTA 112

Query: 117 ASR 119
            +R
Sbjct: 113 YAR 115


>tr|A4X6M0|A4X6M0_SALTO Tax_Id=369723 SubName: Full=Transcriptional
           regulator, TetR family;[Salinispora tropica]
          Length = 206

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 3/137 (2%)

Query: 10  RRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAVVTEAGNRMG 69
           RR+ I +A L +V + GL+A +   VAA++ ++ G V+HYF     L+ A   E GN + 
Sbjct: 16  RRNEIADAVLAVVAERGLAAVSLAAVAAQAGVSPGRVQHYFPTKRGLIEAAF-ERGNALS 74

Query: 70  Q-RLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRTTEAFRAAT 128
             R+     P  RD+SR+R  L  +L EL+P DA   +   +     AA+   EA  A  
Sbjct: 75  SGRITAKASPDDRDVSRRRL-LTVVLTELIPYDATTRAHLRVRQSFTAAALADEAIAARL 133

Query: 129 AQMATDLDDVLVTALKG 145
                +L   L   L+G
Sbjct: 134 RVDYANLHGQLANLLRG 150


>tr|C7NGB0|C7NGB0_KYTSD Tax_Id=478801 SubName: Full=Transcriptional
           regulator;[Kytococcus sedentarius]
          Length = 207

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 35/116 (30%), Positives = 61/116 (52%)

Query: 7   PVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAVVTEAGN 66
           P   +  + EAA+R++ ++G    + R VAAES L+ G+V+++    + L+VA +T +  
Sbjct: 13  PPPTQVRLAEAAIRVIAQQGFDVVSVRTVAAESGLSAGTVQYHHPTRQDLLVAALTRSAE 72

Query: 67  RMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRTTE 122
           R   R+              R+ L+  L EL+PL+ ERH +A   +   AA+ T +
Sbjct: 73  RQAARVETAVRADPATSESFRRALLVALRELLPLEGERHEDAAAWVSFGAAASTRQ 128


>tr|C0ZMS2|C0ZMS2_RHOE4 Tax_Id=234621 SubName: Full=Putative TetR
           family transcriptional regulator;[Rhodococcus
           erythropolis]
          Length = 196

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 14/200 (7%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           M  R  P ERR  I EA  R++ ++G+++A+ R VA E++++ GS+RH+FA    L++  
Sbjct: 1   MVKRSSPDERREEIAEAVWRVIRRDGVASASVRAVADEAKMSTGSLRHFFATQSELLLFA 60

Query: 61  VTEAGNRMGQRLMK-HTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASR 119
           +T    R+ +R+      P  R   RQ        ++ VPLD +R  E  +     AA++
Sbjct: 61  MTLVTVRVEKRIAGIDFDPDIRRAIRQ------FTDQFVPLDEDRREEMQVWEAFAAAAQ 114

Query: 120 TTEAFRAATAQMATDLDD---VLVTALKGMSVPQP----SLEAQRXXXXXXXXXXDAVTA 172
           T     A   +    L +     V A+      QP     +EA R            V  
Sbjct: 115 TDSTLTAVRDETDRTLFEHYRTFVEAVHDAGFLQPDASVDIEAMRLHALADGLASHGVDN 174

Query: 173 HGPRKPTTIAKILRLHVDSL 192
                P  I ++L  H  +L
Sbjct: 175 PERTNPQVIGRVLDAHFATL 194


>tr|D3CES4|D3CES4_9ACTO Tax_Id=648999 SubName: Full=Regulatory
           protein;[Micromonospora sp. L5]
          Length = 192

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 5/126 (3%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D   RR+ +  A  R+V ++G+ AAT R +AAE+  +  ++RHYFA    L+V  
Sbjct: 1   MPKIVDHDARRAELARAMWRVVYRDGVGAATVRSIAAEAGWSPSALRHYFATQTELLVFA 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
           +        +R+       S     QR     +LE+L+PLD +R  EA + + + A +RT
Sbjct: 61  MEHVQAEAAERITTGDRTGSPREVAQR-----ILEQLLPLDRQRLREAEVWLLLAARTRT 115

Query: 121 TEAFRA 126
             A RA
Sbjct: 116 DPAARA 121


>tr|D1S3G3|D1S3G3_9ACTO Tax_Id=644283 SubName: Full=Putative
           transcriptional regulator, TetR family;[Micromonospora
           aurantiaca ATCC 27029]
          Length = 192

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 5/126 (3%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D   RR+ +  A  R+V ++G+ AAT R +AAE+  +  ++RHYFA    L+V  
Sbjct: 1   MPKIVDHDARRAELARAMWRVVYRDGVGAATVRSIAAEAGWSPSALRHYFATQTELLVFA 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
           +        +R+       S     QR     +LE+L+PLD +R  EA + + + A +RT
Sbjct: 61  MEHVQAEAAERITTGDRTGSPREVAQR-----ILEQLLPLDRQRVREAEVWLLLAARTRT 115

Query: 121 TEAFRA 126
             A RA
Sbjct: 116 DPAARA 121


>tr|D2ASL3|D2ASL3_STRRD Tax_Id=479432 SubName: Full=Putative
           uncharacterized protein;[Streptosporangium roseum]
          Length = 207

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 2/143 (1%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP ++D  ERR  + EA LR+    GL A + R +AAE+ +++  V++YF D ++L+ + 
Sbjct: 1   MPKQVDHDERRRQLTEALLRIAGTRGLQAVSMREIAAEAGVSLRVVQYYFTDKQALLDSG 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
           + E   R+ +R+ +      R     R    A+L  ++P D +   +++       A+ T
Sbjct: 61  LAELAARLDRRVRQRAAATGR--LSTRSVFEAVLGAILPSDEQSRLDSLAWTAYYTAALT 118

Query: 121 TEAFRAATAQMATDLDDVLVTAL 143
             A  AA       L+D L T L
Sbjct: 119 DPALAAAALTRPDALEDFLTTRL 141


>tr|D1VKP4|D1VKP4_9ACTO Tax_Id=298654 SubName: Full=Transcriptional
           regulator, TetR family;[Frankia sp. EuI1c]
          Length = 201

 Score = 64.7 bits (156), Expect = 6e-09
 Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 11/113 (9%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D   RR  I EA +RLV   GL+AA+ R VAAE+ +++G+V+  F   E+++   
Sbjct: 1   MPRAVDQEARRRDIAEAVMRLVGSRGLAAASIRAVAAEAGVSVGAVQRCFHSREAMMTFT 60

Query: 61  VTEAGNRMGQRLMKH-----TPPQSRDLSRQRQHLIALLEELVPLDAERHSEA 108
           + +   R+ +R          P   RDL R      A+L ELVPLD E   EA
Sbjct: 61  LGQVNVRLTERFQARVARLPAPATPRDLLR------AVLIELVPLDDETRVEA 107


>tr|Q5YUQ4|Q5YUQ4_NOCFA Tax_Id=37329 SubName: Full=Putative
           transcriptional regulator;[Nocardia farcinica]
          Length = 200

 Score = 64.3 bits (155), Expect = 7e-09
 Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  ID  +RR+ I  A  RL+ + G+SA + R VAAE+ L +GS+RH F     L+   
Sbjct: 1   MPKTIDREQRRAEIAAAVWRLIDQSGVSAVSLRTVAAEAGLVLGSLRHTFPTKADLLAYA 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIA 116
           +     R  QR+  H       +   R+  +A+L EL+PLD +R  E  + + ++A
Sbjct: 61  MELVFVRAEQRVSAHAA-----IGDPRRRALAMLLELLPLDEQRRIEMRVDLALVA 111


>tr|A8M1B2|A8M1B2_SALAI Tax_Id=391037 SubName: Full=Transcriptional
           regulator, TetR family;[Salinispora arenicola]
          Length = 198

 Score = 64.3 bits (155), Expect = 7e-09
 Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 3/136 (2%)

Query: 10  RRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAVVTEAGNRMG 69
           RR+ I +A L +V + GL+A +   VAA++ ++ G V+HYF     L+ A   E GN + 
Sbjct: 8   RRNEIADAVLAIVAERGLAAVSLAAVAAQAGVSPGRVQHYFPAKRELIEAAF-ERGNALS 66

Query: 70  Q-RLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRTTEAFRAAT 128
             R+     P  RD+SR+R  L  +L EL+P DA   +   +     AA+   EA  A  
Sbjct: 67  SGRIAAKAGPDDRDVSRRRL-LTVVLTELIPYDAVTRAHLRVRQSFTAAALADEAIAARL 125

Query: 129 AQMATDLDDVLVTALK 144
                 L D L   L+
Sbjct: 126 RVDYAHLHDRLADLLR 141


>tr|D5PXU6|D5PXU6_COREQ Tax_Id=525370 (pksA)SubName: Full=HTH-type
           transcriptional regulator PksA;[Rhodococcus equi ATCC
           33707]
          Length = 201

 Score = 64.3 bits (155), Expect = 7e-09
 Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 13/183 (7%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           M  R     RR  I +A L+++ ++G+ AA+ R +A E+ L+ GS+RH+F     L++  
Sbjct: 1   MVKRTSTEARREEIADAVLQVIRRDGIGAASVRTIADEAGLSTGSLRHFFGTQSELLLFA 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
           +     R+ +R+       + DL   R     L E+ VPLDA+R  E  +    + A+RT
Sbjct: 61  MELVTRRVHERIA--AIEFTGDL---RADARLLAEQFVPLDADRRGEMDVWQAFVVAART 115

Query: 121 TEAFRAATAQMATDLDD---VLVTAL--KGMSVPQPSLEAQRXXXXXXXXXXDAVTAHGP 175
             +  A   +   ++ +    LV AL   G+  P  S+E +           D + AHG 
Sbjct: 116 DPSLAAVRDRTDREMYEGFLRLVGALHDAGLLAPDTSVEVE---AARLHALVDGLAAHGV 172

Query: 176 RKP 178
             P
Sbjct: 173 NHP 175


>tr|C3JDY5|C3JDY5_RHOER Tax_Id=596309 SubName: Full=HTH-type
           transcriptional regulator PksA;[Rhodococcus erythropolis
           SK121]
          Length = 195

 Score = 64.3 bits (155), Expect = 7e-09
 Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 7/124 (5%)

Query: 4   RIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAVVTE 63
           R  P ERR  I EA  R++ ++G+++A+ R VA E++++ GS+RH+FA    L++  +T 
Sbjct: 3   RSSPDERREEIAEAVWRVIRRDGVASASVRAVADEAKMSTGSLRHFFATQSELLLFAMTL 62

Query: 64  AGNRMGQRLMK-HTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRTTE 122
              R+ +R+      P  R   RQ        ++ VPLD +R  E  +     AA++T  
Sbjct: 63  VTVRVEERIAGIDFDPDIRRAIRQ------FTDQFVPLDQDRREEMQVWEAFAAAAQTDS 116

Query: 123 AFRA 126
           A  A
Sbjct: 117 ALTA 120


>tr|A4FQ92|A4FQ92_SACEN Tax_Id=405948 SubName: Full=Transcriptional
           regulator, TetR family;[Saccharopolyspora erythraea]
          Length = 199

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 11/115 (9%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP R+D   RR  I +A +R+  +EGL   + R VAAE+ +++G+V+HYF   E +++  
Sbjct: 1   MPKRVDHAARREQIADALIRIASREGLEGVSLRDVAAEAGVSMGAVQHYFKTKEQMLLFA 60

Query: 61  VTEAGNRMGQRLMKH-----TPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVI 110
              A +++ +R+ +H       P  R++ R       ++ E++P+  E  S  ++
Sbjct: 61  TAHANDKVTERIREHLARADVAPTPREVVR------TVMIEMLPVSPEGRSALLV 109


>tr|D2BAD4|D2BAD4_STRRD Tax_Id=479432 SubName: Full=Putative
           transcriptional regulator, TetR
           family;[Streptosporangium roseum]
          Length = 212

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D  +RR   V A   ++ +EG+  AT R+VA  + +++G +RHYF     L+   
Sbjct: 1   MPKIVDHGQRRDEFVRAVWEVISREGVEGATVRKVAEAAGVSVGGLRHYFDTQRGLLSFA 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
               G  + +R+  H         R +     LLEEL+PLD  R  E  + +  +  S  
Sbjct: 61  AQAVGRSVAKRIAGHLHTDLPGAERAQ----LLLEELLPLDENRRVEVDVWLACLVRSHV 116

Query: 121 TEA 123
            E+
Sbjct: 117 DES 119


>tr|A8M2E1|A8M2E1_SALAI Tax_Id=391037 SubName: Full=Putative
           transcriptional regulator, TetR family;[Salinispora
           arenicola]
          Length = 204

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 10/136 (7%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D   RR+ + EA  R+V ++G++AAT R +AAE+  +  ++RHYFA    L++  
Sbjct: 1   MPKIVDHDARRAELAEAMWRVVCRDGVAAATVRSIAAEAGWSPSALRHYFATQTDLLIFA 60

Query: 61  VTEAGNRMGQRLMKH--TPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAAS 118
           +  A  ++ +R      T P    + R        LE+L+PLD +R  EA + + ++A+ 
Sbjct: 61  MEHATAKITERFAAESWTGPPLETVQR-------ALEQLLPLDQQRRREAEVWL-LLASR 112

Query: 119 RTTEAFRAATAQMATD 134
             T+      A+ A D
Sbjct: 113 AQTDPSAQRRAREADD 128


>tr|A6WG38|A6WG38_KINRD Tax_Id=266940 SubName: Full=Transcriptional
           regulator, TetR family;[Kineococcus radiotolerans]
          Length = 206

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 65/205 (31%), Positives = 90/205 (43%), Gaps = 22/205 (10%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  ID  ER   + EAA R+  +EG+ A + R VAAE+ L   S+R  F    SL+   
Sbjct: 1   MPRLIDHTEREIAVAEAAWRVAAREGVRAVSVRGVAAEAGLATASLRRAFPTQASLLAYC 60

Query: 61  VTEAGNRMGQR---LMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAA 117
           +  A  R   R   L + T P S          +A+L EL+PLDAER  EA +   +  A
Sbjct: 61  LDLARRRAAGRIAALAQVTDPGS---------ALAVLVELLPLDAERRLEAEVQFALGTA 111

Query: 118 SRTTEAFR----AATAQMATDLDDVLVTALKGMSVPQPSL-EAQRXXXXXXXXXXDAVTA 172
           + T  A R    AA   +AT    V      G +   P+  +A            D +  
Sbjct: 112 ALTDPALRPAADAAHEDVATACRHVARALTGGPAATDPTQPDATDPATAHLHALLDGLAL 171

Query: 173 H----GPRKPTTIA-KILRLHVDSL 192
           H     P  PT  A ++LR H+ +L
Sbjct: 172 HLVRQAPAAPTGWAVEVLRGHLATL 196


>tr|D3PUM8|D3PUM8_STANL Tax_Id=446470 SubName: Full=Transcriptional
           regulator, TetR family;[Stackebrandtia nassauensis]
          Length = 197

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 5/122 (4%)

Query: 5   IDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAVVTEA 64
           +D   RR+ + EA  R++ ++GLS A+ R VA E+ L+ GS+RHYF     L+   +   
Sbjct: 5   VDREARRAELAEAVWRIIRRDGLSQASVRNVAREAGLSQGSLRHYFTTQAELLAFSLAMV 64

Query: 65  GNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRTTEAF 124
           G R+  R+       SR+L      +  L E ++PLD +R  E  + +  + A+ T  A 
Sbjct: 65  GERIRDRM----SVVSRNLDGP-DMIAELAEAVMPLDEDRRVETEVWLAFLGAALTDPAL 119

Query: 125 RA 126
           R+
Sbjct: 120 RS 121


>tr|B0RE11|B0RE11_CLAMS Tax_Id=31964 SubName: Full=Putative
           TetR-family transcriptional regulator;[Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 208

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 15/205 (7%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  ID   R   + EA  R++ ++G S  + R VAAE+ L+ GS+RH F     L+   
Sbjct: 1   MPRLIDHARREDELAEAVWRVIHRDGASGVSVRTVAAEAGLSTGSLRHSFPSRIDLMTHA 60

Query: 61  VTEAGNRMGQRL-MKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASR 119
                 R+  R+  + T P +      R+  + +L E +PLD  R +EA +   ++A + 
Sbjct: 61  TALVAARIDGRIRSRRTDPDA------RRRAVRILAEHLPLDDSRRAEAEVTAALLADAA 114

Query: 120 TTEAFR-----AATAQMATDLDDVLVTALKGMSVP--QPSLEAQRXXXXXXXXXXD-AVT 171
           +    R     A  A   T L+ +      G+  P   P +EA               V 
Sbjct: 115 SHPRLREVRAAAHAAARETCLEQLAQLRAAGLLRPDADPEIEADHLQALLGGLALQLLVE 174

Query: 172 AHGPRKPTTIAKILRLHVDSLPTSR 196
              P +      +L  HVD+L   R
Sbjct: 175 EPDPARSARALGVLERHVDALVARR 199


>tr|C3JFY4|C3JFY4_RHOER Tax_Id=596309 SubName: Full=Transcriptional
           regulator, TetR family;[Rhodococcus erythropolis SK121]
          Length = 214

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP  +D   R+  I +A  R+++  GL+A TF+ VAAE+ +++  V++YF      ++A 
Sbjct: 1   MPRLVDHEVRQREITDAVRRVIVDGGLAAVTFQSVAAEAGISVRLVQYYFGTKREFLLAT 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
                   G RLM+       + +  R+ + A L  ++PLD +R  EA++L    AA+ T
Sbjct: 61  HQAVRQDAGARLMQELSVLGAE-ATPREVISAFLVGMLPLDRQRREEAIVLGAFHAAALT 119

Query: 121 TEAFRA 126
            +   A
Sbjct: 120 GQGIAA 125


>tr|Q9KHJ6|Q9KHJ6_9ACTO Tax_Id=115828 (encS)SubName: Full=Putative
           regulatory protein EncS;[Streptomyces maritimus]
          Length = 215

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 6/147 (4%)

Query: 1   MPARIDPVERRSHIVEAALRLVLKEGLSAATFRRVAAESQLNIGSVRHYFADHESLVVAV 60
           MP R+D  +RR+HI +A +R+  ++GL A T R VAAE+ +++  V++YF     L+ A 
Sbjct: 1   MPKRVDHAQRRAHIADALVRVAARDGLHAVTMRAVAAEAGMSLNLVQYYFDTKAQLMHAA 60

Query: 61  VTEAGNRMGQRLMKHTPPQSRDLSRQRQHLIALLEELVPLDAERHSEAVILMEVIAASRT 120
           +     +  +R          D    R  L A ++E +P+DA+ H+  ++       + T
Sbjct: 61  LQHLEQQSHERWSARL-ESLEDPGSARACLEAFVDEALPVDADSHTFRLVWTSYAVLAMT 119

Query: 121 -----TEAFRAATAQMATDLDDVLVTA 142
                 + F     ++   L  +L TA
Sbjct: 120 DPELAEQPFVEGPNRLERQLTHILATA 146


  Database: Amellifera_nr
    Posted date:  Jul 23, 2010  5:10 AM
  Number of letters in database: 4,236,830,644
  Number of sequences in database:  12,507,864
  
Lambda     K      H
   0.319    0.130    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 12507864
Number of Hits to DB: 1,273,958,271
Number of extensions: 40485326
Number of successful extensions: 126018
Number of sequences better than 10.0: 3974
Number of HSP's gapped: 127384
Number of HSP's successfully gapped: 3974
Length of query: 196
Length of database: 4,236,830,644
Length adjustment: 131
Effective length of query: 65
Effective length of database: 2,598,300,460
Effective search space: 168889529900
Effective search space used: 168889529900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)